AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007868.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007868.01.T01 MTR_2g034470 97.050 339 6 1 7 345 28 362 0.0 674
MsG0280007868.01.T01 MTR_2g034470 96.979 331 6 1 15 345 1 327 0.0 654
MsG0280007868.01.T01 MTR_2g034440 93.987 316 18 1 7 321 20 335 0.0 603
MsG0280007868.01.T01 MTR_2g034480 75.942 345 82 1 1 345 19 362 0.0 537
MsG0280007868.01.T01 MTR_4g076570 55.414 314 136 3 9 320 22 333 3.46e-119 348
MsG0280007868.01.T01 MTR_1g052430 54.545 319 138 4 4 317 24 340 1.00e-117 346
MsG0280007868.01.T01 MTR_4g076470 53.185 314 138 4 9 321 23 328 3.21e-109 322
MsG0280007868.01.T01 MTR_4g076255 53.605 319 136 7 6 321 21 330 2.68e-108 320
MsG0280007868.01.T01 MTR_4g076440 51.274 314 144 4 9 321 23 328 1.84e-103 307
MsG0280007868.01.T01 MTR_4g076490 49.704 338 157 6 7 342 95 421 2.58e-103 310
MsG0280007868.01.T01 MTR_4g076430 50.955 314 145 4 9 321 23 328 5.73e-102 303
MsG0280007868.01.T01 MTR_4g076500 50.163 307 143 5 9 311 78 378 4.10e-100 301
MsG0280007868.01.T01 MTR_6g088885 38.110 328 191 7 6 324 24 348 4.83e-73 235
MsG0280007868.01.T01 MTR_7g081350 40.635 315 177 6 9 319 27 335 1.49e-72 228
MsG0280007868.01.T01 MTR_3g080410 39.514 329 186 8 6 323 23 349 2.55e-69 221
MsG0280007868.01.T01 MTR_5g085580 37.838 333 194 8 9 330 25 355 2.66e-67 219
MsG0280007868.01.T01 MTR_8g012400 35.629 334 201 8 3 324 23 354 2.69e-66 216
MsG0280007868.01.T01 MTR_4g069940 37.576 330 195 7 2 322 22 349 3.27e-66 216
MsG0280007868.01.T01 MTR_1g056640 38.080 323 188 8 4 317 34 353 4.10e-66 216
MsG0280007868.01.T01 MTR_7g053500 34.954 329 200 8 8 324 25 351 9.51e-65 212
MsG0280007868.01.T01 MTR_4g052970 36.963 349 199 9 6 345 26 362 1.36e-64 209
MsG0280007868.01.T01 MTR_7g081370 38.462 312 175 5 9 319 28 323 3.11e-64 207
MsG0280007868.01.T01 MTR_4g088155 36.499 337 196 10 3 324 17 350 4.34e-64 210
MsG0280007868.01.T01 MTR_4g010200 36.957 322 194 6 10 323 34 354 1.09e-63 207
MsG0280007868.01.T01 MTR_3g116510 34.954 329 203 7 2 321 21 347 1.20e-62 206
MsG0280007868.01.T01 MTR_2g086530 35.542 332 194 11 6 325 5 328 1.51e-60 198
MsG0280007868.01.T01 MTR_2g086530 35.503 338 197 12 1 325 20 349 2.07e-60 199
MsG0280007868.01.T01 MTR_1g077990 36.646 322 193 8 9 322 31 349 2.32e-59 196
MsG0280007868.01.T01 MTR_4g084480 35.583 326 198 8 7 323 30 352 3.74e-59 196
MsG0280007868.01.T01 MTR_4g084480 35.802 324 196 8 7 321 23 343 3.95e-59 195
MsG0280007868.01.T01 MTR_4g084480 35.583 326 198 8 7 323 30 352 5.28e-59 195
MsG0280007868.01.T01 MTR_4g114850 33.642 324 202 8 10 323 27 347 1.23e-58 193
MsG0280007868.01.T01 MTR_4g114850 33.642 324 202 8 10 323 27 347 1.84e-58 193
MsG0280007868.01.T01 MTR_4g114850 33.437 323 204 7 10 323 27 347 2.14e-58 193
MsG0280007868.01.T01 MTR_1g007810 39.062 320 177 11 9 317 16 328 2.85e-58 192
MsG0280007868.01.T01 MTR_1g022160 34.877 324 199 8 9 322 24 345 4.09e-57 191
MsG0280007868.01.T01 MTR_1g022160 34.877 324 199 8 9 322 24 345 2.25e-56 191
MsG0280007868.01.T01 MTR_1g022160 34.877 324 199 8 9 322 24 345 2.77e-56 191
