AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007637.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007637.01.T01 MTR_7g094110 53.175 252 74 6 12 221 158 407 2.97e-65 209
MsG0280007637.01.T01 MTR_7g094110 96.842 95 3 0 12 106 158 252 3.86e-55 183
MsG0280007637.01.T01 MTR_7g094110 55.652 115 20 2 107 221 344 427 1.11e-26 107
MsG0280007637.01.T01 MTR_7g094450 84.615 104 16 0 3 106 147 250 6.83e-54 179
MsG0280007637.01.T01 MTR_7g094450 54.783 115 21 2 107 221 342 425 3.48e-26 105
MsG0280007637.01.T01 MTR_7g094430 84.043 94 15 0 5 98 45 138 1.11e-48 158
MsG0280007637.01.T01 MTR_2g020710 64.356 101 36 0 5 105 158 258 3.01e-39 139
MsG0280007637.01.T01 MTR_4g118610 66.337 101 34 0 5 105 161 261 3.41e-39 140
MsG0280007637.01.T01 MTR_2g020710 64.356 101 36 0 5 105 158 258 8.96e-39 139
MsG0280007637.01.T01 MTR_2g020710 64.356 101 36 0 5 105 158 258 9.47e-39 139
MsG0280007637.01.T01 MTR_4g118610 66.337 101 34 0 5 105 161 261 1.00e-38 139
MsG0280007637.01.T01 MTR_2g020710 64.356 101 36 0 5 105 69 169 1.16e-38 138
MsG0280007637.01.T01 MTR_2g020710 64.356 101 36 0 5 105 158 258 3.27e-38 138
MsG0280007637.01.T01 MTR_1g022315 35.563 284 115 9 5 221 59 341 3.03e-35 129
MsG0280007637.01.T01 MTR_1g022315 35.563 284 115 9 5 221 158 440 1.58e-34 128
MsG0280007637.01.T01 MTR_8g077310 32.862 283 123 8 5 221 59 340 7.47e-34 125
MsG0280007637.01.T01 MTR_5g020270 31.802 283 126 8 5 221 59 340 1.07e-33 124
MsG0280007637.01.T01 MTR_8g077310 32.862 283 123 8 5 221 156 437 3.74e-33 124
MsG0280007637.01.T01 MTR_5g020270 31.469 286 123 8 5 221 159 440 3.82e-33 124
MsG0280007637.01.T01 MTR_7g113960 57.843 102 43 0 5 106 136 237 7.35e-33 122
MsG0280007637.01.T01 MTR_7g113960 57.843 102 43 0 5 106 136 237 2.04e-32 122
MsG0280007637.01.T01 MTR_7g113970 53.922 102 47 0 5 106 171 272 4.36e-32 120
MsG0280007637.01.T01 MTR_8g077310 50.980 102 50 0 5 106 156 257 9.90e-32 119
MsG0280007637.01.T01 MTR_7g113970 53.922 102 47 0 5 106 171 272 1.10e-31 120
MsG0280007637.01.T01 MTR_5g020270 47.115 104 55 0 5 108 159 262 3.25e-30 116
MsG0280007637.01.T01 MTR_8g077300 47.115 104 55 0 5 108 148 251 5.82e-30 115
MsG0280007637.01.T01 MTR_7g094420 52.137 117 25 2 105 221 37 122 2.47e-26 99.4
MsG0280007637.01.T01 MTR_6g018790 38.298 94 53 1 7 95 218 311 1.57e-16 78.2
MsG0280007637.01.T01 MTR_7g118110 68.254 63 18 1 107 169 188 248 3.00e-16 76.6
MsG0280007637.01.T01 MTR_7g082270 36.170 94 55 1 7 95 178 271 4.15e-15 73.9
MsG0280007637.01.T01 MTR_7g082270 36.170 94 55 1 7 95 178 271 5.82e-15 73.6
MsG0280007637.01.T01 MTR_2g013310 35.714 112 64 2 8 111 165 276 1.05e-14 72.8
MsG0280007637.01.T01 MTR_2g013310 35.714 112 64 2 8 111 92 203 1.29e-14 72.4
MsG0280007637.01.T01 MTR_3g116060 40.196 102 53 3 7 101 115 215 3.26e-14 71.6
MsG0280007637.01.T01 MTR_4g069500 34.951 103 56 2 8 103 92 190 1.50e-13 69.3
MsG0280007637.01.T01 MTR_4g069500 34.951 103 56 2 8 103 142 240 1.61e-13 69.3
MsG0280007637.01.T01 MTR_7g446340 30.189 106 67 1 8 106 167 272 3.08e-13 68.6
MsG0280007637.01.T01 MTR_6g007340 30.189 106 67 1 8 106 167 272 3.08e-13 68.6
MsG0280007637.01.T01 MTR_5g024740 37.624 101 55 3 8 101 118 217 4.06e-13 68.2
MsG0280007637.01.T01 MTR_5g044910 36.634 101 56 3 8 101 118 217 1.69e-12 66.2
MsG0280007637.01.T01 MTR_7g005910 32.692 104 61 2 8 106 148 247 4.92e-12 65.1
MsG0280007637.01.T01 MTR_3g116240 30.172 116 73 2 8 116 140 254 1.37e-11 63.5
MsG0280007637.01.T01 MTR_1g116660 33.735 83 50 1 8 85 150 232 5.30e-11 62.0
MsG0280007637.01.T01 MTR_3g074380 34.286 105 60 3 8 105 157 259 5.79e-11 61.6
MsG0280007637.01.T01 MTR_5g082540 32.174 115 64 2 6 106 154 268 6.22e-11 61.6
