AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007388.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007388.01.T01 MTR_2g023880 85.603 257 2 1 1 257 1 222 4.36e-152 423
MsG0280007388.01.T01 MTR_4g049540 52.734 256 85 2 1 256 1 220 1.02e-88 262
MsG0280007388.01.T01 MTR_2g088060 44.531 256 106 2 1 256 1 220 1.94e-60 190
MsG0280007388.01.T01 MTR_7g056133 38.306 248 109 4 1 240 1 212 7.24e-42 142
MsG0280007388.01.T01 MTR_5g093360 49.541 109 54 1 1 109 1 108 3.54e-30 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007388.01.T01 AT5G42570 55.328 244 73 2 1 244 1 208 4.96e-89 263
MsG0280007388.01.T01 AT1G11905 51.429 245 83 2 1 245 1 209 3.71e-77 233
MsG0280007388.01.T01 AT1G11905 47.347 245 92 2 1 245 1 208 8.77e-67 206
MsG0280007388.01.T01 AT5G48660 36.145 249 115 4 1 241 1 213 1.19e-36 129
MsG0280007388.01.T01 AT3G07190 34.538 249 119 4 1 241 1 213 1.80e-34 124
MsG0280007388.01.T01 AT3G20450 39.881 168 65 2 1 167 5 137 3.26e-30 110
MsG0280007388.01.T01 AT5G48660 28.488 172 81 2 77 241 1 137 6.91e-12 62.0

Find 52 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTCACATATTCTTCT+TGG 0.219887 2:-14818471 None:intergenic
TCCTACCGATCAGGTTCTTA+TGG 0.252341 2:+14816148 MsG0280007388.01.T01:CDS
GTAGCTGGTTGCGGAGGTTT+TGG 0.307160 2:-14818415 None:intergenic
ATTGAGGAAGCTTGTAATAA+TGG 0.322813 2:+14815986 MsG0280007388.01.T01:CDS
CTATCATAAGTGCAAGAAAA+AGG 0.327998 2:-14818112 None:intergenic
ATTCTTGGTCAATTATTTGC+AGG 0.338690 2:+14818083 MsG0280007388.01.T01:CDS
GGGGCTGAGGATGCGAAAGC+TGG 0.347270 2:+14818209 MsG0280007388.01.T01:CDS
TTGCGAGCATTATTCATTCT+TGG 0.348203 2:+14818068 MsG0280007388.01.T01:CDS
GAAGCTTGTAATAATGGCTT+TGG 0.364769 2:+14815992 MsG0280007388.01.T01:CDS
CCATGCTCTTTCTCCGAATC+CGG 0.367578 2:-14818163 None:intergenic
TTATTACAAGCTTCCTCAAT+GGG 0.391866 2:-14815983 None:intergenic
AAGCCAGTGTAAGTGCTCTA+AGG 0.421670 2:+14818342 MsG0280007388.01.T01:CDS
TTCTGTTAATCCTACCGATC+AGG 0.442382 2:+14816139 MsG0280007388.01.T01:CDS
ACAGACTGCATCATTACATA+AGG 0.453424 2:+14818135 MsG0280007388.01.T01:CDS
ACATAAGGGAACTCCGGATT+CGG 0.458900 2:+14818150 MsG0280007388.01.T01:CDS
ACGAGGTCGTGGACCTGTTA+TGG 0.464283 2:+14816025 MsG0280007388.01.T01:CDS
TTCTGTCAACAGATTGTAGC+TGG 0.470135 2:-14818430 None:intergenic
ATTATTACAAGCTTCCTCAA+TGG 0.471169 2:-14815984 None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG 0.490422 2:+14818277 MsG0280007388.01.T01:CDS
CAACAGATTGTAGCTGGTTG+CGG 0.507849 2:-14818424 None:intergenic