MsG0280007868.01.T01 MTR_4g124440 35.110 319 198 5 13 323 32 349 3.24e-56 191
MsG0280007868.01.T01 MTR_1g022160 34.877 324 199 8 9 322 24 345 3.28e-56 190
MsG0280007868.01.T01 MTR_1g031900 36.890 328 194 7 7 323 22 347 6.47e-56 190
MsG0280007868.01.T01 MTR_1g031900 36.890 328 194 7 7 323 22 347 7.71e-56 189
MsG0280007868.01.T01 MTR_7g026340 37.267 322 184 13 9 320 23 336 3.48e-55 187
MsG0280007868.01.T01 MTR_3g065460 37.309 327 192 7 9 324 24 348 1.01e-54 186
MsG0280007868.01.T01 MTR_5g078200 37.920 327 190 7 9 324 23 347 4.92e-54 187
MsG0280007868.01.T01 MTR_3g083580 33.234 334 199 7 6 322 23 349 1.29e-53 184
MsG0280007868.01.T01 MTR_8g102340 33.819 343 179 11 5 338 24 327 2.29e-53 182
MsG0280007868.01.T01 MTR_8g085720 32.955 352 220 7 1 338 18 367 3.86e-53 182
MsG0280007868.01.T01 MTR_2g027560 34.268 321 200 6 7 317 26 345 5.36e-53 182
MsG0280007868.01.T01 MTR_4g132280 34.139 331 205 7 4 323 40 368 9.19e-53 182
MsG0280007868.01.T01 MTR_5g078200 37.975 316 183 7 20 324 1 314 1.90e-52 183
MsG0280007868.01.T01 MTR_8g092070 31.790 324 212 5 9 324 34 356 8.07e-52 181
MsG0280007868.01.T01 MTR_4g112025 32.931 331 211 6 3 323 25 354 2.92e-51 178
MsG0280007868.01.T01 MTR_7g085390 33.435 329 203 7 9 325 26 350 3.50e-51 177
MsG0280007868.01.T01 MTR_2g019345 34.146 328 205 8 1 320 16 340 5.34e-51 174
MsG0280007868.01.T01 MTR_1g010120 34.385 317 199 6 9 317 26 341 3.70e-50 174
MsG0280007868.01.T01 MTR_8g012400 34.545 275 166 8 62 324 2 274 2.21e-49 170
MsG0280007868.01.T01 MTR_6g032820 32.919 322 202 6 9 318 26 345 9.49e-49 169
MsG0280007868.01.T01 MTR_1g053320 31.832 333 217 6 1 323 22 354 1.65e-47 167
MsG0280007868.01.T01 MTR_7g053500 33.818 275 168 8 62 324 2 274 1.43e-46 162
MsG0280007868.01.T01 MTR_3g095050 31.804 327 206 8 9 324 34 354 2.47e-46 164
MsG0280007868.01.T01 MTR_4g083500 35.455 330 196 12 2 320 37 360 2.81e-45 162
MsG0280007868.01.T01 MTR_3g108600 33.228 316 185 6 9 317 31 327 9.62e-45 159
MsG0280007868.01.T01 MTR_3g031770 31.013 316 209 6 9 317 27 340 1.32e-43 157
MsG0280007868.01.T01 MTR_5g081720 33.227 313 187 13 35 337 63 363 7.86e-37 136
MsG0280007868.01.T01 MTR_4g134280 35.065 231 141 5 96 319 2 230 3.22e-36 135
MsG0280007868.01.T01 MTR_3g116510 35.047 214 129 6 117 321 1 213 1.11e-35 132
MsG0280007868.01.T01 MTR_4g036680 48.936 94 46 2 226 317 80 173 5.52e-24 98.6
MsG0280007868.01.T01 MTR_4g036680 65.672 67 22 1 6 71 18 84 1.31e-22 94.7
MsG0280007868.01.T01 MTR_4g036775 48.936 94 46 2 226 317 80 173 2.60e-23 96.7
MsG0280007868.01.T01 MTR_4g036775 64.286 70 24 1 3 71 15 84 1.50e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007868.01.T01 AT4G16260 61.538 325 117 4 5 326 20 339 1.00e-146 418
MsG0280007868.01.T01 AT4G16260 61.587 315 113 4 15 326 1 310 1.56e-140 401
MsG0280007868.01.T01 AT3G57270 51.250 320 150 3 5 321 23 339 1.45e-110 326
MsG0280007868.01.T01 AT3G57240 52.012 323 144 6 1 321 27 340 1.22e-105 313
MsG0280007868.01.T01 AT3G57260 48.137 322 157 4 2 321 25 338 1.33e-101 303
MsG0280007868.01.T01 AT3G57260 48.137 322 157 4 2 321 41 354 2.04e-101 303