MsG0280007637.01.T01 MTR_3g074410 34.951 103 62 2 8 105 156 258 7.23e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007637.01.T01 AT2G48020 71.154 104 30 0 3 106 135 238 5.29e-45 153
MsG0280007637.01.T01 AT2G48020 71.154 104 30 0 3 106 135 238 8.72e-45 154
MsG0280007637.01.T01 AT2G48020 71.154 104 30 0 3 106 135 238 3.42e-44 154
MsG0280007637.01.T01 AT2G48020 71.154 104 30 0 3 106 135 238 3.42e-44 154
MsG0280007637.01.T01 AT5G18840 66.038 106 36 0 3 108 151 256 7.46e-41 145
MsG0280007637.01.T01 AT1G19450 33.216 283 122 7 5 221 158 439 6.04e-36 132
MsG0280007637.01.T01 AT1G54730 32.819 259 133 2 3 221 139 396 8.02e-35 128
MsG0280007637.01.T01 AT1G54730 32.819 259 133 2 3 221 139 396 1.19e-34 128
MsG0280007637.01.T01 AT3G05150 33.813 278 123 5 5 221 144 421 1.23e-33 125
MsG0280007637.01.T01 AT3G05150 33.813 278 123 5 5 221 144 421 1.23e-33 125
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 1.65e-33 123
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 1.65e-33 123
MsG0280007637.01.T01 AT3G05150 33.813 278 123 5 5 221 144 421 1.70e-33 125
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 1.91e-33 124
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 1.99e-33 123
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 3.09e-33 124
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 3.09e-33 124
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 5.18e-33 123
MsG0280007637.01.T01 AT1G54730 53.846 104 48 0 3 106 139 242 8.11e-33 123
MsG0280007637.01.T01 AT3G05400 55.769 104 46 0 5 108 115 218 2.22e-31 119
MsG0280007637.01.T01 AT3G05400 55.769 104 46 0 5 108 135 238 2.82e-31 119
MsG0280007637.01.T01 AT3G05165 53.398 103 48 0 5 107 139 241 8.26e-31 118
MsG0280007637.01.T01 AT3G05165 53.398 103 48 0 5 107 139 241 8.26e-31 118
MsG0280007637.01.T01 AT3G05165 53.398 103 48 0 5 107 139 241 9.51e-31 118
MsG0280007637.01.T01 AT3G05165 53.398 103 48 0 5 107 139 241 9.51e-31 118
MsG0280007637.01.T01 AT3G05165 53.398 103 48 0 5 107 139 241 9.51e-31 118
MsG0280007637.01.T01 AT3G05165 53.398 103 48 0 5 107 139 241 1.00e-30 118
MsG0280007637.01.T01 AT3G05155 49.038 104 53 0 5 108 136 239 1.27e-30 115
MsG0280007637.01.T01 AT1G75220 48.077 104 54 0 5 108 157 260 1.43e-30 117
MsG0280007637.01.T01 AT3G20460 47.059 102 54 0 5 106 162 263 5.95e-30 115
MsG0280007637.01.T01 AT3G05155 49.038 104 53 0 5 108 136 239 7.84e-30 115
MsG0280007637.01.T01 AT3G05160 50.485 103 51 0 5 107 81 183 8.23e-30 114
MsG0280007637.01.T01 AT3G05160 50.485 103 51 0 5 107 81 183 8.23e-30 114
MsG0280007637.01.T01 AT1G08930 50.962 104 51 0 3 106 165 268 8.82e-30 115
MsG0280007637.01.T01 AT1G08930 50.962 104 51 0 3 106 165 268 8.82e-30 115
MsG0280007637.01.T01 AT3G05160 50.485 103 51 0 5 107 130 232 1.13e-29 115
MsG0280007637.01.T01 AT1G08920 53.922 102 47 0 5 106 141 242 2.37e-29 114
MsG0280007637.01.T01 AT1G08920 53.922 102 47 0 5 106 141 242 3.00e-29 114
MsG0280007637.01.T01 AT1G08920 53.922 102 47 0 5 106 141 242 3.63e-29 113
MsG0280007637.01.T01 AT5G27350 49.515 103 52 0 5 107 140 242 6.80e-29 113
MsG0280007637.01.T01 AT5G27360 47.573 103 54 0 5 107 40 142 1.22e-27 108
MsG0280007637.01.T01 AT5G27360 47.573 103 54 0 5 107 40 142 1.22e-27 108
MsG0280007637.01.T01 AT5G27360 47.573 103 54 0 5 107 144 246 1.52e-27 108
MsG0280007637.01.T01 AT4G04760 50.000 102 51 0 4 105 80 181 2.34e-27 108
MsG0280007637.01.T01 AT5G27360 47.573 103 54 0 5 107 192 294 2.39e-27 108
MsG0280007637.01.T01 AT5G27360 47.573 103 54 0 5 107 144 246 2.85e-27 108
MsG0280007637.01.T01 AT4G04760 50.000 102 51 0 4 105 139 240 3.30e-27 108
MsG0280007637.01.T01 AT4G04760 50.000 102 51 0 4 105 139 240 3.34e-27 108
