AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008174.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008174.01.T01 MTR_2g031910 64.550 189 33 1 107 295 2 156 3.40e-78 242
MsG0280008174.01.T01 MTR_4g031410 61.616 198 47 2 104 300 2 171 9.30e-75 235
MsG0280008174.01.T01 MTR_4g031755 61.616 198 47 2 104 300 2 171 9.30e-75 235
MsG0280008174.01.T01 MTR_3g050340 44.012 334 91 6 100 430 84 324 1.36e-67 220
MsG0280008174.01.T01 MTR_4g031785 58.763 194 48 2 104 296 2 164 2.45e-66 216
MsG0280008174.01.T01 MTR_6g045237 52.941 187 86 2 102 287 106 291 4.28e-66 219
MsG0280008174.01.T01 MTR_2g013990 43.827 324 75 9 110 429 32 252 1.92e-65 214
MsG0280008174.01.T01 MTR_0012s0140 69.784 139 42 0 100 238 111 249 5.63e-63 213
MsG0280008174.01.T01 MTR_8g445450 68.613 137 43 0 100 236 70 206 1.28e-60 199
MsG0280008174.01.T01 MTR_0062s0020 92.000 100 8 0 1 100 183 282 1.47e-60 199
MsG0280008174.01.T01 MTR_4g096760 44.554 202 89 2 103 301 114 295 3.01e-54 188
MsG0280008174.01.T01 MTR_0195s0020 37.543 293 134 8 102 382 113 368 2.09e-50 178
MsG0280008174.01.T01 MTR_6g038330 74.312 109 28 0 111 219 1 109 1.12e-49 170
MsG0280008174.01.T01 MTR_4g031470 69.167 120 36 1 178 296 49 168 1.72e-48 164
MsG0280008174.01.T01 MTR_7g111460 45.732 164 89 0 101 264 95 258 2.52e-48 175
MsG0280008174.01.T01 MTR_0195s0010 54.745 137 62 0 102 238 113 249 1.05e-47 164
MsG0280008174.01.T01 MTR_3g079805 54.074 135 62 0 107 241 59 193 1.47e-46 162
MsG0280008174.01.T01 MTR_1024s0010 58.197 122 51 0 103 224 5 126 3.66e-46 157
MsG0280008174.01.T01 MTR_7g445700 43.038 158 90 0 103 260 105 262 1.05e-45 167
MsG0280008174.01.T01 MTR_7g063160 54.264 129 59 0 103 231 48 176 6.06e-45 161
MsG0280008174.01.T01 MTR_6g022050 54.615 130 59 0 103 232 106 235 1.82e-44 155
MsG0280008174.01.T01 MTR_6g471850 53.788 132 57 1 115 246 90 217 3.69e-44 161
MsG0280008174.01.T01 MTR_1g040935 50.704 142 70 0 114 255 3 144 3.56e-43 155
MsG0280008174.01.T01 MTR_1g062320 43.353 173 70 2 111 279 1 149 7.07e-43 155
MsG0280008174.01.T01 MTR_8g040870 45.509 167 70 3 131 294 37 185 9.10e-43 150
MsG0280008174.01.T01 MTR_6g061130 34.516 310 156 9 145 433 68 351 6.23e-42 152
MsG0280008174.01.T01 MTR_1g041005 51.471 136 66 0 114 249 60 195 6.67e-42 150
MsG0280008174.01.T01 MTR_1g032820 47.407 135 71 0 111 245 1 135 1.43e-39 141
MsG0280008174.01.T01 MTR_8g466790 52.239 134 64 0 115 248 81 214 2.49e-39 141
MsG0280008174.01.T01 MTR_2g438650 46.809 141 75 0 102 242 130 270 3.23e-38 144
MsG0280008174.01.T01 MTR_1g007020 30.058 346 188 9 96 422 23 333 6.25e-38 142
MsG0280008174.01.T01 MTR_1g032900 67.368 95 31 0 208 302 159 253 5.83e-37 141
MsG0280008174.01.T01 MTR_3g464250 51.695 118 57 0 102 219 62 179 7.20e-37 135
MsG0280008174.01.T01 MTR_3g062250 45.312 128 70 0 102 229 75 202 7.48e-35 136
MsG0280008174.01.T01 MTR_5g037520 43.836 146 79 1 102 244 113 258 7.73e-35 134
MsG0280008174.01.T01 MTR_1g090997 47.500 120 63 0 127 246 2 121 1.83e-34 133
MsG0280008174.01.T01 MTR_4g046100 55.963 109 48 0 129 237 1 109 2.60e-34 129
MsG0280008174.01.T01 MTR_2g032880 38.251 183 76 4 102 280 72 221 2.98e-34 133
MsG0280008174.01.T01 MTR_8g104170 33.663 202 130 1 102 299 33 234 2.60e-33 129
MsG0280008174.01.T01 MTR_8g045340 38.710 186 83 2 103 288 36 190 4.24e-33 129
MsG0280008174.01.T01 MTR_3g086820 40.940 149 72 1 102 250 55 187 8.48e-32 125
MsG0280008174.01.T01 MTR_1g093780 40.580 138 63 1 127 264 89 207 8.86e-32 127
MsG0280008174.01.T01 MTR_0063s0100 76.389 72 17 0 100 171 142 213 3.25e-31 122
MsG0280008174.01.T01 MTR_0488s0020 28.623 276 124 7 63 310 103 333 3.97e-31 125
MsG0280008174.01.T01 MTR_0014s0120 36.458 192 91 3 61 246 60 226 4.31e-31 123
MsG0280008174.01.T01 MTR_7g070750 62.637 91 34 0 111 201 1 91 4.49e-31 120
MsG0280008174.01.T01 MTR_7g056053 49.074 108 55 0 162 269 24 131 5.88e-31 122
MsG0280008174.01.T01 MTR_0062s0090 54.639 97 41 1 1 97 184 277 5.89e-31 120
MsG0280008174.01.T01 MTR_0062s0040 54.639 97 41 1 1 97 184 277 5.89e-31 120
MsG0280008174.01.T01 MTR_0062s0060 54.639 97 41 1 1 97 184 277 5.89e-31 120
MsG0280008174.01.T01 MTR_6g043680 36.111 180 98 2 94 270 40 205 2.52e-30 117
MsG0280008174.01.T01 MTR_4g045863 35.514 214 111 5 90 296 10 203 2.81e-30 121
MsG0280008174.01.T01 MTR_5g060720 55.319 94 42 0 117 210 64 157 3.82e-30 120