GTTATGGTGAAAACCGTTGC+TGG 0.514910 2:+14816041 MsG0280007388.01.T01:CDS
TTCAGATGAAACTAAAACAA+TGG 0.522908 2:+14818235 MsG0280007388.01.T01:CDS
GATCGGTTGAAACGAGGTCG+TGG 0.523142 2:+14816014 MsG0280007388.01.T01:CDS
ACTTCAGTCAAAAGATAAAG+AGG 0.526615 2:+14818307 MsG0280007388.01.T01:CDS
CAACAACGTGGGATCGAAGA+TGG 0.533524 2:+14816113 MsG0280007388.01.T01:CDS
TGAATATGATCGCTTACTTG+AGG 0.542275 2:+14818388 MsG0280007388.01.T01:CDS
TTGTAATAATGGCTTTGGAT+CGG 0.542465 2:+14815997 MsG0280007388.01.T01:CDS
AGCTGTTAAGAAACAAATGC+GGG 0.550293 2:+14818187 MsG0280007388.01.T01:CDS
TCTTCTTGAAGCTACACTCA+TGG 0.550488 2:+14816178 MsG0280007388.01.T01:CDS
CAGACTGCATCATTACATAA+GGG 0.555282 2:+14818136 MsG0280007388.01.T01:CDS
CTTCTTGAAGCTACACTCAT+GGG 0.557141 2:+14816179 MsG0280007388.01.T01:CDS
CAGATTGTAGCTGGTTGCGG+AGG 0.567147 2:-14818421 None:intergenic
GCTCTAAGGAAACAATCTGA+AGG 0.569864 2:+14818356 MsG0280007388.01.T01:CDS
ATCATTACATAAGGGAACTC+CGG 0.575747 2:+14818144 MsG0280007388.01.T01:CDS
GCCATAAGAACCTGATCGGT+AGG 0.586898 2:-14816149 None:intergenic
CTCTAAGGAAACAATCTGAA+GGG 0.587548 2:+14818357 MsG0280007388.01.T01:CDS
CAGTCAAAAGATAAAGAGGT+AGG 0.596716 2:+14818311 MsG0280007388.01.T01:CDS
CCGGATTCGGAGAAAGAGCA+TGG 0.597596 2:+14818163 MsG0280007388.01.T01:CDS
GCTTTGGATCGGTTGAAACG+AGG 0.607033 2:+14816008 MsG0280007388.01.T01:CDS
TTTCCTTAGAGCACTTACAC+TGG 0.609208 2:-14818345 None:intergenic
CTTAGCCATAAGAACCTGAT+CGG 0.613122 2:-14816153 None:intergenic
AACAAGAACAGTACCAGCAA+CGG 0.621936 2:-14816054 None:intergenic
CTGTTAAGAAACAAATGCGG+GGG 0.642686 2:+14818189 MsG0280007388.01.T01:CDS
TGTTATTCAAGACCCCATTG+AGG 0.652558 2:+14815970 MsG0280007388.01.T01:CDS
TGATGAAGATTCAACAACGT+GGG 0.655476 2:+14816102 MsG0280007388.01.T01:CDS
GCTGTTAAGAAACAAATGCG+GGG 0.673517 2:+14818188 MsG0280007388.01.T01:CDS
TTATTAAAAGATATCCTCTG+TGG 0.683349 2:+14818044 MsG0280007388.01.T01:CDS
TATTACAAGCTTCCTCAATG+GGG 0.687342 2:-14815982 None:intergenic
AAGCTGTTAAGAAACAAATG+CGG 0.709469 2:+14818186 MsG0280007388.01.T01:CDS
TGTTAAGAAACAAATGCGGG+GGG 0.715839 2:+14818190 MsG0280007388.01.T01:CDS
ATGATGAAGATTCAACAACG+TGG 0.740230 2:+14816101 MsG0280007388.01.T01:CDS
ATAATGCTCGCAAGCCACAG+AGG 0.744250 2:-14818058 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG - Chr2:14817073-14817092 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG - Chr2:14817074-14817093 None:intergenic 10.0%
!! TTTAATAAGTCTAAATATTA+AGG - Chr2:14818032-14818051 None:intergenic 10.0%
!! TATAGTATTAAACTTATTAG+TGG + Chr2:14817154-14817173 MsG0280007388.01.T01:intron 15.0%