MsG0280007637.01.T01 AT4G04750 48.515 101 52 0 5 105 145 245 4.33e-26 105
MsG0280007637.01.T01 AT4G04750 48.515 101 52 0 5 105 145 245 4.33e-26 105
MsG0280007637.01.T01 AT4G04750 48.515 101 52 0 5 105 189 289 4.48e-26 105
MsG0280007637.01.T01 AT1G08890 46.078 102 55 0 5 106 136 237 8.79e-26 104
MsG0280007637.01.T01 AT1G08900 45.098 102 56 0 5 106 134 235 1.37e-25 103
MsG0280007637.01.T01 AT1G08900 45.098 102 56 0 5 106 92 193 1.91e-25 102
MsG0280007637.01.T01 AT1G08900 45.098 102 56 0 5 106 126 227 2.09e-25 103
MsG0280007637.01.T01 AT1G08900 45.098 102 56 0 5 106 134 235 2.19e-25 103
MsG0280007637.01.T01 AT1G08900 45.098 102 56 0 5 106 134 235 2.19e-25 103
MsG0280007637.01.T01 AT5G16150 35.455 110 65 2 7 111 218 326 3.70e-17 80.1
MsG0280007637.01.T01 AT5G16150 35.455 110 65 2 7 111 218 326 3.70e-17 80.1
MsG0280007637.01.T01 AT5G16150 35.455 110 65 2 7 111 218 326 3.70e-17 80.1
MsG0280007637.01.T01 AT1G20840 38.235 102 55 3 7 101 115 215 2.11e-14 72.0
MsG0280007637.01.T01 AT1G20840 38.235 102 55 3 7 101 115 215 2.11e-14 72.0
MsG0280007637.01.T01 AT3G51490 40.196 102 53 4 7 101 67 167 4.86e-14 70.9
MsG0280007637.01.T01 AT3G51490 40.196 102 53 4 7 101 117 217 4.94e-14 70.9
MsG0280007637.01.T01 AT3G51490 40.196 102 53 4 7 101 117 217 5.05e-14 70.9
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.60e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.60e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.60e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.63e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.63e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.63e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.63e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.63e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.63e-12 64.3
MsG0280007637.01.T01 AT4G35300 34.307 137 78 5 7 132 117 252 8.63e-12 64.3
MsG0280007637.01.T01 AT2G43330 31.731 104 62 3 8 106 146 245 1.49e-11 63.5
MsG0280007637.01.T01 AT1G30220 30.189 106 68 2 8 108 143 247 2.64e-11 62.8
MsG0280007637.01.T01 AT2G20780 29.091 110 71 1 8 110 167 276 4.57e-11 62.0
MsG0280007637.01.T01 AT2G20780 29.091 110 71 1 8 110 109 218 4.66e-11 62.0
MsG0280007637.01.T01 AT1G07340 36.190 105 61 3 7 106 153 256 9.06e-11 61.2
MsG0280007637.01.T01 AT1G05030 31.429 105 66 2 7 106 140 243 9.55e-11 61.2

Find 58 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCACTGCTGTGTTGCTTC+TGG 0.130660 2:-18381357 MsG0280007637.01.T01:CDS
CTTGGTTTCAATTAGGTATC+TGG 0.196736 2:-18380179 MsG0280007637.01.T01:intron
CTATATGAGGTTGAGGTAAA+TGG 0.235346 2:-18381808 MsG0280007637.01.T01:five_prime_UTR
AGGGCACCTCGGAGTTCTTT+TGG 0.268637 2:+18381706 None:intergenic
TTAGATGTGTTACATATATA+AGG 0.279239 2:-18381755 MsG0280007637.01.T01:exon
CCCACTGCTGTGTTGCTTCT+GGG 0.289747 2:-18381356 MsG0280007637.01.T01:CDS
GCAACACAGCAGTGGGAATA+AGG 0.301338 2:+18381363 None:intergenic
GTATCAGTGTCATTCATAAT+TGG 0.311203 2:-18381549 MsG0280007637.01.T01:CDS
CTCTTTCATTTGCTGATATT+AGG 0.349679 2:-18379886 MsG0280007637.01.T01:CDS
TAATTGGAACAGTACTTTCA+TGG 0.363139 2:-18381533 MsG0280007637.01.T01:CDS
GTCCCAGCACTTGCCGTAAC+CGG 0.369576 2:-18379997 MsG0280007637.01.T01:CDS
TTCAATTAGGTATCTGGATC+AGG 0.372298 2:-18380173 MsG0280007637.01.T01:intron
TGAAGAGGCAGAAGAAATTC+AGG 0.379612 2:-18381126 MsG0280007637.01.T01:intron
ACTTGCCGTAACCGGCATAT+TGG 0.383664 2:-18379989 MsG0280007637.01.T01:CDS
ATACCTGATTTAAGGTAGTC+AGG 0.404425 2:+18381686 None:intergenic
TTATTACTTACCAGCCATCT+AGG 0.415487 2:+18381311 None:intergenic
TGGAGGGCTTTAGCTATAAT+CGG 0.425528 2:-18381513 MsG0280007637.01.T01:intron
TGCCCTGACTACCTTAAATC+AGG 0.427867 2:-18381689 MsG0280007637.01.T01:intron
