AlfalfaGEDB | MsG0280009514.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009514.01

KEGG: -
GO: GO:0016020
PFAM: PF03381

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009514.01.T01	XP_013464278.1	90.957	376	6	2	1	376	1	348	0	691

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009514.01.T01	Q9SLK2	70.141	355	78	3	23	376	22	349	5.62E-178	501

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009514.01.T01	A0A072VAB2	90.957	376	6	2	1	376	1	348	0.0	691

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047797.01	MsG0280009514.01	0.805135	1.545300e-49	8.112138e-47
MsG0080047814.01	MsG0280009514.01	0.879470	1.213985e-69	6.589802e-66
MsG0080047869.01	MsG0280009514.01	0.814265	1.682530e-51	1.123681e-48
MsG0080047974.01	MsG0280009514.01	0.801733	7.834789e-49	3.769472e-46
MsG0080048029.01	MsG0280009514.01	0.800515	1.390042e-48	6.485118e-46
MsG0080048058.01	MsG0280009514.01	0.819058	1.417795e-52	1.079598e-49
MsG0080048461.01	MsG0280009514.01	0.833216	6.057159e-56	6.929644e-53
MsG0080048462.01	MsG0280009514.01	0.819869	9.260500e-53	7.212471e-50
MsG0080048700.01	MsG0280009514.01	0.858628	7.229552e-63	1.856797e-59
MsG0080048701.01	MsG0280009514.01	0.824536	7.652777e-54	6.797944e-51

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PPI

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Gene1	Gene2	Type
MsG0280008763.01	MsG0280009514.01	PPI
MsG0280009514.01	MsG0880044100.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009514.01.T01	MTR_2g067760	90.957	376	6	2	1	376	1	348	0.0	691
MsG0280009514.01.T01	MTR_2g101400	57.143	364	125	4	16	374	7	344	4.38e-149	425
MsG0280009514.01.T01	MTR_7g086110	59.593	344	110	4	32	372	4	321	6.51e-142	406
MsG0280009514.01.T01	MTR_2g451450	60.635	315	123	1	20	333	17	331	1.47e-139	400
MsG0280009514.01.T01	MTR_2g451450	66.667	216	72	0	118	333	1	216	2.85e-104	307

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009514.01.T01	AT1G54320	70.141	355	78	3	23	376	22	349	5.73e-179	501
MsG0280009514.01.T01	AT1G16360	63.904	374	107	3	3	375	2	348	1.21e-174	490
MsG0280009514.01.T01	AT3G12740	68.169	355	85	3	23	376	23	350	7.93e-173	485
MsG0280009514.01.T01	AT1G79450	64.706	374	104	3	3	375	2	348	3.59e-172	484
MsG0280009514.01.T01	AT1G16360	65.507	345	91	3	32	375	17	334	8.13e-165	464
MsG0280009514.01.T01	AT1G16360	69.836	305	90	2	32	335	17	320	1.29e-159	451
MsG0280009514.01.T01	AT1G79450	66.556	302	73	3	75	375	7	281	1.23e-142	406
MsG0280009514.01.T01	AT5G46150	54.128	327	145	2	12	333	3	329	2.65e-127	369
MsG0280009514.01.T01	AT5G46150	54.128	327	145	2	12	333	3	329	6.47e-127	369
MsG0280009514.01.T01	AT5G46150	54.128	327	145	2	12	333	3	329	6.47e-127	369