MsG0280007868.01.T01 AT5G56590 38.602 329 190 7 6 324 23 349 6.15e-75 240
MsG0280007868.01.T01 AT2G16230 39.939 328 186 7 3 321 19 344 8.25e-71 229
MsG0280007868.01.T01 AT5G20390 38.750 320 183 7 2 315 26 338 1.80e-70 223
MsG0280007868.01.T01 AT4G29360 40.059 337 190 7 6 333 24 357 1.55e-67 221
MsG0280007868.01.T01 AT4G29360 40.059 337 190 7 6 333 34 367 1.85e-67 221
MsG0280007868.01.T01 AT5G20340 38.558 319 185 6 2 315 36 348 4.01e-67 215
MsG0280007868.01.T01 AT2G26600 35.826 321 195 7 10 321 35 353 2.95e-66 214
MsG0280007868.01.T01 AT4G34480 38.720 328 190 7 3 321 20 345 2.95e-65 210
MsG0280007868.01.T01 AT5G20330 38.558 319 185 6 2 315 27 339 3.88e-65 210
MsG0280007868.01.T01 AT2G05790 36.310 336 201 8 7 331 23 356 6.65e-65 213
MsG0280007868.01.T01 AT1G77790 38.318 321 183 7 5 317 26 339 6.44e-64 206
MsG0280007868.01.T01 AT5G55180 37.423 326 191 8 9 324 27 349 1.12e-63 209
MsG0280007868.01.T01 AT5G55180 37.423 326 191 8 9 324 27 349 1.19e-63 209
MsG0280007868.01.T01 AT5G42720 35.821 335 205 7 2 327 19 352 1.23e-63 209
MsG0280007868.01.T01 AT3G07320 34.036 332 203 9 10 328 26 354 1.24e-63 209
MsG0280007868.01.T01 AT4G34480 38.720 328 190 7 3 321 20 345 1.31e-63 210
MsG0280007868.01.T01 AT4G26830 35.484 341 202 9 3 331 23 357 4.48e-63 207
MsG0280007868.01.T01 AT4G26830 35.821 335 197 9 9 331 25 353 5.27e-63 207
MsG0280007868.01.T01 AT2G27500 36.061 330 198 9 6 325 26 352 5.88e-63 205
MsG0280007868.01.T01 AT2G27500 36.061 330 198 9 6 325 26 352 9.39e-63 205
MsG0280007868.01.T01 AT1G32860 35.385 325 196 8 8 321 28 349 2.52e-62 205
MsG0280007868.01.T01 AT3G15800 35.494 324 197 8 10 323 44 365 7.62e-61 200
MsG0280007868.01.T01 AT1G33220 37.748 302 177 6 2 298 27 322 2.61e-60 197
MsG0280007868.01.T01 AT5G20560 36.688 308 185 6 9 311 34 336 4.42e-59 194
MsG0280007868.01.T01 AT5G42100 38.298 329 186 11 7 322 25 349 5.65e-59 196
MsG0280007868.01.T01 AT5G42100 38.298 329 186 11 7 322 25 349 6.66e-59 196
MsG0280007868.01.T01 AT2G01630 36.503 326 194 6 9 323 23 346 2.65e-58 193
MsG0280007868.01.T01 AT2G01630 36.503 326 194 6 9 323 23 346 1.15e-57 193
MsG0280007868.01.T01 AT3G61810 34.969 326 192 7 9 322 55 372 1.75e-57 191
MsG0280007868.01.T01 AT1G77780 35.577 312 191 7 10 317 25 330 5.86e-57 189
MsG0280007868.01.T01 AT2G01630 36.503 326 194 6 9 323 23 346 6.75e-57 192
MsG0280007868.01.T01 AT4G14080 33.233 331 206 9 6 324 39 366 4.20e-56 190
MsG0280007868.01.T01 AT4G18340 35.650 331 193 9 4 321 29 352 6.26e-56 187
MsG0280007868.01.T01 AT3G23770 33.239 355 220 10 6 345 34 386 6.27e-56 189
MsG0280007868.01.T01 AT4G18340 35.542 332 194 9 4 322 29 353 7.59e-56 187
MsG0280007868.01.T01 AT1G30080 34.146 328 206 7 1 320 28 353 1.02e-55 186
MsG0280007868.01.T01 AT1G30080 34.146 328 206 7 1 320 28 353 2.49e-55 186
MsG0280007868.01.T01 AT1G66250 35.714 322 195 6 6 317 29 348 5.41e-55 187
MsG0280007868.01.T01 AT5G18220 34.154 325 203 6 7 323 28 349 2.58e-54 185
MsG0280007868.01.T01 AT1G11820 33.033 333 209 7 9 329 44 374 1.29e-53 181
MsG0280007868.01.T01 AT5G58090 33.437 323 206 5 3 317 16 337 2.54e-53 182
