Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008051.01.T01 | XP_024631484.1 | 82.857 | 420 | 66 | 3 | 1 | 417 | 1 | 417 | 0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008051.01.T01 | A0A072V6R1 | 75.481 | 416 | 94 | 3 | 1 | 414 | 1 | 410 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280008051.01 | MsG0280008055.01 | 0.940069 | 4.373565e-100 | 4.676423e-95 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008051.01.T01 | MTR_2g437240 | 75.481 | 416 | 94 | 3 | 1 | 414 | 1 | 410 | 0.0 | 612 |
| MsG0280008051.01.T01 | MTR_2g437200 | 76.296 | 405 | 86 | 3 | 1 | 402 | 1 | 398 | 0.0 | 602 |
| MsG0280008051.01.T01 | MTR_2g438020 | 76.263 | 396 | 91 | 2 | 24 | 417 | 57 | 451 | 0.0 | 597 |
| MsG0280008051.01.T01 | MTR_2g437170 | 62.768 | 419 | 104 | 6 | 14 | 415 | 20 | 403 | 1.22e-172 | 489 |
| MsG0280008051.01.T01 | MTR_2g437150 | 61.995 | 421 | 108 | 6 | 14 | 417 | 20 | 405 | 1.33e-172 | 489 |
| MsG0280008051.01.T01 | MTR_2g437120 | 63.527 | 414 | 104 | 5 | 14 | 416 | 20 | 397 | 7.44e-172 | 487 |
| MsG0280008051.01.T01 | MTR_2g437960 | 65.969 | 382 | 91 | 3 | 38 | 415 | 53 | 399 | 3.16e-171 | 485 |
| MsG0280008051.01.T01 | MTR_2g437960 | 65.969 | 382 | 91 | 3 | 38 | 415 | 53 | 399 | 3.44e-171 | 486 |
| MsG0280008051.01.T01 | MTR_2g437180 | 61.713 | 397 | 113 | 3 | 23 | 417 | 36 | 395 | 5.34e-165 | 469 |
| MsG0280008051.01.T01 | MTR_2g437100 | 60.570 | 421 | 110 | 6 | 3 | 402 | 10 | 395 | 1.30e-159 | 456 |
| MsG0280008051.01.T01 | MTR_2g076320 | 60.386 | 414 | 119 | 5 | 14 | 417 | 20 | 398 | 1.90e-158 | 452 |
| MsG0280008051.01.T01 | MTR_2g437160 | 56.845 | 431 | 133 | 6 | 3 | 416 | 15 | 409 | 4.76e-157 | 449 |
| MsG0280008051.01.T01 | MTR_2g438010 | 58.213 | 414 | 128 | 5 | 14 | 417 | 40 | 418 | 1.16e-155 | 446 |
| MsG0280008051.01.T01 | MTR_2g437990 | 59.662 | 414 | 121 | 6 | 14 | 417 | 20 | 397 | 5.17e-154 | 442 |
| MsG0280008051.01.T01 | MTR_2g437940 | 55.916 | 431 | 109 | 7 | 3 | 417 | 4 | 369 | 5.06e-146 | 420 |
| MsG0280008051.01.T01 | MTR_2g437130 | 54.545 | 418 | 141 | 7 | 3 | 417 | 15 | 386 | 6.23e-141 | 407 |
| MsG0280008051.01.T01 | MTR_2g437260 | 47.826 | 414 | 170 | 7 | 1 | 409 | 1 | 373 | 5.34e-123 | 362 |
| MsG0280008051.01.T01 | MTR_2g437080 | 48.492 | 398 | 162 | 5 | 21 | 414 | 24 | 382 | 1.22e-122 | 361 |
| MsG0280008051.01.T01 | MTR_2g437060 | 49.618 | 393 | 155 | 6 | 22 | 410 | 40 | 393 | 1.85e-122 | 361 |
| MsG0280008051.01.T01 | MTR_2g436440 | 48.731 | 394 | 159 | 5 | 25 | 414 | 34 | 388 | 8.67e-120 | 354 |
| MsG0280008051.01.T01 | MTR_2g437020 | 48.130 | 401 | 156 | 7 | 19 | 410 | 21 | 378 | 2.52e-118 | 350 |
| MsG0280008051.01.T01 | MTR_2g437040 | 47.870 | 399 | 161 | 7 | 22 | 414 | 25 | 382 | 2.75e-114 | 340 |
| MsG0280008051.01.T01 | MTR_2g437030 | 46.231 | 398 | 163 | 6 | 25 | 414 | 114 | 468 | 1.46e-111 | 335 |
| MsG0280008051.01.T01 | MTR_2g436400 | 45.669 | 381 | 165 | 5 | 30 | 406 | 39 | 381 | 5.42e-108 | 323 |