!!! TTGAATTTGATTTATGTTTA+TGG + Chr2:14816283-14816302 MsG0280007388.01.T01:intron 15.0%
!!! TTTTACTAGTTGTATATAAT+TGG + Chr2:14817022-14817041 MsG0280007388.01.T01:intron 15.0%
!!! TTTTGTAAATATGATCAAAT+AGG + Chr2:14816382-14816401 MsG0280007388.01.T01:intron 15.0%
!! AATCATAAGATATATGCATA+TGG - Chr2:14817392-14817411 None:intergenic 20.0%
!! ATTGTTTATTGATGAGTTAT+TGG + Chr2:14817726-14817745 MsG0280007388.01.T01:intron 20.0%
!! TTCTAAACCATTGAAAAAAT+CGG - Chr2:14817620-14817639 None:intergenic 20.0%
!! TTGATTTATGTTTATGGATT+TGG + Chr2:14816289-14816308 MsG0280007388.01.T01:intron 20.0%
!!! AATTTGCTTATAATTAAGAC+TGG + Chr2:14816425-14816444 MsG0280007388.01.T01:intron 20.0%
!!! AGTATTTCTTTTGAATAGTA+TGG + Chr2:14817129-14817148 MsG0280007388.01.T01:intron 20.0%
!!! ATGGGTATGTTTTTTTTAAA+TGG + Chr2:14816197-14816216 MsG0280007388.01.T01:CDS 20.0%
!!! CTATATGATTTGCAATTTTT+AGG + Chr2:14817781-14817800 MsG0280007388.01.T01:intron 20.0%
!!! GTTATTGTTTTACTATTGAT+AGG - Chr2:14817002-14817021 None:intergenic 20.0%
!!! TCTTTGATTTTTAATAAGAC+CGG + Chr2:14817918-14817937 MsG0280007388.01.T01:intron 20.0%
!!! TGGGTATGTTTTTTTTAAAT+GGG + Chr2:14816198-14816217 MsG0280007388.01.T01:CDS 20.0%
! AAGTTTAACAACATACTAGA+TGG - Chr2:14817830-14817849 None:intergenic 25.0%
! ACTACATTAATGAAAGGAAA+AGG - Chr2:14816655-14816674 None:intergenic 25.0%
! CTACATTAATGAAAGGAAAA+GGG - Chr2:14816654-14816673 None:intergenic 25.0%
! TTATTAAAAGATATCCTCTG+TGG + Chr2:14818044-14818063 MsG0280007388.01.T01:CDS 25.0%
! TTCAGATGAAACTAAAACAA+TGG + Chr2:14818235-14818254 MsG0280007388.01.T01:CDS 25.0%
! TTTGGAAATATGTTGAACTT+AGG - Chr2:14817877-14817896 None:intergenic 25.0%
!! AATCATTGTGATTCTTTTTC+AGG - Chr2:14817338-14817357 None:intergenic 25.0%
!! GAATGAATGAATTTTGTATG+AGG + Chr2:14816258-14816277 MsG0280007388.01.T01:intron 25.0%
!!! CAGCAATGTTTTGAAAAATT+TGG - Chr2:14817895-14817914 None:intergenic 25.0%
!!! GAAGTTTTGAGTAATGTTTA+AGG + Chr2:14817100-14817119 MsG0280007388.01.T01:intron 25.0%
AAGCTGTTAAGAAACAAATG+CGG + Chr2:14818186-14818205 MsG0280007388.01.T01:CDS 30.0%
AAGTTGAAAAATGTGAGCTT+TGG + Chr2:14817680-14817699 MsG0280007388.01.T01:intron 30.0%
ACAATGATTCAGCATTCATA+AGG + Chr2:14817349-14817368 MsG0280007388.01.T01:intron 30.0%
ACTTCAGTCAAAAGATAAAG+AGG + Chr2:14818307-14818326 MsG0280007388.01.T01:CDS 30.0%
AGATCGACTACATTAATGAA+AGG - Chr2:14816661-14816680 None:intergenic 30.0%
AGATCTTCTCAATTTCCAAA+AGG - Chr2:14816587-14816606 None:intergenic 30.0%