MsG0280007868.01.T01 AT3G04010 34.663 326 200 7 9 324 33 355 1.04e-52 181
MsG0280007868.01.T01 AT1G11820 33.333 327 205 6 9 324 44 368 2.80e-52 180
MsG0280007868.01.T01 AT5G24318 35.061 328 189 11 7 320 28 345 3.43e-52 177
MsG0280007868.01.T01 AT1G11820 33.333 327 205 6 9 324 44 368 5.31e-52 180
MsG0280007868.01.T01 AT4G31140 34.069 317 200 5 9 317 27 342 1.54e-51 178
MsG0280007868.01.T01 AT5G24318 35.152 330 186 12 7 320 28 345 3.69e-51 176
MsG0280007868.01.T01 AT5G24318 35.061 328 189 11 7 320 28 345 4.08e-51 176
MsG0280007868.01.T01 AT5G58480 32.716 324 209 5 9 324 26 348 1.58e-50 175
MsG0280007868.01.T01 AT2G19440 33.436 326 204 8 9 324 21 343 3.82e-50 174
MsG0280007868.01.T01 AT2G19440 33.436 326 204 8 9 324 21 343 3.82e-50 174
MsG0280007868.01.T01 AT2G26600 36.398 261 155 7 70 321 1 259 5.16e-50 169
MsG0280007868.01.T01 AT3G24330 32.229 332 214 7 3 324 33 363 1.32e-49 173
MsG0280007868.01.T01 AT2G27500 35.145 276 168 7 59 325 1 274 1.33e-49 169
MsG0280007868.01.T01 AT3G13560 33.951 324 201 7 6 318 23 344 5.19e-49 172
MsG0280007868.01.T01 AT3G13560 33.951 324 201 7 6 318 23 344 5.19e-49 172
MsG0280007868.01.T01 AT3G13560 33.951 324 201 7 6 318 23 344 5.19e-49 172
MsG0280007868.01.T01 AT3G13560 33.951 324 201 7 6 318 23 344 5.19e-49 172
MsG0280007868.01.T01 AT3G13560 33.951 324 201 7 6 318 23 344 5.19e-49 172
MsG0280007868.01.T01 AT4G17180 33.750 320 196 8 7 317 23 335 8.80e-49 171
MsG0280007868.01.T01 AT1G64760 32.822 326 206 8 9 324 25 347 9.24e-49 171
MsG0280007868.01.T01 AT1G64760 32.822 326 206 8 9 324 25 347 9.24e-49 171
MsG0280007868.01.T01 AT3G55430 36.000 325 190 13 7 321 27 343 1.90e-47 166
MsG0280007868.01.T01 AT3G46570 34.650 329 196 13 4 320 22 343 7.14e-45 157
MsG0280007868.01.T01 AT5G64790 30.341 323 216 6 10 324 29 350 1.74e-44 159
MsG0280007868.01.T01 AT5G20870 32.209 326 201 9 13 321 34 356 1.41e-43 157
MsG0280007868.01.T01 AT2G39640 32.515 326 204 12 2 320 23 339 3.72e-41 151
MsG0280007868.01.T01 AT3G55780 32.024 331 201 13 9 322 31 354 4.02e-39 142
MsG0280007868.01.T01 AT4G34480 38.462 234 133 7 97 321 3 234 5.17e-36 135
MsG0280007868.01.T01 AT5G24318 34.112 214 120 8 120 320 1 206 1.28e-26 107

Find 69 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATTGAAACTTATATATT+TGG 0.075979 2:-22042722 MsG0280007868.01.T01:CDS
ACAAAGCATCAAATAAATTT+TGG 0.183195 2:+22042918 None:intergenic
CCTGAGTTAGAGAAACATTT+TGG 0.189107 2:-22042674 MsG0280007868.01.T01:CDS
ATTTGGATTTGAAGGGAAAA+TGG 0.227616 2:-22042618 MsG0280007868.01.T01:CDS
AAGTGATGTGAGGTCATATT+TGG 0.246765 2:-22043095 MsG0280007868.01.T01:CDS
TATTGAAGTGAGATGTCTTT+TGG 0.257327 2:+22042992 None:intergenic
CTTCTCCAAATGTTGTGGTT+TGG 0.271577 2:-22042958 MsG0280007868.01.T01:CDS
TATACTAAGTAGCCTATAAT+TGG 0.277041 2:+22043070 None:intergenic
TTCTCCAAATGTTGTGGTTT+GGG 0.280883 2:-22042957 MsG0280007868.01.T01:CDS
TCATATTTGGATCCAATTAT+AGG 0.286433 2:-22043082 MsG0280007868.01.T01:CDS
AATTTGATTAGGCATGTTAA+AGG 0.330111 2:-22042767 MsG0280007868.01.T01:CDS