ATGCCGGTTACGGCAAGTGC+TGG 0.431492 2:+18379994 None:intergenic
TCATTCCAGAGTCTCCTAGA+TGG 0.435503 2:-18381325 MsG0280007637.01.T01:CDS
TCTGGATCAGGATTGGTTGC+AGG 0.437259 2:-18380161 MsG0280007637.01.T01:CDS
GCATCGCAACATTAGTGAAC+TGG 0.445739 2:-18379477 MsG0280007637.01.T01:CDS
GTCAATATCAAGGGGCAGGC+AGG 0.458597 2:-18379502 MsG0280007637.01.T01:CDS
GCAACATTAGTGAACTGGTT+TGG 0.470036 2:-18379472 MsG0280007637.01.T01:CDS
CCATGCCAATATGCCGGTTA+CGG 0.476110 2:+18379984 None:intergenic
GATATTTCCAGTCAATATCA+AGG 0.493302 2:-18379512 MsG0280007637.01.T01:intron
AATGAAAGAGCAGTGTTACA+TGG 0.515101 2:+18379899 None:intergenic
TTAGGTATCTGGATCAGGAT+TGG 0.517795 2:-18380168 MsG0280007637.01.T01:intron
TCCAGAGTCTCCTAGATGGC+TGG 0.523060 2:-18381321 MsG0280007637.01.T01:intron
TGCCGGTTACGGCAAGTGCT+GGG 0.527544 2:+18379995 None:intergenic
TAGGAATGGGAGCAATTCCA+TGG 0.529632 2:-18379842 MsG0280007637.01.T01:CDS
TCCAGTCAATATCAAGGGGC+AGG 0.530357 2:-18379506 MsG0280007637.01.T01:intron
TGGAACAGTACTTTCATGGA+GGG 0.532101 2:-18381529 MsG0280007637.01.T01:CDS
ACCAGCCATCTAGGAGACTC+TGG 0.543206 2:+18381320 None:intergenic
TGCTGATATTAGGTCTACAT+AGG 0.553729 2:-18379876 MsG0280007637.01.T01:CDS
TAGTGAACTGGTTTGGTGCA+TGG 0.558886 2:-18379465 MsG0280007637.01.T01:CDS
ACCTCGGACATCACAACCCA+TGG 0.560460 2:+18379825 None:intergenic
TACCTGATTTAAGGTAGTCA+GGG 0.563340 2:+18381687 None:intergenic
ACAGGTTCATGATGTGGCTG+TGG 0.570506 2:-18380025 MsG0280007637.01.T01:intron
AGCAGTTGCATTCTATCTCA+AGG 0.573615 2:-18380126 MsG0280007637.01.T01:intron
AGATGCTGATATATCTGAAG+AGG 0.576120 2:-18381141 MsG0280007637.01.T01:CDS
ACCCAGAAGCAACACAGCAG+TGG 0.576369 2:+18381355 None:intergenic
CCCAGAAGCAACACAGCAGT+GGG 0.578353 2:+18381356 None:intergenic
GCAATTTCTGCTACGAACAC+AGG 0.587269 2:+18381730 None:intergenic
ATGTAGCCATGCCAATATGC+CGG 0.596353 2:+18379978 None:intergenic
ATATTTCCAGTCAATATCAA+GGG 0.605750 2:-18379511 MsG0280007637.01.T01:intron
CAGGTTCATGATGTGGCTGT+GGG 0.612693 2:-18380024 MsG0280007637.01.T01:CDS
CCGTAACCGGCATATTGGCA+TGG 0.616305 2:-18379984 MsG0280007637.01.T01:CDS
TAATGAATGCAGGCAAAGCG+AGG 0.623838 2:-18381209 MsG0280007637.01.T01:intron
GCAGCATTACAAATACTTCG+CGG 0.650248 2:-18381167 MsG0280007637.01.T01:CDS
TTGGAACAGTACTTTCATGG+AGG 0.660408 2:-18381530 MsG0280007637.01.T01:CDS
TGAGTAACAGGTTCATGATG+TGG 0.664870 2:-18380031 MsG0280007637.01.T01:intron
TATTTCCAGTCAATATCAAG+GGG 0.665222 2:-18379510 MsG0280007637.01.T01:intron
TTAAGGTAGTCAGGGCACCT+CGG 0.669152 2:+18381695 None:intergenic
AGGAATGGGAGCAATTCCAT+GGG 0.675398 2:-18379841 MsG0280007637.01.T01:CDS
ACACATCTAAATAAGAACTG+TGG 0.694709 2:+18381768 None:intergenic
TCCATGGGTTGTGATGTCCG+AGG 0.731376 2:-18379826 MsG0280007637.01.T01:intron
ATTGCGCCAAAAGAACTCCG+AGG 0.763517 2:-18381712 MsG0280007637.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTACATAAATATT+AGG + Chr2:18381207-18381226 None:intergenic 10.0%
!! AAATAAAAATAAGTTGTTTG+TGG + Chr2:18381022-18381041 None:intergenic 15.0%
!! ATTAACCAATAATTAATTCT+TGG - Chr2:18380889-18380908 MsG0280007637.01.T01:intron 15.0%
!!! ATTTTCCAAGAATTAATTAT+TGG + Chr2:18380897-18380916 None:intergenic 15.0%
!!! TTTATTTTGTTTTGGTTTAT+TGG - Chr2:18380792-18380811 MsG0280007637.01.T01:intron 15.0%
!! AATAAAAATCATGATTGAGT+TGG + Chr2:18380942-18380961 None:intergenic 20.0%
!! ACAAAAATATACCTGATTTA+AGG + Chr2:18379592-18379611 None:intergenic 20.0%
!! ATTTAAAAATAAGAACCTGA+AGG + Chr2:18380871-18380890 None:intergenic 20.0%
!! TTAGATGTGTTACATATATA+AGG - Chr2:18379512-18379531 MsG0280007637.01.T01:intron 20.0%
!! TTGATATTAAAAACTGAAAG+TGG + Chr2:18381485-18381504 None:intergenic 20.0%