ATTATTACAAGCTTCCTCAA+TGG - Chr2:14815987-14816006 None:intergenic 30.0%
ATTCTTGGTCAATTATTTGC+AGG + Chr2:14818083-14818102 MsG0280007388.01.T01:CDS 30.0%
ATTGAGGAAGCTTGTAATAA+TGG + Chr2:14815986-14816005 MsG0280007388.01.T01:CDS 30.0%
CAGTATTGTTTATGTTGGAT+TGG - Chr2:14817987-14818006 None:intergenic 30.0%
CTATCATAAGTGCAAGAAAA+AGG - Chr2:14818115-14818134 None:intergenic 30.0%
CTCAACAGTATTGTTTATGT+TGG - Chr2:14817992-14818011 None:intergenic 30.0%
GAATAACCCAACAAAGAATT+AGG - Chr2:14817570-14817589 None:intergenic 30.0%
GTTTATTGATGAGTTATTGG+TGG + Chr2:14817729-14817748 MsG0280007388.01.T01:intron 30.0%
TGCTTATAATTAAGACTGGA+CGG + Chr2:14816429-14816448 MsG0280007388.01.T01:intron 30.0%
TGTTTGCCTAATTCTTTGTT+GGG + Chr2:14817561-14817580 MsG0280007388.01.T01:intron 30.0%
TTAAAACAACATAGCTGAAG+AGG + Chr2:14817948-14817967 MsG0280007388.01.T01:intron 30.0%
TTATTACAAGCTTCCTCAAT+GGG - Chr2:14815986-14816005 None:intergenic 30.0%
TTGTTTGCCTAATTCTTTGT+TGG + Chr2:14817560-14817579 MsG0280007388.01.T01:intron 30.0%
! ATGGTTTAGAATGAATGTTG+AGG + Chr2:14817629-14817648 MsG0280007388.01.T01:intron 30.0%
! TGATCAATCACAAAACCTTT+TGG + Chr2:14816569-14816588 MsG0280007388.01.T01:intron 30.0%
!! TTGTAATAATGGCTTTGGAT+CGG + Chr2:14815997-14816016 MsG0280007388.01.T01:CDS 30.0%
!!! ATGTTGTTTTAAGATGTGAC+CGG - Chr2:14817940-14817959 None:intergenic 30.0%
!!! GATTCTTTTTCAGGAAAACA+CGG - Chr2:14817329-14817348 None:intergenic 30.0%
!!! TTTGCTACCGATTTTTTCAA+TGG + Chr2:14817610-14817629 MsG0280007388.01.T01:intron 30.0%
AAGAACCATTCGAGAATTGA+AGG - Chr2:14816795-14816814 None:intergenic 35.0%
ACAGACTGCATCATTACATA+AGG + Chr2:14818135-14818154 MsG0280007388.01.T01:CDS 35.0%
ACTCCGAAAGATCAGAAAAT+GGG - Chr2:14816625-14816644 None:intergenic 35.0%
AGCTGTTAAGAAACAAATGC+GGG + Chr2:14818187-14818206 MsG0280007388.01.T01:CDS 35.0%
ATCATTACATAAGGGAACTC+CGG + Chr2:14818144-14818163 MsG0280007388.01.T01:CDS 35.0%
ATGATGAAGATTCAACAACG+TGG + Chr2:14816101-14816120 MsG0280007388.01.T01:CDS 35.0%
CAGACTGCATCATTACATAA+GGG + Chr2:14818136-14818155 MsG0280007388.01.T01:CDS 35.0%
CAGTCAAAAGATAAAGAGGT+AGG + Chr2:14818311-14818330 MsG0280007388.01.T01:CDS 35.0%
CTGTTGTCAATGCAGAAATA+CGG - Chr2:14817215-14817234 None:intergenic 35.0%
GAAGCTTGTAATAATGGCTT+TGG + Chr2:14815992-14816011 MsG0280007388.01.T01:CDS 35.0%
GAGAATGTTCTACTTTCTTG+TGG + Chr2:14817702-14817721 MsG0280007388.01.T01:intron 35.0%
TATTACAAGCTTCCTCAATG+GGG - Chr2:14815985-14816004 None:intergenic 35.0%
TGAATATGATCGCTTACTTG+AGG + Chr2:14818388-14818407 MsG0280007388.01.T01:CDS 35.0%