CCATTGAAACTTATATATTT+GGG 0.335024 2:-22042721 MsG0280007868.01.T01:CDS
AAATTTATTTGATGCTTTGT+TGG 0.344765 2:-22042915 MsG0280007868.01.T01:CDS
ATTCGCAAAATTTGTTCTTC+CGG 0.345878 2:-22043239 MsG0280007868.01.T01:CDS
CCCAAATATATAAGTTTCAA+TGG 0.347808 2:+22042721 None:intergenic
GCAATTGATAATACTGGAAT+TGG 0.351863 2:-22042878 MsG0280007868.01.T01:CDS
TCACAAGCAGGTGCTCAAAT+AGG 0.357040 2:-22043565 MsG0280007868.01.T01:CDS
GAGTAAATATTTGCAAATAA+AGG 0.360502 2:+22043037 None:intergenic
TCTGGCATTGAACTTATGTT+AGG 0.373181 2:-22043412 MsG0280007868.01.T01:CDS
GCTATTGACATGACCATGAT+AGG 0.381065 2:-22043151 MsG0280007868.01.T01:CDS
CATGCTGCAATTGATAATAC+TGG 0.383359 2:-22042884 MsG0280007868.01.T01:CDS
TTTATCTTGATAATTTGATT+AGG 0.386954 2:-22042778 MsG0280007868.01.T01:CDS
GCTTCAAGAGCAGCTTGGTT+TGG 0.388792 2:+22043445 None:intergenic
TTGTGGTTTGGGATGGTTCA+AGG 0.389750 2:-22042946 MsG0280007868.01.T01:CDS
AATTGAGAATTGCCGCCAAC+TGG 0.393043 2:+22043259 None:intergenic
CCATCCCAAACCACAACATT+TGG 0.400777 2:+22042953 None:intergenic
ACAATGACATTGCAATTCAA+TGG 0.401193 2:-22043354 MsG0280007868.01.T01:CDS
AAGTATCCATTTGGATTTGA+AGG 0.411654 2:-22042626 MsG0280007868.01.T01:CDS
TGTGGTTTGGGATGGTTCAA+GGG 0.420618 2:-22042945 MsG0280007868.01.T01:CDS
CCAAAATGTTTCTCTAACTC+AGG 0.430512 2:+22042674 None:intergenic
GCTCAAATAGGTGTTTGTTA+TGG 0.432274 2:-22043553 MsG0280007868.01.T01:CDS
AATTAAATGTCACTCTTAAG+AGG 0.439107 2:+22042554 None:intergenic
ACTTCGTATCCGCCGTCTAA+AGG 0.439251 2:-22043127 MsG0280007868.01.T01:CDS
GATTTGAAGGGAAAATGGAT+TGG 0.448353 2:-22042613 MsG0280007868.01.T01:CDS
ATTTGAAGGGAAAATGGATT+GGG 0.457784 2:-22042612 MsG0280007868.01.T01:CDS
CAATGACATTGCAATTCAAT+GGG 0.471685 2:-22043353 MsG0280007868.01.T01:CDS
AAATCTTCACGATCAAATCA+AGG 0.476242 2:-22043182 MsG0280007868.01.T01:CDS
TTGAATTGCAATGTCATTGT+TGG 0.477945 2:+22043357 None:intergenic
CCAAATGTTGTGGTTTGGGA+TGG 0.482378 2:-22042953 MsG0280007868.01.T01:CDS
AGGTGTTTGTTATGGTATGA+TGG 0.484462 2:-22043545 MsG0280007868.01.T01:CDS
GTGGTTTGGGATGGTTCAAG+GGG 0.489821 2:-22042944 MsG0280007868.01.T01:CDS
ATTCACTTCTCCAAATGTTG+TGG 0.493787 2:-22042963 MsG0280007868.01.T01:CDS
TGATTAGGCATGTTAAAGGT+GGG 0.513293 2:-22042763 MsG0280007868.01.T01:CDS
GGTGGGACACCAATGAGGTC+TGG 0.514579 2:-22042746 MsG0280007868.01.T01:CDS
AGATCTATTGCTTCACGTTG+TGG 0.516948 2:+22043508 None:intergenic
CCAAATATATAAGTTTCAAT+GGG 0.518047 2:+22042722 None:intergenic
AAGGTTGTTGTGTCTGAAAG+TGG 0.522952 2:-22042848 MsG0280007868.01.T01:CDS
CTTGAAGCACTTAGAAACTC+TGG 0.524132 2:-22043430 MsG0280007868.01.T01:CDS
AGTATCCATTTGGATTTGAA+GGG 0.525147 2:-22042625 MsG0280007868.01.T01:CDS
TTGATTAGGCATGTTAAAGG+TGG 0.546182 2:-22042764 MsG0280007868.01.T01:CDS
TCAATGGGTCCAGACCTCAT+TGG 0.548344 2:+22042737 None:intergenic
AAAATGGATTGGGAAATTGA+TGG 0.551523 2:-22042602 MsG0280007868.01.T01:CDS
AACGAAGTTAATCCAGTTGG+CGG 0.564618 2:-22043271 MsG0280007868.01.T01:CDS
CGATCAAATCAAGGTTTCAA+CGG 0.570099 2:-22043173 MsG0280007868.01.T01:CDS
CAAACAACATCAAAAGAATG+AGG 0.570130 2:-22043477 MsG0280007868.01.T01:CDS
