AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007608.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007608.01.T01 MTR_2g028770 81.195 452 24 3 10 400 1 452 0.0 719
MsG0280007608.01.T01 MTR_5g091570 52.110 474 153 7 1 400 6 479 6.27e-161 465
MsG0280007608.01.T02 MTR_2g028770 81.195 452 24 3 10 400 1 452 0.0 719
MsG0280007608.01.T02 MTR_5g091570 52.110 474 153 7 1 400 6 479 6.27e-161 465
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007608.01.T01 AT1G29820 58.351 461 114 6 12 400 4 458 1.15e-175 501
MsG0280007608.01.T01 AT1G29820 58.351 461 114 6 12 400 4 458 1.15e-175 501
MsG0280007608.01.T01 AT1G29830 55.606 437 113 5 39 400 21 451 1.25e-160 460
MsG0280007608.01.T01 AT1G29830 53.579 461 128 6 20 400 32 486 1.68e-160 464
MsG0280007608.01.T01 AT2G42950 57.416 418 120 6 31 399 2 410 2.18e-160 461
MsG0280007608.01.T01 AT2G42950 57.416 418 120 6 31 399 2 410 2.18e-160 461
MsG0280007608.01.T01 AT1G29830 55.157 446 116 6 30 400 15 451 2.63e-160 462
MsG0280007608.01.T02 AT1G29820 58.351 461 114 6 12 400 4 458 1.15e-175 501
MsG0280007608.01.T02 AT1G29820 58.351 461 114 6 12 400 4 458 1.15e-175 501
MsG0280007608.01.T02 AT1G29830 55.606 437 113 5 39 400 21 451 1.25e-160 460
MsG0280007608.01.T02 AT1G29830 53.579 461 128 6 20 400 32 486 1.68e-160 464
MsG0280007608.01.T02 AT2G42950 57.416 418 120 6 31 399 2 410 2.18e-160 461
MsG0280007608.01.T02 AT2G42950 57.416 418 120 6 31 399 2 410 2.18e-160 461
MsG0280007608.01.T02 AT1G29830 55.157 446 116 6 30 400 15 451 2.63e-160 462

Find 36 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATAACTTAGCTGTATT+TGG 0.248093 2:-17990092 MsG0280007608.01.T01:CDS
TACTAGACTCACGACTAAAA+TGG 0.249611 2:-17989660 MsG0280007608.01.T01:three_prime_UTR
GTTGTCCTCACCATCATTAC+TGG 0.275468 2:-17990059 MsG0280007608.01.T01:CDS
ACCATCATTACTGGTTTGTT+TGG 0.316005 2:-17990050 MsG0280007608.01.T01:CDS
AGTTTATTGTGTGAGTTTAA+TGG 0.334427 2:+17989519 None:intergenic
GTTTATTGTGTGAGTTTAAT+GGG 0.386678 2:+17989520 None:intergenic
CTGAGGAACAGGTAGAAGTT+AGG 0.407931 2:-17989894 MsG0280007608.01.T01:three_prime_UTR
GTCGTTTGTCTAGTTTACCT+TGG 0.411114 2:-17989934 MsG0280007608.01.T01:three_prime_UTR
AAACCCCATTGCTGAGGAAC+AGG 0.416666 2:-17989905 MsG0280007608.01.T01:three_prime_UTR
ATATTCAGGACAGAAGCCTT+AGG 0.418636 2:-17990118 MsG0280007608.01.T01:intron
TTGTTTGGTATCAACGTTGA+TGG 0.422323 2:-17990035 MsG0280007608.01.T01:CDS
TCTACCTGTTCCTCAGCAAT+GGG 0.423656 2:+17989901 None:intergenic
TCGTTTGTCTAGTTTACCTT+GGG 0.423663 2:-17989933 MsG0280007608.01.T01:three_prime_UTR
AGCAAACACCCATATGCATT+TGG 0.441945 2:-17990000 MsG0280007608.01.T01:CDS
ATCAACGTTGATGGAATACC+TGG 0.442706 2:-17990026 MsG0280007608.01.T01:CDS
ACTAGACTCACGACTAAAAT+GGG 0.457452 2:-17989659 MsG0280007608.01.T01:intron
GTGAAGACACCAAATGCATA+TGG 0.484615 2:+17989991 None:intergenic
TTCTACCTGTTCCTCAGCAA+TGG 0.484673 2:+17989900 None:intergenic
TATTCAGGACAGAAGCCTTA+GGG 0.490230 2:-17990117 MsG0280007608.01.T01:intron
ACCAAACAAACCAGTAATGA+TGG 0.503542 2:+17990049 None:intergenic
AGAAGTTAGGAAGCTTGAGC+TGG 0.508761 2:-17989881 MsG0280007608.01.T01:three_prime_UTR
CATAACTTAGCTGTATTTGG+TGG 0.520501 2:-17990089 MsG0280007608.01.T01:CDS
CTAAGTTATGTGTCACCCTA+AGG 0.521415 2:+17990102 None:intergenic
TTAGCTGTATTTGGTGGTGT+CGG 0.536298 2:-17990083 MsG0280007608.01.T01:CDS
ATATGGGTGTTTGCTGCCCC+AGG 0.548154 2:+17990008 None:intergenic
TTGTATGTATATTTCAGTGT+TGG 0.576914 2:+17989442 None:intergenic
TGAAGACACCAAATGCATAT+GGG 0.600620 2:+17989992 None:intergenic
CGATAAGCATCACCAGCTGT+AGG 0.606342 2:+17989779 None:intergenic
AATAACTTACCTCCTACAGC+TGG 0.612394 2:-17989791 MsG0280007608.01.T01:three_prime_UTR
TAAGCATCACCAGCTGTAGG+AGG 0.643865 2:+17989782 None:intergenic
TCAACGTTGATGGAATACCT+GGG 0.644489 2:-17990025 MsG0280007608.01.T01:CDS
ACAAACCAGTAATGATGGTG+AGG 0.644578 2:+17990054 None:intergenic
CTACCTGTTCCTCAGCAATG+GGG 0.646159 2:+17989902 None:intergenic
GCTGGTGATGCTTATCGTAG+AGG 0.647196 2:-17989773 MsG0280007608.01.T01:three_prime_UTR
CAACGTTGATGGAATACCTG+GGG 0.680284 2:-17990024 MsG0280007608.01.T01:CDS
TGATGCTTATCGTAGAGGTG+CGG 0.686970 2:-17989768 MsG0280007608.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGATTTTTATTCAAAAT+AGG - Chr2:17995203-17995222 MsG0280007608.01.T01:intron 10.0%
!!! AAATTTTTTGTTTTTTGAAA+AGG - Chr2:17991951-17991970 MsG0280007608.01.T01:intron 10.0%
!!! TTTGAATAAAAATCTTTTTT+GGG + Chr2:17995201-17995220 None:intergenic 10.0%
!!! TTTTGAATAAAAATCTTTTT+TGG + Chr2:17995202-17995221 None:intergenic 10.0%
!! AAAAAAATTCAAATCTTCAT+GGG + Chr2:17992621-17992640 None:intergenic 15.0%
!! ATAACTATTTGTATTCAATA+TGG + Chr2:17993286-17993305 None:intergenic 15.0%
!! TAAAAAAATTCAAATCTTCA+TGG + Chr2:17992622-17992641 None:intergenic 15.0%
!!! TTTAAGTTTTCTTAATAGTT+AGG + Chr2:17990860-17990879 None:intergenic 15.0%
!! AAAAAAGTAAATTTCCATTC+GGG + Chr2:17992743-17992762 None:intergenic 20.0%
!! AAAAGTTGTAATGAATAACA+TGG + Chr2:17991208-17991227 None:intergenic 20.0%
!! AAGGAATAAAAAAAACACAA+GGG - Chr2:17994580-17994599 MsG0280007608.01.T01:intron 20.0%
!! ACAAATATCATGTTAGTATA+GGG + Chr2:17994753-17994772 None:intergenic 20.0%
!! ATAATGAAAATTAAATGTGG+TGG + Chr2:17994173-17994192 None:intergenic 20.0%
!! ATACTGGATTGAATATTAAA+AGG + Chr2:17991001-17991020 None:intergenic 20.0%
!! ATCAATAAGAAACCAAATAT+GGG + Chr2:17992038-17992057 None:intergenic 20.0%