TGATGAAGATTCAACAACGT+GGG + Chr2:14816102-14816121 MsG0280007388.01.T01:CDS 35.0%
TTCAGCATTCATAAGGCATA+AGG + Chr2:14817356-14817375 MsG0280007388.01.T01:intron 35.0%
TTGCGAGCATTATTCATTCT+TGG + Chr2:14818068-14818087 MsG0280007388.01.T01:CDS 35.0%
TTTGTATGAGTTGTGAGTGT+TGG + Chr2:14816527-14816546 MsG0280007388.01.T01:intron 35.0%
! CTCTAAGGAAACAATCTGAA+GGG + Chr2:14818357-14818376 MsG0280007388.01.T01:CDS 35.0%
! GAACCCATTTTCTGATCTTT+CGG + Chr2:14816619-14816638 MsG0280007388.01.T01:intron 35.0%
! GTCATATCTAGTTTCCGTAT+CGG - Chr2:14816476-14816495 None:intergenic 35.0%
!!! TGGTATTTTAGCCTCCTAAT+GGG + Chr2:14817462-14817481 MsG0280007388.01.T01:intron 35.0%
!!! TTGGTATTTTAGCCTCCTAA+TGG + Chr2:14817461-14817480 MsG0280007388.01.T01:intron 35.0%
AACAAGAACAGTACCAGCAA+CGG - Chr2:14816057-14816076 None:intergenic 40.0%
AATACACGTTCACGAGGTAT+AGG - Chr2:14817301-14817320 None:intergenic 40.0%
AATCATATGAGCCCATTAGG+AGG - Chr2:14817476-14817495 None:intergenic 40.0%
AATTAGGCAAACAACCAACG+AGG - Chr2:14817554-14817573 None:intergenic 40.0%
CTGAATCATATGAGCCCATT+AGG - Chr2:14817479-14817498 None:intergenic 40.0%
CTGTTAAGAAACAAATGCGG+GGG + Chr2:14818189-14818208 MsG0280007388.01.T01:CDS 40.0%
CTTAGCCATAAGAACCTGAT+CGG - Chr2:14816156-14816175 None:intergenic 40.0%
CTTCTTGAAGCTACACTCAT+GGG + Chr2:14816179-14816198 MsG0280007388.01.T01:CDS 40.0%
GACTCCGAAAGATCAGAAAA+TGG - Chr2:14816626-14816645 None:intergenic 40.0%
GCTAAAATACCAAGAGTGAC+CGG - Chr2:14817454-14817473 None:intergenic 40.0%
GCTGTTAAGAAACAAATGCG+GGG + Chr2:14818188-14818207 MsG0280007388.01.T01:CDS 40.0%
TCTTCTTGAAGCTACACTCA+TGG + Chr2:14816178-14816197 MsG0280007388.01.T01:CDS 40.0%
TGTTAAGAAACAAATGCGGG+GGG + Chr2:14818190-14818209 MsG0280007388.01.T01:CDS 40.0%
TGTTATTCAAGACCCCATTG+AGG + Chr2:14815970-14815989 MsG0280007388.01.T01:CDS 40.0%
TTCTGTCAACAGATTGTAGC+TGG - Chr2:14818433-14818452 None:intergenic 40.0%
TTCTGTTAATCCTACCGATC+AGG + Chr2:14816139-14816158 MsG0280007388.01.T01:CDS 40.0%
! AGTTATTGGTGGCATTAGCA+GGG + Chr2:14817740-14817759 MsG0280007388.01.T01:intron 40.0%
! TTTCCTTAGAGCACTTACAC+TGG - Chr2:14818348-14818367 None:intergenic 40.0%
!! GCTCTAAGGAAACAATCTGA+AGG + Chr2:14818356-14818375 MsG0280007388.01.T01:CDS 40.0%
AAGCCAGTGTAAGTGCTCTA+AGG + Chr2:14818342-14818361 MsG0280007388.01.T01:CDS 45.0%
ACATAAGGGAACTCCGGATT+CGG + Chr2:14818150-14818169 MsG0280007388.01.T01:CDS 45.0%
AGAGGCTTTACCCTGTCAAA+CGG + Chr2:14816850-14816869 MsG0280007388.01.T01:intron 45.0%