| MsG0280008051.01.T01 | MTR_4g119550 | 44.619 | 381 | 170 | 5 | 33 | 410 | 46 | 388 | 3.42e-106 | 319 |
| MsG0280008051.01.T01 | MTR_2g436460 | 46.174 | 379 | 157 | 5 | 31 | 403 | 40 | 377 | 2.66e-97 | 296 |
| MsG0280008051.01.T01 | MTR_4g120380 | 42.742 | 372 | 173 | 3 | 31 | 400 | 37 | 370 | 4.23e-90 | 277 |
| MsG0280008051.01.T01 | MTR_2g437160 | 71.892 | 185 | 50 | 1 | 234 | 416 | 134 | 318 | 1.42e-88 | 271 |
| MsG0280008051.01.T01 | MTR_2g437160 | 31.250 | 240 | 100 | 5 | 3 | 180 | 15 | 251 | 7.81e-22 | 95.9 |
| MsG0280008051.01.T01 | MTR_4g119580 | 42.021 | 376 | 176 | 5 | 29 | 400 | 33 | 370 | 3.83e-86 | 267 |
| MsG0280008051.01.T01 | MTR_4g120380 | 42.466 | 365 | 171 | 3 | 31 | 394 | 37 | 363 | 7.56e-86 | 268 |
| MsG0280008051.01.T01 | MTR_2g019810 | 42.893 | 401 | 170 | 9 | 11 | 402 | 9 | 359 | 2.80e-81 | 254 |
| MsG0280008051.01.T01 | MTR_2g019840 | 40.100 | 399 | 194 | 8 | 8 | 402 | 14 | 371 | 2.42e-77 | 245 |
| MsG0280008051.01.T01 | MTR_2g437090 | 54.971 | 171 | 75 | 1 | 247 | 415 | 1 | 171 | 1.30e-61 | 197 |
| MsG0280008051.01.T01 | MTR_3g085240 | 45.749 | 247 | 75 | 7 | 1 | 243 | 21 | 212 | 6.14e-48 | 164 |
| MsG0280008051.01.T01 | MTR_3g085240 | 57.778 | 90 | 19 | 2 | 306 | 393 | 176 | 248 | 2.20e-21 | 93.2 |
| MsG0280008051.01.T01 | MTR_4g119570 | 38.889 | 252 | 116 | 4 | 151 | 400 | 14 | 229 | 6.60e-48 | 164 |
| MsG0280008051.01.T01 | MTR_3g450500 | 30.541 | 370 | 213 | 6 | 24 | 387 | 24 | 355 | 5.89e-47 | 165 |
| MsG0280008051.01.T01 | MTR_4g007490 | 30.319 | 376 | 214 | 9 | 19 | 387 | 19 | 353 | 8.88e-42 | 151 |
| MsG0280008051.01.T01 | MTR_2g436370 | 37.755 | 196 | 82 | 4 | 30 | 223 | 38 | 195 | 1.92e-33 | 124 |
| MsG0280008051.01.T01 | MTR_8g081000 | 28.107 | 338 | 202 | 4 | 67 | 400 | 85 | 385 | 9.42e-32 | 125 |
| MsG0280008051.01.T01 | MTR_8g081000 | 28.107 | 338 | 202 | 4 | 67 | 400 | 85 | 385 | 9.53e-32 | 125 |
| MsG0280008051.01.T01 | MTR_8g081000 | 27.859 | 341 | 199 | 5 | 67 | 400 | 85 | 385 | 1.17e-31 | 125 |
| MsG0280008051.01.T01 | MTR_8g080990 | 28.614 | 332 | 196 | 5 | 69 | 396 | 74 | 368 | 8.41e-30 | 119 |
| MsG0280008051.01.T01 | MTR_4g049400 | 41.104 | 163 | 78 | 4 | 1 | 145 | 2 | 164 | 4.67e-27 | 108 |
| MsG0280008051.01.T01 | MTR_2g436380 | 43.434 | 99 | 53 | 1 | 247 | 345 | 1 | 96 | 6.65e-18 | 84.0 |
| MsG0280008051.01.T01 | MTR_4g070060 | 23.926 | 326 | 220 | 10 | 48 | 356 | 251 | 565 | 3.36e-11 | 65.5 |
| MsG0280008051.01.T01 | MTR_8g012210 | 21.795 | 312 | 227 | 8 | 118 | 416 | 63 | 370 | 6.12e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008051.01.T01 | AT5G07900 | 31.793 | 368 | 205 | 5 | 40 | 399 | 70 | 399 | 1.55e-55 | 189 |
| MsG0280008051.01.T01 | AT1G21150 | 30.878 | 353 | 206 | 3 | 40 | 389 | 57 | 374 | 1.06e-43 | 157 |
| MsG0280008051.01.T01 | AT1G21150 | 30.878 | 353 | 206 | 3 | 40 | 389 | 121 | 438 | 3.93e-43 | 157 |
| MsG0280008051.01.T01 | AT1G21150 | 30.252 | 357 | 211 | 3 | 36 | 389 | 17 | 338 | 1.02e-42 | 154 |