CGGATACGAAGTTCCTATCA+TGG 0.570657 2:+22043138 None:intergenic
GAAAGTGGTTGGCCTTCAGA+TGG 0.571089 2:-22042833 MsG0280007868.01.T01:CDS
GGTGTTTGTTATGGTATGAT+GGG 0.574240 2:-22043544 MsG0280007868.01.T01:CDS
AGTGGTTGGCCTTCAGATGG+TGG 0.591010 2:-22042830 MsG0280007868.01.T01:CDS
TTGTTGTGTCTGAAAGTGGT+TGG 0.599923 2:-22042844 MsG0280007868.01.T01:CDS
TCTATTGCTTCACGTTGTGG+TGG 0.611423 2:+22043511 None:intergenic
TAAGTGCTTCAAGAGCAGCT+TGG 0.628533 2:+22043440 None:intergenic
GGTAACGAAGTTAATCCAGT+TGG 0.636313 2:-22043274 MsG0280007868.01.T01:CDS
AAAATCAAATACATCGCGGT+CGG 0.638139 2:-22043295 MsG0280007868.01.T01:CDS
GTTCATTTAAAAGTGATGTG+AGG 0.641856 2:-22043105 MsG0280007868.01.T01:CDS
GTTGCAAATCCACCATCTGA+AGG 0.643788 2:+22042821 None:intergenic
TTAAATGAACCTTTAGACGG+CGG 0.669154 2:+22043118 None:intergenic
TTAAAGGTGGGACACCAATG+AGG 0.687393 2:-22042751 MsG0280007868.01.T01:CDS
TGTCAAAATCAAATACATCG+CGG 0.787139 2:-22043299 MsG0280007868.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATCTTGATAATTTGATT+AGG - Chr2:22043349-22043368 MsG0280007868.01.T01:CDS 15.0%
!! AAATTTATTTGATGCTTTGT+TGG - Chr2:22043212-22043231 MsG0280007868.01.T01:CDS 20.0%
!! CCAAATATATAAGTTTCAAT+GGG + Chr2:22043408-22043427 None:intergenic 20.0%
!! CCATTGAAACTTATATATTT+GGG - Chr2:22043406-22043425 MsG0280007868.01.T01:CDS 20.0%
!! GAGTAAATATTTGCAAATAA+AGG + Chr2:22043093-22043112 None:intergenic 20.0%
!!! ACAAAGCATCAAATAAATTT+TGG + Chr2:22043212-22043231 None:intergenic 20.0%
!!! TGATATATATTTTGAATTGC+CGG + Chr2:22042910-22042929 None:intergenic 20.0%
! AATTTGATTAGGCATGTTAA+AGG - Chr2:22043360-22043379 MsG0280007868.01.T01:CDS 25.0%
! CCCAAATATATAAGTTTCAA+TGG + Chr2:22043409-22043428 None:intergenic 25.0%
! CCCATTGAAACTTATATATT+TGG - Chr2:22043405-22043424 MsG0280007868.01.T01:CDS 25.0%
! TATACTAAGTAGCCTATAAT+TGG + Chr2:22043060-22043079 None:intergenic 25.0%
! TCATATTTGGATCCAATTAT+AGG - Chr2:22043045-22043064 MsG0280007868.01.T01:CDS 25.0%
!! CTTTTAAATGAACCTTTAGA+CGG + Chr2:22043015-22043034 None:intergenic 25.0%
!!! AAACAGAAAAAGTATCCATT+TGG - Chr2:22043492-22043511 MsG0280007868.01.T01:CDS 25.0%
!!! ATGTATTTGATTTTGACACT+AGG + Chr2:22042826-22042845 None:intergenic 25.0%
!!! ATGTTTTGAAGATCAGAATT+TGG + Chr2:22042745-22042764 None:intergenic 25.0%
!!! GGATACTTTTTCTGTTTATT+AGG + Chr2:22043489-22043508 None:intergenic 25.0%
!!! TGTATTTGATTTTGACACTA+GGG + Chr2:22042825-22042844 None:intergenic 25.0%
AAATCTTCACGATCAAATCA+AGG - Chr2:22042945-22042964 MsG0280007868.01.T01:CDS 30.0%
AAGTATCCATTTGGATTTGA+AGG - Chr2:22043501-22043520 MsG0280007868.01.T01:CDS 30.0%
ACAATGACATTGCAATTCAA+TGG - Chr2:22042773-22042792 MsG0280007868.01.T01:CDS 30.0%
AGTATCCATTTGGATTTGAA+GGG - Chr2:22043502-22043521 MsG0280007868.01.T01:CDS 30.0%
ATTTGGATTTGAAGGGAAAA+TGG - Chr2:22043509-22043528 MsG0280007868.01.T01:CDS 30.0%
CAAACAACATCAAAAGAATG+AGG - Chr2:22042650-22042669 MsG0280007868.01.T01:CDS 30.0%
CAATGACATTGCAATTCAAT+GGG - Chr2:22042774-22042793 MsG0280007868.01.T01:CDS 30.0%
GTTCATTTAAAAGTGATGTG+AGG - Chr2:22043022-22043041 MsG0280007868.01.T01:CDS 30.0%