!! CAAAAAAGTAAATTTCCATT+CGG + Chr2:17992744-17992763 None:intergenic 20.0%
!! CATAGTTATTAGAATTGAAT+TGG + Chr2:17990918-17990937 None:intergenic 20.0%
!! GAGATAATGAAAATTAAATG+TGG + Chr2:17994176-17994195 None:intergenic 20.0%
!! TAAAAACTACGATAACTATA+AGG + Chr2:17994321-17994340 None:intergenic 20.0%
!! TATCAATAAGAAACCAAATA+TGG + Chr2:17992039-17992058 None:intergenic 20.0%
!! TATTTCGGAAATCTATATTT+GGG - Chr2:17992471-17992490 MsG0280007608.01.T01:intron 20.0%
!! TGTTGTATGGAATTAAATAT+TGG + Chr2:17993845-17993864 None:intergenic 20.0%
!! TTATTTCGGAAATCTATATT+TGG - Chr2:17992470-17992489 MsG0280007608.01.T01:intron 20.0%
!!! AAGTACAAAATTATTTCTGT+AGG - Chr2:17992272-17992291 MsG0280007608.01.T01:intron 20.0%
!!! ACTTTTCTGTAAAATAACTA+AGG + Chr2:17991844-17991863 None:intergenic 20.0%
!!! AGATTTTCATTTAGATTTTC+AGG - Chr2:17992447-17992466 MsG0280007608.01.T01:intron 20.0%
!!! ATAAGTTAGTTGATAATACA+AGG - Chr2:17991139-17991158 MsG0280007608.01.T01:intron 20.0%
!!! ATTTCAACCTATTTTGATTT+GGG - Chr2:17990177-17990196 MsG0280007608.01.T01:intron 20.0%
!!! CATAATTTTTAAAGTTTGAG+TGG - Chr2:17993887-17993906 MsG0280007608.01.T01:intron 20.0%
!!! TAAGTTAGTTGATAATACAA+GGG - Chr2:17991140-17991159 MsG0280007608.01.T01:intron 20.0%
!!! TAGGTAAAAAAAAGTACATT+TGG - Chr2:17995222-17995241 MsG0280007608.01.T01:intron 20.0%
!!! TATTCATTACAACTTTTCTT+TGG - Chr2:17991211-17991230 MsG0280007608.01.T01:intron 20.0%
!!! TGTCATTTTTAATTATGCAA+TGG - Chr2:17995420-17995439 MsG0280007608.01.T01:CDS 20.0%
!!! TTTAGATTTTCAGGTTATTT+CGG - Chr2:17992456-17992475 MsG0280007608.01.T01:intron 20.0%
! AAAGTTCTACAACAATCTTA+GGG - Chr2:17991104-17991123 MsG0280007608.01.T01:intron 25.0%
! AACAAAAAAATATCAGCCTA+TGG + Chr2:17994394-17994413 None:intergenic 25.0%
! AACCTAATGAATGATCTTAT+AGG + Chr2:17994701-17994720 None:intergenic 25.0%
! AACTTGGAAAATATACTGAA+CGG - Chr2:17991884-17991903 MsG0280007608.01.T01:intron 25.0%
! AGTTTATTGTGTGAGTTTAA+TGG + Chr2:17995389-17995408 None:intergenic 25.0%
! ATGAATTCCTTACATGTATT+AGG - Chr2:17993529-17993548 MsG0280007608.01.T01:CDS 25.0%
! CGTATAGAAAAATATGTGTA+GGG - Chr2:17990717-17990736 MsG0280007608.01.T01:intron 25.0%
! GAAGGAATAAAAAAAACACA+AGG - Chr2:17994579-17994598 MsG0280007608.01.T01:intron 25.0%
! GACAAATATCATGTTAGTAT+AGG + Chr2:17994754-17994773 None:intergenic 25.0%
! GTAACTGTAATGCATATAAA+AGG - Chr2:17991451-17991470 MsG0280007608.01.T01:intron 25.0%
! GTATGGAATTAAATATTGGT+CGG + Chr2:17993841-17993860 None:intergenic 25.0%
! GTTTATTGTGTGAGTTTAAT+GGG + Chr2:17995388-17995407 None:intergenic 25.0%
! TAATTCCATACAACATTGTA+AGG - Chr2:17993850-17993869 MsG0280007608.01.T01:intron 25.0%
! TAGAAAACCCAAATCAAAAT+AGG + Chr2:17990187-17990206 None:intergenic 25.0%
! TCTAATTGAGAAGTAACTTT+AGG + Chr2:17993006-17993025 None:intergenic 25.0%
! TCTACTATCTTCTCTATAAT+AGG - Chr2:17993701-17993720 MsG0280007608.01.T01:intron 25.0%
! TTAATGAGTATAATGTCCAT+TGG - Chr2:17993260-17993279 MsG0280007608.01.T01:CDS 25.0%
! TTCACCTATAAAATCACATT+TGG - Chr2:17992869-17992888 MsG0280007608.01.T01:intron 25.0%
! TTGAATTGAAGTTTATGAAC+AGG - Chr2:17992507-17992526 MsG0280007608.01.T01:intron 25.0%
! TTGACTTTACTCTTATCTAT+AGG - Chr2:17991259-17991278 MsG0280007608.01.T01:intron 25.0%
! TTGTATGTATATTTCAGTGT+TGG + Chr2:17995466-17995485 None:intergenic 25.0%
!! AAAGATAGATATGCTTTTCA+TGG + Chr2:17990973-17990992 None:intergenic 25.0%
!! ACATATTTTTCTATACGCAT+TGG + Chr2:17990714-17990733 None:intergenic 25.0%
!! ACTACCAAATGTGATTTTAT+AGG + Chr2:17992876-17992895 None:intergenic 25.0%
!! ATAATTGATCTGAAGTTATC+AGG - Chr2:17993323-17993342 MsG0280007608.01.T01:intron 25.0%
!! ATTGGTATTTCAAGTCTTAA+TGG - Chr2:17990136-17990155 MsG0280007608.01.T01:intron 25.0%
!! CATATTTTTCTATACGCATT+GGG + Chr2:17990713-17990732 None:intergenic 25.0%
!! TACAAACATTGTTTTCTTTG+TGG - Chr2:17995481-17995500 MsG0280007608.01.T01:CDS 25.0%
!! TATCTGTTTTACTTCTACTT+AGG - Chr2:17994119-17994138 MsG0280007608.01.T01:intron 25.0%
!! TGATGATTTTTATAGCTTTC+TGG + Chr2:17989501-17989520 None:intergenic 25.0%
!! TTTTTGTGACAATTTTCACT+CGG - Chr2:17992758-17992777 MsG0280007608.01.T01:intron 25.0%
!!! ATTTTGATTTGGGTTTTCTA+GGG - Chr2:17990187-17990206 MsG0280007608.01.T01:intron 25.0%
!!! CATTAAGTTTACTTTTTGGT+TGG - Chr2:17993808-17993827 MsG0280007608.01.T01:intron 25.0%
!!! GATTTCAACCTATTTTGATT+TGG - Chr2:17990176-17990195 MsG0280007608.01.T01:intron 25.0%
!!! TAGGCTTTGAAATTTAGTTT+CGG - Chr2:17993094-17993113 MsG0280007608.01.T01:intron 25.0%
!!! TATTTTGATTTGGGTTTTCT+AGG - Chr2:17990186-17990205 MsG0280007608.01.T01:intron 25.0%
AAAAGTAAACTTAATGCTGC+AGG + Chr2:17993804-17993823 None:intergenic 30.0%
AAAATAGAATGGCCCATATT+TGG - Chr2:17992023-17992042 MsG0280007608.01.T01:intron 30.0%
AAAGCAAACTTATAAGTGAG+CGG - Chr2:17990074-17990093 MsG0280007608.01.T01:CDS 30.0%
AATGAAACGCAAAAGTTGAA+AGG + Chr2:17994461-17994480 None:intergenic 30.0%
ACACATAACTTAGCTGTATT+TGG - Chr2:17994813-17994832 MsG0280007608.01.T01:CDS 30.0%
ACACCATGAAGTAAATCAAA+TGG + Chr2:17993636-17993655 None:intergenic 30.0%
ACAGGATAAAAAGAAAACCA+AGG - Chr2:17990406-17990425 MsG0280007608.01.T01:intron 30.0%
ACTTCATTGCTTAAGCTTAT+TGG + Chr2:17990610-17990629 None:intergenic 30.0%
ACTTGGAAAATATACTGAAC+GGG - Chr2:17991885-17991904 MsG0280007608.01.T01:intron 30.0%
AGAACATTTATCTTTGACAC+AGG + Chr2:17991478-17991497 None:intergenic 30.0%
ATAACAACACTTGTATTGTG+TGG + Chr2:17992380-17992399 None:intergenic 30.0%