| MsG0280008051.01.T01 | AT1G62120 | 29.529 | 403 | 211 | 7 | 31 | 396 | 48 | 414 | 2.65e-36 | 138 |
| MsG0280008051.01.T01 | AT1G61980 | 29.262 | 393 | 203 | 9 | 40 | 395 | 53 | 407 | 3.36e-36 | 137 |
| MsG0280008051.01.T01 | AT1G61980 | 29.262 | 393 | 203 | 9 | 40 | 395 | 53 | 407 | 3.36e-36 | 137 |
| MsG0280008051.01.T01 | AT1G61980 | 29.262 | 393 | 203 | 9 | 40 | 395 | 53 | 407 | 3.36e-36 | 137 |
| MsG0280008051.01.T01 | AT1G61990 | 27.506 | 389 | 198 | 6 | 40 | 389 | 53 | 396 | 5.13e-35 | 134 |
| MsG0280008051.01.T01 | AT1G61990 | 27.506 | 389 | 198 | 6 | 40 | 389 | 53 | 396 | 5.13e-35 | 134 |
| MsG0280008051.01.T01 | AT1G61970 | 27.577 | 388 | 200 | 9 | 40 | 387 | 53 | 399 | 2.52e-33 | 129 |
| MsG0280008051.01.T01 | AT1G61970 | 27.577 | 388 | 200 | 9 | 40 | 387 | 53 | 399 | 2.52e-33 | 129 |
| MsG0280008051.01.T01 | AT1G61970 | 27.577 | 388 | 200 | 9 | 40 | 387 | 53 | 399 | 2.52e-33 | 129 |
| MsG0280008051.01.T01 | AT1G61970 | 27.577 | 388 | 200 | 9 | 40 | 387 | 53 | 399 | 2.52e-33 | 129 |
| MsG0280008051.01.T01 | AT1G61970 | 27.577 | 388 | 200 | 9 | 40 | 387 | 53 | 399 | 2.52e-33 | 129 |
| MsG0280008051.01.T01 | AT1G61970 | 27.577 | 388 | 200 | 9 | 40 | 387 | 53 | 399 | 2.52e-33 | 129 |
| MsG0280008051.01.T01 | AT1G61970 | 27.577 | 388 | 200 | 9 | 40 | 387 | 53 | 399 | 2.52e-33 | 129 |
| MsG0280008051.01.T01 | AT5G64950 | 26.790 | 377 | 228 | 7 | 25 | 389 | 22 | 362 | 1.33e-30 | 121 |
| MsG0280008051.01.T01 | AT3G46950 | 30.794 | 315 | 169 | 9 | 11 | 319 | 20 | 291 | 1.62e-29 | 119 |
| MsG0280008051.01.T01 | AT1G61960 | 26.619 | 417 | 249 | 13 | 40 | 412 | 53 | 456 | 3.33e-27 | 113 |
| MsG0280008051.01.T01 | AT1G62150 | 24.566 | 403 | 252 | 11 | 40 | 398 | 59 | 453 | 5.60e-27 | 112 |
| MsG0280008051.01.T01 | AT1G62085 | 25.581 | 387 | 246 | 8 | 40 | 387 | 56 | 439 | 1.66e-26 | 111 |
| MsG0280008051.01.T01 | AT1G62085 | 25.581 | 387 | 246 | 8 | 40 | 387 | 56 | 439 | 1.66e-26 | 111 |
| MsG0280008051.01.T01 | AT5G23930 | 27.390 | 387 | 239 | 10 | 40 | 391 | 56 | 435 | 1.57e-22 | 99.8 |
| MsG0280008051.01.T01 | AT1G62110 | 30.824 | 279 | 156 | 6 | 40 | 317 | 53 | 295 | 2.85e-22 | 99.0 |
| MsG0280008051.01.T01 | AT1G56380 | 23.499 | 383 | 258 | 12 | 34 | 396 | 21 | 388 | 8.68e-17 | 82.0 |
| MsG0280008051.01.T01 | AT1G56380 | 23.499 | 383 | 258 | 12 | 34 | 396 | 10 | 377 | 8.79e-17 | 82.0 |
| MsG0280008051.01.T01 | AT2G44020 | 22.819 | 298 | 221 | 3 | 74 | 365 | 147 | 441 | 1.71e-13 | 72.4 |
| MsG0280008051.01.T01 | AT1G79220 | 21.788 | 358 | 226 | 11 | 73 | 416 | 82 | 399 | 7.56e-11 | 63.9 |
Find 72 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAATTTGATGGCTGATTT+TGG | 0.115073 | 2:-24857280 | MsG0280008051.01.T01:CDS |
| GCCATCTATATTTGGTTTAA+AGG | 0.141804 | 2:-24857218 | MsG0280008051.01.T01:CDS |
| GATCCTAAGTTGACTACTTT+TGG | 0.155784 | 2:-24857154 | MsG0280008051.01.T01:CDS |
| CAGTCAAGGCCATCTATATT+TGG | 0.179813 | 2:-24857226 | MsG0280008051.01.T01:CDS |