TGTCAAAATCAAATACATCG+CGG - Chr2:22042828-22042847 MsG0280007868.01.T01:CDS 30.0%
TTGAATTGCAATGTCATTGT+TGG + Chr2:22042773-22042792 None:intergenic 30.0%
! ATTCGCAAAATTTGTTCTTC+CGG - Chr2:22042888-22042907 MsG0280007868.01.T01:CDS 30.0%
! ATTGAAGTGAGATGTCTTTT+GGG + Chr2:22043137-22043156 None:intergenic 30.0%
! ATTTGAAGGGAAAATGGATT+GGG - Chr2:22043515-22043534 MsG0280007868.01.T01:CDS 30.0%
! ATTTTCCCTTCAAATCCAAA+TGG + Chr2:22043510-22043529 None:intergenic 30.0%
! GCAATTGATAATACTGGAAT+TGG - Chr2:22043249-22043268 MsG0280007868.01.T01:CDS 30.0%
! TATTGAAGTGAGATGTCTTT+TGG + Chr2:22043138-22043157 None:intergenic 30.0%
!! AAAATGGATTGGGAAATTGA+TGG - Chr2:22043525-22043544 MsG0280007868.01.T01:CDS 30.0%
!!! TACTGGAATTGGTTTTGTTA+AGG - Chr2:22043260-22043279 MsG0280007868.01.T01:CDS 30.0%
AAAATCAAATACATCGCGGT+CGG - Chr2:22042832-22042851 MsG0280007868.01.T01:CDS 35.0%
AAGTGATGTGAGGTCATATT+TGG - Chr2:22043032-22043051 MsG0280007868.01.T01:CDS 35.0%
ATTCACTTCTCCAAATGTTG+TGG - Chr2:22043164-22043183 MsG0280007868.01.T01:CDS 35.0%
CCAAAATGTTTCTCTAACTC+AGG + Chr2:22043456-22043475 None:intergenic 35.0%
CGATCAAATCAAGGTTTCAA+CGG - Chr2:22042954-22042973 MsG0280007868.01.T01:CDS 35.0%
GATTTGAAGGGAAAATGGAT+TGG - Chr2:22043514-22043533 MsG0280007868.01.T01:CDS 35.0%
TGATTAGGCATGTTAAAGGT+GGG - Chr2:22043364-22043383 MsG0280007868.01.T01:CDS 35.0%
TTAAATGAACCTTTAGACGG+CGG + Chr2:22043012-22043031 None:intergenic 35.0%
TTCTCCAAATGTTGTGGTTT+GGG - Chr2:22043170-22043189 MsG0280007868.01.T01:CDS 35.0%
TTGATTAGGCATGTTAAAGG+TGG - Chr2:22043363-22043382 MsG0280007868.01.T01:CDS 35.0%
! CATGCTGCAATTGATAATAC+TGG - Chr2:22043243-22043262 MsG0280007868.01.T01:CDS 35.0%
! CCTGAGTTAGAGAAACATTT+TGG - Chr2:22043453-22043472 MsG0280007868.01.T01:CDS 35.0%
! GCTCAAATAGGTGTTTGTTA+TGG - Chr2:22042574-22042593 MsG0280007868.01.T01:CDS 35.0%
! TCTGGCATTGAACTTATGTT+AGG - Chr2:22042715-22042734 MsG0280007868.01.T01:CDS 35.0%
!! AGGTGTTTGTTATGGTATGA+TGG - Chr2:22042582-22042601 MsG0280007868.01.T01:CDS 35.0%
!! GGTGTTTGTTATGGTATGAT+GGG - Chr2:22042583-22042602 MsG0280007868.01.T01:CDS 35.0%
AACGAAGTTAATCCAGTTGG+CGG - Chr2:22042856-22042875 MsG0280007868.01.T01:CDS 40.0%
AAGGTTGTTGTGTCTGAAAG+TGG - Chr2:22043279-22043298 MsG0280007868.01.T01:CDS 40.0%
AGATCTATTGCTTCACGTTG+TGG + Chr2:22042622-22042641 None:intergenic 40.0%
CTTCTCCAAATGTTGTGGTT+TGG - Chr2:22043169-22043188 MsG0280007868.01.T01:CDS 40.0%
GCTATTGACATGACCATGAT+AGG - Chr2:22042976-22042995 MsG0280007868.01.T01:CDS 40.0%
GGTAACGAAGTTAATCCAGT+TGG - Chr2:22042853-22042872 MsG0280007868.01.T01:CDS 40.0%
TTGTTGTGTCTGAAAGTGGT+TGG - Chr2:22043283-22043302 MsG0280007868.01.T01:CDS 40.0%
! CTTGAAGCACTTAGAAACTC+TGG - Chr2:22042697-22042716 MsG0280007868.01.T01:CDS 40.0%
AATTGAGAATTGCCGCCAAC+TGG + Chr2:22042871-22042890 None:intergenic 45.0%
CCATCCCAAACCACAACATT+TGG + Chr2:22043177-22043196 None:intergenic 45.0%
CGGATACGAAGTTCCTATCA+TGG + Chr2:22042992-22043011 None:intergenic 45.0%
GTTGCAAATCCACCATCTGA+AGG + Chr2:22043309-22043328 None:intergenic 45.0%