MsG0280008174.01.T01 MTR_4g093740 33.696 184 89 3 100 278 96 251 1.42e-29 120
MsG0280008174.01.T01 MTR_5g085370 44.348 115 64 0 129 243 1 115 2.26e-29 119
MsG0280008174.01.T01 MTR_4g035630 36.898 187 100 4 63 236 48 229 3.99e-29 117
MsG0280008174.01.T01 MTR_7g013110 62.637 91 19 1 100 190 110 185 4.34e-29 119
MsG0280008174.01.T01 MTR_5g024590 34.615 182 99 3 100 280 2 164 5.40e-28 111
MsG0280008174.01.T01 MTR_8g104770 34.356 163 89 2 90 234 83 245 6.75e-27 109
MsG0280008174.01.T01 MTR_4g108010 48.387 93 48 0 100 192 98 190 2.69e-25 102
MsG0280008174.01.T01 MTR_7g063170 58.667 75 31 0 115 189 35 109 4.25e-25 99.4
MsG0280008174.01.T01 MTR_5g046930 42.373 118 64 1 102 215 55 172 4.93e-25 101
MsG0280008174.01.T01 MTR_2g048290 38.298 141 56 2 102 241 75 185 3.89e-24 99.8
MsG0280008174.01.T01 MTR_0062s0170 51.000 100 40 3 1 99 199 290 4.31e-24 102
MsG0280008174.01.T01 MTR_0062s0110 51.000 100 40 3 1 99 199 290 4.31e-24 102
MsG0280008174.01.T01 MTR_0062s0130 51.000 100 40 3 1 99 199 290 4.31e-24 102
MsG0280008174.01.T01 MTR_2g036240 51.000 100 40 3 1 99 199 290 4.31e-24 102
MsG0280008174.01.T01 MTR_2g036260 51.000 100 40 3 1 99 199 290 4.31e-24 102
MsG0280008174.01.T01 MTR_2g036290 51.000 100 40 3 1 99 199 290 4.31e-24 102
MsG0280008174.01.T01 MTR_8g046730 51.000 100 40 3 1 99 199 290 4.31e-24 102
MsG0280008174.01.T01 MTR_7g023870 51.111 90 44 0 138 227 58 147 7.36e-23 94.4
MsG0280008174.01.T01 MTR_8g067570 47.059 102 54 0 129 230 1 102 1.43e-22 92.0
MsG0280008174.01.T01 MTR_5g060840 39.394 132 65 2 111 240 1 119 1.60e-22 96.3
MsG0280008174.01.T01 MTR_5g460950 39.394 132 65 2 111 240 1 119 1.60e-22 96.3
MsG0280008174.01.T01 MTR_4g060870 47.273 110 47 2 189 289 128 235 2.38e-22 98.6
MsG0280008174.01.T01 MTR_8g445160 39.355 155 76 5 135 288 1 138 2.83e-21 97.1
MsG0280008174.01.T01 MTR_8g022850 36.620 142 71 4 92 233 58 180 4.07e-20 90.5
MsG0280008174.01.T01 MTR_6g037380 40.909 132 71 3 161 291 20 145 6.52e-20 90.5
MsG0280008174.01.T01 MTR_2g043290 39.815 108 44 2 159 266 4 90 1.17e-19 89.4
MsG0280008174.01.T01 MTR_0443s0040 45.631 103 46 3 1 102 201 294 3.37e-19 88.2
MsG0280008174.01.T01 MTR_8g061220 60.000 65 26 0 166 230 2 66 3.45e-19 83.6
MsG0280008174.01.T01 MTR_7g006745 36.364 121 76 1 100 219 96 216 4.03e-18 86.3
MsG0280008174.01.T01 MTR_3g465060 40.404 99 59 0 102 200 85 183 5.78e-18 85.1
MsG0280008174.01.T01 MTR_7g060590 53.623 69 32 0 166 234 100 168 1.18e-17 84.3
MsG0280008174.01.T01 MTR_6g012440 59.322 59 24 0 183 241 20 78 1.79e-17 77.8
MsG0280008174.01.T01 MTR_6g049130 37.190 121 71 2 134 250 159 278 2.96e-17 83.2
MsG0280008174.01.T01 MTR_2g036980 29.341 167 70 2 102 268 113 231 7.15e-17 82.4
MsG0280008174.01.T01 MTR_6g016995 49.315 73 37 0 104 176 22 94 2.15e-16 75.1
MsG0280008174.01.T01 MTR_8g041780 39.423 104 56 2 205 301 6 109 1.97e-15 75.5
MsG0280008174.01.T01 MTR_5g034920 37.255 102 61 1 165 263 70 171 3.03e-15 77.8
MsG0280008174.01.T01 MTR_0002s1060 40.000 100 54 2 1 100 191 284 3.28e-15 76.3
MsG0280008174.01.T01 MTR_2g054220 61.364 44 17 0 109 152 7 50 4.87e-15 69.7
MsG0280008174.01.T01 MTR_2g038110 45.349 86 45 1 193 276 2 87 1.49e-14 71.6
MsG0280008174.01.T01 MTR_3g032560 50.877 57 28 0 117 173 38 94 5.09e-14 69.7
MsG0280008174.01.T01 MTR_1g034250 35.185 108 62 2 63 164 73 178 7.02e-14 71.6
MsG0280008174.01.T01 MTR_0002s0040 40.000 100 50 3 1 98 188 279 7.46e-14 72.4
MsG0280008174.01.T01 MTR_1457s0010 40.860 93 47 2 1 93 116 200 1.17e-13 70.1
MsG0280008174.01.T01 MTR_2g074890 47.273 55 29 0 100 154 50 104 4.55e-13 71.2
MsG0280008174.01.T01 MTR_5g044720 38.961 77 47 0 190 266 65 141 5.07e-13 71.6
MsG0280008174.01.T01 MTR_5g013570 30.822 146 67 3 129 265 1 121 6.40e-13 66.2
MsG0280008174.01.T01 MTR_6g043980 47.143 70 31 1 185 254 2 65 1.21e-12 64.7
MsG0280008174.01.T01 MTR_5g065660 29.577 142 69 2 102 239 84 198 8.70e-12 65.5
MsG0280008174.01.T01 MTR_0098s0100 37.234 94 55 1 172 261 133 226 1.10e-11 67.0
MsG0280008174.01.T01 MTR_0597s0030 50.980 51 25 0 132 182 2 52 1.10e-11 62.8
MsG0280008174.01.T01 MTR_8g069240 57.778 45 19 0 103 147 107 151 1.66e-11 63.9
MsG0280008174.01.T01 MTR_3g091430 50.000 68 33 1 167 234 107 173 3.24e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008174.01.T01 AT2G01050 25.157 159 115 1 102 260 102 256 1.24e-11 67.0