ATATCATCTTCATCAACATG+AGG + Chr2:17991391-17991410 None:intergenic 30.0%
ATGATATTCCGATTGTACTT+AGG - Chr2:17991404-17991423 MsG0280007608.01.T01:intron 30.0%
ATTAACTTTGAGCCCATATT+GGG + Chr2:17994287-17994306 None:intergenic 30.0%
ATTTAGATCCAATCCAAGTA+TGG - Chr2:17991061-17991080 MsG0280007608.01.T01:intron 30.0%
CAAAATAGTTTAGCAGTACT+TGG + Chr2:17993427-17993446 None:intergenic 30.0%
CAAGTCTTAATGGAAAATAG+TGG - Chr2:17990146-17990165 MsG0280007608.01.T01:intron 30.0%
CAGGATAAAAAGAAAACCAA+GGG - Chr2:17990407-17990426 MsG0280007608.01.T01:intron 30.0%
CAGTTTAAGAAAAATTGCAC+TGG + Chr2:17992404-17992423 None:intergenic 30.0%
CTACTAGTGAGTGTTAATTA+CGG - Chr2:17992958-17992977 MsG0280007608.01.T01:intron 30.0%
CTAGAAATCCAAATTCTTAC+AGG + Chr2:17990311-17990330 None:intergenic 30.0%
CTGACTTAATTCTTATCCAT+AGG - Chr2:17991306-17991325 MsG0280007608.01.T01:intron 30.0%
GAAAGTTCTACAACAATCTT+AGG - Chr2:17991103-17991122 MsG0280007608.01.T01:intron 30.0%
GACCTATAAGATCATTCATT+AGG - Chr2:17994696-17994715 MsG0280007608.01.T01:intron 30.0%
GATTGTTGTAGAACTTTCAA+AGG + Chr2:17991101-17991120 None:intergenic 30.0%
GCGTATAGAAAAATATGTGT+AGG - Chr2:17990716-17990735 MsG0280007608.01.T01:intron 30.0%
GTGTCAAAGATAAATGTTCT+CGG - Chr2:17991478-17991497 MsG0280007608.01.T01:intron 30.0%
TAACTATGAGAGTCAGATAA+AGG - Chr2:17990930-17990949 MsG0280007608.01.T01:intron 30.0%
TAATTCTTATCCATAGGTTC+CGG - Chr2:17991312-17991331 MsG0280007608.01.T01:intron 30.0%
TACAACAAAACTATCAGCAA+AGG + Chr2:17992080-17992099 None:intergenic 30.0%
TAGAGACCAATGAAGATAAA+TGG + Chr2:17991534-17991553 None:intergenic 30.0%
TAGATCCTTACAATGTTGTA+TGG + Chr2:17993858-17993877 None:intergenic 30.0%
TAGTTGTGCTTTAGTTATGT+AGG - Chr2:17991023-17991042 MsG0280007608.01.T01:intron 30.0%
TATGCAAGCTTTCGATTATA+TGG - Chr2:17992098-17992117 MsG0280007608.01.T01:intron 30.0%
TCAAAACCATCCAATGTTTA+AGG + Chr2:17992179-17992198 None:intergenic 30.0%
TCCTTCGAGAAAAAATAGAA+TGG - Chr2:17992012-17992031 MsG0280007608.01.T01:intron 30.0%
TCTTTGTCATCATCAAATGA+AGG + Chr2:17989741-17989760 None:intergenic 30.0%
TGAAACCAACAATACATATG+TGG - Chr2:17991761-17991780 MsG0280007608.01.T01:intron 30.0%
TGAAGATCAGAAACACATAA+TGG + Chr2:17991797-17991816 None:intergenic 30.0%
TGCTTTCCATTTATCTTCAT+TGG - Chr2:17991525-17991544 MsG0280007608.01.T01:intron 30.0%
TTAAAAACTGGTTGATCGAA+GGG - Chr2:17990220-17990239 MsG0280007608.01.T01:intron 30.0%
TTGGATCTAAATGCTGAATA+TGG + Chr2:17991053-17991072 None:intergenic 30.0%
TTGTGTAACCTGTAAGAATT+TGG - Chr2:17990300-17990319 MsG0280007608.01.T01:CDS 30.0%
TTTAAAAACTGGTTGATCGA+AGG - Chr2:17990219-17990238 MsG0280007608.01.T01:intron 30.0%
TTTGTATTCAATATGGCCAA+TGG + Chr2:17993279-17993298 None:intergenic 30.0%
! AATCAGTATTTGAGTTAGAC+TGG + Chr2:17991240-17991259 None:intergenic 30.0%
! AGTTAATTTTATGACCCGAA+TGG - Chr2:17992726-17992745 MsG0280007608.01.T01:intron 30.0%
! ATAACTTCATGTGTTGTTCT+TGG + Chr2:17991645-17991664 None:intergenic 30.0%
! GGTCGTTTAAGTTTAAAAAC+TGG - Chr2:17990208-17990227 MsG0280007608.01.T01:intron 30.0%
! GTTATCGTAGTTTTTATTGC+TGG - Chr2:17994325-17994344 MsG0280007608.01.T01:intron 30.0%
! TAGATTTTCAAATGGTGAGA+TGG - Chr2:17992802-17992821 MsG0280007608.01.T01:intron 30.0%
! TATTAGATGAGGATTTTGCT+GGG + Chr2:17990824-17990843 None:intergenic 30.0%
! TTTAGAGTGTAAAAGTCATG+TGG - Chr2:17993063-17993082 MsG0280007608.01.T01:intron 30.0%
!! AGGCTTTGAAATTTAGTTTC+GGG - Chr2:17993095-17993114 MsG0280007608.01.T01:intron 30.0%
!! CAAATAGTTATTTTCGCTGA+AGG - Chr2:17993295-17993314 MsG0280007608.01.T01:CDS 30.0%
!! CAAGTACTGCTAAACTATTT+TGG - Chr2:17993425-17993444 MsG0280007608.01.T01:CDS 30.0%
!! GCAAAAGTGTTAGAATTTGT+TGG - Chr2:17994235-17994254 MsG0280007608.01.T01:intron 30.0%
!! GCAGCATTAAGTTTACTTTT+TGG - Chr2:17993804-17993823 MsG0280007608.01.T01:intron 30.0%
!! TTCATTTGATGATGACAAAG+AGG - Chr2:17989740-17989759 MsG0280007608.01.T01:three_prime_UTR 30.0%
!! TTTTTGAAAAGGCAATATGC+TGG - Chr2:17991962-17991981 MsG0280007608.01.T01:intron 30.0%
!!! ACTGCTTTTCAAGTCTATTT+TGG - Chr2:17992420-17992439 MsG0280007608.01.T01:CDS 30.0%
!!! GGAAACCATTTGTTTTTACA+AGG - Chr2:17994143-17994162 MsG0280007608.01.T01:intron 30.0%
AAACTAATGCCTTGAGGTAA+CGG + Chr2:17990768-17990787 None:intergenic 35.0%
AAATCAGAAGTTATCAGCAC+AGG - Chr2:17992660-17992679 MsG0280007608.01.T01:intron 35.0%
AAATTGATGAGAAGACCAGA+CGG + Chr2:17989879-17989898 None:intergenic 35.0%
AAGACTTGAAATACCAATGC+TGG + Chr2:17990134-17990153 None:intergenic 35.0%
AAGTCATGTGGAAGCAATTT+AGG - Chr2:17993075-17993094 MsG0280007608.01.T01:intron 35.0%
ACACTGTTCCTAAAAAGATG+AGG + Chr2:17994946-17994965 None:intergenic 35.0%
ACCAAACAAACCAGTAATGA+TGG + Chr2:17994859-17994878 None:intergenic 35.0%
ACCATTGAGATGTATGAGTT+TGG - Chr2:17993226-17993245 MsG0280007608.01.T01:CDS 35.0%
ACTAGACTCACGACTAAAAT+GGG - Chr2:17995246-17995265 MsG0280007608.01.T01:CDS 35.0%
ACTTAGACAAAAGCCCAATA+TGG - Chr2:17994271-17994290 MsG0280007608.01.T01:intron 35.0%
AGTATAACTATTCCCTTGTG+TGG + Chr2:17992940-17992959 None:intergenic 35.0%
ATCCTCATCTAATAGGAACT+TGG - Chr2:17990830-17990849 MsG0280007608.01.T01:intron 35.0%
ATGTCCACTATCTTTACATG+TGG + Chr2:17992237-17992256 None:intergenic 35.0%
CAAGTCAGAAAAATGTTTCG+AGG - Chr2:17995091-17995110 MsG0280007608.01.T01:CDS 35.0%
CAGCAAAATCCTCATCTAAT+AGG - Chr2:17990823-17990842 MsG0280007608.01.T01:intron 35.0%