!!! ATACTCTTATTGTTATTTCT+TGG - Chr2:18381070-18381089 MsG0280007637.01.T01:intron 20.0%
!!! CTCAGATTTTTATTTTGTTT+TGG - Chr2:18380784-18380803 MsG0280007637.01.T01:intron 20.0%
! AATAGAACAAATATGAGAAG+TGG + Chr2:18380482-18380501 None:intergenic 25.0%
! ATATTTCCAGTCAATATCAA+GGG - Chr2:18381756-18381775 MsG0280007637.01.T01:exon 25.0%
! ATCTACTCATGAAGAAAAAT+AGG + Chr2:18380545-18380564 None:intergenic 25.0%
! CAAATATAATGCAATTAAGC+TGG - Chr2:18380236-18380255 MsG0280007637.01.T01:intron 25.0%
! CAGCTTAATTGCATTATATT+TGG + Chr2:18380238-18380257 None:intergenic 25.0%
!! AGGAAGATGAAAATTTTGAA+TGG + Chr2:18380525-18380544 None:intergenic 25.0%
!! ATTTTTCTTCATGAGTAGAT+TGG - Chr2:18380545-18380564 MsG0280007637.01.T01:intron 25.0%
!! TTTTTCTTTTTCTTTGACCT+GGG - Chr2:18381615-18381634 MsG0280007637.01.T01:intron 25.0%
!!! GTTATTTCTTGGTTTCAATT+AGG - Chr2:18381081-18381100 MsG0280007637.01.T01:intron 25.0%
!!! TATTGGTGTATTTTTGTCAT+AGG - Chr2:18380809-18380828 MsG0280007637.01.T01:intron 25.0%
AAAAGAAAAACAGTTCCAGT+CGG + Chr2:18381605-18381624 None:intergenic 30.0%
AAATAAGTGTTTGCAATTGC+AGG - Chr2:18379881-18379900 MsG0280007637.01.T01:CDS 30.0%
AAATGAACTGATATTCAGAG+TGG + Chr2:18380381-18380400 None:intergenic 30.0%
AAGCTGTAAAGTTCTTAGTT+GGG + Chr2:18381172-18381191 None:intergenic 30.0%
ACACATCTAAATAAGAACTG+TGG + Chr2:18379502-18379521 None:intergenic 30.0%
ACTAGTTATATAATCCTGTG+TGG + Chr2:18380276-18380295 None:intergenic 30.0%
AGAGGTGGAAAATAAAGTAT+TGG - Chr2:18380435-18380454 MsG0280007637.01.T01:intron 30.0%
ATTTAGATGAAAACATGCAG+TGG - Chr2:18379995-18380014 MsG0280007637.01.T01:CDS 30.0%
GATATTTCCAGTCAATATCA+AGG - Chr2:18381755-18381774 MsG0280007637.01.T01:exon 30.0%
GTGTCCTCTTAGTAAAAATA+CGG - Chr2:18381698-18381717 MsG0280007637.01.T01:CDS 30.0%
TAAAAACTGAAAGTGGAGAA+AGG + Chr2:18381478-18381497 None:intergenic 30.0%
TAATTGGAACAGTACTTTCA+TGG - Chr2:18379734-18379753 MsG0280007637.01.T01:intron 30.0%
TATAATATACGCTATCCTTC+AGG - Chr2:18380853-18380872 MsG0280007637.01.T01:intron 30.0%
TATTTCCAGTCAATATCAAG+GGG - Chr2:18381757-18381776 MsG0280007637.01.T01:exon 30.0%
TCATATGATCTTCTTCTTAG+TGG + Chr2:18379810-18379829 None:intergenic 30.0%
! AAGTATGATGGTGTTAAACT+TGG + Chr2:18380684-18380703 None:intergenic 30.0%
! ATTTTCTTCAAGAATGTGTG+TGG - Chr2:18380397-18380416 MsG0280007637.01.T01:intron 30.0%
! CTCTTTCATTTGCTGATATT+AGG - Chr2:18381381-18381400 MsG0280007637.01.T01:intron 30.0%
! GTATCAGTGTCATTCATAAT+TGG - Chr2:18379718-18379737 MsG0280007637.01.T01:intron 30.0%
! GTTTTTCTTTTTCTTTGACC+TGG - Chr2:18381614-18381633 MsG0280007637.01.T01:intron 30.0%
! TACATAGGATCGTTTTCAAT+AGG - Chr2:18381406-18381425 MsG0280007637.01.T01:intron 30.0%
! TGATATGCAAGAAAGTATGA+TGG + Chr2:18380696-18380715 None:intergenic 30.0%
! TTCATTATTTGGTTGGTACT+TGG + Chr2:18380045-18380064 None:intergenic 30.0%
! TTTTCTTTTTCTTTGACCTG+GGG - Chr2:18381616-18381635 MsG0280007637.01.T01:intron 30.0%
!! TAAGAGTATCATACATGAAG+CGG + Chr2:18381059-18381078 None:intergenic 30.0%
!! TAGTGTATTTTTGATCTAGC+AGG - Chr2:18380628-18380647 MsG0280007637.01.T01:intron 30.0%
!! TATGCCGTATTTTTACTAAG+AGG + Chr2:18381705-18381724 None:intergenic 30.0%
!!! TTAAGTGCAACTCTTGTTTT+TGG + Chr2:18381562-18381581 None:intergenic 30.0%
AAAGAAAAACAGTTCCAGTC+GGG + Chr2:18381604-18381623 None:intergenic 35.0%
AATAAGTTGTTTGTGGCTTC+CGG + Chr2:18381015-18381034 None:intergenic 35.0%
AATGAAAGAGCAGTGTTACA+TGG + Chr2:18381371-18381390 None:intergenic 35.0%
ACCAACCAAATAATGAATGC+AGG - Chr2:18380048-18380067 MsG0280007637.01.T01:intron 35.0%
AGATGCTGATATATCTGAAG+AGG - Chr2:18380126-18380145 MsG0280007637.01.T01:intron 35.0%