Find 126 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATCGACAACATTAATT+TGG 0.190403 2:+26753362 MsG0280008174.01.T01:CDS
CGAAAGATTTACGCAAAATA+TGG 0.237888 2:+26755566 MsG0280008174.01.T01:CDS
CCCAGTTGTTTCTTTAGCTT+TGG 0.262449 2:+26756275 MsG0280008174.01.T01:CDS
CCCGGGTCGGTGCTAATTCC+TGG 0.297804 2:-26753489 None:intergenic
CGCATTACCGCAAATTGTAT+TGG 0.306653 2:+26753337 None:intergenic
ATGAAGATATTGGAAATCTT+TGG 0.320120 2:-26755641 None:intergenic
TTGGAGACACCCTTCTTCTA+AGG 0.327923 2:+26756474 MsG0280008174.01.T01:CDS
ACCTCTCAGACGGCTGTTCC+TGG 0.334065 2:+26756300 MsG0280008174.01.T01:CDS
AACAAGCTCTCAGTCGATTT+CGG 0.336408 2:+26756196 MsG0280008174.01.T01:CDS
GCATTACCGCAAATTGTATT+GGG 0.349569 2:+26753338 None:intergenic
GACTCTGTGGTTCCTCCCTC+TGG 0.357071 2:+26753627 MsG0280008174.01.T01:CDS
ATTCCTGGAAGGAATTTATC+AGG 0.361845 2:-26753474 None:intergenic
GAATAGGAACCATCTGTGTT+TGG 0.365078 2:-26756326 None:intergenic
TTCCATCACTGTCACTCTAT+TGG 0.368615 2:+26755928 MsG0280008174.01.T01:CDS
TCTGCTTCTGATGAAGATAT+TGG 0.372216 2:-26755651 None:intergenic
GACAACGGCAGTTTGGAAAA+TGG 0.382661 2:+26755501 MsG0280008174.01.T01:CDS
TGTTGTTGTCGTGTTTGTTT+AGG 0.394167 2:-26756045 None:intergenic
TCCAAAGCTAAAGAAACAAC+TGG 0.395669 2:-26756276 None:intergenic
CCAATGGAGGTACTTGGACT+TGG 0.398161 2:+26756108 MsG0280008174.01.T01:CDS
TTCGAAGAAACGTCTGAAAC+CGG 0.412310 2:-26756378 None:intergenic
ACTCCTGATAAATTCCTTCC+AGG 0.416002 2:+26753471 MsG0280008174.01.T01:CDS
TCTTGTCCTTAGCTGCTTGT+GGG 0.416448 2:-26755981 None:intergenic
TGTGGAAGACAACGGCAGTT+TGG 0.428919 2:+26755494 MsG0280008174.01.T01:CDS
CATACTTGGCTTAAGATTAA+CGG 0.430226 2:-26755599 None:intergenic
ACCATCTGTGTTTGGGAACC+AGG 0.435926 2:-26756318 None:intergenic
TTCTTGTCCTTAGCTGCTTG+TGG 0.440886 2:-26755982 None:intergenic
GGTGTCTCCAACACAGGTCT+AGG 0.441033 2:-26756462 None:intergenic
TGGGGTTGCCGCAGGAGTAT+TGG 0.442330 2:+26755701 MsG0280008174.01.T01:CDS
GGAACCAACATCGAAGGAAT+AGG 0.442330 2:-26756342 None:intergenic
CTAGGCAAAGGCAACTCATC+AGG 0.442720 2:-26756444 None:intergenic
AATAGGAACCATCTGTGTTT+GGG 0.442748 2:-26756325 None:intergenic
AGGTACTTGGACTTGGGTCC+CGG 0.446278 2:+26756115 MsG0280008174.01.T01:CDS
GGTGCTTCTTCAGCCACAAT+TGG 0.446661 2:-26756021 None:intergenic
CACGACAACAACATGGTGGG+GGG 0.449313 2:+26756055 MsG0280008174.01.T01:CDS
ACGACAACAACATGGTGGGG+GGG 0.450388 2:+26756056 MsG0280008174.01.T01:CDS
TACAGTCACTACTACTCAAA+AGG 0.454042 2:+26756151 MsG0280008174.01.T01:CDS
ACAATATTTCAACTTGTCGT+TGG 0.454324 2:+26755953 MsG0280008174.01.T01:CDS
ACTGTAGAAGTAATAGGAAC+CGG 0.456662 2:-26756134 None:intergenic
TCAAAGCAGGAGACGGAGTC+GGG 0.463348 2:-26756227 None:intergenic
GCCTTTGCCTAGACCTGTGT+TGG 0.464289 2:+26756455 MsG0280008174.01.T01:CDS
GTAGTGACTGTAGAAGTAAT+AGG 0.464579 2:-26756140 None:intergenic
ACGTCTGAAACCGGCACTAA+AGG 0.468507 2:-26756369 None:intergenic
GGTACTCCTATCGACATTGA+TGG 0.469133 2:+26755760 MsG0280008174.01.T01:CDS
TGAGAGAGACGTAACATACT+TGG 0.471430 2:-26755613 None:intergenic
AAGAAGGGTGTCTCCAACAC+AGG 0.471778 2:-26756468 None:intergenic
CATCGGCCAATGGAGGTACT+TGG 0.472641 2:+26756102 MsG0280008174.01.T01:CDS
TCTGCAGGCTCGGTGTGACC+CGG 0.475347 2:-26753507 None:intergenic
TCGACAAGAAACCGTACGTT+TGG 0.478410 2:+26755784 MsG0280008174.01.T01:CDS
AAATTCTTGTTGAGAGGGAG+GGG 0.480989 2:+26755860 MsG0280008174.01.T01:CDS
GTATGTTACGTCTCTCTCAA+TGG 0.483424 2:+26755617 MsG0280008174.01.T01:CDS
TTGGTGGGAGAGAACGTTGA+AGG 0.483843 2:+26755720 MsG0280008174.01.T01:CDS
GAAAGATTTACGCAAAATAT+GGG 0.484963 2:+26755567 MsG0280008174.01.T01:CDS
ATCATAATATCCTTTACCTA+GGG 0.498360 2:-26755527 None:intergenic
ATCTTAATAATCTTATCTGC+AGG 0.499766 2:-26753522 None:intergenic
TAGATTGGTGGGGTTGCCGC+AGG 0.501131 2:+26755693 MsG0280008174.01.T01:CDS
TCACTCTGGATTAGATTGGT+GGG 0.501527 2:+26755682 MsG0280008174.01.T01:CDS
GGTTCCTACTCCTTTAGTGC+CGG 0.507232 2:+26756359 MsG0280008174.01.T01:CDS
ATCTACTACACAGATGGTTC+TGG 0.510735 2:+26756251 MsG0280008174.01.T01:CDS
TGTATCACTCTGGATTAGAT+TGG 0.511579 2:+26755678 MsG0280008174.01.T01:CDS
AATCATAATATCCTTTACCT+AGG 0.511745 2:-26755528 None:intergenic
CCAAGGGAGATCTTCACTGC+TGG 0.512526 2:+26753546 MsG0280008174.01.T01:CDS
CAATGGAGGTACTTGGACTT+GGG 0.513155 2:+26756109 MsG0280008174.01.T01:CDS
GTACGTTTGGTCACTATGCT+AGG 0.513895 2:+26755797 MsG0280008174.01.T01:CDS