CATAACTTAGCTGTATTTGG+TGG - Chr2:17994816-17994835 MsG0280007608.01.T01:CDS 35.0%
CATCTTGAATGGTAAACAGA+CGG + Chr2:17994637-17994656 None:intergenic 35.0%
CCATGAAGTAAATCAAATGG+AGG + Chr2:17993633-17993652 None:intergenic 35.0%
CGTGAATCTGCTAAATATTC+AGG - Chr2:17994773-17994792 MsG0280007608.01.T01:intron 35.0%
CTATTCAAACAGACCTTCAA+TGG - Chr2:17990547-17990566 MsG0280007608.01.T01:intron 35.0%
CTGTGAACCTAATACATGTA+AGG + Chr2:17993539-17993558 None:intergenic 35.0%
CTTAGACAAAAGCCCAATAT+GGG - Chr2:17994272-17994291 MsG0280007608.01.T01:intron 35.0%
CTTCTCTTGATTCTCAAATC+AGG - Chr2:17994195-17994214 MsG0280007608.01.T01:intron 35.0%
GAAAACTGTCAATCAAGTGT+GGG + Chr2:17992582-17992601 None:intergenic 35.0%
GAAACCATTGCATTAGATTC+AGG + Chr2:17992157-17992176 None:intergenic 35.0%
GAGATCCACATATGTATTGT+TGG + Chr2:17991769-17991788 None:intergenic 35.0%
GATTAACTTTGAGCCCATAT+TGG + Chr2:17994288-17994307 None:intergenic 35.0%
GCAATGGTTTCCTTAAACAT+TGG - Chr2:17992166-17992185 MsG0280007608.01.T01:intron 35.0%
GGACATGCATCTTTGAATAT+CGG + Chr2:17989659-17989678 None:intergenic 35.0%
GGAGCAAACTTACATTTATC+TGG - Chr2:17991983-17992002 MsG0280007608.01.T01:intron 35.0%
GTATGTTGTATTTCCAGCAT+TGG - Chr2:17990118-17990137 MsG0280007608.01.T01:intron 35.0%
GTTTAAACTAGACCACACAA+GGG - Chr2:17992925-17992944 MsG0280007608.01.T01:intron 35.0%
TACAACATACCTCATAGAGA+AGG + Chr2:17990108-17990127 None:intergenic 35.0%
TACACCACATGTAAAGATAG+TGG - Chr2:17992230-17992249 MsG0280007608.01.T01:intron 35.0%
TACTAGACTCACGACTAAAA+TGG - Chr2:17995245-17995264 MsG0280007608.01.T01:CDS 35.0%
TCCAAACTCATACATCTCAA+TGG + Chr2:17993230-17993249 None:intergenic 35.0%
TCCTCATCTAATAGGAACTT+GGG - Chr2:17990831-17990850 MsG0280007608.01.T01:intron 35.0%
TGAAGACACCAAATGCATAT+GGG + Chr2:17994916-17994935 None:intergenic 35.0%
TGAATATTACAGTGGATGAG+TGG + Chr2:17993778-17993797 None:intergenic 35.0%
TGATCTTTGCTCTTGTAACT+TGG - Chr2:17991868-17991887 MsG0280007608.01.T01:intron 35.0%
TGGTCAATATTATCTGCCAT+AGG - Chr2:17994375-17994394 MsG0280007608.01.T01:intron 35.0%
TGGTTTCCTTAAACATTGGA+TGG - Chr2:17992170-17992189 MsG0280007608.01.T01:intron 35.0%
TGTGTTTGCAAGTCAACTAA+GGG + Chr2:17992344-17992363 None:intergenic 35.0%
TGTTCCTAAAAAGATGAGGA+TGG + Chr2:17994942-17994961 None:intergenic 35.0%
TGTTTAAACTAGACCACACA+AGG - Chr2:17992924-17992943 MsG0280007608.01.T01:intron 35.0%
TTCAGCAAAATTCTGTGCAT+TGG + Chr2:17990482-17990501 None:intergenic 35.0%
TTGTCCTGAATCTAATGCAA+TGG - Chr2:17992150-17992169 MsG0280007608.01.T01:intron 35.0%
TTGTTTGGTATCAACGTTGA+TGG - Chr2:17994870-17994889 MsG0280007608.01.T01:CDS 35.0%
! ACTCGGTGAGAGAATAAAAT+GGG - Chr2:17992775-17992794 MsG0280007608.01.T01:intron 35.0%
! AGAACTTGTTCAAGTAGTTC+AGG - Chr2:17989847-17989866 MsG0280007608.01.T01:three_prime_UTR 35.0%
! CAACTTTTGCGTTTCATTAC+AGG - Chr2:17994463-17994482 MsG0280007608.01.T01:intron 35.0%
! CCTCCATTTGATTTACTTCA+TGG - Chr2:17993630-17993649 MsG0280007608.01.T01:intron 35.0%
! CTATTAGATGAGGATTTTGC+TGG + Chr2:17990825-17990844 None:intergenic 35.0%
! CTGTTTTACTTCTACTTAGG+CGG - Chr2:17994122-17994141 MsG0280007608.01.T01:intron 35.0%
! GATAGATATGCTTTTCATGG+AGG + Chr2:17990970-17990989 None:intergenic 35.0%
! GCAAGCCTTGTAAAAACAAA+TGG + Chr2:17994151-17994170 None:intergenic 35.0%
! GTCATTGAATGTCTCTTTTG+AGG + Chr2:17990583-17990602 None:intergenic 35.0%
! TCCTTTCATCCATTTTGCTT+GGG - Chr2:17993944-17993963 MsG0280007608.01.T01:intron 35.0%
! TCGTTTGTCTAGTTTACCTT+GGG - Chr2:17994972-17994991 MsG0280007608.01.T01:CDS 35.0%
! TGACAGTTTTCCCTTTGATT+AGG - Chr2:17992591-17992610 MsG0280007608.01.T01:intron 35.0%
! TGGGGGTTTAGATTTTCAAA+TGG - Chr2:17992794-17992813 MsG0280007608.01.T01:intron 35.0%
! TGTGAGATCTTCTTTTCATG+TGG + Chr2:17989717-17989736 None:intergenic 35.0%
! TTACTTCATGGTGTTTCTGT+AGG - Chr2:17993642-17993661 MsG0280007608.01.T01:intron 35.0%
! TTCCTTTCATCCATTTTGCT+TGG - Chr2:17993943-17993962 MsG0280007608.01.T01:intron 35.0%
! TTTATCCTGTCCACTTCTTT+TGG + Chr2:17990396-17990415 None:intergenic 35.0%
! TTTTCATGGAGGATACTGTA+CGG + Chr2:17990959-17990978 None:intergenic 35.0%
!! ACACTTTTGCTTTTCGCAAA+TGG + Chr2:17994225-17994244 None:intergenic 35.0%
!! ACCATCATTACTGGTTTGTT+TGG - Chr2:17994855-17994874 MsG0280007608.01.T01:CDS 35.0%
!! ATTGAATGTCTCTTTTGAGG+AGG + Chr2:17990580-17990599 None:intergenic 35.0%
!! CTACATAGATCTGCTTTTCT+TGG + Chr2:17990354-17990373 None:intergenic 35.0%
!! TGGATTTCTAGTCGTTCATA+CGG - Chr2:17990320-17990339 MsG0280007608.01.T01:CDS 35.0%
!! TGTGCTTTTGAATTTGTTCG+AGG - Chr2:17989570-17989589 MsG0280007608.01.T01:three_prime_UTR 35.0%
!! TTGAACAAGTTCTGAGATTC+TGG + Chr2:17989840-17989859 None:intergenic 35.0%
!! TTGAATGTCTCTTTTGAGGA+GGG + Chr2:17990579-17990598 None:intergenic 35.0%
!!! GCCATTCTATTTTTTCTCGA+AGG + Chr2:17992016-17992035 None:intergenic 35.0%
AACCATGGACCAAATGGTTA+AGG + Chr2:17990681-17990700 None:intergenic 40.0%
AAGAAAACCAAGGGTTCCTT+AGG - Chr2:17990416-17990435 MsG0280007608.01.T01:intron 40.0%
AAGATGCATGTCCCTTCAAA+TGG - Chr2:17989666-17989685 MsG0280007608.01.T01:three_prime_UTR 40.0%
AAGGGTTGCAGTATATGTGA+GGG - Chr2:17990238-17990257 MsG0280007608.01.T01:intron 40.0%
AATAACTTACCTCCTACAGC+TGG - Chr2:17995114-17995133 MsG0280007608.01.T01:CDS 40.0%
AATTGACCAAAACCAGCTTG+AGG - Chr2:17993359-17993378 MsG0280007608.01.T01:intron 40.0%
ACAACACTTGTATTGTGTGG+TGG + Chr2:17992377-17992396 None:intergenic 40.0%
ACATCAACACAATCAACCCT+AGG + Chr2:17990449-17990468 None:intergenic 40.0%
ACCAGTCAAACCAAAAGAAG+TGG - Chr2:17990383-17990402 MsG0280007608.01.T01:intron 40.0%
ACCATGGACCAAATGGTTAA+GGG + Chr2:17990680-17990699 None:intergenic 40.0%
ACCCAAGCAAAATGGATGAA+AGG + Chr2:17993948-17993967 None:intergenic 40.0%
AGATAAGTCCATCTGTCCAA+AGG + Chr2:17989551-17989570 None:intergenic 40.0%
AGATAGTAGAATCTCGACAC+AGG + Chr2:17993691-17993710 None:intergenic 40.0%
AGATCCAACATACAGAGTGT+TGG + Chr2:17993999-17994018 None:intergenic 40.0%
AGCAAACACCCATATGCATT+TGG - Chr2:17994905-17994924 MsG0280007608.01.T01:CDS 40.0%
AGCTTCTCCAACATCTGAAA+GGG - Chr2:17994535-17994554 MsG0280007608.01.T01:intron 40.0%
ATATTCAGGACAGAAGCCTT+AGG - Chr2:17994787-17994806 MsG0280007608.01.T01:intron 40.0%
ATCATTGGGTACCAATTGGA+TGG - Chr2:17989813-17989832 MsG0280007608.01.T01:three_prime_UTR 40.0%
ATTGACCAAAACCAGCTTGA+GGG - Chr2:17993360-17993379 MsG0280007608.01.T01:intron 40.0%
CACATTCTTCACGAAACAAG+TGG - Chr2:17989472-17989491 MsG0280007608.01.T01:three_prime_UTR 40.0%
CATGGGTTCTCCTAATCAAA+GGG + Chr2:17992604-17992623 None:intergenic 40.0%
CCTCCATTACACCATTTGAA+GGG + Chr2:17989680-17989699 None:intergenic 40.0%
CTAAAGCACAACTAGCATAC+TGG + Chr2:17991017-17991036 None:intergenic 40.0%
CTAAGTTATGTGTCACCCTA+AGG + Chr2:17994806-17994825 None:intergenic 40.0%
CTCGGTGAGAGAATAAAATG+GGG - Chr2:17992776-17992795 MsG0280007608.01.T01:intron 40.0%
CTGTGTTTGCAAGTCAACTA+AGG + Chr2:17992345-17992364 None:intergenic 40.0%
GAATGGAGCAAGAAACTTGT+TGG - Chr2:17994557-17994576 MsG0280007608.01.T01:intron 40.0%
GCAGGATGTGAATATTACAG+TGG + Chr2:17993786-17993805 None:intergenic 40.0%
GCTCTGCATAACATCTTGAA+TGG + Chr2:17994648-17994667 None:intergenic 40.0%
GGAAAACTGTCAATCAAGTG+TGG + Chr2:17992583-17992602 None:intergenic 40.0%
GTGAAGACACCAAATGCATA+TGG + Chr2:17994917-17994936 None:intergenic 40.0%
TAATACAAGGGATCTGCTGA+TGG - Chr2:17991152-17991171 MsG0280007608.01.T01:intron 40.0%
TACAGGTTATCAGAGTGAAG+TGG - Chr2:17994480-17994499 MsG0280007608.01.T01:intron 40.0%
TATTCAGGACAGAAGCCTTA+GGG - Chr2:17994788-17994807 MsG0280007608.01.T01:intron 40.0%
TCAAACCAAAAGAAGTGGAC+AGG - Chr2:17990388-17990407 MsG0280007608.01.T01:intron 40.0%
TCATGCTAGAGATCCTAATC+CGG - Chr2:17989518-17989537 MsG0280007608.01.T01:three_prime_UTR 40.0%
TCATGGGTTCTCCTAATCAA+AGG + Chr2:17992605-17992624 None:intergenic 40.0%
TCGGTGAGAGAATAAAATGG+GGG - Chr2:17992777-17992796 MsG0280007608.01.T01:intron 40.0%
TCTCGGTATAACAGAAGTTC+AGG - Chr2:17991495-17991514 MsG0280007608.01.T01:intron 40.0%
TCTGTTTGCGATATTTGACG+AGG + Chr2:17989622-17989641 None:intergenic 40.0%
TGCAGTATATGTGAGGGTAA+GGG - Chr2:17990244-17990263 MsG0280007608.01.T01:CDS 40.0%
TGCCAAGACCTAAGTACAAT+CGG + Chr2:17991415-17991434 None:intergenic 40.0%
TGTCCCTTCAAATGGTGTAA+TGG - Chr2:17989674-17989693 MsG0280007608.01.T01:three_prime_UTR 40.0%
TTAATACCTGCAACCAAGCT+CGG + Chr2:17994676-17994695 None:intergenic 40.0%
TTCCGATTGTACTTAGGTCT+TGG - Chr2:17991410-17991429 MsG0280007608.01.T01:intron 40.0%
TTGCAGTATATGTGAGGGTA+AGG - Chr2:17990243-17990262 MsG0280007608.01.T01:CDS 40.0%
! ACAAACCAGTAATGATGGTG+AGG + Chr2:17994854-17994873 None:intergenic 40.0%
! ACAGCCATCCTCATCTTTTT+AGG - Chr2:17994935-17994954 MsG0280007608.01.T01:CDS 40.0%
! ATCAAAGCCTTTTGCCACTA+TGG - Chr2:17993491-17993510 MsG0280007608.01.T01:CDS 40.0%
! ATCAACGTTGATGGAATACC+TGG - Chr2:17994879-17994898 MsG0280007608.01.T01:CDS 40.0%
! CACTCGGTGAGAGAATAAAA+TGG - Chr2:17992774-17992793 MsG0280007608.01.T01:intron 40.0%
! GTAACGGAGATCCATTTAAG+GGG + Chr2:17990752-17990771 None:intergenic 40.0%
! GTCGTTTGTCTAGTTTACCT+TGG - Chr2:17994971-17994990 MsG0280007608.01.T01:CDS 40.0%
! TCAAAGCCTTTTGCCACTAT+GGG - Chr2:17993492-17993511 MsG0280007608.01.T01:CDS 40.0%
! TCAACGTTGATGGAATACCT+GGG - Chr2:17994880-17994899 MsG0280007608.01.T01:CDS 40.0%
! TTTTCTATACGCATTGGGCA+GGG + Chr2:17990708-17990727 None:intergenic 40.0%
! TTTTTCTATACGCATTGGGC+AGG + Chr2:17990709-17990728 None:intergenic 40.0%
!! AAGTTTTCAGAGCGCTTTAG+AGG + Chr2:17993574-17993593 None:intergenic 40.0%
!! AGGTAACGGAGATCCATTTA+AGG + Chr2:17990754-17990773 None:intergenic 40.0%
!! AGTTGACTTGCAAACACAGA+TGG - Chr2:17992346-17992365 MsG0280007608.01.T01:intron 40.0%
!! ATTCTGTGTGTTGCTTTGTC+AGG - Chr2:17991590-17991609 MsG0280007608.01.T01:intron 40.0%
!! CTAAAGCGCTCTGAAAACTT+TGG - Chr2:17993574-17993593 MsG0280007608.01.T01:CDS 40.0%
!! CTTCTTTTCATGTGGTCTTG+TGG + Chr2:17989709-17989728 None:intergenic 40.0%
!! GCTTTTGAAAACACAAGCAG+TGG - Chr2:17994347-17994366 MsG0280007608.01.T01:intron 40.0%
!! GGTAACGGAGATCCATTTAA+GGG + Chr2:17990753-17990772 None:intergenic 40.0%
!! TTAGCTGTATTTGGTGGTGT+CGG - Chr2:17994822-17994841 MsG0280007608.01.T01:CDS 40.0%
!!! TCCACTTCTTTTGGTTTGAC+TGG + Chr2:17990387-17990406 None:intergenic 40.0%
AAACACAAGCAGTGGCAAAG+TGG - Chr2:17994355-17994374 MsG0280007608.01.T01:intron 45.0%
AAAGGAGCTTCTATGTGCAG+CGG + Chr2:17994443-17994462 None:intergenic 45.0%
AATGGATCTCCGTTACCTCA+AGG - Chr2:17990756-17990775 MsG0280007608.01.T01:intron 45.0%
ACCATAGCACCCAAGCAAAA+TGG + Chr2:17993956-17993975 None:intergenic 45.0%
ACTGCACACAATGCATATGC+TGG - Chr2:17991925-17991944 MsG0280007608.01.T01:intron 45.0%
AGAAGTTAGGAAGCTTGAGC+TGG - Chr2:17995024-17995043 MsG0280007608.01.T01:CDS 45.0%
AGAGCATGTGGGTGATCATT+GGG - Chr2:17989799-17989818 MsG0280007608.01.T01:three_prime_UTR 45.0%