| AAACTATAACAAAACATATT+TGG | 0.239296 | 2:+24856920 | None:intergenic |
| TTGGAGGAAGTTAAGTGTTT+AGG | 0.257551 | 2:-24857181 | MsG0280008051.01.T01:CDS |
| TGGAGGAAGTTAAGTGTTTA+GGG | 0.262883 | 2:-24857180 | MsG0280008051.01.T01:CDS |
| TCCTACCTCATCGGCAAATT+CGG | 0.270473 | 2:-24857805 | MsG0280008051.01.T01:CDS |
| TCTCTGCTTAATTCGATATT+CGG | 0.275206 | 2:-24857344 | MsG0280008051.01.T01:CDS |
| AGACCAACCCCATTTCTTAA+AGG | 0.307244 | 2:+24857072 | None:intergenic |
| TTTGTTATAGTTTACATAAA+AGG | 0.315414 | 2:-24856910 | MsG0280008051.01.T01:CDS |
| GCAGAGAATGGTGTCCTTGC+TGG | 0.321424 | 2:+24857360 | None:intergenic |
| CTTGAGCAAGTTTGTCTTGA+AGG | 0.325723 | 2:-24856786 | MsG0280008051.01.T01:CDS |
| AAAGGATTTGATTAAGTCAT+TGG | 0.335353 | 2:-24857200 | MsG0280008051.01.T01:CDS |
| CTCTGCTTAATTCGATATTC+GGG | 0.336261 | 2:-24857343 | MsG0280008051.01.T01:CDS |
| AAACTAATCTGTAAAATTGC+AGG | 0.337554 | 2:+24857433 | None:intergenic |
| TGTAGGTAACCCTAAGTTCT+TGG | 0.343348 | 2:-24857548 | MsG0280008051.01.T01:CDS |
| AAGCTTAATTCCAAGAACTT+AGG | 0.347303 | 2:+24857538 | None:intergenic |
| AAGTTGATACCTTTAAGAAA+TGG | 0.365182 | 2:-24857081 | MsG0280008051.01.T01:CDS |
| AGTTGATACCTTTAAGAAAT+GGG | 0.365271 | 2:-24857080 | MsG0280008051.01.T01:CDS |
| ATTGAAGCCAACATCAAATT+AGG | 0.374513 | 2:+24857016 | None:intergenic |
| ATATCTTCAGAATAAGTAAA+TGG | 0.375368 | 2:+24856812 | None:intergenic |
| AAGAAGTTGAGAACTGAATC+TGG | 0.386478 | 2:+24857721 | None:intergenic |
| AATTGATATTAGCCACAATA+AGG | 0.389243 | 2:+24857296 | None:intergenic |
| TGTGGCTAATATCAATTTGA+TGG | 0.392207 | 2:-24857290 | MsG0280008051.01.T01:CDS |
| AGCTTAATTCCAAGAACTTA+GGG | 0.393617 | 2:+24857539 | None:intergenic |
| ATCAGATGAAGAAGCGCCTT+TGG | 0.403170 | 2:+24857480 | None:intergenic |
| TCCTTTAAACCAAATATAGA+TGG | 0.404648 | 2:+24857217 | None:intergenic |
| GTCAGAGGAAGAAGCACCTT+TGG | 0.409246 | 2:+24857585 | None:intergenic |
| TCAATTAGGTTGGGATTCCT+TGG | 0.416390 | 2:-24856957 | MsG0280008051.01.T01:CDS |
| AATTGCAAAACTGAGGCTCT+TGG | 0.425012 | 2:+24856881 | None:intergenic |
| TTGGGTCAATCAATTAGGTT+GGG | 0.436055 | 2:-24856966 | MsG0280008051.01.T01:CDS |
| ACATACGCAATATCATCAAA+AGG | 0.441484 | 2:-24857672 | MsG0280008051.01.T01:CDS |
| GACATTGTCCGCATGGTTGT+AGG | 0.452422 | 2:-24857565 | MsG0280008051.01.T01:CDS |
| GAAATCACATATTAAGTGAA+TGG | 0.476870 | 2:+24856689 | None:intergenic |
| TTTGGGTCAATCAATTAGGT+TGG | 0.477232 | 2:-24856967 | MsG0280008051.01.T01:CDS |
| GTTGCTTTGGTAGCCAAGAA+AGG | 0.483813 | 2:-24857130 | MsG0280008051.01.T01:CDS |
| ATGAGGTAGGAAACGGTGAA+TGG | 0.498531 | 2:+24857817 | None:intergenic |
| TTCCTCTGACATTGTCCGCA+TGG | 0.499055 | 2:-24857572 | MsG0280008051.01.T01:CDS |
| AACTAATCTGTAAAATTGCA+GGG | 0.522503 | 2:+24857434 | None:intergenic |
| ATATCAGCCTAATTTGATGT+TGG | 0.524802 | 2:-24857023 | MsG0280008051.01.T01:CDS |
| CATACGCAATATCATCAAAA+GGG | 0.533856 | 2:-24857671 | MsG0280008051.01.T01:CDS |