CAACAGATTGTAGCTGGTTG+CGG - Chr2:14818427-14818446 None:intergenic 45.0%
CGGAGCATAGCAGAAAAATC+AGG + Chr2:14816921-14816940 MsG0280007388.01.T01:intron 45.0%
CTGTCCTCTGTTGTCAAAAG+CGG + Chr2:14816880-14816899 MsG0280007388.01.T01:intron 45.0%
GTCAATGCAGAAATACGGTG+TGG - Chr2:14817210-14817229 None:intergenic 45.0%
GTTATGGTGAAAACCGTTGC+TGG + Chr2:14816041-14816060 MsG0280007388.01.T01:CDS 45.0%
GTTCGAAATACACGTTCACG+AGG - Chr2:14817307-14817326 None:intergenic 45.0%
TCCTACCGATCAGGTTCTTA+TGG + Chr2:14816148-14816167 MsG0280007388.01.T01:CDS 45.0%
TCTAGAAGCTGAACCTAGAC+AGG - Chr2:14817242-14817261 None:intergenic 45.0%
TCTTGAGTTTACTGTGCCTC+TGG + Chr2:14816811-14816830 MsG0280007388.01.T01:intron 45.0%
TTTGACAGGGTAAAGCCTCT+CGG - Chr2:14816850-14816869 None:intergenic 45.0%
! GAGTTATTGGTGGCATTAGC+AGG + Chr2:14817739-14817758 MsG0280007388.01.T01:intron 45.0%
! GCAACGGTTTTCACCATAAC+AGG - Chr2:14816041-14816060 None:intergenic 45.0%
! TCTAGTTTCCGTATCGGATC+CGG - Chr2:14816470-14816489 None:intergenic 45.0%
! TTTTGACAACAGAGGACAGG+AGG - Chr2:14816879-14816898 None:intergenic 45.0%
!! TGAGTTGTGAGTGTTGGTCA+CGG + Chr2:14816533-14816552 MsG0280007388.01.T01:intron 45.0%
AAATACGGTGTGGCGCATAG+CGG - Chr2:14817200-14817219 None:intergenic 50.0%
ACTTGTGAGTGAAGCCTCGT+TGG + Chr2:14817537-14817556 MsG0280007388.01.T01:intron 50.0%
AGAAGTGGAAAGCGGCAAAG+CGG + Chr2:14816975-14816994 MsG0280007388.01.T01:intron 50.0%
AGAGAAAGAGCCTTCACCCT+TGG + Chr2:14817423-14817442 MsG0280007388.01.T01:intron 50.0%
ATAATGCTCGCAAGCCACAG+AGG - Chr2:14818061-14818080 None:intergenic 50.0%
CAACAACGTGGGATCGAAGA+TGG + Chr2:14816113-14816132 MsG0280007388.01.T01:CDS 50.0%
CCATGCTCTTTCTCCGAATC+CGG - Chr2:14818166-14818185 None:intergenic 50.0%
CGGGTATCAGAAGTGGAAAG+CGG + Chr2:14816967-14816986 MsG0280007388.01.T01:intron 50.0%
GAGAAAGAGCCTTCACCCTT+GGG + Chr2:14817424-14817443 MsG0280007388.01.T01:intron 50.0%
GAGGCTTTACCCTGTCAAAC+GGG + Chr2:14816851-14816870 MsG0280007388.01.T01:intron 50.0%
GCCATAAGAACCTGATCGGT+AGG - Chr2:14816152-14816171 None:intergenic 50.0%
GGCTGCCTTCAATTCTCGAA+TGG + Chr2:14816787-14816806 MsG0280007388.01.T01:intron 50.0%
TCTGCTATGCTCCGCTATAG+CGG - Chr2:14816915-14816934 None:intergenic 50.0%
TGACAACAGAGCTCCTGTCT+AGG + Chr2:14817226-14817245 MsG0280007388.01.T01:intron 50.0%
TGACACTGACACAGACACGT+TGG + Chr2:14816492-14816511 MsG0280007388.01.T01:intron 50.0%
TTGCTGCATCTGATGCAGCA+TGG + Chr2:14816766-14816785 MsG0280007388.01.T01:intron 50.0%