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Find 136 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGACTTGGGCAGTT+TGG	0.426383	2:-53442437	None:intergenic
AAATTACCGTATTCTCGTAC+CGG	0.537196	2:-53447100	None:intergenic
AACAGGTCAATTGTACCTTG+TGG	0.623062	2:+53445792	MsG0280009514.01.T01:CDS
AACGCAGTCATGTTTGGTTC+AGG	0.379391	2:-53448855	None:intergenic
AAGCCTTGTAATATTGAAAA+TGG	0.171467	2:-53447990	None:intergenic
AAGGCTTGGTTATTCTACAG+TGG	0.674305	2:+53448006	MsG0280009514.01.T01:three_prime_UTR
AAGTAACGTTGTTTGCAGGC+TGG	0.496367	2:+53448541	MsG0280009514.01.T01:three_prime_UTR
AATAGGTGATTTCATGTGCT+TGG	0.475930	2:-53444620	None:intergenic
AATCATTCAAACCATGGAGA+AGG	0.616292	2:+53449414	MsG0280009514.01.T01:three_prime_UTR
AATGAATATGACACATCACA+TGG	0.696307	2:+53449093	MsG0280009514.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGAATAGTGGTGCAT+TGG	+	Chr2:53444833-53444852	MsG0280009514.01.T01:intron	30.0%
AAAATATGAAACACTGACAC+TGG	-	Chr2:53446197-53446216	None:intergenic	30.0%
AAAGGAGTTGAAAGAGTTAA+AGG	-	Chr2:53447720-53447739	None:intergenic	30.0%
AAAGTTAGGGACTATAATGA+TGG	+	Chr2:53443541-53443560	MsG0280009514.01.T01:intron	30.0%
AAATATTCAAAAGGTGAGCA+TGG	-	Chr2:53446332-53446351	None:intergenic	30.0%
AAATCAAAAGAGAGTGGAAA+TGG	-	Chr2:53443846-53443865	None:intergenic	30.0%
AACAATTTCAACAACCTGAT+AGG	-	Chr2:53444397-53444416	None:intergenic	30.0%
AAGAGTAATATGAACTGACA+TGG	+	Chr2:53444004-53444023	MsG0280009514.01.T01:intron	30.0%
AATAAGATAGATCCCAAAGA+AGG	-	Chr2:53445535-53445554	None:intergenic	30.0%
AATCAAAAGAGAGTGGAAAT+GGG	-	Chr2:53443845-53443864	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	53442419	53449477	53442419	ID=MsG0280009514.01;Name=MsG0280009514.01
Chr2	mRNA	53442419	53449477	53442419	ID=MsG0280009514.01.T01;Parent=MsG0280009514.01;Name=MsG0280009514.01.T01;_AED=0.47;_eAED=0.48;_QI=150\|0.77\|0.8\|1\|0.55\|0.6\|10\|1484\|376
Chr2	exon	53449078	53449477	53449078	ID=MsG0280009514.01.T01:exon:38239;Parent=MsG0280009514.01.T01
Chr2	exon	53447901	53449039	53447901	ID=MsG0280009514.01.T01:exon:38238;Parent=MsG0280009514.01.T01
Chr2	exon	53447068	53447141	53447068	ID=MsG0280009514.01.T01:exon:38237;Parent=MsG0280009514.01.T01
Chr2	exon	53446362	53446655	53446362	ID=MsG0280009514.01.T01:exon:38236;Parent=MsG0280009514.01.T01
Chr2	exon	53445704	53446001	53445704	ID=MsG0280009514.01.T01:exon:38235;Parent=MsG0280009514.01.T01
Chr2	exon	53444616	53444686	53444616	ID=MsG0280009514.01.T01:exon:38234;Parent=MsG0280009514.01.T01
Chr2	exon	53444402	53444515	53444402	ID=MsG0280009514.01.T01:exon:38233;Parent=MsG0280009514.01.T01
Chr2	exon	53444234	53444308	53444234	ID=MsG0280009514.01.T01:exon:38232;Parent=MsG0280009514.01.T01
Chr2	exon	53444054	53444112	53444054	ID=MsG0280009514.01.T01:exon:38231;Parent=MsG0280009514.01.T01
Chr2	exon	53442419	53442659	53442419	ID=MsG0280009514.01.T01:exon:38230;Parent=MsG0280009514.01.T01
Chr2	five_prime_UTR	53442419	53442568	53442419	ID=MsG0280009514.01.T01:five_prime_utr;Parent=MsG0280009514.01.T01
Chr2	CDS	53442569	53442659	53442569	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53444054	53444112	53444054	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53444234	53444308	53444234	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53444402	53444515	53444402	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53444616	53444686	53444616	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53445704	53446001	53445704	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53446362	53446655	53446362	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53447068	53447141	53447068	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	CDS	53447901	53447955	53447901	ID=MsG0280009514.01.T01:cds;Parent=MsG0280009514.01.T01
Chr2	three_prime_UTR	53447956	53449039	53447956	ID=MsG0280009514.01.T01:three_prime_utr;Parent=MsG0280009514.01.T01
Chr2	three_prime_UTR	53449078	53449477	53449078	ID=MsG0280009514.01.T01:three_prime_utr;Parent=MsG0280009514.01.T01