| ATTAGCCACAATAAGGCGAT+AGG | 0.536156 | 2:+24857303 | None:intergenic |
| TGAGGTAGGAAACGGTGAAT+GGG | 0.540099 | 2:+24857818 | None:intergenic |
| TTGCAAGTTTGCTTCAGTCA+AGG | 0.549052 | 2:-24857240 | MsG0280008051.01.T01:CDS |
| TGGAAATTTAGCAAGTGCCA+AGG | 0.550727 | 2:+24856940 | None:intergenic |
| GTTGATACCTTTAAGAAATG+GGG | 0.553181 | 2:-24857079 | MsG0280008051.01.T01:CDS |
| CGGCAAATTCGGATTCTCGC+AGG | 0.558102 | 2:-24857794 | MsG0280008051.01.T01:CDS |
| GGATTTGATTAAGTCATTGG+AGG | 0.561173 | 2:-24857197 | MsG0280008051.01.T01:CDS |
| AAATTTGAGAGAAAATAGGA+AGG | 0.566350 | 2:+24857867 | None:intergenic |
| ATATCGAATTAAGCAGAGAA+TGG | 0.572002 | 2:+24857348 | None:intergenic |
| AAATCCCTATCGCCTTATTG+TGG | 0.576235 | 2:-24857308 | MsG0280008051.01.T01:CDS |
| TTCACCGTTTCCTACCTCAT+CGG | 0.587137 | 2:-24857814 | MsG0280008051.01.T01:CDS |
| ACCCCAAAAGTAGTCAACTT+AGG | 0.587643 | 2:+24857151 | None:intergenic |
| ATACCTTTAAGAAATGGGGT+TGG | 0.587688 | 2:-24857075 | MsG0280008051.01.T01:CDS |
| GAGCAAGTTTGTCTTGAAGG+AGG | 0.590871 | 2:-24856783 | MsG0280008051.01.T01:CDS |
| TAGGTTCTTTAATTCCAGCA+AGG | 0.604223 | 2:-24857374 | MsG0280008051.01.T01:CDS |
| TTAGCCACAATAAGGCGATA+GGG | 0.609256 | 2:+24857304 | None:intergenic |
| ATATCATCAAAAGGGAACCA+TGG | 0.612508 | 2:-24857663 | MsG0280008051.01.T01:CDS |
| TTTGCCGATGAGGTAGGAAA+CGG | 0.624046 | 2:+24857810 | None:intergenic |
| CAAAAGAAATTGCAAAACTG+AGG | 0.625549 | 2:+24856874 | None:intergenic |
| AGAATCCGAATTTGCCGATG+AGG | 0.626280 | 2:+24857800 | None:intergenic |
| TCCGAATTTGCCGATGAGGT+AGG | 0.627507 | 2:+24857804 | None:intergenic |
| GTATCGCAGGAAAGAATCCA+TGG | 0.639912 | 2:+24857646 | None:intergenic |
| AATTTGAGAGAAAATAGGAA+GGG | 0.640674 | 2:+24857868 | None:intergenic |
| GTGTGAATGTGAATTTGAAG+TGG | 0.648017 | 2:+24857840 | None:intergenic |
| AACCATGCGGACAATGTCAG+AGG | 0.652596 | 2:+24857570 | None:intergenic |
| AATGAAACTTGCATACACAA+AGG | 0.663379 | 2:-24856726 | MsG0280008051.01.T01:CDS |
| CTATCTATTAAAGTTATACG+AGG | 0.674399 | 2:-24856753 | MsG0280008051.01.T01:CDS |
| GATATTGCGTATGTGTGAGT+CGG | 0.676436 | 2:+24857681 | None:intergenic |
| GCATACACAAAGGAGAACAA+TGG | 0.692068 | 2:-24856716 | MsG0280008051.01.T01:CDS |
| TAGGGTTACCTACAACCATG+CGG | 0.768933 | 2:+24857557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATAACAAAACATATT+TGG | + | Chr2:24857714-24857733 | None:intergenic | 15.0% |
| !! | TATTTAACAATTCAAAAAGA+GGG | + | Chr2:24857239-24857258 | None:intergenic | 15.0% |
| !!! | TTTGTTATAGTTTACATAAA+AGG | - | Chr2:24857721-24857740 | MsG0280008051.01.T01:CDS | 15.0% |
| !! | AAGGTTTAAGTAAAAAACTT+TGG | - | Chr2:24857520-24857539 | MsG0280008051.01.T01:CDS | 20.0% |
| !! | AGAAAAATTTGAGAGAAAAT+AGG | + | Chr2:24856771-24856790 | None:intergenic | 20.0% |
| !! | AGATTAAAAACTGAAACTTT+GGG | + | Chr2:24857026-24857045 | None:intergenic | 20.0% |
| !! | AGGTTTAAGTAAAAAACTTT+GGG | - | Chr2:24857521-24857540 | MsG0280008051.01.T01:CDS | 20.0% |