AAGTTAACGTCCTTAGAAGA+AGG 0.515722 2:-26756484 None:intergenic
GGTTGCCGCAGGAGTATTGG+TGG 0.516614 2:+26755704 MsG0280008174.01.T01:CDS
TCCAGGAATTAGCACCGACC+CGG 0.517069 2:+26753488 MsG0280008174.01.T01:CDS
AACACGACAACAACATGGTG+GGG 0.521219 2:+26756053 MsG0280008174.01.T01:CDS
CACTCTGGATTAGATTGGTG+GGG 0.521709 2:+26755683 MsG0280008174.01.T01:CDS
AGCTTGTTGCCAACGATGAA+CGG 0.523779 2:-26756181 None:intergenic
GGGGCTTCAACATCGGCCAA+TGG 0.523880 2:+26756092 MsG0280008174.01.T01:CDS
GGTTCCTATTCCTTCGATGT+TGG 0.524882 2:+26756338 MsG0280008174.01.T01:CDS
ATCACTCTGGATTAGATTGG+TGG 0.526963 2:+26755681 MsG0280008174.01.T01:CDS
AGCTTTGGATACCTCTCAGA+CGG 0.531740 2:+26756290 MsG0280008174.01.T01:CDS
CTGCAGGCTCGGTGTGACCC+GGG 0.534288 2:-26753506 None:intergenic
GTCAAAGCAGGAGACGGAGT+CGG 0.538712 2:-26756228 None:intergenic
ACACGACAACAACATGGTGG+GGG 0.543545 2:+26756054 MsG0280008174.01.T01:CDS
AAAATGGTGCCCCTAGGTAA+AGG 0.548795 2:+26755517 MsG0280008174.01.T01:CDS
TGATGAAATTCTTGTTGAGA+GGG 0.550470 2:+26755855 MsG0280008174.01.T01:CDS
CCAGCAGTGAAGATCTCCCT+TGG 0.551111 2:-26753546 None:intergenic
AAACACGACAACAACATGGT+GGG 0.551969 2:+26756052 MsG0280008174.01.T01:CDS
CCAAGTCCAAGTACCTCCAT+TGG 0.556914 2:-26756108 None:intergenic
GAAATTCTTGTTGAGAGGGA+GGG 0.557220 2:+26755859 MsG0280008174.01.T01:CDS
ATGCAATACTCCACACTCCC+TGG 0.557222 2:+26753582 MsG0280008174.01.T01:CDS
ATAAGATTATTAAGATGCCA+AGG 0.558202 2:+26753529 MsG0280008174.01.T01:CDS
TGAAATTCTTGTTGAGAGGG+AGG 0.559919 2:+26755858 MsG0280008174.01.T01:CDS
GGTTTCAGTCCGTTCATCGT+TGG 0.561333 2:+26756172 MsG0280008174.01.T01:CDS
ATGATGAAATTCTTGTTGAG+AGG 0.561437 2:+26755854 MsG0280008174.01.T01:CDS
GATACACCCACAAGCAGCTA+AGG 0.561885 2:+26755975 MsG0280008174.01.T01:CDS
CAGGAGACGGAGTCGGGAGT+CGG 0.563075 2:-26756221 None:intergenic
TCCTGGTTCCCAAACACAGA+TGG 0.570927 2:+26756317 MsG0280008174.01.T01:CDS
AGTTAACGTCCTTAGAAGAA+GGG 0.578902 2:-26756483 None:intergenic
AATAATCTTATCTGCAGGCT+CGG 0.580364 2:-26753517 None:intergenic
AGCAGACACATGTATCACTC+TGG 0.584684 2:+26755668 MsG0280008174.01.T01:CDS
TGTTGTCGTGTTTGTTTAGG+AGG 0.585642 2:-26756042 None:intergenic
AGGCTCGGTGTGACCCGGGT+CGG 0.585734 2:-26753502 None:intergenic
TTTGACATCTACTACACAGA+TGG 0.585818 2:+26756245 MsG0280008174.01.T01:CDS
GTTTGGAAAATGGTGCCCCT+AGG 0.585906 2:+26755511 MsG0280008174.01.T01:CDS
GTAGATGTCAAAGCAGGAGA+CGG 0.586788 2:-26756234 None:intergenic
TGTGTAGTAGATGTCAAAGC+AGG 0.587784 2:-26756240 None:intergenic
TTACGCAAAATATGGGCAGT+AGG 0.596311 2:+26755574 MsG0280008174.01.T01:CDS
GTTGCCGCAGGAGTATTGGT+GGG 0.600691 2:+26755705 MsG0280008174.01.T01:CDS
GGAGTAGGAACCAACATCGA+AGG 0.609018 2:-26756348 None:intergenic
TTGGAACGCTCATGACTCTG+TGG 0.609097 2:+26753614 MsG0280008174.01.T01:CDS
GCTTCAACATCGGCCAATGG+AGG 0.609944 2:+26756095 MsG0280008174.01.T01:CDS
GCTAAGGACAAGAATGATCG+TGG 0.610071 2:+26755991 MsG0280008174.01.T01:CDS
CCAAAGCTAAAGAAACAACT+GGG 0.610647 2:-26756275 None:intergenic
AAGGAGATAGCAAATGTGGT+TGG 0.612415 2:+26755739 MsG0280008174.01.T01:CDS
TCCAACACAGGTCTAGGCAA+AGG 0.621493 2:-26756456 None:intergenic
CCAGGAATTAGCACCGACCC+GGG 0.628850 2:+26753489 MsG0280008174.01.T01:CDS
GAAACCGGCACTAAAGGAGT+AGG 0.632615 2:-26756363 None:intergenic
CTGTAGAAGTAATAGGAACC+GGG 0.635696 2:-26756133 None:intergenic
CAAACACGACAACAACATGG+TGG 0.637928 2:+26756051 MsG0280008174.01.T01:CDS
TAGCATAGTGACCAAACGTA+CGG 0.638093 2:-26755795 None:intergenic
GGTCGGTGCTAATTCCTGGA+AGG 0.642942 2:-26753485 None:intergenic
TAAGATTATTAAGATGCCAA+GGG 0.644007 2:+26753530 MsG0280008174.01.T01:CDS
GTCGAACCATCAATGTCGAT+AGG 0.645284 2:-26755766 None:intergenic
GTTGAAGGAGATAGCAAATG+TGG 0.646560 2:+26755735 MsG0280008174.01.T01:CDS
AAACAAACACGACAACAACA+TGG 0.646873 2:+26756048 MsG0280008174.01.T01:CDS
CTAAGGACAAGAATGATCGT+GGG 0.658803 2:+26755992 MsG0280008174.01.T01:CDS
ACCAGGAACAGCCGTCTGAG+AGG 0.659126 2:-26756301 None:intergenic
CTCTCCCACCAATACTCCTG+CGG 0.669204 2:-26755709 None:intergenic
TCATAATATCCTTTACCTAG+GGG 0.677385 2:-26755526 None:intergenic
GCTTTGGTCTCACCAGAGGG+AGG 0.684013 2:-26753639 None:intergenic
TCGTGGGAAACAACCAATTG+TGG 0.684896 2:+26756008 MsG0280008174.01.T01:CDS
GACCAATAGAGTGACAGTGA+TGG 0.695192 2:-26755930 None:intergenic
GCAACTCATCAGGAGAAATG+CGG 0.697262 2:-26756434 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAGTCTATTTAAAAAA+AGG + Chr2:26755336-26755355 MsG0280008174.01.T01:intron 10.0%