ATTTCACAGATTGTGATCAC+AGG - Chr2:18380959-18380978 MsG0280007637.01.T01:intron 35.0%
CTATATGAGGTTGAGGTAAA+TGG - Chr2:18379459-18379478 MsG0280007637.01.T01:CDS 35.0%
CTGGAAATATCTGCAACATA+AGG + Chr2:18381746-18381765 None:intergenic 35.0%
CTTGGTTTCAATTAGGTATC+TGG - Chr2:18381088-18381107 MsG0280007637.01.T01:intron 35.0%
CTTTGCCTGCATTCATTATT+TGG + Chr2:18380056-18380075 None:intergenic 35.0%
GAAGCTGTAAAGTTCTTAGT+TGG + Chr2:18381173-18381192 None:intergenic 35.0%
GTCTTTATTATTGTGCCTGA+AGG + Chr2:18380209-18380228 None:intergenic 35.0%
TAAATCAACTTCGAATTCGC+CGG - Chr2:18381666-18381685 MsG0280007637.01.T01:intron 35.0%
TGCTGATATTAGGTCTACAT+AGG - Chr2:18381391-18381410 MsG0280007637.01.T01:intron 35.0%
TTATTACTTACCAGCCATCT+AGG + Chr2:18379959-18379978 None:intergenic 35.0%
TTCAATTAGGTATCTGGATC+AGG - Chr2:18381094-18381113 MsG0280007637.01.T01:intron 35.0%
TTCATGAGTAGATTGGAGTA+GGG - Chr2:18380552-18380571 MsG0280007637.01.T01:intron 35.0%
! AAGAGGACACATTTTGTAAC+CGG + Chr2:18381688-18381707 None:intergenic 35.0%
! AGGATCGTTTTCAATAGGAA+TGG - Chr2:18381411-18381430 MsG0280007637.01.T01:intron 35.0%
! ATACCTGATTTAAGGTAGTC+AGG + Chr2:18379584-18379603 None:intergenic 35.0%
! GGATCGTTTTCAATAGGAAT+GGG - Chr2:18381412-18381431 MsG0280007637.01.T01:intron 35.0%
! TACCTGATTTAAGGTAGTCA+GGG + Chr2:18379583-18379602 None:intergenic 35.0%
! TTATGGTTTGCCAGCAATTA+GGG - Chr2:18380576-18380595 MsG0280007637.01.T01:intron 35.0%
AACTGAAAGTGGAGAAAGGA+TGG + Chr2:18381474-18381493 None:intergenic 40.0%
AAGAAAAACAGTTCCAGTCG+GGG + Chr2:18381603-18381622 None:intergenic 40.0%
ACTGAAAGTGGAGAAAGGAT+GGG + Chr2:18381473-18381492 None:intergenic 40.0%
AGCAGTTGCATTCTATCTCA+AGG - Chr2:18381141-18381160 MsG0280007637.01.T01:CDS 40.0%
AGGTAACTGTGTGTTAGTGT+TGG - Chr2:18380161-18380180 MsG0280007637.01.T01:CDS 40.0%
ATGAACCTGTTACTCACACA+AGG + Chr2:18381232-18381251 None:intergenic 40.0%
CTTCATGAGTAGATTGGAGT+AGG - Chr2:18380551-18380570 MsG0280007637.01.T01:intron 40.0%
GATATCCTTGTGTGAGTAAC+AGG - Chr2:18381224-18381243 MsG0280007637.01.T01:intron 40.0%
GCAACATTAGTGAACTGGTT+TGG - Chr2:18381795-18381814 MsG0280007637.01.T01:five_prime_UTR 40.0%
GCAGCATTACAAATACTTCG+CGG - Chr2:18380100-18380119 MsG0280007637.01.T01:intron 40.0%
GCCTGCATTCATTATTTGGT+TGG + Chr2:18380052-18380071 None:intergenic 40.0%
TATTAAGTGACCTTGCCTTC+AGG - Chr2:18380191-18380210 MsG0280007637.01.T01:intron 40.0%
TATTATTGTGCCTGAAGGCA+AGG + Chr2:18380204-18380223 None:intergenic 40.0%
TGAAACAAATCCAGCACCTT+CGG + Chr2:18380317-18380336 None:intergenic 40.0%
TGAAGAGGCAGAAGAAATTC+AGG - Chr2:18380141-18380160 MsG0280007637.01.T01:CDS 40.0%
TGAGTAACAGGTTCATGATG+TGG - Chr2:18381236-18381255 MsG0280007637.01.T01:intron 40.0%
TGGAACAGTACTTTCATGGA+GGG - Chr2:18379738-18379757 MsG0280007637.01.T01:intron 40.0%
TTAGGTATCTGGATCAGGAT+TGG - Chr2:18381099-18381118 MsG0280007637.01.T01:intron 40.0%
TTCTTCAAGAATGTGTGTGG+TGG - Chr2:18380400-18380419 MsG0280007637.01.T01:intron 40.0%
TTGGAACAGTACTTTCATGG+AGG - Chr2:18379737-18379756 MsG0280007637.01.T01:intron 40.0%
! AGGACGCACAAAAGATTTTG+TGG - Chr2:18380078-18380097 MsG0280007637.01.T01:intron 40.0%
! CTTATGGTTTGCCAGCAATT+AGG - Chr2:18380575-18380594 MsG0280007637.01.T01:intron 40.0%
! TATGGTTTGCCAGCAATTAG+GGG - Chr2:18380577-18380596 MsG0280007637.01.T01:intron 40.0%
! TGGAGGGCTTTAGCTATAAT+CGG - Chr2:18379754-18379773 MsG0280007637.01.T01:intron 40.0%
!! CATGATTGAGTTGGATTCGA+GGG + Chr2:18380933-18380952 None:intergenic 40.0%
!! TCATGATTGAGTTGGATTCG+AGG + Chr2:18380934-18380953 None:intergenic 40.0%
AGGAATGGGAGCAATTCCAT+GGG - Chr2:18381426-18381445 MsG0280007637.01.T01:intron 45.0%