| !! | ATATCTTCAGAATAAGTAAA+TGG | + | Chr2:24857822-24857841 | None:intergenic | 20.0% |
| !! | CTATTTAACAATTCAAAAAG+AGG | + | Chr2:24857240-24857259 | None:intergenic | 20.0% |
| !!! | CTCTTTTTGAATTGTTAAAT+AGG | - | Chr2:24857238-24857257 | MsG0280008051.01.T01:CDS | 20.0% |
| !!! | TTTGAATATTTTCTATCCAA+AGG | - | Chr2:24857135-24857154 | MsG0280008051.01.T01:CDS | 20.0% |
| !!! | TTTTTTACTTAAACCTTTCT+TGG | + | Chr2:24857517-24857536 | None:intergenic | 20.0% |
| ! | AAACTAATCTGTAAAATTGC+AGG | + | Chr2:24857201-24857220 | None:intergenic | 25.0% |
| ! | AAAGGATTTGATTAAGTCAT+TGG | - | Chr2:24857431-24857450 | MsG0280008051.01.T01:CDS | 25.0% |
| ! | AAATTTGAGAGAAAATAGGA+AGG | + | Chr2:24856767-24856786 | None:intergenic | 25.0% |
| ! | AACTAATCTGTAAAATTGCA+GGG | + | Chr2:24857200-24857219 | None:intergenic | 25.0% |
| ! | AATTGATATTAGCCACAATA+AGG | + | Chr2:24857338-24857357 | None:intergenic | 25.0% |
| ! | AATTTGAGAGAAAATAGGAA+GGG | + | Chr2:24856766-24856785 | None:intergenic | 25.0% |
| ! | CTATCTATTAAAGTTATACG+AGG | - | Chr2:24857878-24857897 | MsG0280008051.01.T01:CDS | 25.0% |
| ! | CTCAACTTCTTAAAAAATCA+CGG | - | Chr2:24856922-24856941 | MsG0280008051.01.T01:CDS | 25.0% |
| ! | GAGATTAAAAACTGAAACTT+TGG | + | Chr2:24857027-24857046 | None:intergenic | 25.0% |
| ! | TCCTTTAAACCAAATATAGA+TGG | + | Chr2:24857417-24857436 | None:intergenic | 25.0% |
| !! | AGTTGATACCTTTAAGAAAT+GGG | - | Chr2:24857551-24857570 | MsG0280008051.01.T01:CDS | 25.0% |
| !! | TTGCAATTTCTTTTGATGAA+AGG | - | Chr2:24857765-24857784 | MsG0280008051.01.T01:CDS | 25.0% |
| !! | TTTCAGTTTTTAATCTCCAA+AGG | - | Chr2:24857030-24857049 | MsG0280008051.01.T01:CDS | 25.0% |
| !!! | AAGTTGATACCTTTAAGAAA+TGG | - | Chr2:24857550-24857569 | MsG0280008051.01.T01:CDS | 25.0% |
| !!! | TGCAATTTTACAGATTAGTT+TGG | - | Chr2:24857200-24857219 | MsG0280008051.01.T01:CDS | 25.0% |
| AAGCTTAATTCCAAGAACTT+AGG | + | Chr2:24857096-24857115 | None:intergenic | 30.0% | |
| AATGAAACTTGCATACACAA+AGG | - | Chr2:24857905-24857924 | MsG0280008051.01.T01:CDS | 30.0% | |
| ACATACGCAATATCATCAAA+AGG | - | Chr2:24856959-24856978 | MsG0280008051.01.T01:CDS | 30.0% | |
| AGCTTAATTCCAAGAACTTA+GGG | + | Chr2:24857095-24857114 | None:intergenic | 30.0% | |
| ATATCAGCCTAATTTGATGT+TGG | - | Chr2:24857608-24857627 | MsG0280008051.01.T01:CDS | 30.0% | |
| ATATCGAATTAAGCAGAGAA+TGG | + | Chr2:24857286-24857305 | None:intergenic | 30.0% | |
| ATTGAAGCCAACATCAAATT+AGG | + | Chr2:24857618-24857637 | None:intergenic | 30.0% | |
| CAAAAGAAATTGCAAAACTG+AGG | + | Chr2:24857760-24857779 | None:intergenic | 30.0% | |
| CATACGCAATATCATCAAAA+GGG | - | Chr2:24856960-24856979 | MsG0280008051.01.T01:CDS | 30.0% | |
| TCTCTGCTTAATTCGATATT+CGG | - | Chr2:24857287-24857306 | MsG0280008051.01.T01:CDS | 30.0% | |
| TGTGGCTAATATCAATTTGA+TGG | - | Chr2:24857341-24857360 | MsG0280008051.01.T01:CDS | 30.0% | |
| ! | GCCATCTATATTTGGTTTAA+AGG | - | Chr2:24857413-24857432 | MsG0280008051.01.T01:CDS | 30.0% |
| ! | GTTGATACCTTTAAGAAATG+GGG | - | Chr2:24857552-24857571 | MsG0280008051.01.T01:CDS | 30.0% |
| !! | ATCAATTTGATGGCTGATTT+TGG | - | Chr2:24857351-24857370 | MsG0280008051.01.T01:CDS | 30.0% |
| !! | ATCCTAAGTTGACTACTTTT+GGG | - | Chr2:24857478-24857497 | MsG0280008051.01.T01:CDS | 30.0% |
| !!! | AGTTTTTGGGTCAATCAATT+AGG | - | Chr2:24857660-24857679 | MsG0280008051.01.T01:CDS | 30.0% |
| !!! | GGTTTTGAAATAAAGCTCTT+TGG | + | Chr2:24856881-24856900 | None:intergenic | 30.0% |
| !!! | TAGTTTGCTGATGAGTTTTT+GGG | - | Chr2:24857647-24857666 | MsG0280008051.01.T01:CDS | 30.0% |
| !!! | TTAGTTTGCTGATGAGTTTT+TGG | - | Chr2:24857646-24857665 | MsG0280008051.01.T01:CDS | 30.0% |
| AAGAAGTTGAGAACTGAATC+TGG | + | Chr2:24856913-24856932 | None:intergenic | 35.0% | |
| ATATCATCAAAAGGGAACCA+TGG | - | Chr2:24856968-24856987 | MsG0280008051.01.T01:CDS | 35.0% | |
| CTCTGCTTAATTCGATATTC+GGG | - | Chr2:24857288-24857307 | MsG0280008051.01.T01:CDS | 35.0% | |
| GGATTTGATTAAGTCATTGG+AGG | - | Chr2:24857434-24857453 | MsG0280008051.01.T01:CDS | 35.0% | |
| GTGTGAATGTGAATTTGAAG+TGG | + | Chr2:24856794-24856813 | None:intergenic | 35.0% | |
| TAGGTTCTTTAATTCCAGCA+AGG | - | Chr2:24857257-24857276 | MsG0280008051.01.T01:CDS | 35.0% | |
| TGGAGGAAGTTAAGTGTTTA+GGG | - | Chr2:24857451-24857470 | MsG0280008051.01.T01:CDS | 35.0% | |
| TTGGAGGAAGTTAAGTGTTT+AGG | - | Chr2:24857450-24857469 | MsG0280008051.01.T01:CDS | 35.0% | |
| TTGGGTCAATCAATTAGGTT+GGG | - | Chr2:24857665-24857684 | MsG0280008051.01.T01:CDS | 35.0% | |
| TTTGGGTCAATCAATTAGGT+TGG | - | Chr2:24857664-24857683 | MsG0280008051.01.T01:CDS | 35.0% | |
| ! | ATACCTTTAAGAAATGGGGT+TGG | - | Chr2:24857556-24857575 | MsG0280008051.01.T01:CDS | 35.0% |
| !! | GATCCTAAGTTGACTACTTT+TGG | - | Chr2:24857477-24857496 | MsG0280008051.01.T01:CDS | 35.0% |
| !! | TCCTAAGTTGACTACTTTTG+GGG | - | Chr2:24857479-24857498 | MsG0280008051.01.T01:CDS | 35.0% |
| !!! | AACTGAATCTGGTTTTTGTG+AGG | + | Chr2:24856902-24856921 | None:intergenic | 35.0% |
| AATTGCAAAACTGAGGCTCT+TGG | + | Chr2:24857753-24857772 | None:intergenic | 40.0% | |
| ACCCCAAAAGTAGTCAACTT+AGG | + | Chr2:24857483-24857502 | None:intergenic | 40.0% | |
| AGACCAACCCCATTTCTTAA+AGG | + | Chr2:24857562-24857581 | None:intergenic | 40.0% | |
| ATTAGCCACAATAAGGCGAT+AGG | + | Chr2:24857331-24857350 | None:intergenic | 40.0% | |
| CAGTCAAGGCCATCTATATT+TGG | - | Chr2:24857405-24857424 | MsG0280008051.01.T01:CDS | 40.0% | |
| CTTGAGCAAGTTTGTCTTGA+AGG | - | Chr2:24857845-24857864 | MsG0280008051.01.T01:CDS | 40.0% | |
| GATATTGCGTATGTGTGAGT+CGG | + | Chr2:24856953-24856972 | None:intergenic | 40.0% | |
| GCATACACAAAGGAGAACAA+TGG | - | Chr2:24857915-24857934 | MsG0280008051.01.T01:CDS | 40.0% | |
| TGGAAATTTAGCAAGTGCCA+AGG | + | Chr2:24857694-24857713 | None:intergenic | 40.0% | |
| TGTAGGTAACCCTAAGTTCT+TGG | - | Chr2:24857083-24857102 | MsG0280008051.01.T01:CDS | 40.0% | |