!! TTTGTAAAAAAAATTGTTAT+TGG - Chr2:26754563-26754582 None:intergenic 10.0%
!!! ATCATATTTTTAATATGTTT+GGG + Chr2:26755372-26755391 MsG0280008174.01.T01:intron 10.0%
!!! ATTCAAGAAAAATAATTTTT+TGG - Chr2:26754711-26754730 None:intergenic 10.0%
!!! ATTTAACAAATAAATTTGTT+TGG - Chr2:26754787-26754806 None:intergenic 10.0%
!!! ATTTATGTTTTTTTTTAAAC+CGG - Chr2:26755417-26755436 None:intergenic 10.0%
!!! GAAATTAATCTTTAATTTTA+TGG + Chr2:26753747-26753766 MsG0280008174.01.T01:intron 10.0%
!!! TATCATATTTTTAATATGTT+TGG + Chr2:26755371-26755390 MsG0280008174.01.T01:intron 10.0%
!!! TGCATAATAATTTTTTTTTT+TGG - Chr2:26754017-26754036 None:intergenic 10.0%
!!! TTCAAGAAAAATAATTTTTT+GGG - Chr2:26754710-26754729 None:intergenic 10.0%
!!! TTTAACAAATAAATTTGTTT+GGG - Chr2:26754786-26754805 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + Chr2:26756072-26756091 MsG0280008174.01.T01:CDS 100.0%
!! ACAATCAATATGAATAAATT+TGG + Chr2:26754950-26754969 MsG0280008174.01.T01:intron 15.0%
!! CCTAAAAAGATATAATTTAT+TGG + Chr2:26755205-26755224 MsG0280008174.01.T01:intron 15.0%
!!! AAAAAAATTGTTGTTTTTCA+AGG - Chr2:26753966-26753985 None:intergenic 15.0%
!!! ATGTTTGTATAATTTTAGTT+TGG - Chr2:26753407-26753426 None:intergenic 15.0%
!!! ATTAGATCATGATTTAAAAT+AGG + Chr2:26754191-26754210 MsG0280008174.01.T01:intron 15.0%
!!! CAATTTTTTTTACAAATTGT+AGG + Chr2:26754567-26754586 MsG0280008174.01.T01:intron 15.0%
!!! CCAATAAATTATATCTTTTT+AGG - Chr2:26755208-26755227 None:intergenic 15.0%
!!! GTAGCTAAATATTTTTTATT+TGG - Chr2:26754763-26754782 None:intergenic 15.0%
!!! TCAAGAAAAATAATTTTTTG+GGG - Chr2:26754709-26754728 None:intergenic 15.0%
!!! TTAACAAATAAATTTGTTTG+GGG - Chr2:26754785-26754804 None:intergenic 15.0%
!!! TTATATTAATTTGACACTTT+CGG + Chr2:26754848-26754867 MsG0280008174.01.T01:intron 15.0%
!! AAAATTTGAAAAAGAGAAAC+AGG - Chr2:26754100-26754119 None:intergenic 20.0%
!!! ATATGAATAAATTTGGCTTT+TGG + Chr2:26754957-26754976 MsG0280008174.01.T01:intron 20.0%
!!! ATTATTTTTCTTGAATGAGT+TGG + Chr2:26754715-26754734 MsG0280008174.01.T01:intron 20.0%
!!! TGTAAGTAGATATAATTTTC+CGG + Chr2:26755395-26755414 MsG0280008174.01.T01:intron 20.0%
! AAACATCGACAACATTAATT+TGG + Chr2:26753362-26753381 MsG0280008174.01.T01:CDS 25.0%
! AAGAAGTAGACATATGTTAA+TGG + Chr2:26754314-26754333 MsG0280008174.01.T01:intron 25.0%
! AATCATAATATCCTTTACCT+AGG - Chr2:26755531-26755550 None:intergenic 25.0%
! ATAAGATTATTAAGATGCCA+AGG + Chr2:26753529-26753548 MsG0280008174.01.T01:CDS 25.0%
! ATCATAATATCCTTTACCTA+GGG - Chr2:26755530-26755549 None:intergenic 25.0%
! ATCTTAATAATCTTATCTGC+AGG - Chr2:26753525-26753544 None:intergenic 25.0%
! ATGAAGATATTGGAAATCTT+TGG - Chr2:26755644-26755663 None:intergenic 25.0%
! ATTACAAGTGATGAATAAGA+AGG + Chr2:26754254-26754273 MsG0280008174.01.T01:intron 25.0%
! CAACATAGTAAAAAAACCTT+TGG - Chr2:26754137-26754156 None:intergenic 25.0%
! GAAAGATTTACGCAAAATAT+GGG + Chr2:26755567-26755586 MsG0280008174.01.T01:CDS 25.0%
! TAAGATTATTAAGATGCCAA+GGG + Chr2:26753530-26753549 MsG0280008174.01.T01:CDS 25.0%
! TTAAAAAAAAATCCTCCTGA+CGG - Chr2:26754382-26754401 None:intergenic 25.0%
!! AGTGATTTTCTTTAACATGT+TGG + Chr2:26754994-26755013 MsG0280008174.01.T01:intron 25.0%
!! TAACATGTTGGTTAAGATTA+GGG + Chr2:26755006-26755025 MsG0280008174.01.T01:intron 25.0%
!! TTAACATGTTGGTTAAGATT+AGG + Chr2:26755005-26755024 MsG0280008174.01.T01:intron 25.0%
!! TTATGATTTTCGTTTCGAAT+CGG + Chr2:26755543-26755562 MsG0280008174.01.T01:CDS 25.0%
!!! ATTTTACCATATTTTGGCAT+TGG - Chr2:26754624-26754643 None:intergenic 25.0%
!!! CTTTTTCAACGTAAACAAAT+AGG - Chr2:26754908-26754927 None:intergenic 25.0%
AACAAGAATTGAGTAGAAGA+TGG - Chr2:26754061-26754080 None:intergenic 30.0%
AACCCAAAAACAAAAAATGC+AGG + Chr2:26754596-26754615 MsG0280008174.01.T01:intron 30.0%
AAGAAGGTGAAATTGAAGTT+GGG + Chr2:26754270-26754289 MsG0280008174.01.T01:intron 30.0%
AAGGTGTGTTTGGAAAATTA+GGG + Chr2:26755467-26755486 MsG0280008174.01.T01:intron 30.0%
ACAAGAATTGAGTAGAAGAT+GGG - Chr2:26754060-26754079 None:intergenic 30.0%
ACAATATTTCAACTTGTCGT+TGG + Chr2:26755953-26755972 MsG0280008174.01.T01:CDS 30.0%
ACCCAAAAACAAAAAATGCA+GGG + Chr2:26754597-26754616 MsG0280008174.01.T01:intron 30.0%
AGGAATTAATCACACATTCA+AGG + Chr2:26754647-26754666 MsG0280008174.01.T01:intron 30.0%