TTGGGTAAACCGGTCACTCT+TGG + Chr2:14817442-14817461 MsG0280007388.01.T01:intron 50.0%
! AAGAGTGACCGGTTTACCCA+AGG - Chr2:14817443-14817462 None:intergenic 50.0%
! ACGGAGTATCTGTCAAGCAC+CGG + Chr2:14816448-14816467 MsG0280007388.01.T01:intron 50.0%
! AGAGTGACCGGTTTACCCAA+GGG - Chr2:14817442-14817461 None:intergenic 50.0%
! CGCTTTTGACAACAGAGGAC+AGG - Chr2:14816882-14816901 None:intergenic 50.0%
! GAGAGCAGAAGTTGATCGTC+TGG + Chr2:14818277-14818296 MsG0280007388.01.T01:CDS 50.0%
! GCTTTGGATCGGTTGAAACG+AGG + Chr2:14816008-14816027 MsG0280007388.01.T01:CDS 50.0%
AAAATCAGGACCACTGCGCC+AGG + Chr2:14816935-14816954 MsG0280007388.01.T01:intron 55.0%
AATACGGTGTGGCGCATAGC+GGG - Chr2:14817199-14817218 None:intergenic 55.0%
ACGAGGTCGTGGACCTGTTA+TGG + Chr2:14816025-14816044 MsG0280007388.01.T01:CDS 55.0%
AGGGTAAAGCCTCTCGGACT+GGG - Chr2:14816844-14816863 None:intergenic 55.0%
CAGATTGTAGCTGGTTGCGG+AGG - Chr2:14818424-14818443 None:intergenic 55.0%
CCGGATTCGGAGAAAGAGCA+TGG + Chr2:14818163-14818182 MsG0280007388.01.T01:CDS 55.0%
CGTTCACGAGGTATAGGCAC+TGG - Chr2:14817295-14817314 None:intergenic 55.0%
GATCGGTTGAAACGAGGTCG+TGG + Chr2:14816014-14816033 MsG0280007388.01.T01:CDS 55.0%
GCCTTCACCCTTGGGTAAAC+CGG + Chr2:14817432-14817451 MsG0280007388.01.T01:intron 55.0%
! ACCGGTTTACCCAAGGGTGA+AGG - Chr2:14817436-14817455 None:intergenic 55.0%
! GTAGCTGGTTGCGGAGGTTT+TGG - Chr2:14818418-14818437 None:intergenic 55.0%
!! ACTGGAAGAGGTGCCAACAG+GGG - Chr2:14817277-14817296 None:intergenic 55.0%
!! CACTGGAAGAGGTGCCAACA+GGG - Chr2:14817278-14817297 None:intergenic 55.0%
!! CGAGGTATAGGCACTGGAAG+AGG - Chr2:14817289-14817308 None:intergenic 55.0%
!! GTCAAGCACCGGATCCGATA+CGG + Chr2:14816459-14816478 MsG0280007388.01.T01:intron 55.0%
ACAGGAGGAGCCCGTTTGAC+AGG - Chr2:14816864-14816883 None:intergenic 60.0%
ACCTCTCTCAGCTCCCCTGT+TGG + Chr2:14817261-14817280 MsG0280007388.01.T01:intron 60.0%
ACTTCTGATACCCGCCGACG+CGG - Chr2:14816961-14816980 None:intergenic 60.0%
CAGGAGGAGCCCGTTTGACA+GGG - Chr2:14816863-14816882 None:intergenic 60.0%
CAGGGTAAAGCCTCTCGGAC+TGG - Chr2:14816845-14816864 None:intergenic 60.0%
CTATGCTCCGCTATAGCGGC+CGG - Chr2:14816911-14816930 None:intergenic 60.0%
GAAACAAATGCGGGGGGCTG+AGG + Chr2:14818196-14818215 MsG0280007388.01.T01:CDS 60.0%
GGGTAAAGCCTCTCGGACTG+GGG - Chr2:14816843-14816862 None:intergenic 60.0%
GTTGTCAAAAGCGGCCGCAC+CGG + Chr2:14816889-14816908 MsG0280007388.01.T01:intron 60.0%
!! CATAGCGGGCGCTATTTCGG+TGG - Chr2:14817185-14817204 None:intergenic 60.0%