| TTAGCCACAATAAGGCGATA+GGG | + | Chr2:24857330-24857349 | None:intergenic | 40.0% | |
| ! | AAATCCCTATCGCCTTATTG+TGG | - | Chr2:24857323-24857342 | MsG0280008051.01.T01:CDS | 40.0% |
| ! | TTGCAAGTTTGCTTCAGTCA+AGG | - | Chr2:24857391-24857410 | MsG0280008051.01.T01:CDS | 40.0% |
| !! | ACTTTGGGAGAATCGTTTTG+TGG | + | Chr2:24857011-24857030 | None:intergenic | 40.0% |
| !! | CTTTGGGAGAATCGTTTTGT+GGG | + | Chr2:24857010-24857029 | None:intergenic | 40.0% |
| !! | TCAATTAGGTTGGGATTCCT+TGG | - | Chr2:24857674-24857693 | MsG0280008051.01.T01:CDS | 40.0% |
| AGAATCCGAATTTGCCGATG+AGG | + | Chr2:24856834-24856853 | None:intergenic | 45.0% | |
| ATGAGGTAGGAAACGGTGAA+TGG | + | Chr2:24856817-24856836 | None:intergenic | 45.0% | |
| GAGCAAGTTTGTCTTGAAGG+AGG | - | Chr2:24857848-24857867 | MsG0280008051.01.T01:CDS | 45.0% | |
| GTATCGCAGGAAAGAATCCA+TGG | + | Chr2:24856988-24857007 | None:intergenic | 45.0% | |
| TAGGGTTACCTACAACCATG+CGG | + | Chr2:24857077-24857096 | None:intergenic | 45.0% | |
| TCCTACCTCATCGGCAAATT+CGG | - | Chr2:24856826-24856845 | MsG0280008051.01.T01:CDS | 45.0% | |
| TGAGGTAGGAAACGGTGAAT+GGG | + | Chr2:24856816-24856835 | None:intergenic | 45.0% | |
| TTCACCGTTTCCTACCTCAT+CGG | - | Chr2:24856817-24856836 | MsG0280008051.01.T01:CDS | 45.0% | |
| TTTGCCGATGAGGTAGGAAA+CGG | + | Chr2:24856824-24856843 | None:intergenic | 45.0% | |
| ! | GTTGCTTTGGTAGCCAAGAA+AGG | - | Chr2:24857501-24857520 | MsG0280008051.01.T01:CDS | 45.0% |
| !! | AATCGTTTTGTGGGTATCGC+AGG | + | Chr2:24857001-24857020 | None:intergenic | 45.0% |
| !! | ATCAGATGAAGAAGCGCCTT+TGG | + | Chr2:24857154-24857173 | None:intergenic | 45.0% |
| !!! | GACTACTTTTGGGGTTGCTT+TGG | - | Chr2:24857488-24857507 | MsG0280008051.01.T01:CDS | 45.0% |
| AACCATGCGGACAATGTCAG+AGG | + | Chr2:24857064-24857083 | None:intergenic | 50.0% | |
| GACATTGTCCGCATGGTTGT+AGG | - | Chr2:24857066-24857085 | MsG0280008051.01.T01:CDS | 50.0% | |
| TCCGAATTTGCCGATGAGGT+AGG | + | Chr2:24856830-24856849 | None:intergenic | 50.0% | |
| TTCCTCTGACATTGTCCGCA+TGG | - | Chr2:24857059-24857078 | MsG0280008051.01.T01:CDS | 50.0% | |
| !! | GTCAGAGGAAGAAGCACCTT+TGG | + | Chr2:24857049-24857068 | None:intergenic | 50.0% |
| CGGCAAATTCGGATTCTCGC+AGG | - | Chr2:24856837-24856856 | MsG0280008051.01.T01:CDS | 55.0% | |
| GCAGAGAATGGTGTCCTTGC+TGG | + | Chr2:24857274-24857293 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 24856700 | 24857953 | 24856700 | ID=MsG0280008051.01;Name=MsG0280008051.01 |
| Chr2 | mRNA | 24856700 | 24857953 | 24856700 | ID=MsG0280008051.01.T01;Parent=MsG0280008051.01;Name=MsG0280008051.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|417 |
| Chr2 | exon | 24856700 | 24857953 | 24856700 | ID=MsG0280008051.01.T01:exon:34856;Parent=MsG0280008051.01.T01 |
| Chr2 | CDS | 24856700 | 24857953 | 24856700 | ID=MsG0280008051.01.T01:cds;Parent=MsG0280008051.01.T01 |
| Gene Sequence |
| Protein sequence |