TAAGTGCTTCAAGAGCAGCT+TGG + Chr2:22042690-22042709 None:intergenic 45.0%
TCACAAGCAGGTGCTCAAAT+AGG - Chr2:22042562-22042581 MsG0280007868.01.T01:CDS 45.0%
TCTATTGCTTCACGTTGTGG+TGG + Chr2:22042619-22042638 None:intergenic 45.0%
TTAAAGGTGGGACACCAATG+AGG - Chr2:22043376-22043395 MsG0280007868.01.T01:CDS 45.0%
! CCAAATGTTGTGGTTTGGGA+TGG - Chr2:22043174-22043193 MsG0280007868.01.T01:CDS 45.0%
! TGTGGTTTGGGATGGTTCAA+GGG - Chr2:22043182-22043201 MsG0280007868.01.T01:CDS 45.0%
! TTGTGGTTTGGGATGGTTCA+AGG - Chr2:22043181-22043200 MsG0280007868.01.T01:CDS 45.0%
ACTTCGTATCCGCCGTCTAA+AGG - Chr2:22043000-22043019 MsG0280007868.01.T01:CDS 50.0%
GCTTCAAGAGCAGCTTGGTT+TGG + Chr2:22042685-22042704 None:intergenic 50.0%
TCAATGGGTCCAGACCTCAT+TGG + Chr2:22043393-22043412 None:intergenic 50.0%
! GTGGTTTGGGATGGTTCAAG+GGG - Chr2:22043183-22043202 MsG0280007868.01.T01:CDS 50.0%
!! GAAAGTGGTTGGCCTTCAGA+TGG - Chr2:22043294-22043313 MsG0280007868.01.T01:CDS 50.0%
!! AGTGGTTGGCCTTCAGATGG+TGG - Chr2:22043297-22043316 MsG0280007868.01.T01:CDS 55.0%
GGTGGGACACCAATGAGGTC+TGG - Chr2:22043381-22043400 MsG0280007868.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 22042556 22043593 22042556 ID=MsG0280007868.01;Name=MsG0280007868.01
Chr2 mRNA 22042556 22043593 22042556 ID=MsG0280007868.01.T01;Parent=MsG0280007868.01;Name=MsG0280007868.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|345
Chr2 exon 22042556 22043593 22042556 ID=MsG0280007868.01.T01:exon:18236;Parent=MsG0280007868.01.T01
Chr2 CDS 22042556 22043593 22042556 ID=MsG0280007868.01.T01:cds;Parent=MsG0280007868.01.T01
Gene Sequence

>MsG0280007868.01.T01

ATGTTTTCACAAGCAGGTGCTCAAATAGGTGTTTGTTATGGTATGATGGGAAACAATCTACCACCACAACGTGAAGCAATAGATCTTTGCAAATCAAACAACATCAAAAGAATGAGGCTATATGATCCAAACCAAGCTGCTCTTGAAGCACTTAGAAACTCTGGCATTGAACTTATGTTAGGTGTGCCAAATTCTGATCTTCAAAACATTGCTACCAACAATGACATTGCAATTCAATGGGTACAAAAAAATGTACTAAACTTCTACCCTAGTGTCAAAATCAAATACATCGCGGTCGGTAACGAAGTTAATCCAGTTGGCGGCAATTCTCAATTCGCAAAATTTGTTCTTCCGGCAATTCAAAATATATATCAAGCAATAAGAGCGAAAAATCTTCACGATCAAATCAAGGTTTCAACGGCTATTGACATGACCATGATAGGAACTTCGTATCCGCCGTCTAAAGGTTCATTTAAAAGTGATGTGAGGTCATATTTGGATCCAATTATAGGCTACTTAGTATATGCAAATGCACCTTTATTTGCAAATATTTACTCTTATTTTAGCTATAAAGATAACCCAAAAGACATCTCACTTCAATATGCTTTATTCACTTCTCCAAATGTTGTGGTTTGGGATGGTTCAAGGGGATACCAAAATTTATTTGATGCTTTGTTGGATTCATTACATGCTGCAATTGATAATACTGGAATTGGTTTTGTTAAGGTTGTTGTGTCTGAAAGTGGTTGGCCTTCAGATGGTGGATTTGCAACTACTTATGATAATGCAAGAATTTATCTTGATAATTTGATTAGGCATGTTAAAGGTGGGACACCAATGAGGTCTGGACCCATTGAAACTTATATATTTGGGTTGTTTGATGAGAATCAGAAGAATCCTGAGTTAGAGAAACATTTTGGAGTGTTTTATCCTAATAAACAGAAAAAGTATCCATTTGGATTTGAAGGGAAAATGGATTGGGAAATTGATGGTACTAATTTGTTTAATGTGTCTGTTCCTCTTAAGAGTGACATTTAA

Protein sequence

>MsG0280007868.01.T01

MFSQAGAQIGVCYGMMGNNLPPQREAIDLCKSNNIKRMRLYDPNQAALEALRNSGIELMLGVPNSDLQNIATNNDIAIQWVQKNVLNFYPSVKIKYIAVGNEVNPVGGNSQFAKFVLPAIQNIYQAIRAKNLHDQIKVSTAIDMTMIGTSYPPSKGSFKSDVRSYLDPIIGYLVYANAPLFANIYSYFSYKDNPKDISLQYALFTSPNVVVWDGSRGYQNLFDALLDSLHAAIDNTGIGFVKVVVSESGWPSDGGFATTYDNARIYLDNLIRHVKGGTPMRSGPIETYIFGLFDENQKNPELEKHFGVFYPNKQKKYPFGFEGKMDWEIDGTNLFNVSVPLKSDI*