ATAGCACTCATAGAAAACAT+AGG - Chr2:26753825-26753844 None:intergenic 30.0%
ATAGGAGAAGAAGATGAAAT+TGG + Chr2:26754209-26754228 MsG0280008174.01.T01:intron 30.0%
ATGATGAAATTCTTGTTGAG+AGG + Chr2:26755854-26755873 MsG0280008174.01.T01:CDS 30.0%
CAATTCATAGTTATTTGACG+AGG - Chr2:26753698-26753717 None:intergenic 30.0%
CATACTTGGCTTAAGATTAA+CGG - Chr2:26755602-26755621 None:intergenic 30.0%
CCAAAATATGGTAAAATTGC+AGG + Chr2:26754627-26754646 MsG0280008174.01.T01:intron 30.0%
CGAAAGATTTACGCAAAATA+TGG + Chr2:26755566-26755585 MsG0280008174.01.T01:CDS 30.0%
GGAATTAATCACACATTCAA+GGG + Chr2:26754648-26754667 MsG0280008174.01.T01:intron 30.0%
TAAGAAGGTGAAATTGAAGT+TGG + Chr2:26754269-26754288 MsG0280008174.01.T01:intron 30.0%
TAAGGTGTGTTTGGAAAATT+AGG + Chr2:26755466-26755485 MsG0280008174.01.T01:intron 30.0%
TAGTAATACTGTAACACTGT+TGG + Chr2:26754157-26754176 MsG0280008174.01.T01:intron 30.0%
TCATAATATCCTTTACCTAG+GGG - Chr2:26755529-26755548 None:intergenic 30.0%
TGATGAAATTCTTGTTGAGA+GGG + Chr2:26755855-26755874 MsG0280008174.01.T01:CDS 30.0%
TGTTTACGAAGAATGACATA+AGG + Chr2:26755448-26755467 MsG0280008174.01.T01:intron 30.0%
TTTGTATTATGTTGTGAGTG+TGG + Chr2:26753873-26753892 MsG0280008174.01.T01:intron 30.0%
! ACACTCTTCTTCTTTTCTTT+TGG + Chr2:26755141-26755160 MsG0280008174.01.T01:intron 30.0%
! CCTGCAATTTTACCATATTT+TGG - Chr2:26754630-26754649 None:intergenic 30.0%
!! AATTTCTAGCTAGATATAGC+TGG - Chr2:26753733-26753752 None:intergenic 30.0%
!!! TCCCTGCATTTTTTGTTTTT+GGG - Chr2:26754601-26754620 None:intergenic 30.0%
AAACAAACACGACAACAACA+TGG + Chr2:26756048-26756067 MsG0280008174.01.T01:CDS 35.0%
AAGCTAGCAGAAATATTACG+CGG - Chr2:26755304-26755323 None:intergenic 35.0%
AATAATCTTATCTGCAGGCT+CGG - Chr2:26753520-26753539 None:intergenic 35.0%
AATAGGAACCATCTGTGTTT+GGG - Chr2:26756328-26756347 None:intergenic 35.0%
ACATATGTTAATGGTCGTGA+TGG + Chr2:26754323-26754342 MsG0280008174.01.T01:intron 35.0%
ACTGTAGAAGTAATAGGAAC+CGG - Chr2:26756137-26756156 None:intergenic 35.0%
AGAATGACATAAGGTGTGTT+TGG + Chr2:26755457-26755476 MsG0280008174.01.T01:intron 35.0%
AGGTGTGTTTGGAAAATTAG+GGG + Chr2:26755468-26755487 MsG0280008174.01.T01:intron 35.0%
ATTCCTGGAAGGAATTTATC+AGG - Chr2:26753477-26753496 None:intergenic 35.0%
CAAGAATTGAGTAGAAGATG+GGG - Chr2:26754059-26754078 None:intergenic 35.0%
CCAAAGCTAAAGAAACAACT+GGG - Chr2:26756278-26756297 None:intergenic 35.0%
CGGTCAAAAACATTATGAAG+TGG - Chr2:26756417-26756436 None:intergenic 35.0%
CGTTCCAAAGAAAAATACCA+GGG - Chr2:26753602-26753621 None:intergenic 35.0%
GAAGAAGATGAAATTGGAGT+TGG + Chr2:26754215-26754234 MsG0280008174.01.T01:intron 35.0%
GTAGTGACTGTAGAAGTAAT+AGG - Chr2:26756143-26756162 None:intergenic 35.0%
TACAGTCACTACTACTCAAA+AGG + Chr2:26756151-26756170 MsG0280008174.01.T01:CDS 35.0%
TCCAAAGCTAAAGAAACAAC+TGG - Chr2:26756279-26756298 None:intergenic 35.0%
TCTGCTTCTGATGAAGATAT+TGG - Chr2:26755654-26755673 None:intergenic 35.0%
TGTTGTTGTCGTGTTTGTTT+AGG - Chr2:26756048-26756067 None:intergenic 35.0%
TTCATAGTTATTTGACGAGG+AGG - Chr2:26753695-26753714 None:intergenic 35.0%
TTCTTCATCAACGATACCAA+AGG + Chr2:26754118-26754137 MsG0280008174.01.T01:intron 35.0%
TTTGACATCTACTACACAGA+TGG + Chr2:26756245-26756264 MsG0280008174.01.T01:CDS 35.0%
! TGACAGTGATGGAAAAACAA+AGG - Chr2:26755922-26755941 None:intergenic 35.0%
! TGTATCACTCTGGATTAGAT+TGG + Chr2:26755678-26755697 MsG0280008174.01.T01:CDS 35.0%
!! AAATTGAAGTTGGGTGTTGA+TGG + Chr2:26754279-26754298 MsG0280008174.01.T01:intron 35.0%
!!! ATAATTTTTTGGGGTAGCCT+TGG - Chr2:26754700-26754719 None:intergenic 35.0%
!!! GTCCCTGCATTTTTTGTTTT+TGG - Chr2:26754602-26754621 None:intergenic 35.0%
AAACACGACAACAACATGGT+GGG + Chr2:26756052-26756071 MsG0280008174.01.T01:CDS 40.0%
AAATTCTTGTTGAGAGGGAG+GGG + Chr2:26755860-26755879 MsG0280008174.01.T01:CDS 40.0%
AAGAAAAATACCAGGGAGTG+TGG - Chr2:26753595-26753614 None:intergenic 40.0%
AAGGAGATAGCAAATGTGGT+TGG + Chr2:26755739-26755758 MsG0280008174.01.T01:CDS 40.0%
ACTCCTGATAAATTCCTTCC+AGG + Chr2:26753471-26753490 MsG0280008174.01.T01:CDS 40.0%
AGCTAGCAGAAATATTACGC+GGG - Chr2:26755303-26755322 None:intergenic 40.0%
ATAGTTATTTGACGAGGAGG+AGG - Chr2:26753692-26753711 None:intergenic 40.0%
ATCTACTACACAGATGGTTC+TGG + Chr2:26756251-26756270 MsG0280008174.01.T01:CDS 40.0%
CTAAGGACAAGAATGATCGT+GGG + Chr2:26755992-26756011 MsG0280008174.01.T01:CDS 40.0%
CTGTAGAAGTAATAGGAACC+GGG - Chr2:26756136-26756155 None:intergenic 40.0%
GAAATTCTTGTTGAGAGGGA+GGG + Chr2:26755859-26755878 MsG0280008174.01.T01:CDS 40.0%
GAATAGGAACCATCTGTGTT+TGG - Chr2:26756329-26756348 None:intergenic 40.0%
GCGTTCCAAAGAAAAATACC+AGG - Chr2:26753603-26753622 None:intergenic 40.0%
GGTGTGTTTGGAAAATTAGG+GGG + Chr2:26755469-26755488 MsG0280008174.01.T01:intron 40.0%
GTATGTTACGTCTCTCTCAA+TGG + Chr2:26755617-26755636 MsG0280008174.01.T01:CDS 40.0%
GTGTGTTTGGAAAATTAGGG+GGG + Chr2:26755470-26755489 MsG0280008174.01.T01:intron 40.0%
GTTGAAGGAGATAGCAAATG+TGG + Chr2:26755735-26755754 MsG0280008174.01.T01:CDS 40.0%
TAGCATAGTGACCAAACGTA+CGG - Chr2:26755798-26755817 None:intergenic 40.0%
TATGGGTCAAGTATCACAAG+TGG + Chr2:26753765-26753784 MsG0280008174.01.T01:intron 40.0%
TGAAATTCTTGTTGAGAGGG+AGG + Chr2:26755858-26755877 MsG0280008174.01.T01:CDS 40.0%
TGAGAGAGACGTAACATACT+TGG - Chr2:26755616-26755635 None:intergenic 40.0%
TGTGTAGTAGATGTCAAAGC+AGG - Chr2:26756243-26756262 None:intergenic 40.0%
TGTTGTCGTGTTTGTTTAGG+AGG - Chr2:26756045-26756064 None:intergenic 40.0%
TTACGCAAAATATGGGCAGT+AGG + Chr2:26755574-26755593 MsG0280008174.01.T01:CDS 40.0%
TTCCATCACTGTCACTCTAT+TGG + Chr2:26755928-26755947 MsG0280008174.01.T01:CDS 40.0%
! AACAAGCTCTCAGTCGATTT+CGG + Chr2:26756196-26756215 MsG0280008174.01.T01:CDS 40.0%
! ATCACTCTGGATTAGATTGG+TGG + Chr2:26755681-26755700 MsG0280008174.01.T01:CDS 40.0%
! CACTCCCTGGTATTTTTCTT+TGG + Chr2:26753595-26753614 MsG0280008174.01.T01:CDS 40.0%
! TCACTCTGGATTAGATTGGT+GGG + Chr2:26755682-26755701 MsG0280008174.01.T01:CDS 40.0%
! TTCGAAGAAACGTCTGAAAC+CGG - Chr2:26756381-26756400 None:intergenic 40.0%
! TTGTCTTTTAGTGTGCCACA+TGG + Chr2:26754491-26754510 MsG0280008174.01.T01:intron 40.0%
!! AAAAATCCTCCTGACGGATT+AGG - Chr2:26754376-26754395 None:intergenic 40.0%
!! CCCAGTTGTTTCTTTAGCTT+TGG + Chr2:26756275-26756294 MsG0280008174.01.T01:CDS 40.0%
!! GAAATTGGAGTTGGTGTTGA+TGG + Chr2:26754224-26754243 MsG0280008174.01.T01:intron 40.0%
AAAATGGTGCCCCTAGGTAA+AGG + Chr2:26755517-26755536 MsG0280008174.01.T01:CDS 45.0%
AACACGACAACAACATGGTG+GGG + Chr2:26756053-26756072 MsG0280008174.01.T01:CDS 45.0%
AGCAGACACATGTATCACTC+TGG + Chr2:26755668-26755687 MsG0280008174.01.T01:CDS 45.0%
CAAACACGACAACAACATGG+TGG + Chr2:26756051-26756070 MsG0280008174.01.T01:CDS 45.0%
CAGGGACCAATGCCAAAATA+TGG + Chr2:26754615-26754634 MsG0280008174.01.T01:intron 45.0%
GACAACGGCAGTTTGGAAAA+TGG + Chr2:26755501-26755520 MsG0280008174.01.T01:CDS 45.0%
GACCAATAGAGTGACAGTGA+TGG - Chr2:26755933-26755952 None:intergenic 45.0%
GCAACTCATCAGGAGAAATG+CGG - Chr2:26756437-26756456 None:intergenic 45.0%
GCTAAGGACAAGAATGATCG+TGG + Chr2:26755991-26756010 MsG0280008174.01.T01:CDS 45.0%
GCTAGCAGAAATATTACGCG+GGG - Chr2:26755302-26755321 None:intergenic 45.0%
GGAACCAACATCGAAGGAAT+AGG - Chr2:26756345-26756364 None:intergenic 45.0%
GGTACTCCTATCGACATTGA+TGG + Chr2:26755760-26755779 MsG0280008174.01.T01:CDS 45.0%
GGTTCCTATTCCTTCGATGT+TGG + Chr2:26756338-26756357 MsG0280008174.01.T01:CDS 45.0%
GTACGTTTGGTCACTATGCT+AGG + Chr2:26755797-26755816 MsG0280008174.01.T01:CDS 45.0%
GTAGATGTCAAAGCAGGAGA+CGG - Chr2:26756237-26756256 None:intergenic 45.0%
GTCGAACCATCAATGTCGAT+AGG - Chr2:26755769-26755788 None:intergenic 45.0%
TCGACAAGAAACCGTACGTT+TGG + Chr2:26755784-26755803 MsG0280008174.01.T01:CDS 45.0%
TCGTGGGAAACAACCAATTG+TGG + Chr2:26756008-26756027 MsG0280008174.01.T01:CDS 45.0%
TCTTGTCCTTAGCTGCTTGT+GGG - Chr2:26755984-26756003 None:intergenic 45.0%
TTCTTGTCCTTAGCTGCTTG+TGG - Chr2:26755985-26756004 None:intergenic 45.0%
TTGGAAAATTAGGGGGGTTG+TGG + Chr2:26755476-26755495 MsG0280008174.01.T01:intron 45.0%
TTTGCAAGATGTCCTCAAGG+AGG - Chr2:26753668-26753687 None:intergenic 45.0%
! AAAGCTTTGGTCTCACCAGA+GGG - Chr2:26753645-26753664 None:intergenic 45.0%
! CACTCTGGATTAGATTGGTG+GGG + Chr2:26755683-26755702 MsG0280008174.01.T01:CDS 45.0%
! GTCGTGATGGTGAATTCAAG+AGG + Chr2:26754336-26754355 MsG0280008174.01.T01:intron 45.0%
!! AGCTTGTTGCCAACGATGAA+CGG - Chr2:26756184-26756203 None:intergenic 45.0%
!! AGCTTTGGATACCTCTCAGA+CGG + Chr2:26756290-26756309 MsG0280008174.01.T01:CDS 45.0%
!! AGTTGGGTGTTGATGGAGTT+TGG + Chr2:26754286-26754305 MsG0280008174.01.T01:intron 45.0%