!! GCACTGGAAGAGGTGCCAAC+AGG - Chr2:14817279-14817298 None:intergenic 60.0%
!! GCGCATAGCGGGCGCTATTT+CGG - Chr2:14817188-14817207 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG - Chr2:14816887-14816906 None:intergenic 60.0%
GCCAACAGGGGAGCTGAGAG+AGG - Chr2:14817265-14817284 None:intergenic 65.0%
GGCTCTTTCCCCAGTCCGAG+AGG + Chr2:14816832-14816851 MsG0280007388.01.T01:intron 65.0%
GGGGCTGAGGATGCGAAAGC+TGG + Chr2:14818209-14818228 MsG0280007388.01.T01:CDS 65.0%
! CGGACTGGGGAAAGAGCCAG+AGG - Chr2:14816830-14816849 None:intergenic 65.0%
! GCGTCGGCGGGTATCAGAAG+TGG + Chr2:14816960-14816979 MsG0280007388.01.T01:intron 65.0%
CTCCGCTATAGCGGCCGGTG+CGG - Chr2:14816906-14816925 None:intergenic 70.0%
ACCACTGCGCCAGGCCGCGT+CGG + Chr2:14816944-14816963 MsG0280007388.01.T01:intron 75.0%
TGATACCCGCCGACGCGGCC+TGG - Chr2:14816956-14816975 None:intergenic 75.0%
! GGCCGCACCGGCCGCTATAG+CGG + Chr2:14816901-14816920 MsG0280007388.01.T01:intron 75.0%
! ACTGCGCCAGGCCGCGTCGG+CGG + Chr2:14816947-14816966 MsG0280007388.01.T01:intron 80.0%
! GCCGACGCGGCCTGGCGCAG+TGG - Chr2:14816948-14816967 None:intergenic 85.0%
!! CTGCGCCAGGCCGCGTCGGC+GGG + Chr2:14816948-14816967 MsG0280007388.01.T01:intron 85.0%
Chromosome Type Strat End Strand Name
Chr2 gene 14815915 14818487 14815915 ID=MsG0280007388.01;Name=MsG0280007388.01
Chr2 mRNA 14815915 14818487 14815915 ID=MsG0280007388.01.T01;Parent=MsG0280007388.01;Name=MsG0280007388.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|0|0.5|2|0|257
Chr2 exon 14815915 14816242 14815915 ID=MsG0280007388.01.T01:exon:4117;Parent=MsG0280007388.01.T01
Chr2 exon 14818042 14818487 14818042 ID=MsG0280007388.01.T01:exon:4118;Parent=MsG0280007388.01.T01
Chr2 CDS 14815915 14816242 14815915 ID=MsG0280007388.01.T01:cds;Parent=MsG0280007388.01.T01
Chr2 CDS 14818042 14818487 14818042 ID=MsG0280007388.01.T01:cds;Parent=MsG0280007388.01.T01
Gene Sequence

>MsG0280007388.01.T01

ATGATTCATCTATTATTCACAGTGATTTTTTCAGAAGCAACAATGATCGCATTGCTGTTATTCAAGACCCCATTGAGGAAGCTTGTAATAATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAAGATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTATGTTTTTTTTAAATGGGTTGTTGAAAAGTTTTGATTTTTACTTATTAAAAGATATCCTCTGTGGCTTGCGAGCATTATTCATTCTTGGTCAATTATTTGCAGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA
Protein sequence

>MsG0280007388.01.T01

MIHLLFTVIFSEATMIALLLFKTPLRKLVIMALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEDGASVNPTDQVLMAKHLLEATLMGMFFLNGLLKSFDFYLLKDILCGLRALFILGQLFAGAILFLALMIDRLHHYIRELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM*