AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011516.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011516.01.T02 MTR_3g005970 94.000 50 3 0 148 197 35 84 1.83e-27 107
MsG0380011516.01.T02 MTR_1g082540 69.565 69 15 2 38 102 1 67 1.82e-24 92.0
MsG0380011516.01.T02 MTR_7g051110 47.561 82 35 2 24 101 88 165 2.82e-15 70.9
MsG0380011516.01.T01 MTR_3g005970 98.168 382 7 0 1 382 1 382 0.0 776
MsG0380011516.01.T01 MTR_4g005880 31.890 254 153 5 117 367 151 387 2.39e-30 122
MsG0380011516.01.T01 MTR_1g107480 30.830 253 157 3 117 367 118 354 4.13e-30 122
MsG0380011516.01.T01 MTR_8g033410 26.286 350 210 11 45 375 1 321 1.42e-27 111
MsG0380011516.01.T01 MTR_8g033390 27.536 276 173 6 106 375 64 318 2.05e-26 108
MsG0380011516.01.T01 MTR_8g033400 28.244 262 160 6 107 362 76 315 1.07e-25 106
MsG0380011516.01.T01 MTR_4g012960 26.493 268 177 3 108 375 58 305 6.13e-25 103
MsG0380011516.01.T01 MTR_4g013090 28.517 263 155 6 108 362 58 295 5.42e-24 101
MsG0380011516.01.T01 MTR_4g013100 27.519 258 164 5 108 362 59 296 6.99e-24 100
MsG0380011516.01.T01 MTR_6g007170 30.827 266 152 7 112 366 116 360 6.57e-22 96.7
MsG0380011516.01.T01 MTR_2g101840 26.217 267 174 4 99 362 50 296 2.46e-20 90.9
MsG0380011516.01.T01 MTR_7g075830 24.555 281 173 7 118 380 57 316 3.30e-17 82.0
MsG0380011516.01.T01 MTR_6g007175 28.475 295 157 10 86 366 56 310 5.77e-17 81.6
MsG0380011516.01.T01 MTR_4g013135 28.044 271 172 5 108 375 58 308 3.56e-15 75.9
MsG0380011516.01.T01 MTR_1g112510 26.217 267 182 6 119 375 88 349 2.09e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011516.01.T01 AT1G72190 62.895 380 131 3 5 382 2 373 5.09e-174 489
MsG0380011516.01.T01 AT1G17745 32.056 287 173 8 85 366 111 380 7.31e-32 127
MsG0380011516.01.T01 AT4G34200 31.496 254 154 5 117 367 124 360 3.34e-30 122
MsG0380011516.01.T01 AT1G17745 29.618 314 172 9 85 366 111 407 4.72e-29 119
MsG0380011516.01.T01 AT3G19480 31.102 254 155 5 117 367 109 345 4.17e-27 113
MsG0380011516.01.T01 AT2G45630 28.788 264 163 5 117 375 90 333 8.01e-27 109
MsG0380011516.01.T01 AT1G12550 27.376 263 163 7 105 361 62 302 9.56e-23 98.2
MsG0380011516.01.T01 AT5G14780 32.489 237 130 6 125 351 101 317 1.47e-22 98.2
MsG0380011516.01.T01 AT5G14780 32.489 237 130 6 125 351 113 329 1.73e-22 98.2
MsG0380011516.01.T01 AT5G14780 33.193 238 127 7 125 351 127 343 2.04e-22 98.2
MsG0380011516.01.T01 AT1G79870 28.364 275 173 8 108 378 58 312 1.92e-20 91.3
MsG0380011516.01.T01 AT1G79870 25.735 272 165 7 108 378 58 293 4.93e-16 78.2
MsG0380011516.01.T01 AT1G68010 26.966 267 180 6 119 375 88 349 7.69e-15 75.9
MsG0380011516.01.T01 AT1G68010 27.027 259 174 6 119 367 88 341 2.40e-14 73.9
MsG0380011516.01.T01 AT1G68010 26.866 268 180 7 119 375 88 350 2.65e-13 71.2

Find 117 sgRNAs with CRISPR-Local

Find 527 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATCGGTGATACTTTATT+TGG 0.071786 3:+834010 MsG0380011516.01.T01:CDS
GATAATGTAGATATTCATTT+TGG 0.088675 3:+834993 MsG0380011516.01.T01:intron
CAAACATCATCCGTCTTATT+TGG 0.159203 3:-837058 None:intergenic
CTTCATTTCTTCCATGAAAA+AGG 0.182361 3:+835550 MsG0380011516.01.T01:CDS
CCAAGCTATAATTTCAATAT+TGG 0.220066 3:+830925 MsG0380011516.01.T01:intron
TAGCTCGAGTGGCCTGTTCT+TGG 0.241601 3:+829611 MsG0380011516.01.T02:CDS
AAGTAAGATAGTAATTATTT+TGG 0.251060 3:+830131 MsG0380011516.01.T01:five_prime_UTR
CCACAACAACTCAGGTTTCC+AGG 0.254175 3:+830264 MsG0380011516.01.T01:CDS
TTTATTTCAGGGTGCCCTTC+TGG 0.268864 3:+836435 MsG0380011516.01.T01:intron
ACTCCCATGGGCAATTTATT+CGG 0.284134 3:+829394 MsG0380011516.01.T02:CDS
TATCAAGGTACATCTCTATT+AGG 0.314578 3:+831090 MsG0380011516.01.T01:intron
ACTTCAAGGTGAAGTTTGTT+AGG 0.327663 3:+829560 MsG0380011516.01.T02:CDS
AGCTCGAGTGGCCTGTTCTT+GGG 0.329279 3:+829612 MsG0380011516.01.T02:CDS
ATCTTTACATTCCAACTTCA+AGG 0.331453 3:+829546 MsG0380011516.01.T02:CDS
CTCCCATGGGCAATTTATTC+GGG 0.363212 3:+829395 MsG0380011516.01.T02:CDS
TCCAAGCTTCCTTTGCTGTA+TGG 0.363828 3:-833984 None:intergenic
AAGACCCAACATTAGATATA+TGG 0.364315 3:-833176 None:intergenic
CTATCGGTGATACTTTATTT+GGG 0.376577 3:+834011 MsG0380011516.01.T01:CDS
TTATTCGGGCTCAAACAAAA+TGG 0.378299 3:+829409 MsG0380011516.01.T02:CDS
CTCCTAAGTGTCCGGATTCA+AGG 0.399021 3:-836507 None:intergenic
ATCATGACTCCTCATATTGC+AGG 0.400259 3:+836601 MsG0380011516.01.T01:CDS
TACTACACAAACATGATAGT+TGG 0.402501 3:-832889 None:intergenic
ATTGAGTTAGTCAATTGAAT+TGG 0.403788 3:+836888 MsG0380011516.01.T01:exon
GCACGACGATTGAAACCATT+TGG 0.411552 3:+835042 MsG0380011516.01.T01:CDS
ATAAACTTGGCTAAATAAAC+AGG 0.416326 3:-837091 None:intergenic
AGGATCCCCAGTGGTGCTAC+TGG 0.419307 3:+833127 MsG0380011516.01.T01:CDS
TAGAGATGTACCTTGATAGA+TGG 0.426362 3:-831085 None:intergenic
ATCTGATCATCGGGATCAAA+TGG 0.430970 3:-836559 None:intergenic
AATTTCAATATCTGATCATC+GGG 0.437385 3:-836568 None:intergenic
TTCAGTTGCATGTGCTGAAA+TGG 0.438602 3:+833153 MsG0380011516.01.T01:CDS
CTTATAATGCAGTATGGTGT+TGG 0.439984 3:+832963 MsG0380011516.01.T01:CDS
AACCTTAGCCATGGATCTAT+AGG 0.450234 3:-836638 None:intergenic
AACAAACTTCACCTTGAAGT+TGG 0.452725 3:-829557 None:intergenic
TATTGCTACAAAGCGGAGTT+GGG 0.456275 3:+835074 MsG0380011516.01.T01:CDS
ATGAAGCTTATAATGCAGTA+TGG 0.460758 3:+832957 MsG0380011516.01.T01:CDS
CCTTGGGAATTTCTTCCAAC+GGG 0.461257 3:-832860 None:intergenic
TCCATACAGCAAAGGAAGCT+TGG 0.462894 3:+833983 MsG0380011516.01.T01:CDS
ATGATAGTTGGCAATAGCCT+TGG 0.466311 3:-832877 None:intergenic
TCCTAGCCCTCCTAAGTGTC+CGG 0.468903 3:-836515 None:intergenic
AAAATCTGATGGAGAGAAAT+GGG 0.472016 3:+830960 MsG0380011516.01.T01:CDS
GGCAAATATGACAGTGTTGG+AGG 0.472712 3:+829438 MsG0380011516.01.T02:CDS
CATGCTGGAAATCCTTTGAC+AGG 0.473055 3:+836864 MsG0380011516.01.T01:CDS
TTATTGCTACAAAGCGGAGT+TGG 0.473922 3:+835073 MsG0380011516.01.T01:CDS
GGCTCAAACAAAATGGTAGC+GGG 0.476586 3:+829416 MsG0380011516.01.T02:CDS
AAATTTCAATATCTGATCAT+CGG 0.488385 3:-836569 None:intergenic
AAAGTGAATGACATCAAGTA+AGG 0.488870 3:-829473 None:intergenic
AATGGCCATATATCTAATGT+TGG 0.489549 3:+833171 MsG0380011516.01.T01:CDS
TGAATTTCCAGTAGCACCAC+TGG 0.503475 3:-833134 None:intergenic
TGCTCATACTTTAGCTCGAG+TGG 0.505466 3:+829600 MsG0380011516.01.T02:CDS
ATGGCCATATATCTAATGTT+GGG 0.506294 3:+833172 MsG0380011516.01.T01:CDS
TTTCAATATTGGTGCTGTGT+AGG 0.511186 3:+830936 MsG0380011516.01.T01:intron
ACGGTGACTAGCCCAAGAAC+AGG 0.513446 3:-829623 None:intergenic
TGGAGAAGAGAAGTGAGTGT+TGG 0.518667 3:-830244 None:intergenic
TGATAGTTGGCAATAGCCTT+GGG 0.519273 3:-832876 None:intergenic
GGAGAAGAGAAGTGAGTGTT+GGG 0.520216 3:-830243 None:intergenic
CTTAAACTTAAACAGTGAAA+CGG 0.520932 3:+835310 MsG0380011516.01.T01:CDS
GCCTTGGGAATTTCTTCCAA+CGG 0.523993 3:-832861 None:intergenic
ACTATAGGTTGTTGGTGATG+TGG 0.525653 3:+836830 MsG0380011516.01.T01:intron
GCAAATATGACAGTGTTGGA+GGG 0.528701 3:+829439 MsG0380011516.01.T02:CDS
GTGGTTCTTCAACTTCATGC+TGG 0.529637 3:+836849 MsG0380011516.01.T01:CDS
ATCGATGCTGCAACAAAGCA+TGG 0.530276 3:+833091 MsG0380011516.01.T01:CDS
AACCTTGAATCCGGACACTT+AGG 0.536199 3:+836505 MsG0380011516.01.T01:CDS
AACATGCAAAAGATGTAAGA+TGG 0.537285 3:-829362 None:intergenic
GCAGAATCATCCATCTATCA+AGG 0.542084 3:+831075 MsG0380011516.01.T01:CDS
CAAATATGACAGTGTTGGAG+GGG 0.544043 3:+829440 MsG0380011516.01.T02:CDS
GGCTAGGAACCGATGTTGCA+TGG 0.544266 3:+836530 MsG0380011516.01.T01:CDS
AATACAGAACAATCATTGCC+TGG 0.545812 3:-837006 None:intergenic
ACTAACTCAATTCCTGTCAA+AGG 0.547459 3:-836876 None:intergenic
TCTCTTCTCCACAACAACTC+AGG 0.549094 3:+830256 MsG0380011516.01.T01:CDS
CGGGGCAAATATGACAGTGT+TGG 0.557859 3:+829435 MsG0380011516.01.T02:CDS
TTATAATGCAGTATGGTGTT+GGG 0.558492 3:+832964 MsG0380011516.01.T01:CDS
ACAGCCTCATAGTCTAAAAG+AGG 0.560341 3:-836475 None:intergenic
ATGTAAGATGGTTACCAGCA+TGG 0.562323 3:-829350 None:intergenic
AAATATGACAGTGTTGGAGG+GGG 0.567670 3:+829441 MsG0380011516.01.T02:CDS
CTCCTATAGATCCATGGCTA+AGG 0.568330 3:+836636 MsG0380011516.01.T01:CDS
GTGGATGTCGCGCTCCATGC+TGG 0.568401 3:+829336 MsG0380011516.01.T02:CDS
CTTGAATCCGGACACTTAGG+AGG 0.570448 3:+836508 MsG0380011516.01.T01:CDS
CCAAATAAAGTATCACCGAT+AGG 0.575385 3:-834010 None:intergenic
AATGCAGTATGGTGTTGGGC+TGG 0.576747 3:+832968 MsG0380011516.01.T01:CDS
CAGTATGGTGTTGGGCTGGA+AGG 0.577929 3:+832972 MsG0380011516.01.T01:CDS
TAAAGTATGAGCAACAATGT+TGG 0.578653 3:-829590 None:intergenic
GAATTTCCAGTAGCACCACT+GGG 0.581979 3:-833133 None:intergenic
TCCGGACACTTAGGAGGGCT+AGG 0.583295 3:+836514 MsG0380011516.01.T01:CDS
CCTGGAAACCTGAGTTGTTG+TGG 0.584521 3:-830264 None:intergenic
GTAGGTTGATGTTCTCCCGT+TGG 0.587056 3:+832845 MsG0380011516.01.T01:intron
GAGCCCGAATAAATTGCCCA+TGG 0.592415 3:-829398 None:intergenic
ACTTTGCTGATGTGAACAGA+TGG 0.593979 3:+829491 MsG0380011516.01.T02:CDS
CTTCTGGTTAATGTTGCTAG+AGG 0.594373 3:+836451 MsG0380011516.01.T01:CDS
CTCTAGCAACATTAACCAGA+AGG 0.595259 3:-836450 None:intergenic
TGCAGATTTCCATACAGCAA+AGG 0.595617 3:+833975 MsG0380011516.01.T01:CDS
GAAGATACTATACTTGCTTG+CGG 0.595687 3:-833201 None:intergenic
AGCCACACAAACCTTAGCCA+TGG 0.596880 3:-836647 None:intergenic
TGATGATCTTGTTGATGTGA+AGG 0.599066 3:+835232 MsG0380011516.01.T01:CDS
AGCCCGAATAAATTGCCCAT+GGG 0.599705 3:-829397 None:intergenic
GGGCTCAAACAAAATGGTAG+CGG 0.600814 3:+829415 MsG0380011516.01.T02:CDS
AGGAAGCTTGGAGAGCCTAT+CGG 0.606938 3:+833995 MsG0380011516.01.T01:CDS
AGCATGGAATCAAAGTTGCT+AGG 0.608422 3:+833107 MsG0380011516.01.T01:CDS
AGAACACTCCTATAGATCCA+TGG 0.614020 3:+836630 MsG0380011516.01.T01:CDS
CCCGTTGGAAGAAATTCCCA+AGG 0.614180 3:+832860 MsG0380011516.01.T01:CDS
GTTGTATATAGATGAGAACA+TGG 0.621208 3:-831043 None:intergenic
TCTGTAACGCCTGCAATATG+AGG 0.621540 3:-836610 None:intergenic
TGGCTCTGTCCATGCAACAT+CGG 0.626980 3:-836539 None:intergenic
GATGATCTTGTTGATGTGAA+GGG 0.630775 3:+835233 MsG0380011516.01.T01:CDS
TTCGCGAAAACCAAATAAGA+CGG 0.633250 3:+837048 MsG0380011516.01.T01:three_prime_UTR
AAAGTGTGTTGTACTTGTTG+AGG 0.638382 3:+830192 MsG0380011516.01.T01:CDS
AGATGAGAACATGGGAACTG+AGG 0.641093 3:-831034 None:intergenic
CTTTGCTGATGTGAACAGAT+GGG 0.646990 3:+829492 MsG0380011516.01.T02:CDS
TTATTTATAAAATTGAGACC+AGG 0.655792 3:+836988 MsG0380011516.01.T01:three_prime_UTR
TTGAATCCGGACACTTAGGA+GGG 0.659810 3:+836509 MsG0380011516.01.T01:CDS
TCTAGCAACATTAACCAGAA+GGG 0.669159 3:-836449 None:intergenic
GCTCAAACAAAATGGTAGCG+GGG 0.680946 3:+829417 MsG0380011516.01.T02:CDS
TGTTGTGTTAGAGACTCCCA+TGG 0.684242 3:+829381 MsG0380011516.01.T02:CDS
TAAAAGTTATTGCTACAAAG+CGG 0.687855 3:+835067 MsG0380011516.01.T01:CDS
TTGTATATAGATGAGAACAT+GGG 0.718125 3:-831042 None:intergenic
GTTGTGTTAGAGACTCCCAT+GGG 0.722637 3:+829382 MsG0380011516.01.T02:CDS
AAAGTTGCTAGGATCCCCAG+TGG 0.758524 3:+833118 MsG0380011516.01.T01:CDS
AATTTCCAGTAGCACCACTG+GGG 0.785993 3:-833132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAATATATATTTTA+GGG + Chr3:829738-829757 MsG0380011516.01.T02:intron 0.0%
!! AAATGAAATAAGTAAATTTA+AGG - Chr3:835598-835617 None:intergenic 10.0%
!! AATGAAATAAGTAAATTTAA+GGG - Chr3:835597-835616 None:intergenic 10.0%
!! ATAATCATAGAATAAAATAT+AGG - Chr3:830043-830062 None:intergenic 10.0%
!! ATTTCAGTAAATATAAATAT+GGG - Chr3:834696-834715 None:intergenic 10.0%
!! TATTTCAGTAAATATAAATA+TGG - Chr3:834697-834716 None:intergenic 10.0%
!!! AAATATATATAGTTTACTTT+TGG + Chr3:834300-834319 MsG0380011516.01.T01:intron 10.0%
!!! ATTTACTTATTTCATTTTTT+AGG + Chr3:835601-835620 MsG0380011516.01.T01:intron 10.0%
!!! GAAATAAAGTTAAATTTTTT+TGG + Chr3:830599-830618 MsG0380011516.01.T01:intron 10.0%
!!! TTTACTTATTTCATTTTTTA+GGG + Chr3:835602-835621 MsG0380011516.01.T01:intron 10.0%
!!! TTTTCATTCAAATATAAAAA+GGG - Chr3:831692-831711 None:intergenic 10.0%
!! AAAACGAATAAATAAATGAT+TGG - Chr3:835347-835366 None:intergenic 15.0%
!! AAGGATAAGAATTAAAAATA+CGG - Chr3:829645-829664 None:intergenic 15.0%
!! AATAGAAATAGAGAAAATAA+TGG + Chr3:835748-835767 MsG0380011516.01.T01:intron 15.0%
!! AATATTTGTCAATAAAAATG+TGG - Chr3:833291-833310 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG - Chr3:829782-829801 None:intergenic 15.0%
!! ATAGATACCAATTTAAATTA+CGG - Chr3:832661-832680 None:intergenic 15.0%
!! ATATTTCGTTATATCTAAAT+TGG + Chr3:831898-831917 MsG0380011516.01.T01:intron 15.0%
!! ATCAAATTTCTGTTATATTT+AGG - Chr3:831416-831435 None:intergenic 15.0%
!! ATGAAATAAGTAAATTTAAG+GGG - Chr3:835596-835615 None:intergenic 15.0%
!! ATTCTAAATTCAATGTAATT+AGG + Chr3:830869-830888 MsG0380011516.01.T01:intron 15.0%
!! CAAAATTCTGAATATTTATA+GGG - Chr3:829781-829800 None:intergenic 15.0%
!! GAAAAATAATAAATAATCAG+AGG - Chr3:833056-833075 None:intergenic 15.0%
!! GAAAATATCAAAATGAAAAA+AGG - Chr3:831145-831164 None:intergenic 15.0%
!! GTAGAAATATAGATTTATTT+CGG - Chr3:834188-834207 None:intergenic 15.0%
!! TATATTGTCAAAATATGAAT+TGG - Chr3:831558-831577 None:intergenic 15.0%
!! TTATATTTACTGAAATAGAT+CGG + Chr3:834700-834719 MsG0380011516.01.T01:intron 15.0%
!!! AAAATGTGATTTTATTTTGT+AGG + Chr3:829967-829986 MsG0380011516.01.T02:intron 15.0%
!!! AAATGTGATTTTATTTTGTA+GGG + Chr3:829968-829987 MsG0380011516.01.T02:intron 15.0%
!!! AAGTAAGATAGTAATTATTT+TGG + Chr3:830131-830150 MsG0380011516.01.T01:five_prime_UTR 15.0%
!!! AATGTTAATGGAAATTTTAT+AGG - Chr3:829873-829892 None:intergenic 15.0%
!!! AATTTGAAATGAAGAAAAAT+AGG - Chr3:831856-831875 None:intergenic 15.0%
!!! ATAATGTAGATATTCATTTT+GGG + Chr3:834994-835013 MsG0380011516.01.T01:intron 15.0%
!!! ATGTTAATGGAAATTTTATA+GGG - Chr3:829872-829891 None:intergenic 15.0%
!!! CTTTTCATTCAAATATAAAA+AGG - Chr3:831693-831712 None:intergenic 15.0%
!!! GATTTTATTTTTTTATCAGT+AGG + Chr3:836206-836225 MsG0380011516.01.T01:intron 15.0%
!!! TATTTATTATTTTTCCTCTT+AGG + Chr3:833061-833080 MsG0380011516.01.T01:intron 15.0%
!! AAATTAAAATTAGTAGCCTA+AGG + Chr3:835997-836016 MsG0380011516.01.T01:intron 20.0%
!! AAATTTCAATATCTGATCAT+CGG - Chr3:836572-836591 None:intergenic 20.0%
!! AATAATGTATAACTGGAATT+TGG + Chr3:836163-836182 MsG0380011516.01.T01:intron 20.0%
!! ACAAAATTGTGAATATTCAT+AGG + Chr3:829998-830017 MsG0380011516.01.T02:intron 20.0%
!! ACATAGAAATAATGTATAAC+TGG + Chr3:836156-836175 MsG0380011516.01.T01:intron 20.0%
!! AGTTATAACAAAAGGAATTA+TGG + Chr3:831358-831377 MsG0380011516.01.T01:intron 20.0%
!! ATAATCAAAGAATAGTTCAT+AGG - Chr3:835908-835927 None:intergenic 20.0%
!! ATTTAAATTGGTATCTATCA+TGG + Chr3:832663-832682 MsG0380011516.01.T01:intron 20.0%
!! CAAAATTGTGAATATTCATA+GGG + Chr3:829999-830018 MsG0380011516.01.T02:intron 20.0%
!! GTTATAACAAAAGGAATTAT+GGG + Chr3:831359-831378 MsG0380011516.01.T01:intron 20.0%
!! TAATCAAAGAATAGTTCATA+GGG - Chr3:835907-835926 None:intergenic 20.0%
!! TAGATTGAATTAAGTTTCTT+CGG + Chr3:831758-831777 MsG0380011516.01.T01:intron 20.0%
!! TTATCTGACCTAAAATTAAT+TGG - Chr3:832805-832824 None:intergenic 20.0%
!! TTATTTATAAAATTGAGACC+AGG + Chr3:836988-837007 MsG0380011516.01.T01:three_prime_UTR 20.0%
!! TTCAGAGAAACAATTAAAAT+TGG + Chr3:832409-832428 MsG0380011516.01.T01:intron 20.0%
!! TTTAAATTGGTATCTATCAT+GGG + Chr3:832664-832683 MsG0380011516.01.T01:intron 20.0%
!!! AAAATTTCCATCAACATTTT+TGG + Chr3:829907-829926 MsG0380011516.01.T02:intron 20.0%
!!! AACTACTAGAAACTTTTTAA+AGG + Chr3:833450-833469 MsG0380011516.01.T01:intron 20.0%
!!! ACTACTAGAAACTTTTTAAA+GGG + Chr3:833451-833470 MsG0380011516.01.T01:intron 20.0%
!!! ATAAACTATCAAAAAAGTAC+AGG - Chr3:836934-836953 None:intergenic 20.0%
!!! ATTTTAATTTCGTAGAGAAT+AGG - Chr3:835987-836006 None:intergenic 20.0%
!!! CATTTCTTGTTGTTTTATAT+AGG + Chr3:836314-836333 MsG0380011516.01.T01:intron 20.0%
!!! CATTTTTCTTAAGCATTTTA+GGG - Chr3:829934-829953 None:intergenic 20.0%
!!! CTTCTTATTTCATAATTCTA+CGG - Chr3:831509-831528 None:intergenic 20.0%
!!! GATAATGTAGATATTCATTT+TGG + Chr3:834993-835012 MsG0380011516.01.T01:intron 20.0%
!!! GTTTCATTCCAATTAATTTT+AGG + Chr3:832794-832813 MsG0380011516.01.T01:intron 20.0%
!!! TAATGTAGATATTCATTTTG+GGG + Chr3:834995-835014 MsG0380011516.01.T01:intron 20.0%
!!! TACAAGATATTTTGAGATTA+AGG + Chr3:830483-830502 MsG0380011516.01.T01:intron 20.0%
!!! TAGTTTATGATCATTTTCAA+TGG + Chr3:836946-836965 MsG0380011516.01.T01:three_prime_UTR 20.0%
!!! TCATTTTTCTTAAGCATTTT+AGG - Chr3:829935-829954 None:intergenic 20.0%
!!! TCTATATTTCTACCTTAAAA+AGG + Chr3:834195-834214 MsG0380011516.01.T01:intron 20.0%
!!! TTTTCATTACAATTTGCTTT+TGG + Chr3:835425-835444 MsG0380011516.01.T01:intron 20.0%
! AAAAAATCGAAAAGCCTAAT+TGG - Chr3:830373-830392 None:intergenic 25.0%
! AATCAATGTTCAATACAAGA+AGG - Chr3:829664-829683 None:intergenic 25.0%
! AATTTCAATATCTGATCATC+GGG - Chr3:836571-836590 None:intergenic 25.0%
! ACTTTACTATAAGTCCAAAT+AGG - Chr3:831473-831492 None:intergenic 25.0%
! ATAAACTTGGCTAAATAAAC+AGG - Chr3:837094-837113 None:intergenic 25.0%
! ATCTCTAATAACAAGCAATT+AGG + Chr3:834570-834589 MsG0380011516.01.T01:intron 25.0%
! ATCTTTAACGATTGTTTCAA+CGG - Chr3:834870-834889 None:intergenic 25.0%
! ATTGAGTTAGTCAATTGAAT+TGG + Chr3:836888-836907 MsG0380011516.01.T01:exon 25.0%
! ATTTGCAAAAACTAAAACAG+TGG + Chr3:834951-834970 MsG0380011516.01.T01:intron 25.0%
! CCAAGCTATAATTTCAATAT+TGG + Chr3:830925-830944 MsG0380011516.01.T01:intron 25.0%
! CCAATATTGAAATTATAGCT+TGG - Chr3:830928-830947 None:intergenic 25.0%
! CCAATTTAAATTACGGAAAT+AGG - Chr3:832654-832673 None:intergenic 25.0%
! CCTATTTCCGTAATTTAAAT+TGG + Chr3:832651-832670 MsG0380011516.01.T01:intron 25.0%
! CGTAGAATTATGAAATAAGA+AGG + Chr3:831507-831526 MsG0380011516.01.T01:intron 25.0%
! CTTAAACTTAAACAGTGAAA+CGG + Chr3:835310-835329 MsG0380011516.01.T01:CDS 25.0%
! GAAATAACCTAAAAACTAAG+AGG - Chr3:831390-831409 None:intergenic 25.0%
! GCAATCTCATTTAGAAATAA+TGG - Chr3:833247-833266 None:intergenic 25.0%
! GTTATTGTTTAATATGCCAT+GGG + Chr3:834088-834107 MsG0380011516.01.T01:intron 25.0%
! TAAAAGTTATTGCTACAAAG+CGG + Chr3:835067-835086 MsG0380011516.01.T01:CDS 25.0%
! TAAATTTAAGGGGTTAATCT+TGG - Chr3:835586-835605 None:intergenic 25.0%
! TAATGTACAATTAAACTGCT+TGG + Chr3:832161-832180 MsG0380011516.01.T01:intron 25.0%
! TCATTAAGTAAACATAACCA+CGG - Chr3:835854-835873 None:intergenic 25.0%
! TCGTGAAAATTGATTGAATT+AGG + Chr3:834334-834353 MsG0380011516.01.T01:intron 25.0%
! TCTCTAATAACAAGCAATTA+GGG + Chr3:834571-834590 MsG0380011516.01.T01:intron 25.0%
! TCTGTAAGAAACTATGTTAA+GGG + Chr3:831984-832003 MsG0380011516.01.T01:intron 25.0%
! TGACAAATATTTGAAAGCAA+GGG + Chr3:833300-833319 MsG0380011516.01.T01:intron 25.0%
! TGATTAATGAGCTTCAATTT+AGG + Chr3:831230-831249 MsG0380011516.01.T01:intron 25.0%
! TGTTATTGTTTAATATGCCA+TGG + Chr3:834087-834106 MsG0380011516.01.T01:intron 25.0%
! TTAAATTGGTATCTATCATG+GGG + Chr3:832665-832684 MsG0380011516.01.T01:intron 25.0%
! TTCTGTAAGAAACTATGTTA+AGG + Chr3:831983-832002 MsG0380011516.01.T01:intron 25.0%
! TTGACAAATATTTGAAAGCA+AGG + Chr3:833299-833318 MsG0380011516.01.T01:intron 25.0%
! TTGTATATAGATGAGAACAT+GGG - Chr3:831045-831064 None:intergenic 25.0%
! TTTACAGATCCATATAATTC+TGG - Chr3:836692-836711 None:intergenic 25.0%
! TTTCAGTAGTAGTTATCTTT+AGG + Chr3:832550-832569 MsG0380011516.01.T01:intron 25.0%
!! AAATTGGTGTTCTATCATTT+GGG + Chr3:831914-831933 MsG0380011516.01.T01:intron 25.0%
!! AAATTTTCCATCAGCATTTT+TGG + Chr3:829845-829864 MsG0380011516.01.T02:intron 25.0%
!! ACAATTAAAATTGGTGATCT+TGG + Chr3:832418-832437 MsG0380011516.01.T01:intron 25.0%
!! ACATTGAATTTAGAATCTAG+TGG - Chr3:830865-830884 None:intergenic 25.0%
!! AGTTGCATACATTGATTAAA+TGG + Chr3:834146-834165 MsG0380011516.01.T01:intron 25.0%
!! ATAGACTTTTGATCAAGATA+AGG + Chr3:836113-836132 MsG0380011516.01.T01:intron 25.0%
!! ATGCTGATGGAAAATTTTAT+AGG - Chr3:829842-829861 None:intergenic 25.0%
!! ATTGAACATTGATTGATCAA+AGG + Chr3:829670-829689 MsG0380011516.01.T02:intron 25.0%
!! CAATTAAAATTGGTGATCTT+GGG + Chr3:832419-832438 MsG0380011516.01.T01:intron 25.0%
!! CATTGAATTTAGAATCTAGT+GGG - Chr3:830864-830883 None:intergenic 25.0%
!! TAAATTGGTGTTCTATCATT+TGG + Chr3:831913-831932 MsG0380011516.01.T01:intron 25.0%
!! TAGACTTTTGATCAAGATAA+GGG + Chr3:836114-836133 MsG0380011516.01.T01:intron 25.0%
!! TGCTGATGGAAAATTTTATA+GGG - Chr3:829841-829860 None:intergenic 25.0%
!! TGTTTTATATAGGCTAGATT+GGG + Chr3:836324-836343 MsG0380011516.01.T01:intron 25.0%
!! TTACGAATTCCTTTATTTCA+GGG + Chr3:836424-836443 MsG0380011516.01.T01:intron 25.0%
!! TTCAATCAATTTTCACGAAA+CGG - Chr3:834332-834351 None:intergenic 25.0%
!! TTTAGGGTTAATTAAGCAAA+TGG + Chr3:829754-829773 MsG0380011516.01.T02:intron 25.0%
!! TTTTCGTTGAAACAAAGATT+TGG - Chr3:830222-830241 None:intergenic 25.0%
!!! AAAGTGTGCTTTTATTTTGT+AGG - Chr3:829813-829832 None:intergenic 25.0%
!!! AAGTGTGCTTTTATTTTGTA+GGG - Chr3:829812-829831 None:intergenic 25.0%
!!! ATCCAGGCAATAATTTTTTT+AGG + Chr3:834237-834256 MsG0380011516.01.T01:intron 25.0%
!!! CTACTAGAAACTTTTTAAAG+GGG + Chr3:833452-833471 MsG0380011516.01.T01:intron 25.0%
!!! TAATTTTTTTAGGTGTCTGA+TGG + Chr3:834247-834266 MsG0380011516.01.T01:intron 25.0%
!!! TTCCTTTTGTTATAACTCTT+CGG - Chr3:831355-831374 None:intergenic 25.0%
!!! TTGTTTTATATAGGCTAGAT+TGG + Chr3:836323-836342 MsG0380011516.01.T01:intron 25.0%
AAAAATCTGATGGAGAGAAA+TGG + Chr3:830959-830978 MsG0380011516.01.T01:CDS 30.0%
AAAATCTGATGGAGAGAAAT+GGG + Chr3:830960-830979 MsG0380011516.01.T01:CDS 30.0%
AAAATTAAAGCAATGCTCAG+AGG - Chr3:834507-834526 None:intergenic 30.0%
AAAGTGAATGACATCAAGTA+AGG - Chr3:829476-829495 None:intergenic 30.0%
AACAAAAAAACATACGAACC+TGG - Chr3:830285-830304 None:intergenic 30.0%
AACATGCAAAAGATGTAAGA+TGG - Chr3:829365-829384 None:intergenic 30.0%
AACCGAAGAGTTATAACAAA+AGG + Chr3:831350-831369 MsG0380011516.01.T01:intron 30.0%
AAGACCCAACATTAGATATA+TGG - Chr3:833179-833198 None:intergenic 30.0%
AATAAGCTGTTTATCCAAAC+AGG - Chr3:830510-830529 None:intergenic 30.0%
AATGGCCATATATCTAATGT+TGG + Chr3:833171-833190 MsG0380011516.01.T01:CDS 30.0%
ACAAATATTTGAAAGCAAGG+GGG + Chr3:833302-833321 MsG0380011516.01.T01:intron 30.0%
ACAACCTATAGTAAAACAAC+AGG - Chr3:836822-836841 None:intergenic 30.0%
ACAGGGACTAAAAATGTTAA+TGG - Chr3:829885-829904 None:intergenic 30.0%
ATAAGCTGTTTATCCAAACA+GGG - Chr3:830509-830528 None:intergenic 30.0%
ATCTTTACATTCCAACTTCA+AGG + Chr3:829546-829565 MsG0380011516.01.T02:CDS 30.0%
ATGAAGCTTATAATGCAGTA+TGG + Chr3:832957-832976 MsG0380011516.01.T01:CDS 30.0%
ATGGCCATATATCTAATGTT+GGG + Chr3:833172-833191 MsG0380011516.01.T01:CDS 30.0%
ATTTCATAATTCTACGGTGT+GGG - Chr3:831503-831522 None:intergenic 30.0%
CAAATTGAATAGTACAGTCA+CGG - Chr3:831724-831743 None:intergenic 30.0%
CACCTAAAAAAATTATTGCC+TGG - Chr3:834242-834261 None:intergenic 30.0%
CCACTTATTCCAGAATTATA+TGG + Chr3:836680-836699 MsG0380011516.01.T01:intron 30.0%
CTTCATTTCTTCCATGAAAA+AGG + Chr3:835550-835569 MsG0380011516.01.T01:CDS 30.0%
GACAAATATTTGAAAGCAAG+GGG + Chr3:833301-833320 MsG0380011516.01.T01:intron 30.0%
GACATGTTAGATAATGTTAG+AGG - Chr3:833651-833670 None:intergenic 30.0%
GAGTCAAACAAAACATTTGA+AGG + Chr3:834651-834670 MsG0380011516.01.T01:intron 30.0%
GTATGAGTGCTTAAAACTAT+GGG - Chr3:836247-836266 None:intergenic 30.0%
GTTGTATATAGATGAGAACA+TGG - Chr3:831046-831065 None:intergenic 30.0%
TAAAGTATGAGCAACAATGT+TGG - Chr3:829593-829612 None:intergenic 30.0%
TAAGCTCATAATGTATGTAC+AGG + Chr3:835629-835648 MsG0380011516.01.T01:intron 30.0%
TAATGTATGTACAGGATGAT+AGG + Chr3:835637-835656 MsG0380011516.01.T01:intron 30.0%
TACTACACAAACATGATAGT+TGG - Chr3:832892-832911 None:intergenic 30.0%
TATCAAGGTACATCTCTATT+AGG + Chr3:831090-831109 MsG0380011516.01.T01:intron 30.0%
TATTTCATAATTCTACGGTG+TGG - Chr3:831504-831523 None:intergenic 30.0%
TCTTAGTTACTGAATCAACT+AGG - Chr3:834785-834804 None:intergenic 30.0%
TGCTTAAGAAAAATGACACA+AGG + Chr3:829939-829958 MsG0380011516.01.T02:intron 30.0%
TGGTTACCAGAAAATTGTAT+TGG - Chr3:833599-833618 None:intergenic 30.0%
TGTATGAGTGCTTAAAACTA+TGG - Chr3:836248-836267 None:intergenic 30.0%
TTAAAGGAAGGGAATTTAAG+TGG + Chr3:831951-831970 MsG0380011516.01.T01:intron 30.0%
TTATAATGCAGTATGGTGTT+GGG + Chr3:832964-832983 MsG0380011516.01.T01:CDS 30.0%
TTGATTGTTTCCTATGTTGT+TGG - Chr3:832528-832547 None:intergenic 30.0%
TTTAACTGAAGAATGAGTTG+TGG + Chr3:835784-835803 MsG0380011516.01.T01:intron 30.0%
TTTGTTCCTAAAACACAGAA+TGG - Chr3:835730-835749 None:intergenic 30.0%
! AAATTTAACGTCTGGTTTGA+AGG + Chr3:832293-832312 MsG0380011516.01.T01:intron 30.0%
! ACAGATTGATGGTTTCTTAT+TGG + Chr3:830801-830820 MsG0380011516.01.T01:intron 30.0%
! CGATACAATTATGGTTAGTT+GGG + Chr3:834615-834634 MsG0380011516.01.T01:intron 30.0%
! CTATCGGTGATACTTTATTT+GGG + Chr3:834011-834030 MsG0380011516.01.T01:CDS 30.0%
! GCAATAACTTTTACACCAAA+TGG - Chr3:835060-835079 None:intergenic 30.0%
! GGCAATAGTTAATTTTGCTT+TGG + Chr3:829691-829710 MsG0380011516.01.T02:intron 30.0%
! GTTACGAATTCCTTTATTTC+AGG + Chr3:836423-836442 MsG0380011516.01.T01:intron 30.0%
! GTTGATTCAGTAACTAAGAT+CGG + Chr3:834786-834805 MsG0380011516.01.T01:intron 30.0%
! GTTTTATATAGGCTAGATTG+GGG + Chr3:836325-836344 MsG0380011516.01.T01:intron 30.0%
! TCAATCAATTTTCACGAAAC+GGG - Chr3:834331-834350 None:intergenic 30.0%
! TCTCTTCTTTTTCTGATGTT+GGG + Chr3:831163-831182 MsG0380011516.01.T01:intron 30.0%
! TTCTCTTCTTTTTCTGATGT+TGG + Chr3:831162-831181 MsG0380011516.01.T01:intron 30.0%
! TTTTATATAGGCTAGATTGG+GGG + Chr3:836326-836345 MsG0380011516.01.T01:intron 30.0%
!! ACATAGTTTGTTACGTTAAG+TGG + Chr3:831444-831463 MsG0380011516.01.T01:intron 30.0%
!! CCATATAATTCTGGAATAAG+TGG - Chr3:836683-836702 None:intergenic 30.0%
!! GTTGATGGAAATTTTTGACA+GGG - Chr3:829902-829921 None:intergenic 30.0%
!! GTTGTTTTACTATAGGTTGT+TGG + Chr3:836822-836841 MsG0380011516.01.T01:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG + Chr3:830634-830653 MsG0380011516.01.T01:intron 30.0%
!! TACAAAAGCACTTTAAGCAT+AGG - Chr3:836730-836749 None:intergenic 30.0%
!! TATCTTTAGGACGTAATAAG+TGG + Chr3:832563-832582 MsG0380011516.01.T01:intron 30.0%
!! TGTTGATGGAAATTTTTGAC+AGG - Chr3:829903-829922 None:intergenic 30.0%
!! TTAACATGTAACTTGTTCCT+AGG + Chr3:834476-834495 MsG0380011516.01.T01:intron 30.0%
!!! TAGATATTCATTTTGGGGTT+CGG + Chr3:835000-835019 MsG0380011516.01.T01:intron 30.0%
AAAAGCAATGGCATATGCTT+TGG + Chr3:832353-832372 MsG0380011516.01.T01:intron 35.0%
AAAAGCCTCTTGTGTAAAAC+AGG + Chr3:831586-831605 MsG0380011516.01.T01:intron 35.0%
AAAATCTGCATGACAAAACC+AGG + Chr3:833490-833509 MsG0380011516.01.T01:intron 35.0%
AAAGCAATGGCATATGCTTT+GGG + Chr3:832354-832373 MsG0380011516.01.T01:intron 35.0%
AAAGCCTCTTGTGTAAAACA+GGG + Chr3:831587-831606 MsG0380011516.01.T01:intron 35.0%
AAATGAAGAGAGGGTAATAG+TGG + Chr3:832457-832476 MsG0380011516.01.T01:intron 35.0%
AACAAACTTCACCTTGAAGT+TGG - Chr3:829560-829579 None:intergenic 35.0%
AACTTCCTGGATTTAAAGGA+AGG + Chr3:831939-831958 MsG0380011516.01.T01:intron 35.0%
AAGCTGTCTATTGCATTTGT+AGG + Chr3:832827-832846 MsG0380011516.01.T01:intron 35.0%
AAGTAACAGAAGTAGAAGCT+TGG - Chr3:835380-835399 None:intergenic 35.0%
AAGTGTAATACGAAAGTGGT+AGG - Chr3:832767-832786 None:intergenic 35.0%
AATACAGAACAATCATTGCC+TGG - Chr3:837009-837028 None:intergenic 35.0%
AATATGAATTGGATTGCCTC+TGG - Chr3:831547-831566 None:intergenic 35.0%
AATTCCCTTCCTTTAAATCC+AGG - Chr3:831947-831966 None:intergenic 35.0%
AATTGCTTTGGCATAAGCTT+GGG + Chr3:833697-833716 MsG0380011516.01.T01:intron 35.0%
ACACATTCTTATACATCACC+AGG - Chr3:833353-833372 None:intergenic 35.0%
ACTAACTCAATTCCTGTCAA+AGG - Chr3:836879-836898 None:intergenic 35.0%
ACTTCCTGGATTTAAAGGAA+GGG + Chr3:831940-831959 MsG0380011516.01.T01:intron 35.0%
AGCTTATGCCAAAGCAATTA+TGG - Chr3:833696-833715 None:intergenic 35.0%
AGTGAATTGCGAATAGTGAA+GGG - Chr3:830322-830341 None:intergenic 35.0%
ATAAACTAAGCCTAGTATGC+TGG + Chr3:835460-835479 MsG0380011516.01.T01:intron 35.0%
ATCTAACATGTCCTCATGTT+TGG + Chr3:833659-833678 MsG0380011516.01.T01:intron 35.0%
ATGATAAAAATCTGTCCTCC+TGG + Chr3:835808-835827 MsG0380011516.01.T01:intron 35.0%
CAAATATAAAAAGGGCAACC+CGG - Chr3:831684-831703 None:intergenic 35.0%
CAATTTAGGCTGAATCGATT+CGG + Chr3:831244-831263 MsG0380011516.01.T01:intron 35.0%
CACAGAAGTAAATGAAGAGA+GGG + Chr3:832448-832467 MsG0380011516.01.T01:intron 35.0%
CAGAATGACAGTTAAGAAAC+AGG + Chr3:832231-832250 MsG0380011516.01.T01:intron 35.0%
CCTATCGGTGATACTTTATT+TGG + Chr3:834010-834029 MsG0380011516.01.T01:CDS 35.0%
CGTGACTGTACTATTCAATT+TGG + Chr3:831722-831741 MsG0380011516.01.T01:intron 35.0%
CGTTAAATTTCTTGCACAAC+AGG - Chr3:832283-832302 None:intergenic 35.0%
CTTATAATGCAGTATGGTGT+TGG + Chr3:832963-832982 MsG0380011516.01.T01:CDS 35.0%
CTTGGTCAAAGATAAACAGA+CGG + Chr3:832126-832145 MsG0380011516.01.T01:intron 35.0%
GAAGATACTATACTTGCTTG+CGG - Chr3:833204-833223 None:intergenic 35.0%
GATGATCTTGTTGATGTGAA+GGG + Chr3:835233-835252 MsG0380011516.01.T01:CDS 35.0%
GCAGAATACAATATGCTCAT+CGG - Chr3:830458-830477 None:intergenic 35.0%
GCGATACAATTATGGTTAGT+TGG + Chr3:834614-834633 MsG0380011516.01.T01:intron 35.0%
GGTTAACTTCCTGGATTTAA+AGG + Chr3:831935-831954 MsG0380011516.01.T01:intron 35.0%
GTGTCTCTGTCTTTATTCTT+TGG + Chr3:835664-835683 MsG0380011516.01.T01:intron 35.0%
TAATTGCTTTGGCATAAGCT+TGG + Chr3:833696-833715 MsG0380011516.01.T01:intron 35.0%
TACCACTTTCGTATTACACT+TGG + Chr3:832766-832785 MsG0380011516.01.T01:intron 35.0%
TAGAGATGTACCTTGATAGA+TGG - Chr3:831088-831107 None:intergenic 35.0%
TCCTTTGAACTGCTTTATGA+CGG + Chr3:831786-831805 MsG0380011516.01.T01:intron 35.0%
TCGGTTCTTGATACGTTAAA+TGG - Chr3:832325-832344 None:intergenic 35.0%
TCTAACATGTCCTCATGTTT+GGG + Chr3:833660-833679 MsG0380011516.01.T01:intron 35.0%
TCTAGCAACATTAACCAGAA+GGG - Chr3:836452-836471 None:intergenic 35.0%
TGATAAAAATCTGTCCTCCT+GGG + Chr3:835809-835828 MsG0380011516.01.T01:intron 35.0%
TGATGATCTTGTTGATGTGA+AGG + Chr3:835232-835251 MsG0380011516.01.T01:CDS 35.0%
TGGATGAAGAAGAACCAATT+AGG + Chr3:830356-830375 MsG0380011516.01.T01:intron 35.0%
TGTACTATTCATGTGCTTCT+AGG + Chr3:834403-834422 MsG0380011516.01.T01:intron 35.0%
TGTGCAAGAAATTTAACGTC+TGG + Chr3:832285-832304 MsG0380011516.01.T01:intron 35.0%
TTAGGGACCAAAAATGTTGA+TGG - Chr3:829917-829936 None:intergenic 35.0%
TTATAACTCTTCGGTTCACA+GGG - Chr3:831346-831365 None:intergenic 35.0%
TTATTCGGGCTCAAACAAAA+TGG + Chr3:829409-829428 MsG0380011516.01.T02:CDS 35.0%
TTCCAAGTGTAATACGAAAG+TGG - Chr3:832771-832790 None:intergenic 35.0%
TTCGCGAAAACCAAATAAGA+CGG + Chr3:837048-837067 MsG0380011516.01.T01:three_prime_UTR 35.0%
TTCTCTGAACATTGATGTGA+GGG - Chr3:832398-832417 None:intergenic 35.0%
TTCTTATGTGCAGGAAATGA+TGG + Chr3:832496-832515 MsG0380011516.01.T01:intron 35.0%
TTGGTCAAAGATAAACAGAC+GGG + Chr3:832127-832146 MsG0380011516.01.T01:intron 35.0%
TTTAACGTATCAAGAACCGA+TGG + Chr3:832325-832344 MsG0380011516.01.T01:intron 35.0%
TTTAAGGGGTTAATCTTGGA+TGG - Chr3:835582-835601 None:intergenic 35.0%
TTTCATAATTCTACGGTGTG+GGG - Chr3:831502-831521 None:intergenic 35.0%
TTTCTCTGAACATTGATGTG+AGG - Chr3:832399-832418 None:intergenic 35.0%
! AAAGTGTGTTGTACTTGTTG+AGG + Chr3:830192-830211 MsG0380011516.01.T01:CDS 35.0%
! ACTTCAAGGTGAAGTTTGTT+AGG + Chr3:829560-829579 MsG0380011516.01.T02:CDS 35.0%
! CAAACATCATCCGTCTTATT+TGG - Chr3:837061-837080 None:intergenic 35.0%
! CCAAATAAAGTATCACCGAT+AGG - Chr3:834013-834032 None:intergenic 35.0%
! CTTACATAAGCTTTGTGAGA+CGG - Chr3:830731-830750 None:intergenic 35.0%
! CTTGGATATGATGTCTTTTC+AGG + Chr3:835508-835527 MsG0380011516.01.T01:intron 35.0%
! TAATCTGAAATTCGGCTAGA+AGG - Chr3:831317-831336 None:intergenic 35.0%
! TACTTCTGTTACTTCTAGCT+AGG + Chr3:835386-835405 MsG0380011516.01.T01:intron 35.0%
! TATCATTTGGGTTAACTTCC+TGG + Chr3:831926-831945 MsG0380011516.01.T01:intron 35.0%
! TCATCGCCAATACAATTTTC+TGG + Chr3:833590-833609 MsG0380011516.01.T01:intron 35.0%
! TGGTTAGTTGGGTTGTAAAT+AGG + Chr3:834626-834645 MsG0380011516.01.T01:intron 35.0%
! TTAAAATTGGTGATCTTGGG+TGG + Chr3:832422-832441 MsG0380011516.01.T01:intron 35.0%
! TTCACTCTGTTTTGCATGAA+TGG + Chr3:830336-830355 MsG0380011516.01.T01:intron 35.0%
! TTTGATTTATTCAGTGCTCC+TGG - Chr3:833511-833530 None:intergenic 35.0%
!! GAAACCATGTGCAGTTTTAA+AGG + Chr3:833556-833575 MsG0380011516.01.T01:intron 35.0%
!! GATGGTACAAACCTTTTTCA+TGG - Chr3:835564-835583 None:intergenic 35.0%
!! GGATCATCCTCTTAGTTTTT+AGG + Chr3:831380-831399 MsG0380011516.01.T01:intron 35.0%
!! GTTAAGGGTATCCAATCTAA+TGG + Chr3:831999-832018 MsG0380011516.01.T01:intron 35.0%
!! TTTCAATATTGGTGCTGTGT+AGG + Chr3:830936-830955 MsG0380011516.01.T01:intron 35.0%
!!! AGATATTCATTTTGGGGTTC+GGG + Chr3:835001-835020 MsG0380011516.01.T01:intron 35.0%
!!! CTTGCCTGTTGTTTTACTAT+AGG + Chr3:836815-836834 MsG0380011516.01.T01:intron 35.0%
!!! TGGTTTTGTCATGCAGATTT+TGG - Chr3:833491-833510 None:intergenic 35.0%
AAATGTCTGCGATCACTACT+GGG - Chr3:836299-836318 None:intergenic 40.0%
AACCTTAGCCATGGATCTAT+AGG - Chr3:836641-836660 None:intergenic 40.0%
AACGATTGTTTCAACGGAAC+AGG - Chr3:834864-834883 None:intergenic 40.0%
AAGTAGTAATCCACGAGAAC+AGG - Chr3:835148-835167 None:intergenic 40.0%
AATCTGACAATCACTGGAAC+TGG + Chr3:831819-831838 MsG0380011516.01.T01:intron 40.0%
ACAATTGAGTCATCTCCATC+AGG - Chr3:833390-833409 None:intergenic 40.0%
ACAGCCTCATAGTCTAAAAG+AGG - Chr3:836478-836497 None:intergenic 40.0%
ACGTTAAGTGGCTTCCTATT+TGG + Chr3:831456-831475 MsG0380011516.01.T01:intron 40.0%
ACTCCCATGGGCAATTTATT+CGG + Chr3:829394-829413 MsG0380011516.01.T02:CDS 40.0%
ACTTTGCTGATGTGAACAGA+TGG + Chr3:829491-829510 MsG0380011516.01.T02:CDS 40.0%
AGAACACTCCTATAGATCCA+TGG + Chr3:836630-836649 MsG0380011516.01.T01:CDS 40.0%
AGAGAGGGTAATAGTGGTTA+TGG + Chr3:832463-832482 MsG0380011516.01.T01:intron 40.0%
AGCATGGAATCAAAGTTGCT+AGG + Chr3:833107-833126 MsG0380011516.01.T01:CDS 40.0%
AGCCGAATTTCAGATTACCA+AGG + Chr3:831320-831339 MsG0380011516.01.T01:intron 40.0%
AGCTCGACTGACAATAATCA+CGG - Chr3:833000-833019 None:intergenic 40.0%
AGGGATACTACACATGAGTA+CGG + Chr3:834590-834609 MsG0380011516.01.T01:intron 40.0%
AGTAGTAATCCACGAGAACA+GGG - Chr3:835147-835166 None:intergenic 40.0%
AGTTCCAGTGATTGTCAGAT+TGG - Chr3:831820-831839 None:intergenic 40.0%
AGTTTCTTACAGAATACCGC+TGG - Chr3:831977-831996 None:intergenic 40.0%
ATAACCACGGCTCAATTGTA+AGG - Chr3:835841-835860 None:intergenic 40.0%
ATAGGGACCAAAAATGCTGA+TGG - Chr3:829855-829874 None:intergenic 40.0%
ATAGTACAGTCACGGAACTT+TGG - Chr3:831716-831735 None:intergenic 40.0%
ATCATGACTCCTCATATTGC+AGG + Chr3:836601-836620 MsG0380011516.01.T01:CDS 40.0%
ATCCAATCTAATGGAGTCGT+TGG + Chr3:832008-832027 MsG0380011516.01.T01:intron 40.0%
ATCTGATCATCGGGATCAAA+TGG - Chr3:836562-836581 None:intergenic 40.0%
ATCTGTCATGTCATACGACT+AGG - Chr3:830787-830806 None:intergenic 40.0%
ATGATAGTTGGCAATAGCCT+TGG - Chr3:832880-832899 None:intergenic 40.0%
ATGGAATCAGCCAACAACAT+AGG + Chr3:832515-832534 MsG0380011516.01.T01:intron 40.0%
ATGTAAGATGGTTACCAGCA+TGG - Chr3:829353-829372 None:intergenic 40.0%
ATGTCCTCATGTTTGGGTAT+GGG + Chr3:833666-833685 MsG0380011516.01.T01:intron 40.0%
CATCGATATCAACACCTAAG+AGG - Chr3:833078-833097 None:intergenic 40.0%
CGAGAAGAGAAAAAGATGCA+GGG - Chr3:833792-833811 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + Chr3:831618-831637 MsG0380011516.01.T01:intron 40.0%
CGTATGACATGACAGATTGA+TGG + Chr3:830790-830809 MsG0380011516.01.T01:intron 40.0%
CGTTGGAGAAGAATGTTGAA+GGG + Chr3:832025-832044 MsG0380011516.01.T01:intron 40.0%
CTCTAGCAACATTAACCAGA+AGG - Chr3:836453-836472 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG + Chr3:831592-831611 MsG0380011516.01.T01:intron 40.0%
CTGCACATGGTTTCTACAAT+TGG - Chr3:833550-833569 None:intergenic 40.0%
CTTTGCTGATGTGAACAGAT+GGG + Chr3:829492-829511 MsG0380011516.01.T02:CDS 40.0%
GAATACCCAAATTTGAGTCC+TGG + Chr3:831266-831285 MsG0380011516.01.T01:intron 40.0%
GAGTGAATTGCGAATAGTGA+AGG - Chr3:830323-830342 None:intergenic 40.0%
GCACAGAAGTAAATGAAGAG+AGG + Chr3:832447-832466 MsG0380011516.01.T01:intron 40.0%
GCAGAATCATCCATCTATCA+AGG + Chr3:831075-831094 MsG0380011516.01.T01:CDS 40.0%
GCAGGTCAACTAAAAGAAAC+TGG + Chr3:833623-833642 MsG0380011516.01.T01:intron 40.0%
GCCAAAAATTCCAGCATACT+AGG - Chr3:835473-835492 None:intergenic 40.0%
GCTGTGTAGGAAAAATCTGA+TGG + Chr3:830949-830968 MsG0380011516.01.T01:intron 40.0%
GTAAAAGTTGCACCACATGA+GGG - Chr3:834923-834942 None:intergenic 40.0%
GTGAAGATGCAAAAACTGCT+TGG + Chr3:832108-832127 MsG0380011516.01.T01:intron 40.0%
GTGGTCAAAAACCTTGAATC+CGG + Chr3:836496-836515 MsG0380011516.01.T01:CDS 40.0%
GTTATAACTCTTCGGTTCAC+AGG - Chr3:831347-831366 None:intergenic 40.0%
TAACCACGGCTCAATTGTAA+GGG - Chr3:835840-835859 None:intergenic 40.0%
TATTGCTACAAAGCGGAGTT+GGG + Chr3:835074-835093 MsG0380011516.01.T01:CDS 40.0%
TCATCAAAAGCAATGTCCCA+TGG - Chr3:834107-834126 None:intergenic 40.0%
TCCGTCATAAAGCAGTTCAA+AGG - Chr3:831790-831809 None:intergenic 40.0%
TCGTTGGAGAAGAATGTTGA+AGG + Chr3:832024-832043 MsG0380011516.01.T01:intron 40.0%
TCTGTCATGTCATACGACTA+GGG - Chr3:830786-830805 None:intergenic 40.0%
TGATAGTTGGCAATAGCCTT+GGG - Chr3:832879-832898 None:intergenic 40.0%
TGCAGATTTCCATACAGCAA+AGG + Chr3:833975-833994 MsG0380011516.01.T01:CDS 40.0%
TGGGAAAGCCATAATTGCTT+TGG + Chr3:833685-833704 MsG0380011516.01.T01:intron 40.0%
TGTAAAAGTTGCACCACATG+AGG - Chr3:834924-834943 None:intergenic 40.0%
TTATTGCTACAAAGCGGAGT+TGG + Chr3:835073-835092 MsG0380011516.01.T01:CDS 40.0%
TTCAGTTGCATGTGCTGAAA+TGG + Chr3:833153-833172 MsG0380011516.01.T01:CDS 40.0%
TTTCAGTTACGCTATCCTGA+TGG + Chr3:833372-833391 MsG0380011516.01.T01:intron 40.0%
! AAATATGACAGTGTTGGAGG+GGG + Chr3:829441-829460 MsG0380011516.01.T02:CDS 40.0%
! AGGAGTTACCAGCTTTTGAT+GGG + Chr3:832251-832270 MsG0380011516.01.T01:intron 40.0%
! AGGTCCTCTTTTAGACTATG+AGG + Chr3:836471-836490 MsG0380011516.01.T01:CDS 40.0%
! ATAAGCTTTGTGAGACGGTT+TGG - Chr3:830726-830745 None:intergenic 40.0%
! ATGAGTAGTGGAATGAATGG+AGG + Chr3:832065-832084 MsG0380011516.01.T01:intron 40.0%
! ATGTTTCTATGCGCATGAAC+AGG - Chr3:830105-830124 None:intergenic 40.0%
! CAAATATGACAGTGTTGGAG+GGG + Chr3:829440-829459 MsG0380011516.01.T02:CDS 40.0%
! CAAGGTCCATTCTGTGTTTT+AGG + Chr3:835721-835740 MsG0380011516.01.T01:intron 40.0%
! CACTAATAGTCGCTCTGAAT+TGG - Chr3:832091-832110 None:intergenic 40.0%
! CATTTGTTTCTTCCCTCATG+TGG + Chr3:834908-834927 MsG0380011516.01.T01:intron 40.0%
! CCAGGCTAAGTATTTTCTTC+TGG - Chr3:833335-833354 None:intergenic 40.0%
! CTTAAAAAGGAGCGTGAAGT+GGG + Chr3:834208-834227 MsG0380011516.01.T01:intron 40.0%
! CTTACCCTGTTTTACACAAG+AGG - Chr3:831594-831613 None:intergenic 40.0%
! CTTCTGGTTAATGTTGCTAG+AGG + Chr3:836451-836470 MsG0380011516.01.T01:CDS 40.0%
! GCAAATATGACAGTGTTGGA+GGG + Chr3:829439-829458 MsG0380011516.01.T02:CDS 40.0%
! GCCTAGTATGCTGGAATTTT+TGG + Chr3:835469-835488 MsG0380011516.01.T01:intron 40.0%
! GGCATGCATACTTATTGACT+TGG + Chr3:835490-835509 MsG0380011516.01.T01:intron 40.0%
! GGCCTTGGTAATCTGAAATT+CGG - Chr3:831325-831344 None:intergenic 40.0%
! TAAGCTTTGTGAGACGGTTT+GGG - Chr3:830725-830744 None:intergenic 40.0%
! TCTTTTAGACTATGAGGCTG+TGG + Chr3:836477-836496 MsG0380011516.01.T01:CDS 40.0%
! TGTTTCTATGCGCATGAACA+GGG - Chr3:830104-830123 None:intergenic 40.0%
! TTTGAGATTAAGGCCCTGTT+TGG + Chr3:830493-830512 MsG0380011516.01.T01:intron 40.0%
!! ACTATAGGTTGTTGGTGATG+TGG + Chr3:836830-836849 MsG0380011516.01.T01:intron 40.0%
!! ACTGAAATAGATCGGCTTGT+TGG + Chr3:834708-834727 MsG0380011516.01.T01:intron 40.0%
!! CTGAAATAGATCGGCTTGTT+GGG + Chr3:834709-834728 MsG0380011516.01.T01:intron 40.0%
!! GAGGCTCTGAAATTCATGTA+AGG + Chr3:834437-834456 MsG0380011516.01.T01:intron 40.0%
!! GATATGATGTCTTTTCAGGC+TGG + Chr3:835512-835531 MsG0380011516.01.T01:intron 40.0%
!! TGATGATGGTTAGTTGCATG+AGG + Chr3:834121-834140 MsG0380011516.01.T01:intron 40.0%
!! TGGGACATTGCTTTTGATGA+TGG + Chr3:834107-834126 MsG0380011516.01.T01:intron 40.0%
!! TGTCAGTCGAGCTTTATTGA+TGG + Chr3:833007-833026 MsG0380011516.01.T01:intron 40.0%
!! TTTAGGTGTCTGATGGACTT+TGG + Chr3:834254-834273 MsG0380011516.01.T01:intron 40.0%
!! TTTCTTTTAGTTGACCTGCG+AGG - Chr3:833622-833641 None:intergenic 40.0%
!!! ACCATGTGCAGTTTTAAAGG+CGG + Chr3:833559-833578 MsG0380011516.01.T01:intron 40.0%
!!! ACGACTCGTGTTTTGTTTTG+TGG + Chr3:831010-831029 MsG0380011516.01.T01:CDS 40.0%
!!! GGATGTGTTTTTTGATCCAG+AGG + Chr3:831528-831547 MsG0380011516.01.T01:intron 40.0%
AACCTTGAATCCGGACACTT+AGG + Chr3:836505-836524 MsG0380011516.01.T01:CDS 45.0%
AAGGGAATTTAAGTGGCCAG+CGG + Chr3:831958-831977 MsG0380011516.01.T01:intron 45.0%
AATCACTGGAACTGGTGTGA+TGG + Chr3:831827-831846 MsG0380011516.01.T01:intron 45.0%
AATGCTCAGAGGAGATTCCT+AGG - Chr3:834496-834515 None:intergenic 45.0%
AATTTCCAGTAGCACCACTG+GGG - Chr3:833135-833154 None:intergenic 45.0%
AGATGAGAACATGGGAACTG+AGG - Chr3:831037-831056 None:intergenic 45.0%
AGCCCGAATAAATTGCCCAT+GGG - Chr3:829400-829419 None:intergenic 45.0%
AGTACGGGGCGATACAATTA+TGG + Chr3:834606-834625 MsG0380011516.01.T01:intron 45.0%
AGTAGCCTAAGGCTGTAAGT+TGG + Chr3:836008-836027 MsG0380011516.01.T01:intron 45.0%
ATCCATGGCTAAGGTTTGTG+TGG + Chr3:836645-836664 MsG0380011516.01.T01:intron 45.0%
ATCGATGCTGCAACAAAGCA+TGG + Chr3:833091-833110 MsG0380011516.01.T01:CDS 45.0%
CAAAGATAAACAGACGGGCA+CGG + Chr3:832132-832151 MsG0380011516.01.T01:intron 45.0%
CAATTGTAAGGGAACATCCC+AGG - Chr3:835829-835848 None:intergenic 45.0%
CATGCTGGAAATCCTTTGAC+AGG + Chr3:836864-836883 MsG0380011516.01.T01:CDS 45.0%
CATGTCCTCATGTTTGGGTA+TGG + Chr3:833665-833684 MsG0380011516.01.T01:intron 45.0%
CCTTGGGAATTTCTTCCAAC+GGG - Chr3:832863-832882 None:intergenic 45.0%
CTCCAACGACTCCATTAGAT+TGG - Chr3:832013-832032 None:intergenic 45.0%
CTCCCATGGGCAATTTATTC+GGG + Chr3:829395-829414 MsG0380011516.01.T02:CDS 45.0%
CTCCTATAGATCCATGGCTA+AGG + Chr3:836636-836655 MsG0380011516.01.T01:CDS 45.0%
CTGAACATTGATGTGAGGGA+CGG - Chr3:832394-832413 None:intergenic 45.0%
CTTTCCCATACCCAAACATG+AGG - Chr3:833673-833692 None:intergenic 45.0%
GAAATGTCTGCGATCACTAC+TGG - Chr3:836300-836319 None:intergenic 45.0%
GAATTTCCAGTAGCACCACT+GGG - Chr3:833136-833155 None:intergenic 45.0%
GAGATCATCCTCTAACCAAG+TGG + Chr3:831196-831215 MsG0380011516.01.T01:intron 45.0%
GATGCCAATCTGACAATCAC+TGG + Chr3:831813-831832 MsG0380011516.01.T01:intron 45.0%
GCACGACGATTGAAACCATT+TGG + Chr3:835042-835061 MsG0380011516.01.T01:CDS 45.0%
GCCTTGGGAATTTCTTCCAA+CGG - Chr3:832864-832883 None:intergenic 45.0%
GCGAGAAGAGAAAAAGATGC+AGG - Chr3:833793-833812 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + Chr3:831617-831636 MsG0380011516.01.T01:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + Chr3:831614-831633 MsG0380011516.01.T01:intron 45.0%
GGAGAAGAGAAGTGAGTGTT+GGG - Chr3:830246-830265 None:intergenic 45.0%
GGATACTACACATGAGTACG+GGG + Chr3:834592-834611 MsG0380011516.01.T01:intron 45.0%
GGCTCAAACAAAATGGTAGC+GGG + Chr3:829416-829435 MsG0380011516.01.T02:CDS 45.0%
GGGATACTACACATGAGTAC+GGG + Chr3:834591-834610 MsG0380011516.01.T01:intron 45.0%
GGGCTCAAACAAAATGGTAG+CGG + Chr3:829415-829434 MsG0380011516.01.T02:CDS 45.0%
GTGGTTCTTCAACTTCATGC+TGG + Chr3:836849-836868 MsG0380011516.01.T01:CDS 45.0%
GTTGTGTTAGAGACTCCCAT+GGG + Chr3:829382-829401 MsG0380011516.01.T02:CDS 45.0%
GTTTCTATGCGCATGAACAG+GGG - Chr3:830103-830122 None:intergenic 45.0%
TCATACGACTAGGGTCTGTT+TGG - Chr3:830777-830796 None:intergenic 45.0%
TCATCCTCTAACCAAGTGGA+TGG + Chr3:831200-831219 MsG0380011516.01.T01:intron 45.0%
TCCAGCCAGGACTCAAATTT+GGG - Chr3:831274-831293 None:intergenic 45.0%
TCCATACAGCAAAGGAAGCT+TGG + Chr3:833983-834002 MsG0380011516.01.T01:CDS 45.0%
TCCTCAAGTCAGCATGTGAT+TGG - Chr3:836050-836069 None:intergenic 45.0%
TCTCTTCTCCACAACAACTC+AGG + Chr3:830256-830275 MsG0380011516.01.T01:CDS 45.0%
TCTGTAACGCCTGCAATATG+AGG - Chr3:836613-836632 None:intergenic 45.0%
TGAATTTCCAGTAGCACCAC+TGG - Chr3:833137-833156 None:intergenic 45.0%
TGGAGAAGAGAAGTGAGTGT+TGG - Chr3:830247-830266 None:intergenic 45.0%
TGTTGTGTTAGAGACTCCCA+TGG + Chr3:829381-829400 MsG0380011516.01.T02:CDS 45.0%
TTCCAGCCAGGACTCAAATT+TGG - Chr3:831275-831294 None:intergenic 45.0%
TTGAATCCGGACACTTAGGA+GGG + Chr3:836509-836528 MsG0380011516.01.T01:CDS 45.0%
TTGTGTCCAGGTGCACAAAA+GGG - Chr3:833820-833839 None:intergenic 45.0%
TTGTTTCAACGGAACAGGCT+AGG - Chr3:834859-834878 None:intergenic 45.0%
TTTGTGTCCAGGTGCACAAA+AGG - Chr3:833821-833840 None:intergenic 45.0%
! AACTAAGATCGGCTCAAGCT+AGG + Chr3:834797-834816 MsG0380011516.01.T01:intron 45.0%
! AATGGCATATGCTTTGGGTG+CGG + Chr3:832359-832378 MsG0380011516.01.T01:intron 45.0%
! ATTTTCCTTCCCTGTTCTCG+TGG + Chr3:835135-835154 MsG0380011516.01.T01:intron 45.0%
! CAGAGCTGATTCTTATGTGC+AGG + Chr3:832487-832506 MsG0380011516.01.T01:intron 45.0%
! CAGGAGTTACCAGCTTTTGA+TGG + Chr3:832250-832269 MsG0380011516.01.T01:intron 45.0%
! CCACTTCACGCTCCTTTTTA+AGG - Chr3:834210-834229 None:intergenic 45.0%
! CCTTAAAAAGGAGCGTGAAG+TGG + Chr3:834207-834226 MsG0380011516.01.T01:intron 45.0%
! CTAGAAGGTACGTCTGACTA+AGG - Chr3:831302-831321 None:intergenic 45.0%
! GCATGACAGATTTTGTGTCC+AGG - Chr3:833832-833851 None:intergenic 45.0%
! GCTCAAACAAAATGGTAGCG+GGG + Chr3:829417-829436 MsG0380011516.01.T02:CDS 45.0%
! GGAGTTACCAGCTTTTGATG+GGG + Chr3:832252-832271 MsG0380011516.01.T01:intron 45.0%
! GGCAAATATGACAGTGTTGG+AGG + Chr3:829438-829457 MsG0380011516.01.T02:CDS 45.0%
! GGCATGAGTAGTGGAATGAA+TGG + Chr3:832062-832081 MsG0380011516.01.T01:intron 45.0%
! GTAAGTTGGAGGACATAGTG+AGG + Chr3:836022-836041 MsG0380011516.01.T01:intron 45.0%
! TCCAAGCTTCCTTTGCTGTA+TGG - Chr3:833987-834006 None:intergenic 45.0%
! TGCTCATACTTTAGCTCGAG+TGG + Chr3:829600-829619 MsG0380011516.01.T02:CDS 45.0%
! TTTATTTCAGGGTGCCCTTC+TGG + Chr3:836435-836454 MsG0380011516.01.T01:intron 45.0%
!! AATGTTGAAGGGCTAGCTTC+TGG + Chr3:832036-832055 MsG0380011516.01.T01:intron 45.0%
!! ACCGCCTTTAAAACTGCACA+TGG - Chr3:833563-833582 None:intergenic 45.0%
!! AGAAGGGCACCCTGAAATAA+AGG - Chr3:836436-836455 None:intergenic 45.0%
!! ATGTTGAAGGGCTAGCTTCT+GGG + Chr3:832037-832056 MsG0380011516.01.T01:intron 45.0%
!! CCATTGCTTTTCCTCTCCAT+CGG - Chr3:832344-832363 None:intergenic 45.0%
!! TCCAATCACATGCTGACTTG+AGG + Chr3:836046-836065 MsG0380011516.01.T01:intron 45.0%
!!! ATTTTGGGGTTCGGGAACAT+TGG + Chr3:835009-835028 MsG0380011516.01.T01:CDS 45.0%
!!! GAAAAAAAAATATATATTTT+AGG + Chr3:829737-829756 MsG0380011516.01.T02:intron 5.0%
!!! TTTAATTTTTTTTTTTATCA+AGG + Chr3:834518-834537 MsG0380011516.01.T01:intron 5.0%
AAAGTTGCTAGGATCCCCAG+TGG + Chr3:833118-833137 MsG0380011516.01.T01:CDS 50.0%
ACCCAAATTTGAGTCCTGGC+TGG + Chr3:831270-831289 MsG0380011516.01.T01:intron 50.0%
AGCCACACAAACCTTAGCCA+TGG - Chr3:836650-836669 None:intergenic 50.0%
AGCTAGGTCTGATGTAGGCT+AGG + Chr3:834813-834832 MsG0380011516.01.T01:intron 50.0%
AGGAAGCTTGGAGAGCCTAT+CGG + Chr3:833995-834014 MsG0380011516.01.T01:CDS 50.0%
ATCACTCGAGACCATCCACT+TGG - Chr3:831214-831233 None:intergenic 50.0%
ATGTGCTTCTAGGCTGTGTC+TGG + Chr3:834413-834432 MsG0380011516.01.T01:intron 50.0%
CAAAACTGAGCTGTAGCAGC+AGG + Chr3:832197-832216 MsG0380011516.01.T01:intron 50.0%
CCACAACAACTCAGGTTTCC+AGG + Chr3:830264-830283 MsG0380011516.01.T01:CDS 50.0%
CCCGTTGGAAGAAATTCCCA+AGG + Chr3:832860-832879 MsG0380011516.01.T01:CDS 50.0%
CCGATGGAGAGGAAAAGCAA+TGG + Chr3:832341-832360 MsG0380011516.01.T01:intron 50.0%
CCTGGAAACCTGAGTTGTTG+TGG - Chr3:830267-830286 None:intergenic 50.0%
CGACTAGGGTCTGTTTGGAT+TGG - Chr3:830772-830791 None:intergenic 50.0%
CGGGGCAAATATGACAGTGT+TGG + Chr3:829435-829454 MsG0380011516.01.T02:CDS 50.0%
CGTATCAAGAACCGATGGAG+AGG + Chr3:832330-832349 MsG0380011516.01.T01:intron 50.0%
CTCCTAAGTGTCCGGATTCA+AGG - Chr3:836510-836529 None:intergenic 50.0%
CTTGAATCCGGACACTTAGG+AGG + Chr3:836508-836527 MsG0380011516.01.T01:CDS 50.0%
GACTAAGGATTGTTCCAGCC+AGG - Chr3:831287-831306 None:intergenic 50.0%
GAGACCATCCACTTGGTTAG+AGG - Chr3:831207-831226 None:intergenic 50.0%
GAGCCCGAATAAATTGCCCA+TGG - Chr3:829401-829420 None:intergenic 50.0%
GCTCAAGCTAGGTCTGATGT+AGG + Chr3:834808-834827 MsG0380011516.01.T01:intron 50.0%
GGATTTGCCCCATCAAAAGC+TGG - Chr3:832262-832281 None:intergenic 50.0%
GTAATCCACGAGAACAGGGA+AGG - Chr3:835143-835162 None:intergenic 50.0%
GTCCTCCAACTTACAGCCTT+AGG - Chr3:836016-836035 None:intergenic 50.0%
GTGAAGTGGGTAGATGATCC+AGG + Chr3:834221-834240 MsG0380011516.01.T01:intron 50.0%
GTTCCCTTACAATTGAGCCG+TGG + Chr3:835834-835853 MsG0380011516.01.T01:intron 50.0%
TCCAGGTGCACAAAAGGGAA+TGG - Chr3:833815-833834 None:intergenic 50.0%
TCTGATGTAGGCTAGGCCAT+AGG + Chr3:834820-834839 MsG0380011516.01.T01:intron 50.0%
TGCACACACACACACACGTA+GGG + Chr3:835697-835716 MsG0380011516.01.T01:intron 50.0%
TTGTAAGGGAACATCCCAGG+AGG - Chr3:835826-835845 None:intergenic 50.0%
! AATGCAGTATGGTGTTGGGC+TGG + Chr3:832968-832987 MsG0380011516.01.T01:CDS 50.0%
! AGCCTAAGGCTGTAAGTTGG+AGG + Chr3:836011-836030 MsG0380011516.01.T01:intron 50.0%
! CTGCTGCTACAGCTCAGTTT+TGG - Chr3:832199-832218 None:intergenic 50.0%
! TATGCTTTGGGTGCGGAGAA+AGG + Chr3:832366-832385 MsG0380011516.01.T01:intron 50.0%
! TGGCTCTGTCCATGCAACAT+CGG - Chr3:836542-836561 None:intergenic 50.0%
!! CTTTTAGTTGACCTGCGAGG+TGG - Chr3:833619-833638 None:intergenic 50.0%
!! GTAGGTTGATGTTCTCCCGT+TGG + Chr3:832845-832864 MsG0380011516.01.T01:intron 50.0%
!! TTCTGGGTTGGCATGAGTAG+TGG + Chr3:832053-832072 MsG0380011516.01.T01:intron 50.0%
!! TTTTCTGGTAACCACCTCGC+AGG + Chr3:833605-833624 MsG0380011516.01.T01:intron 50.0%
ACTAGAGCTCCCGCATATGC+AGG - Chr3:831658-831677 None:intergenic 55.0%
AGCTCGAGTGGCCTGTTCTT+GGG + Chr3:829612-829631 MsG0380011516.01.T02:CDS 55.0%
AGGCCATAGGCTCCATTGAC+CGG + Chr3:834833-834852 MsG0380011516.01.T01:intron 55.0%
CACACACACACGTAGGGTCA+AGG + Chr3:835703-835722 MsG0380011516.01.T01:intron 55.0%
CTACTGGGTTCAAGCGCAAG+AGG - Chr3:836284-836303 None:intergenic 55.0%
CTAGAGCTCCCGCATATGCA+GGG - Chr3:831657-831676 None:intergenic 55.0%
CTTCTAGGCTGTGTCTGGAG+AGG + Chr3:834418-834437 MsG0380011516.01.T01:intron 55.0%
GGCTAGGAACCGATGTTGCA+TGG + Chr3:836530-836549 MsG0380011516.01.T01:CDS 55.0%
GTGCACACACACACACACGT+AGG + Chr3:835696-835715 MsG0380011516.01.T01:intron 55.0%
TAGCTCGAGTGGCCTGTTCT+TGG + Chr3:829611-829630 MsG0380011516.01.T02:CDS 55.0%
TCCTAGCCCTCCTAAGTGTC+CGG - Chr3:836518-836537 None:intergenic 55.0%
TGGGTTCAAGCGCAAGAGGT+TGG - Chr3:836280-836299 None:intergenic 55.0%
TTCAACGGAACAGGCTAGGC+CGG - Chr3:834855-834874 None:intergenic 55.0%
! ACGGTGACTAGCCCAAGAAC+AGG - Chr3:829626-829645 None:intergenic 55.0%
! CAGTATGGTGTTGGGCTGGA+AGG + Chr3:832972-832991 MsG0380011516.01.T01:CDS 55.0%
! GCCATTCCCTTTTGTGCACC+TGG + Chr3:833811-833830 MsG0380011516.01.T01:intron 55.0%
! TATGACAGTGTTGGAGGGGG+AGG + Chr3:829444-829463 MsG0380011516.01.T02:CDS 55.0%
!! TGAAGGGCTAGCTTCTGGGT+TGG + Chr3:832041-832060 MsG0380011516.01.T01:intron 55.0%
AGGCCGGTCAATGGAGCCTA+TGG - Chr3:834839-834858 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+CGG - Chr3:831645-831664 None:intergenic 60.0%
CTCTTCGGTTCACAGGGCCT+TGG - Chr3:831340-831359 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + Chr3:831645-831664 MsG0380011516.01.T01:intron 60.0%
GAACAGGCTAGGCCGGTCAA+TGG - Chr3:834848-834867 None:intergenic 60.0%
TCCGGACACTTAGGAGGGCT+AGG + Chr3:836514-836533 MsG0380011516.01.T01:CDS 60.0%
TTCCCGGACCCTGCATATGC+GGG + Chr3:831646-831665 MsG0380011516.01.T01:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + Chr3:831662-831681 MsG0380011516.01.T01:intron 60.0%
! CAAATGGTGGGACCGCTTCC+CGG + Chr3:831630-831649 MsG0380011516.01.T01:intron 60.0%
!! AGGATCCCCAGTGGTGCTAC+TGG + Chr3:833127-833146 MsG0380011516.01.T01:CDS 60.0%
CGGGAAGCGGTCCCACCATT+TGG - Chr3:831632-831651 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - Chr3:831651-831670 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - Chr3:831652-831671 None:intergenic 65.0%
GTGGATGTCGCGCTCCATGC+TGG + Chr3:829336-829355 MsG0380011516.01.T02:CDS 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + Chr3:831663-831682 MsG0380011516.01.T01:intron 65.0%
!! AGCGCAAGAGGTTGGTGCGC+AGG - Chr3:836272-836291 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 829334 837125 829334 ID=MsG0380011516.01;Name=MsG0380011516.01
Chr3 mRNA 830126 837125 830126 ID=MsG0380011516.01.T01;Parent=MsG0380011516.01;Name=MsG0380011516.01.T01;_AED=0.49;_eAED=0.49;_QI=56|1|1|1|0.66|0.7|10|220|382
Chr3 exon 830126 830285 830126 ID=MsG0380011516.01.T01:exon:1027;Parent=MsG0380011516.01.T01
Chr3 exon 830958 831096 830958 ID=MsG0380011516.01.T01:exon:1028;Parent=MsG0380011516.01.T01
Chr3 exon 832849 832993 832849 ID=MsG0380011516.01.T01:exon:1029;Parent=MsG0380011516.01.T01
Chr3 exon 833083 833210 833083 ID=MsG0380011516.01.T01:exon:1030;Parent=MsG0380011516.01.T01
Chr3 exon 833968 834039 833968 ID=MsG0380011516.01.T01:exon:1031;Parent=MsG0380011516.01.T01
Chr3 exon 835003 835132 835003 ID=MsG0380011516.01.T01:exon:1032;Parent=MsG0380011516.01.T01
Chr3 exon 835225 835331 835225 ID=MsG0380011516.01.T01:exon:1033;Parent=MsG0380011516.01.T01
Chr3 exon 835530 835571 835530 ID=MsG0380011516.01.T01:exon:1034;Parent=MsG0380011516.01.T01
Chr3 exon 836445 836657 836445 ID=MsG0380011516.01.T01:exon:1035;Parent=MsG0380011516.01.T01
Chr3 exon 836837 837125 836837 ID=MsG0380011516.01.T01:exon:1036;Parent=MsG0380011516.01.T01
Chr3 five_prime_UTR 830126 830181 830126 ID=MsG0380011516.01.T01:five_prime_utr;Parent=MsG0380011516.01.T01
Chr3 CDS 830182 830285 830182 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 830958 831096 830958 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 832849 832993 832849 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 833083 833210 833083 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 833968 834039 833968 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 835003 835132 835003 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 835225 835331 835225 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 835530 835571 835530 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 836445 836657 836445 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 CDS 836837 836905 836837 ID=MsG0380011516.01.T01:cds;Parent=MsG0380011516.01.T01
Chr3 three_prime_UTR 836906 837125 836906 ID=MsG0380011516.01.T01:three_prime_utr;Parent=MsG0380011516.01.T01
Chr3 mRNA 829334 831111 829334 ID=MsG0380011516.01.T02;Parent=MsG0380011516.01;Name=MsG0380011516.01.T02;_AED=0.59;_eAED=0.71;_QI=0|0|0|1|0|0|3|0|198
Chr3 exon 829334 829637 829334 ID=MsG0380011516.01.T02:exon:1037;Parent=MsG0380011516.01.T02
Chr3 exon 830179 830289 830179 ID=MsG0380011516.01.T02:exon:1038;Parent=MsG0380011516.01.T02
Chr3 exon 830930 831111 830930 ID=MsG0380011516.01.T02:exon:1039;Parent=MsG0380011516.01.T02
Chr3 CDS 829334 829637 829334 ID=MsG0380011516.01.T02:cds;Parent=MsG0380011516.01.T02
Chr3 CDS 830179 830289 830179 ID=MsG0380011516.01.T02:cds;Parent=MsG0380011516.01.T02
Chr3 CDS 830930 831111 830930 ID=MsG0380011516.01.T02:cds;Parent=MsG0380011516.01.T02
Gene Sequence

>MsG0380011516.01.T02

ATGTGGATGTCGCGCTCCATGCTGGTAACCATCTTACATCTTTTGCATGTTGTGTTAGAGACTCCCATGGGCAATTTATTCGGGCTCAAACAAAATGGTAGCGGGGCAAATATGACAGTGTTGGAGGGGGAGGCTATAACCTTACTTGATGTCATTCACTTTGCTGATGTGAACAGATGGGATCGAGTTGTTTCTAATATTATTTATCATTTATCTTTACATTCCAACTTCAAGGTGAAGTTTGTTAGGAGACAAGCCAACATTGTTGCTCATACTTTAGCTCGAGTGGCCTGTTCTTGGGCTAAAAATGAGAAGAGAAAGTGTGTTGTACTTGTTGAGGAGAACCAAATCTTTGTTTCAACGAAAATCCCAACACTCACTTCTCTTCTCCACAACAACTCAGGTTTCCAGGTTCCTATAATTTCAATATTGGTGCTGTGTAGGAAAAATCTGATGGAGAGAAATGGGAGCATGATAAACGATGTTGAGAGAAAAACGACTCGTGTTTTGTTTTGTGGACCTCAGTTCCCATGTTCTCATCTATATACAACAGAGTATTTGCAGAATCATCCATCTATCAAGGTACATCTCTATTAG

>MsG0380011516.01.T01

ATGAGAAGAGAAAGTGTGTTGTACTTGTTGAGGAGAACCAAATCTTTGTTTCAACGAAAATCCCAACACTCACTTCTCTTCTCCACAACAACTCAGGTTTCCAGGAAAAATCTGATGGAGAGAAATGGGAGCATGATAAACGATGTTGAGAGAAAAACGACTCGTGTTTTGTTTTGTGGACCTCAGTTCCCATGTTCTCATCTATATACAACAGAGTATTTGCAGAATCATCCATCTATCAAGGTTGATGTTCTCCCGTTGGAAGAAATTCCCAAGGCTATTGCCAACTATCATGTTTGTGTAGTAAAAATGATGAAGCTAGATTCAAACATAATTTCTCGTGCAGTTCAGATGAAGCTTATAATGCAGTATGGTGTTGGGCTGGAAGGTGTTGATATCGATGCTGCAACAAAGCATGGAATCAAAGTTGCTAGGATCCCCAGTGGTGCTACTGGAAATTCAGTTGCATGTGCTGAAATGGCCATATATCTAATGTTGGGTCTTCTCCGCAAGCAAAATGAAATGCAGATTTCCATACAGCAAAGGAAGCTTGGAGAGCCTATCGGTGATACTTTATTTGGGAAAACTATATTCATTTTGGGGTTCGGGAACATTGGAATTGATTTAGCACGACGATTGAAACCATTTGGTGTAAAAGTTATTGCTACAAAGCGGAGTTGGGCTTCATATGCACAAAACACTATCGAATTAAATAGAAATGATGTTGATGATCTTGTTGATGTGAAGGGTAGTCATGAAGATATATATGACTTCGCAACGAAAGCTGACATTGTTGCTTGCTGCTTAAACTTAAACAGTGAAACGGCTGGTATTGTCAACAATAACTTCATTTCTTCCATGAAAAAGGGTGCCCTTCTGGTTAATGTTGCTAGAGGTCCTCTTTTAGACTATGAGGCTGTGGTCAAAAACCTTGAATCCGGACACTTAGGAGGGCTAGGAACCGATGTTGCATGGACAGAGCCATTTGATCCCGATGATCAGATATTGAAATTTAAGAACGTCATCATGACTCCTCATATTGCAGGCGTTACAGAACACTCCTATAGATCCATGGCTAAGGTTGTTGGTGATGTGGTTCTTCAACTTCATGCTGGAAATCCTTTGACAGGAATTGAGTTAGTCAATTGA

Protein sequence

>MsG0380011516.01.T02

MWMSRSMLVTILHLLHVVLETPMGNLFGLKQNGSGANMTVLEGEAITLLDVIHFADVNRWDRVVSNIIYHLSLHSNFKVKFVRRQANIVAHTLARVACSWAKNEKRKCVVLVEENQIFVSTKIPTLTSLLHNNSGFQVPIISILVLCRKNLMERNGSMINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHPSIKVHLY*

>MsG0380011516.01.T01

MRRESVLYLLRRTKSLFQRKSQHSLLFSTTTQVSRKNLMERNGSMINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHPSIKVDVLPLEEIPKAIANYHVCVVKMMKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGATGNSVACAEMAIYLMLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATKRSWASYAQNTIELNRNDVDDLVDVKGSHEDIYDFATKADIVACCLNLNSETAGIVNNNFISSMKKGALLVNVARGPLLDYEAVVKNLESGHLGGLGTDVAWTEPFDPDDQILKFKNVIMTPHIAGVTEHSYRSMAKVVGDVVLQLHAGNPLTGIELVN*