ATAGGATTTCCTTCTGCGAC+GGG - Chr2:18380827-18380846 MsG0280007637.01.T01:intron 45.0%
ATGTAGCCATGCCAATATGC+CGG + Chr2:18381292-18381311 None:intergenic 45.0%
CAGATTGTGATCACAGGTGT+TGG - Chr2:18380965-18380984 MsG0280007637.01.T01:intron 45.0%
CAGCAATTAGGGGGAATCAA+TGG - Chr2:18380587-18380606 MsG0280007637.01.T01:intron 45.0%
CATAGGATTTCCTTCTGCGA+CGG - Chr2:18380826-18380845 MsG0280007637.01.T01:intron 45.0%
CTGAAAGTGGAGAAAGGATG+GGG + Chr2:18381472-18381491 None:intergenic 45.0%
GCAATTTCTGCTACGAACAC+AGG + Chr2:18379540-18379559 None:intergenic 45.0%
GCATCGCAACATTAGTGAAC+TGG - Chr2:18381790-18381809 MsG0280007637.01.T01:five_prime_UTR 45.0%
GTAGATTGGAGTAGGGCTTA+TGG - Chr2:18380559-18380578 MsG0280007637.01.T01:intron 45.0%
TAATGAATGCAGGCAAAGCG+AGG - Chr2:18380058-18380077 MsG0280007637.01.T01:intron 45.0%
TAGGAATGGGAGCAATTCCA+TGG - Chr2:18381425-18381444 MsG0280007637.01.T01:intron 45.0%
TCATTCCAGAGTCTCCTAGA+TGG - Chr2:18379942-18379961 MsG0280007637.01.T01:CDS 45.0%
TGCATAAATAGATCCTCCCC+AGG + Chr2:18381635-18381654 None:intergenic 45.0%
TGCCCTGACTACCTTAAATC+AGG - Chr2:18379578-18379597 MsG0280007637.01.T01:intron 45.0%
! ATGGTTTGCCAGCAATTAGG+GGG - Chr2:18380578-18380597 MsG0280007637.01.T01:intron 45.0%
! TCTTTTTCTTTGACCTGGGG+AGG - Chr2:18381619-18381638 MsG0280007637.01.T01:intron 45.0%
!! AATGTGTGTGGTGGACTACT+AGG - Chr2:18380409-18380428 MsG0280007637.01.T01:intron 45.0%
!! CATTGATTCCCCCTAATTGC+TGG + Chr2:18380589-18380608 None:intergenic 45.0%
!! TAGTGAACTGGTTTGGTGCA+TGG - Chr2:18381802-18381821 MsG0280007637.01.T01:five_prime_UTR 45.0%
ACAGGTTCATGATGTGGCTG+TGG - Chr2:18381242-18381261 MsG0280007637.01.T01:intron 50.0%
ACTTGCCGTAACCGGCATAT+TGG - Chr2:18381278-18381297 MsG0280007637.01.T01:intron 50.0%
AGAACAGCTCGCAAAACCGA+AGG - Chr2:18380298-18380317 MsG0280007637.01.T01:intron 50.0%
AGCAAATGTTGATCCCCGAC+TGG - Chr2:18381587-18381606 MsG0280007637.01.T01:intron 50.0%
ATTATACTCCCCGTCGCAGA+AGG + Chr2:18380839-18380858 None:intergenic 50.0%
ATTGCGCCAAAAGAACTCCG+AGG - Chr2:18379555-18379574 MsG0280007637.01.T01:intron 50.0%
CAGGTTCATGATGTGGCTGT+GGG - Chr2:18381243-18381262 MsG0280007637.01.T01:intron 50.0%
GCAACACAGCAGTGGGAATA+AGG + Chr2:18379907-18379926 None:intergenic 50.0%
TAGGATTTCCTTCTGCGACG+GGG - Chr2:18380828-18380847 MsG0280007637.01.T01:intron 50.0%
TCCAGTCAATATCAAGGGGC+AGG - Chr2:18381761-18381780 MsG0280007637.01.T01:exon 50.0%
TGTATCTGTCACTGCCACAC+AGG - Chr2:18380259-18380278 MsG0280007637.01.T01:intron 50.0%
! CCATGCCAATATGCCGGTTA+CGG + Chr2:18381286-18381305 None:intergenic 50.0%
! TGGACTACTAGGTTGAGAGG+TGG - Chr2:18380420-18380439 MsG0280007637.01.T01:intron 50.0%
! TTAAGGTAGTCAGGGCACCT+CGG + Chr2:18379575-18379594 None:intergenic 50.0%
!! GAAAGGATGGGGAAGTACCT+CGG + Chr2:18381461-18381480 None:intergenic 50.0%
!! TCTGGATCAGGATTGGTTGC+AGG - Chr2:18381106-18381125 MsG0280007637.01.T01:intron 50.0%
!! TGGTGGACTACTAGGTTGAG+AGG - Chr2:18380417-18380436 MsG0280007637.01.T01:intron 50.0%
ACCAGCCATCTAGGAGACTC+TGG + Chr2:18379950-18379969 None:intergenic 55.0%
ACCCAGAAGCAACACAGCAG+TGG + Chr2:18379915-18379934 None:intergenic 55.0%
ACCTCGGACATCACAACCCA+TGG + Chr2:18381445-18381464 None:intergenic 55.0%
CCCAGAAGCAACACAGCAGT+GGG + Chr2:18379914-18379933 None:intergenic 55.0%
CCCTCATAGATAGAGCAGGC+CGG - Chr2:18380993-18381012 MsG0280007637.01.T01:intron 55.0%
CCGGCCTGCTCTATCTATGA+GGG + Chr2:18380996-18381015 None:intergenic 55.0%
CCGTAACCGGCATATTGGCA+TGG - Chr2:18381283-18381302 MsG0280007637.01.T01:intron 55.0%
GCAGCCCTCATAGATAGAGC+AGG - Chr2:18380989-18381008 MsG0280007637.01.T01:intron 55.0%
GCCTGCCCCTTGATATTGAC+TGG + Chr2:18381765-18381784 None:intergenic 55.0%