Gene Sequence

>MsG0280009514.01.T01

ATGGCGTCTTCCAGCGCAGCAGCAGCAGCAGCAGAAGCTCCTGGATCTGCCGATTCCACTGCTCCAAGAAGAAACACAAAACGACCCAAGTATTCAAAGTTTACTCAGCAAGAACTTCCAGCTTGCAAGCCTATTCTTACACCTCGAGCGGTTATTTCGGCATTCTTGCTTGTCAGTGTTGTGTTCATTCCTATCGGAGTTGCTTCGCTAATGGCTTCAAGAAAGGTTGTTGAAATTGTTTATGGGTATGAGTCAGACTGCTTACCGGATGGCACTAAAGACGAGGTAGCATACATTCAGAGTCCTGAAACAGATAAAACGTGCAACATAACACTGAATGTGACCAAGCACATGAAATCACCTATTTATGTATACTATCAGCTTGACAACTTTTACCAGAATCATCGCCGGTATGTTAAAAGTCGAAGTGATGAGCAATTGAGGAGTCCTAAGGGAGAGAACTCAGTAAGTGCTTGTAAGCCTGAAGATACTGCAAATAACAGGTCAATTGTACCTTGTGGTCTCATAGCTTGGAGTTTATTCAATGACACATACAGCTTCTCCGTCAACAATACAAATTTGACGGTGAACAAGAAAGGCATCTCCTGGAAGAGTGATAGGGAGCACAAATTTGGAAAAGATGTTTTTCCCAAAAACTTCCAGAATGGTTCTATAATAGGTGGCGCACATCTTAATGAATCGATACCGTTGAATGAGCAGGAGGATCTTATTGTCTGGATGAGAACCGCTGCCTTACCAACTTTTAGGAAGTTATATGGAAAGATAGAGGTGGATTTGAATCAAGGTGACCTCATAGATGTAACACTTGAAAATAACTATAACACATACAGTTTCAATGGCAAGAAAAAGCTCGTACTGTCTACTACTAGCTGGCTTGGTGGGAAGAATGATTTCCTTGGCATTGCTTATCTCACTGTTGGAGGATTATGCTTCTTTTTATCGTTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGTACGTATGGGTACGGTACCCAGTACGATATGGGTACCGGTACGAGAATACGGTAATTTTAAAAAATGAAGAGCACGGGCAACTTGGAGATCCATCATATTTGTCATGGAATAGGAACCAAGGAGGGCAGTAA

Protein sequence

>MsG0280009514.01.T01

MASSSAAAAAAEAPGSADSTAPRRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFIPIGVASLMASRKVVEIVYGYESDCLPDGTKDEVAYIQSPETDKTCNITLNVTKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRSPKGENSVSACKPEDTANNRSIVPCGLIAWSLFNDTYSFSVNNTNLTVNKKGISWKSDREHKFGKDVFPKNFQNGSIIGGAHLNESIPLNEQEDLIVWMRTAALPTFRKLYGKIEVDLNQGDLIDVTLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLSLAFTIVYFVKPRYVWVRYPVRYGYRYENTVILKNEEHGQLGDPSYLSWNRNQGGQ*