AGATCTAGCAGCTCCCTATT+GGG - Chr2:17989934-17989953 MsG0280007608.01.T01:three_prime_UTR 45.0%
AGTTTCTGCAGTTGCATGCA+GGG - Chr2:17990783-17990802 MsG0280007608.01.T01:intron 45.0%
CAAAGAGGTCTCGATCTTTC+AGG - Chr2:17989755-17989774 MsG0280007608.01.T01:three_prime_UTR 45.0%
CAAATGGAGGACAACTCGAT+AGG + Chr2:17993620-17993639 None:intergenic 45.0%
CACAACGACCATACTTGGAT+TGG + Chr2:17991072-17991091 None:intergenic 45.0%
CACACAGATCTTTCTGTTGC+AGG - Chr2:17992833-17992852 MsG0280007608.01.T01:intron 45.0%
CAGCATGCTAGTTATGGATG+AGG + Chr2:17990633-17990652 None:intergenic 45.0%
CATCCATAACTAGCATGCTG+TGG - Chr2:17990633-17990652 MsG0280007608.01.T01:intron 45.0%
CATGCTAGAGATCCTAATCC+GGG - Chr2:17989519-17989538 MsG0280007608.01.T01:three_prime_UTR 45.0%
CCCTTCAAATGGTGTAATGG+AGG - Chr2:17989677-17989696 MsG0280007608.01.T01:three_prime_UTR 45.0%
CTCAAAGCTAAACCAACAGC+AGG + Chr2:17990049-17990068 None:intergenic 45.0%
CTCCAACATCTGAAAGGGAA+TGG - Chr2:17994540-17994559 MsG0280007608.01.T01:intron 45.0%
CTCCATTCCCTTTCAGATGT+TGG + Chr2:17994545-17994564 None:intergenic 45.0%
CTCTCCAACACTCTGTATGT+TGG - Chr2:17993992-17994011 MsG0280007608.01.T01:intron 45.0%
CTGAGGAACAGGTAGAAGTT+AGG - Chr2:17995011-17995030 MsG0280007608.01.T01:CDS 45.0%
CTGCAGAAACTAATGCCTTG+AGG + Chr2:17990774-17990793 None:intergenic 45.0%
GAAGGGTTGCAGTATATGTG+AGG - Chr2:17990237-17990256 MsG0280007608.01.T01:intron 45.0%
GAATCTCGACACAGGTAGTT+TGG + Chr2:17993683-17993702 None:intergenic 45.0%
GAGATTCTGGACCATCCAAT+TGG + Chr2:17989827-17989846 None:intergenic 45.0%
GAGCTTCTCCAACATCTGAA+AGG - Chr2:17994534-17994553 MsG0280007608.01.T01:intron 45.0%
GCAAACAGACCACATTCTGA+CGG - Chr2:17989633-17989652 MsG0280007608.01.T01:intron 45.0%
GCAGTATATGTGAGGGTAAG+GGG - Chr2:17990245-17990264 MsG0280007608.01.T01:CDS 45.0%
GCCCAAGTTCCTATTAGATG+AGG + Chr2:17990835-17990854 None:intergenic 45.0%
GCCTCCATTACACCATTTGA+AGG + Chr2:17989681-17989700 None:intergenic 45.0%
GGAGAAGTCAACCCCTTAAA+TGG - Chr2:17990738-17990757 MsG0280007608.01.T01:intron 45.0%
GGCAAATGACATTTGCGACA+AGG - Chr2:17991173-17991192 MsG0280007608.01.T01:intron 45.0%
GGTGATCATTGGGTACCAAT+TGG - Chr2:17989809-17989828 MsG0280007608.01.T01:three_prime_UTR 45.0%
GTTGTCCTCACCATCATTAC+TGG - Chr2:17994846-17994865 MsG0280007608.01.T01:CDS 45.0%
TAGAGCACAACGACCATACT+TGG + Chr2:17991077-17991096 None:intergenic 45.0%
TAGTTTCTGCAGTTGCATGC+AGG - Chr2:17990782-17990801 MsG0280007608.01.T01:intron 45.0%
TCTACCTGTTCCTCAGCAAT+GGG + Chr2:17995007-17995026 None:intergenic 45.0%
TGAGGGTAAGGGGACATTTA+AGG - Chr2:17990255-17990274 MsG0280007608.01.T01:CDS 45.0%
TGATGCTTATCGTAGAGGTG+CGG - Chr2:17995137-17995156 MsG0280007608.01.T01:intron 45.0%
TGCTTGAGCCCTTAACCATT+TGG - Chr2:17990669-17990688 MsG0280007608.01.T01:intron 45.0%
TGTCAGGAGCTTCTTTCTAC+TGG - Chr2:17991606-17991625 MsG0280007608.01.T01:intron 45.0%
TTCCTTAGGCATCACACCTA+GGG - Chr2:17990430-17990449 MsG0280007608.01.T01:intron 45.0%
TTCTACCTGTTCCTCAGCAA+TGG + Chr2:17995008-17995027 None:intergenic 45.0%
! AAAGCCTTTTGCCACTATGG+GGG - Chr2:17993494-17993513 MsG0280007608.01.T01:CDS 45.0%
! AAGAGCATGTGGGTGATCAT+TGG - Chr2:17989798-17989817 MsG0280007608.01.T01:three_prime_UTR 45.0%
! AATTCCCCAGAAGAGCATGT+GGG - Chr2:17989788-17989807 MsG0280007608.01.T01:three_prime_UTR 45.0%
! CAAAGCCTTTTGCCACTATG+GGG - Chr2:17993493-17993512 MsG0280007608.01.T01:CDS 45.0%
! CAACGTTGATGGAATACCTG+GGG - Chr2:17994881-17994900 MsG0280007608.01.T01:CDS 45.0%
! GATGAAGCACCTTCTCTATG+AGG - Chr2:17990096-17990115 MsG0280007608.01.T01:CDS 45.0%
! GGATTTTGCTGGGTAAACCA+AGG + Chr2:17990814-17990833 None:intergenic 45.0%
! TAATTCCCCAGAAGAGCATG+TGG - Chr2:17989787-17989806 MsG0280007608.01.T01:three_prime_UTR 45.0%
! TCCATTTTGCTTGGGTGCTA+TGG - Chr2:17993952-17993971 MsG0280007608.01.T01:intron 45.0%
! TGCTCTTCTGGGGAATTAGA+TGG + Chr2:17989785-17989804 None:intergenic 45.0%
!! AATGTCTCTTTTGAGGAGGG+AGG + Chr2:17990576-17990595 None:intergenic 45.0%
!! ACAGAGTGTTGGAGAGATAG+AGG + Chr2:17993988-17994007 None:intergenic 45.0%
!! CAGAGTGTTGGAGAGATAGA+GGG + Chr2:17993987-17994006 None:intergenic 45.0%
!! GGAGCAAGAAACTTGTTGGA+AGG - Chr2:17994561-17994580 MsG0280007608.01.T01:intron 45.0%
!! TTTTGCTTGGGTGCTATGGT+TGG - Chr2:17993956-17993975 MsG0280007608.01.T01:intron 45.0%
AAACCCCATTGCTGAGGAAC+AGG - Chr2:17995000-17995019 MsG0280007608.01.T01:CDS 50.0%
AACCCTAGGTGTGATGCCTA+AGG + Chr2:17990435-17990454 None:intergenic 50.0%
ACCAAAACCAGCTTGAGGGT+TGG - Chr2:17993364-17993383 MsG0280007608.01.T01:intron 50.0%
ATCACCCACATGCTCTTCTG+GGG + Chr2:17989795-17989814 None:intergenic 50.0%
CAAAGGTCACTTCCCGGATT+AGG + Chr2:17989534-17989553 None:intergenic 50.0%
CAATGGCTACATCCTGCTGT+TGG - Chr2:17990034-17990053 MsG0280007608.01.T01:CDS 50.0%
CAGATCTAGCAGCTCCCTAT+TGG - Chr2:17989933-17989952 MsG0280007608.01.T01:three_prime_UTR 50.0%
CAGGAGCTTCTTTCTACTGG+AGG - Chr2:17991609-17991628 MsG0280007608.01.T01:intron 50.0%
CGATAAGCATCACCAGCTGT+AGG + Chr2:17995129-17995148 None:intergenic 50.0%
CTAATCCGGGAAGTGACCTT+TGG - Chr2:17989532-17989551 MsG0280007608.01.T01:three_prime_UTR 50.0%
CTACCTGTTCCTCAGCAATG+GGG + Chr2:17995006-17995025 None:intergenic 50.0%
CTTGGCTCAGCAATGCTCAA+TGG - Chr2:17990017-17990036 MsG0280007608.01.T01:CDS 50.0%
GAAGAGCAAGAAGCAGTTCG+TGG - Chr2:17994611-17994630 MsG0280007608.01.T01:intron 50.0%
GAATATCGGCCGTCAGAATG+TGG + Chr2:17989645-17989664 None:intergenic 50.0%