GTCAATATCAAGGGGCAGGC+AGG - Chr2:18381765-18381784 MsG0280007637.01.T01:exon 55.0%
TCCAGAGTCTCCTAGATGGC+TGG - Chr2:18379946-18379965 MsG0280007637.01.T01:CDS 55.0%
TCCGGCCTGCTCTATCTATG+AGG + Chr2:18380997-18381016 None:intergenic 55.0%
! TCCATGGGTTGTGATGTCCG+AGG - Chr2:18381441-18381460 MsG0280007637.01.T01:intron 55.0%
!! AGGGCACCTCGGAGTTCTTT+TGG + Chr2:18379564-18379583 None:intergenic 55.0%
!! CCCACTGCTGTGTTGCTTCT+GGG - Chr2:18379911-18379930 MsG0280007637.01.T01:CDS 55.0%
!! TCCCACTGCTGTGTTGCTTC+TGG - Chr2:18379910-18379929 MsG0280007637.01.T01:CDS 55.0%
GTCCCAGCACTTGCCGTAAC+CGG - Chr2:18381270-18381289 MsG0280007637.01.T01:intron 60.0%
! ATGCCGGTTACGGCAAGTGC+TGG + Chr2:18381276-18381295 None:intergenic 60.0%
! GCTCGCAAAACCGAAGGTGC+TGG - Chr2:18380304-18380323 MsG0280007637.01.T01:intron 60.0%
! TGCCGGTTACGGCAAGTGCT+GGG + Chr2:18381275-18381294 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 18379453 18381836 18379453 ID=MsG0280007637.01;Name=MsG0280007637.01
Chr2 mRNA 18379453 18381836 18379453 ID=MsG0280007637.01.T01;Parent=MsG0280007637.01;Name=MsG0280007637.01.T01;_AED=0.38;_eAED=0.38;_QI=63|0.66|0.57|1|1|1|7|0|221
Chr2 exon 18379453 18379523 18379453 ID=MsG0280007637.01.T01:exon:11091;Parent=MsG0280007637.01.T01
Chr2 exon 18379827 18380043 18379827 ID=MsG0280007637.01.T01:exon:11090;Parent=MsG0280007637.01.T01
Chr2 exon 18380127 18380186 18380127 ID=MsG0280007637.01.T01:exon:11089;Parent=MsG0280007637.01.T01
Chr2 exon 18381127 18381219 18381127 ID=MsG0280007637.01.T01:exon:11088;Parent=MsG0280007637.01.T01
Chr2 exon 18381322 18381386 18381322 ID=MsG0280007637.01.T01:exon:11087;Parent=MsG0280007637.01.T01
Chr2 exon 18381514 18381589 18381514 ID=MsG0280007637.01.T01:exon:11086;Parent=MsG0280007637.01.T01
Chr2 exon 18381690 18381836 18381690 ID=MsG0280007637.01.T01:exon:11085;Parent=MsG0280007637.01.T01
Chr2 five_prime_UTR 18381774 18381836 18381774 ID=MsG0280007637.01.T01:five_prime_utr;Parent=MsG0280007637.01.T01
Chr2 CDS 18381690 18381773 18381690 ID=MsG0280007637.01.T01:cds;Parent=MsG0280007637.01.T01
Chr2 CDS 18381514 18381589 18381514 ID=MsG0280007637.01.T01:cds;Parent=MsG0280007637.01.T01
Chr2 CDS 18381322 18381386 18381322 ID=MsG0280007637.01.T01:cds;Parent=MsG0280007637.01.T01
Chr2 CDS 18381127 18381219 18381127 ID=MsG0280007637.01.T01:cds;Parent=MsG0280007637.01.T01
Chr2 CDS 18380127 18380186 18380127 ID=MsG0280007637.01.T01:cds;Parent=MsG0280007637.01.T01
Chr2 CDS 18379827 18380043 18379827 ID=MsG0280007637.01.T01:cds;Parent=MsG0280007637.01.T01
Chr2 CDS 18379453 18379523 18379453 ID=MsG0280007637.01.T01:cds;Parent=MsG0280007637.01.T01
Gene Sequence

>MsG0280007637.01.T01

ATGTGTTACATATATAAGGTTCCTGTGTTCGTAGCAGAAATTGCGCCAAAAGAACTCCGAGGTGCCCTGACTACCTTAAATCAGTTCATGATTGTTACTGCTGTATCAGTGTCATTCATAATTGGAACAGTACTTTCATGGAGGGCTTTAGCTATAATCGGCCTTATTCCCACTGCTGTGTTGCTTCTGGGTCTGTTTTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAGCGAGGACGCACAAAAGATTTTGTGGCAGCATTACAAATACTTCGCGGTAAAGATGCTGATATATCTGAAGAGGCAGAAGAAATTCAGGTATCTGGATCAGGATTGGTTGCAGGATGCATATTTACAGCAGTTGCATTCTATCTCAAGGTTCATGATGTGGCTGTGGGAGCAGTCCCAGCACTTGCCGTAACCGGCATATTGGCATGGCTACATCATCTTTCTCTGCTGATGCATTTGTTATATGTATCTCATAAATATGAATTCATGCTCCATGTAACACTGCTCTTTCATTTGCTGATATTAGGTCTACATAGGATCGTTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGTCAATATCAAGGGGCAGGCAGGAAGCATCGCAACATTAGTGAACTGGTTTGGTGCATGGTTATGCTCCTAG
Protein sequence

>MsG0280007637.01.T01

MCYIYKVPVFVAEIAPKELRGALTTLNQFMIVTAVSVSFIIGTVLSWRALAIIGLIPTAVLLLGLFFIPESPRWLAKRGRTKDFVAALQILRGKDADISEEAEEIQVSGSGLVAGCIFTAVAFYLKVHDVAVGAVPALAVTGILAWLHHLSLLMHLLYVSHKYEFMLHVTLLFHLLILGLHRIVFNRNGSNSMGCDVRVNIKGQAGSIATLVNWFGAWLCS*