GACGAGGATCTCGACTTAAC+TGG + Chr2:17989606-17989625 None:intergenic 50.0%
GAGCTCTTGGGACAATCAGT+GGG - Chr2:17991361-17991380 MsG0280007608.01.T01:intron 50.0%
GATCACCCACATGCTCTTCT+GGG + Chr2:17989796-17989815 None:intergenic 50.0%
GCCCTTAACCATTTGGTCCA+TGG - Chr2:17990676-17990695 MsG0280007608.01.T01:intron 50.0%
GCTGAAAAACCCCATTGCTG+AGG - Chr2:17994994-17995013 MsG0280007608.01.T01:CDS 50.0%
GGAAGTGACCTTTGGACAGA+TGG - Chr2:17989540-17989559 MsG0280007608.01.T01:three_prime_UTR 50.0%
GGATGGAACCATGGACCAAA+TGG + Chr2:17990687-17990706 None:intergenic 50.0%
GTTCCTTAGGCATCACACCT+AGG - Chr2:17990429-17990448 MsG0280007608.01.T01:intron 50.0%
TAAGCATCACCAGCTGTAGG+AGG + Chr2:17995126-17995145 None:intergenic 50.0%
TAATGAGCCAACCCTCAAGC+TGG + Chr2:17993374-17993393 None:intergenic 50.0%
TCTGTCCAAAGGTCACTTCC+CGG + Chr2:17989540-17989559 None:intergenic 50.0%
TGAGCCAAGCCTCAACAACA+GGG + Chr2:17990006-17990025 None:intergenic 50.0%
TGAGCTCTTGGGACAATCAG+TGG - Chr2:17991360-17991379 MsG0280007608.01.T01:intron 50.0%
TGATCACCCACATGCTCTTC+TGG + Chr2:17989797-17989816 None:intergenic 50.0%
TGTGATGCCTAAGGAACCCT+TGG + Chr2:17990426-17990445 None:intergenic 50.0%
TTGCATGCAGGGAGATACCT+TGG - Chr2:17990794-17990813 MsG0280007608.01.T01:intron 50.0%
! AAGCCTTTTGCCACTATGGG+GGG - Chr2:17993495-17993514 MsG0280007608.01.T01:CDS 50.0%
! AGGGCTGCTATTTGAGCTCT+TGG - Chr2:17991348-17991367 MsG0280007608.01.T01:intron 50.0%
! AGTGTTGGAGAGATAGAGGG+AGG + Chr2:17993984-17994003 None:intergenic 50.0%
! GAGGTCTCGATCTTTCAGGT+TGG - Chr2:17989759-17989778 MsG0280007608.01.T01:three_prime_UTR 50.0%
! GCTGGTGATGCTTATCGTAG+AGG - Chr2:17995132-17995151 MsG0280007608.01.T01:intron 50.0%
! GGGCTGCTATTTGAGCTCTT+GGG - Chr2:17991349-17991368 MsG0280007608.01.T01:intron 50.0%
!! AGCGCTCTGAAAACTTTGGC+TGG - Chr2:17993578-17993597 MsG0280007608.01.T01:CDS 50.0%
!! CAATGGGGTTTTTCAGCCCA+AGG + Chr2:17994991-17995010 None:intergenic 50.0%
!! CAGAGCGCTTTAGAGGTGAA+CGG + Chr2:17993567-17993586 None:intergenic 50.0%
!! TAGTTCAGGTTGATGCCGTC+TGG - Chr2:17989861-17989880 MsG0280007608.01.T01:three_prime_UTR 50.0%
AGGAGGGAGGAAGCCATTGA+AGG + Chr2:17990563-17990582 None:intergenic 55.0%
ATTGGGCAGGGATGGAACCA+TGG + Chr2:17990696-17990715 None:intergenic 55.0%
CTATACGCATTGGGCAGGGA+TGG + Chr2:17990704-17990723 None:intergenic 55.0%
CTGAGCCAAGCCTCAACAAC+AGG + Chr2:17990007-17990026 None:intergenic 55.0%
GAAACGTGGCACCACCATCT+AGG + Chr2:17989974-17989993 None:intergenic 55.0%
GCAACTCTCACCGGAACCTA+TGG + Chr2:17991325-17991344 None:intergenic 55.0%
GCGCCACAGCATGCTAGTTA+TGG + Chr2:17990639-17990658 None:intergenic 55.0%
GTCACCCTGTTGTTGAGGCT+TGG - Chr2:17989999-17990018 MsG0280007608.01.T01:CDS 55.0%
TAGGTTCCGGTGAGAGTTGC+AGG - Chr2:17991325-17991344 MsG0280007608.01.T01:intron 55.0%
TATCGTCCCACCGTGAGAGA+CGG + Chr2:17991683-17991702 None:intergenic 55.0%
TGCAGGTCACCCTGTTGTTG+AGG - Chr2:17989994-17990013 MsG0280007608.01.T01:CDS 55.0%
TTCCGGTGAGAGTTGCAGGA+GGG - Chr2:17991329-17991348 MsG0280007608.01.T01:intron 55.0%
! AGCTTGCTTCCCGTCTCTCA+CGG - Chr2:17991670-17991689 MsG0280007608.01.T01:intron 55.0%
! ATATGGGTGTTTGCTGCCCC+AGG + Chr2:17994900-17994919 None:intergenic 55.0%
! CTTTTGCCACTATGGGGGGT+CGG - Chr2:17993499-17993518 MsG0280007608.01.T01:CDS 55.0%
!! GCCAACCCTCAAGCTGGTTT+TGG + Chr2:17993368-17993387 None:intergenic 55.0%
AGCCCTCCTGCAACTCTCAC+CGG + Chr2:17991334-17991353 None:intergenic 60.0%
ATCGTCCCACCGTGAGAGAC+GGG + Chr2:17991682-17991701 None:intergenic 60.0%
CACTGTCCGAGCTTGGTTGC+AGG - Chr2:17994667-17994686 MsG0280007608.01.T01:intron 60.0%
CAGGGTGACCTGCAGAAACG+TGG + Chr2:17989988-17990007 None:intergenic 60.0%
CCAGCTGGACGCTCCCAATA+GGG + Chr2:17989950-17989969 None:intergenic 60.0%
CGACCCCCCATAGTGGCAAA+AGG + Chr2:17993501-17993520 None:intergenic 60.0%
GTCTCTCACGGTGGGACGAT+AGG - Chr2:17991682-17991701 MsG0280007608.01.T01:intron 60.0%
GTTCCGGTGAGAGTTGCAGG+AGG - Chr2:17991328-17991347 MsG0280007608.01.T01:intron 60.0%
TGCTTCCCGTCTCTCACGGT+GGG - Chr2:17991674-17991693 MsG0280007608.01.T01:intron 60.0%
TTGCTTCCCGTCTCTCACGG+TGG - Chr2:17991673-17991692 MsG0280007608.01.T01:intron 60.0%
!! CCTATTGGGAGCGTCCAGCT+GGG - Chr2:17989948-17989967 MsG0280007608.01.T01:three_prime_UTR 60.0%
!! TGCAGAGCACTGTCCGAGCT+TGG - Chr2:17994660-17994679 MsG0280007608.01.T01:intron 60.0%
!! TGGTGGTGCCACGTTTCTGC+AGG - Chr2:17989977-17989996 MsG0280007608.01.T01:CDS 60.0%
ACATCGCCGACCCCCCATAG+TGG + Chr2:17993508-17993527 None:intergenic 65.0%
AGCGTCCAGCTGGGCCTAGA+TGG - Chr2:17989957-17989976 MsG0280007608.01.T01:exon 65.0%
CACCACCATCTAGGCCCAGC+TGG + Chr2:17989965-17989984 None:intergenic 65.0%
CCCAGCTGGACGCTCCCAAT+AGG + Chr2:17989951-17989970 None:intergenic 65.0%
GTCCAGCTGGGCCTAGATGG+TGG - Chr2:17989960-17989979 MsG0280007608.01.T01:exon 65.0%
!! CCCTATTGGGAGCGTCCAGC+TGG - Chr2:17989947-17989966 MsG0280007608.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 17989423 17995504 17989423 ID=MsG0280007608.01;Name=MsG0280007608.01
Chr2 mRNA 17989423 17995504 17989423 ID=MsG0280007608.01.T01;Parent=MsG0280007608.01;Name=MsG0280007608.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0.71|0.62|1|0.85|0.75|8|501|413
Chr2 exon 17989423 17989612 17989423 ID=MsG0280007608.01.T01:exon:10891;Parent=MsG0280007608.01.T01
Chr2 exon 17989660 17990132 17989660 ID=MsG0280007608.01.T01:exon:10890;Parent=MsG0280007608.01.T01
Chr2 CDS 17995240 17995504 17995240 ID=MsG0280007608.01.T01:cds;Parent=MsG0280007608.01.T01
Chr2 CDS 17994810 17995150 17994810 ID=MsG0280007608.01.T01:cds;Parent=MsG0280007608.01.T01
Chr2 CDS 17993411 17993599 17993411 ID=MsG0280007608.01.T01:cds;Parent=MsG0280007608.01.T01
Chr2 CDS 17993224 17993315 17993224 ID=MsG0280007608.01.T01:cds;Parent=MsG0280007608.01.T01
Chr2 CDS 17992399 17992458 17992399 ID=MsG0280007608.01.T01:cds;Parent=MsG0280007608.01.T01
Chr2 CDS 17990239 17990371 17990239 ID=MsG0280007608.01.T01:cds;Parent=MsG0280007608.01.T01
Chr2 CDS 17989971 17990132 17989971 ID=MsG0280007608.01.T01:cds;Parent=MsG0280007608.01.T01
Chr2 three_prime_UTR 17989660 17989970 17989660 ID=MsG0280007608.01.T01:three_prime_utr;Parent=MsG0280007608.01.T01
Chr2 three_prime_UTR 17989423 17989612 17989423 ID=MsG0280007608.01.T01:three_prime_utr;Parent=MsG0280007608.01.T01
Chr2 mRNA 17989425 17995504 17989425 ID=MsG0280007608.01.T02;Parent=MsG0280007608.01;Name=MsG0280007608.01.T02;_AED=0.37;_eAED=0.37;_QI=0|0.66|0.57|1|1|1|7|546|413
Chr2 exon 17989425 17990132 17989425 ID=MsG0280007608.01.T02:exon:10892;Parent=MsG0280007608.01.T02
Chr2 CDS 17995240 17995504 17995240 ID=MsG0280007608.01.T02:cds;Parent=MsG0280007608.01.T02
Chr2 CDS 17994810 17995150 17994810 ID=MsG0280007608.01.T02:cds;Parent=MsG0280007608.01.T02
Chr2 CDS 17993411 17993599 17993411 ID=MsG0280007608.01.T02:cds;Parent=MsG0280007608.01.T02
Chr2 CDS 17993224 17993315 17993224 ID=MsG0280007608.01.T02:cds;Parent=MsG0280007608.01.T02
Chr2 CDS 17992399 17992458 17992399 ID=MsG0280007608.01.T02:cds;Parent=MsG0280007608.01.T02
Chr2 CDS 17990239 17990371 17990239 ID=MsG0280007608.01.T02:cds;Parent=MsG0280007608.01.T02
Chr2 CDS 17989971 17990132 17989971 ID=MsG0280007608.01.T02:cds;Parent=MsG0280007608.01.T02
Chr2 three_prime_UTR 17989425 17989970 17989425 ID=MsG0280007608.01.T02:three_prime_utr;Parent=MsG0280007608.01.T02
Gene Sequence

>MsG0280007608.01.T01

ATGGTTTGTATTCATGAAGGGGAGAAAATGAGTGATGCAGAAGATCAATCACATTCTTCACGAAACAAGTGGCAACCAGAAAGCTATAAAAATCATCATGCTAGAGATCCTAATCCGGGAAGTGACCTTTGGACAGATGGACTTATCTGTGCTTTTGAATTTGTTCGAGGAAAAAAAAGACCAGTTAAGTCGAGATCCTCGTCAAATATCGCAAACAGACCACATTCTGACGGCCGATATTCAAAGATGCATGTCCCTTCAAATGGTTGGCCATCTAATTCCCCAGAAGAGCATGTGGGTGATCATTGGGTACCAATTGGATGGTCCAGAATCTCAGAACTTGTTCAAGTAGTTCAGGTTGATGCCGTCTGGTCTTCTCATCAATTTGAATTTGACGATTCTGAAGATGATTTTACTGTAGCAGATCTAGCAGCTCCCTATTGGGAGCGTCCAGCTGGGCCTAGATGGTGGTGCCACGTTTCTGCAGGTCACCCTGTTGTTGAGGCTTGGCTCAGCAATGCTCAATGGCTACATCCTGCTGTTGGTTTAGCTTTGAGAGACGAAAGCAAACTTATAAGTGAGCGGATGAAGCACCTTCTCTATGAGGTTCCGGTGAGAGTTGCAGGAGGGCTGCTATTTGAGCTCTTGGGACAATCAGTGGGCGATCCTCATGTTGATGAAGATGATATTCCGATTGTACTTAGGTCTTGGCAAGCACAAAACTTTCTAGTAACTGTAATGCATATAAAAGGTCCTGTGTCAAAGATAAATGTTCTCGGTATAACAGAAGTTCAGGAGCTTCTTTCTACTGGAGGATATAATGTGCCAAGAACAACACATGAAGTTATAGCACAGCTTGCTTCCCGTCTCTCACGGTGGGACGATAGGTTATTTCGGAAATCTATATTTGGGACAGCAGATGAGATTGAATTGAAGTTTATGAACAGGGAATGGAGCAAGAAACTTGTTGGAAGGAATAAAAAAAACACAAGGGAAATGATTGAAGAGCAAGAAGCAGTTCGTGGCCGTCTGTTTACCATTCAAGATGTTATGCAGAGCACTGTCCGAGCTTGGTTGCAGGACAGAAGCCTTAGGGTGACACATAACTTAGCTGTATTTGGTGGTGTCGGCGTTGTCCTCACCATCATTACTGGTTTGTTTGGTATCAACGTTGATGGAATACCTGGGGCAGCAAACACCCATATGCATTTGGTGTCTTCACAGCCATCCTCATCTTTTTAG

>MsG0280007608.01.T02

ATGGTTTGTATTCATGAAGGGGAGAAAATGAGTGATGCAGAAGATCAATCACATTCTTCACGAAACAAGTGGCAACCAGAAAGCTATAAAAATCATCATGCTAGAGATCCTAATCCGGGAAGTGACCTTTGGACAGATGGACTTATCTGTGCTTTTGAATTTGTTCGAGGAAAAAAAAGACCAGTTAAGTCGAGATCCTCGTCAAATATCGCAAACAGACCACATTCTGACGGCCGATATTCAAAGATGCATGTCCCTTCAAATGGTTGGCCATCTAATTCCCCAGAAGAGCATGTGGGTGATCATTGGGTACCAATTGGATGGTCCAGAATCTCAGAACTTGTTCAAGTAGTTCAGGTTGATGCCGTCTGGTCTTCTCATCAATTTGAATTTGACGATTCTGAAGATGATTTTACTGTAGCAGATCTAGCAGCTCCCTATTGGGAGCGTCCAGCTGGGCCTAGATGGTGGTGCCACGTTTCTGCAGGTCACCCTGTTGTTGAGGCTTGGCTCAGCAATGCTCAATGGCTACATCCTGCTGTTGGTTTAGCTTTGAGAGACGAAAGCAAACTTATAAGTGAGCGGATGAAGCACCTTCTCTATGAGGTTCCGGTGAGAGTTGCAGGAGGGCTGCTATTTGAGCTCTTGGGACAATCAGTGGGCGATCCTCATGTTGATGAAGATGATATTCCGATTGTACTTAGGTCTTGGCAAGCACAAAACTTTCTAGTAACTGTAATGCATATAAAAGGTCCTGTGTCAAAGATAAATGTTCTCGGTATAACAGAAGTTCAGGAGCTTCTTTCTACTGGAGGATATAATGTGCCAAGAACAACACATGAAGTTATAGCACAGCTTGCTTCCCGTCTCTCACGGTGGGACGATAGGTTATTTCGGAAATCTATATTTGGGACAGCAGATGAGATTGAATTGAAGTTTATGAACAGGGAATGGAGCAAGAAACTTGTTGGAAGGAATAAAAAAAACACAAGGGAAATGATTGAAGAGCAAGAAGCAGTTCGTGGCCGTCTGTTTACCATTCAAGATGTTATGCAGAGCACTGTCCGAGCTTGGTTGCAGGACAGAAGCCTTAGGGTGACACATAACTTAGCTGTATTTGGTGGTGTCGGCGTTGTCCTCACCATCATTACTGGTTTGTTTGGTATCAACGTTGATGGAATACCTGGGGCAGCAAACACCCATATGCATTTGGTGTCTTCACAGCCATCCTCATCTTTTTAG
Protein sequence

>MsG0280007608.01.T01

MVCIHEGEKMSDAEDQSHSSRNKWQPESYKNHHARDPNPGSDLWTDGLICAFEFVRGKKRPVKSRSSSNIANRPHSDGRYSKMHVPSNGWPSNSPEEHVGDHWVPIGWSRISELVQVVQVDAVWSSHQFEFDDSEDDFTVADLAAPYWERPAGPRWWCHVSAGHPVVEAWLSNAQWLHPAVGLALRDESKLISERMKHLLYEVPVRVAGGLLFELLGQSVGDPHVDEDDIPIVLRSWQAQNFLVTVMHIKGPVSKINVLGITEVQELLSTGGYNVPRTTHEVIAQLASRLSRWDDRLFRKSIFGTADEIELKFMNREWSKKLVGRNKKNTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGVGVVLTIITGLFGINVDGIPGAANTHMHLVSSQPSSSF*

>MsG0280007608.01.T02

MVCIHEGEKMSDAEDQSHSSRNKWQPESYKNHHARDPNPGSDLWTDGLICAFEFVRGKKRPVKSRSSSNIANRPHSDGRYSKMHVPSNGWPSNSPEEHVGDHWVPIGWSRISELVQVVQVDAVWSSHQFEFDDSEDDFTVADLAAPYWERPAGPRWWCHVSAGHPVVEAWLSNAQWLHPAVGLALRDESKLISERMKHLLYEVPVRVAGGLLFELLGQSVGDPHVDEDDIPIVLRSWQAQNFLVTVMHIKGPVSKINVLGITEVQELLSTGGYNVPRTTHEVIAQLASRLSRWDDRLFRKSIFGTADEIELKFMNREWSKKLVGRNKKNTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGVGVVLTIITGLFGINVDGIPGAANTHMHLVSSQPSSSF*