!! CAATGGAGGTACTTGGACTT+GGG + Chr2:26756109-26756128 MsG0280008174.01.T01:CDS 45.0%
!!! AAATTAATCTTTAATTTTAT+GGG + Chr2:26753748-26753767 MsG0280008174.01.T01:intron 5.0%
!!! TTTATTTAACTTATTTTAAT+TGG + Chr2:26754464-26754483 MsG0280008174.01.T01:intron 5.0%
ACACGACAACAACATGGTGG+GGG + Chr2:26756054-26756073 MsG0280008174.01.T01:CDS 50.0%
ACCATCTGTGTTTGGGAACC+AGG - Chr2:26756321-26756340 None:intergenic 50.0%
AGTGCCACGTGACCCAATTA+TGG - Chr2:26754521-26754540 None:intergenic 50.0%
ATGCAATACTCCACACTCCC+TGG + Chr2:26753582-26753601 MsG0280008174.01.T01:CDS 50.0%
CCAAGTCCAAGTACCTCCAT+TGG - Chr2:26756111-26756130 None:intergenic 50.0%
CCACATGGCGTGCCATAATT+GGG + Chr2:26754506-26754525 MsG0280008174.01.T01:intron 50.0%
CTAGGCAAAGGCAACTCATC+AGG - Chr2:26756447-26756466 None:intergenic 50.0%
GAAACCGGCACTAAAGGAGT+AGG - Chr2:26756366-26756385 None:intergenic 50.0%
GACCAAAGCTTTCCTCCTTG+AGG + Chr2:26753653-26753672 MsG0280008174.01.T01:intron 50.0%
GATACACCCACAAGCAGCTA+AGG + Chr2:26755975-26755994 MsG0280008174.01.T01:CDS 50.0%
GGAGTAGGAACCAACATCGA+AGG - Chr2:26756351-26756370 None:intergenic 50.0%
GGCTTTGCAAGATGTCCTCA+AGG - Chr2:26753671-26753690 None:intergenic 50.0%
GGTGCTTCTTCAGCCACAAT+TGG - Chr2:26756024-26756043 None:intergenic 50.0%
GGTTCCTACTCCTTTAGTGC+CGG + Chr2:26756359-26756378 MsG0280008174.01.T01:CDS 50.0%
GGTTTCAGTCCGTTCATCGT+TGG + Chr2:26756172-26756191 MsG0280008174.01.T01:CDS 50.0%
GTCCTCAAGGAGGAAAGCTT+TGG - Chr2:26753658-26753677 None:intergenic 50.0%
GTCTCACAACCTAATCCGTC+AGG + Chr2:26754364-26754383 MsG0280008174.01.T01:intron 50.0%
GTTTGGAAAATGGTGCCCCT+AGG + Chr2:26755511-26755530 MsG0280008174.01.T01:CDS 50.0%
TCAACACCATGTGGTAGCCA+AGG + Chr2:26754680-26754699 MsG0280008174.01.T01:intron 50.0%
TCACAACCTAATCCGTCAGG+AGG + Chr2:26754367-26754386 MsG0280008174.01.T01:intron 50.0%
TCCAACACAGGTCTAGGCAA+AGG - Chr2:26756459-26756478 None:intergenic 50.0%
TCCTGGTTCCCAAACACAGA+TGG + Chr2:26756317-26756336 MsG0280008174.01.T01:CDS 50.0%
TGTGGAAGACAACGGCAGTT+TGG + Chr2:26755494-26755513 MsG0280008174.01.T01:CDS 50.0%
TTGGAACGCTCATGACTCTG+TGG + Chr2:26753614-26753633 MsG0280008174.01.T01:CDS 50.0%
TTGGTGGGAGAGAACGTTGA+AGG + Chr2:26755720-26755739 MsG0280008174.01.T01:CDS 50.0%
! ACGTCTGAAACCGGCACTAA+AGG - Chr2:26756372-26756391 None:intergenic 50.0%
! GAAAGCTTTGGTCTCACCAG+AGG - Chr2:26753646-26753665 None:intergenic 50.0%
! GGCTACCACATGGTGTTGAA+GGG - Chr2:26754679-26754698 None:intergenic 50.0%
! TGGCTACCACATGGTGTTGA+AGG - Chr2:26754680-26754699 None:intergenic 50.0%
!! AAGAAGGGTGTCTCCAACAC+AGG - Chr2:26756471-26756490 None:intergenic 50.0%
!! CCAATGGAGGTACTTGGACT+TGG + Chr2:26756108-26756127 MsG0280008174.01.T01:CDS 50.0%
!! GAGGGAGGGGTTCACTTTTA+AGG + Chr2:26755873-26755892 MsG0280008174.01.T01:CDS 50.0%
!! GGAGGGGTTCACTTTTAAGG+TGG + Chr2:26755876-26755895 MsG0280008174.01.T01:CDS 50.0%
AGGGGGGTTGTGGAAGACAA+CGG + Chr2:26755486-26755505 MsG0280008174.01.T01:intron 55.0%
AGGTACTTGGACTTGGGTCC+CGG + Chr2:26756115-26756134 MsG0280008174.01.T01:CDS 55.0%
CCAAGGGAGATCTTCACTGC+TGG + Chr2:26753546-26753565 MsG0280008174.01.T01:CDS 55.0%
CCAGCAGTGAAGATCTCCCT+TGG - Chr2:26753549-26753568 None:intergenic 55.0%
CCCAATTATGGCACGCCATG+TGG - Chr2:26754509-26754528 None:intergenic 55.0%
CGTAGCCCTTCAACACCATG+TGG + Chr2:26754671-26754690 MsG0280008174.01.T01:intron 55.0%
CGTGCCATAATTGGGTCACG+TGG + Chr2:26754514-26754533 MsG0280008174.01.T01:intron 55.0%
CTCTCCCACCAATACTCCTG+CGG - Chr2:26755712-26755731 None:intergenic 55.0%
GCCACATGGCGTGCCATAAT+TGG + Chr2:26754505-26754524 MsG0280008174.01.T01:intron 55.0%
GCCTTTGCCTAGACCTGTGT+TGG + Chr2:26756455-26756474 MsG0280008174.01.T01:CDS 55.0%
GCTTCAACATCGGCCAATGG+AGG + Chr2:26756095-26756114 MsG0280008174.01.T01:CDS 55.0%
GGTGTCTCCAACACAGGTCT+AGG - Chr2:26756465-26756484 None:intergenic 55.0%
GTCAAAGCAGGAGACGGAGT+CGG - Chr2:26756231-26756250 None:intergenic 55.0%
TCAAAGCAGGAGACGGAGTC+GGG - Chr2:26756230-26756249 None:intergenic 55.0%
! ACGACAACAACATGGTGGGG+GGG + Chr2:26756056-26756075 MsG0280008174.01.T01:CDS 55.0%
! CACGACAACAACATGGTGGG+GGG + Chr2:26756055-26756074 MsG0280008174.01.T01:CDS 55.0%
!! CATCGGCCAATGGAGGTACT+TGG + Chr2:26756102-26756121 MsG0280008174.01.T01:CDS 55.0%
!! GGTCGGTGCTAATTCCTGGA+AGG - Chr2:26753488-26753507 None:intergenic 55.0%
!! GTTGCCGCAGGAGTATTGGT+GGG + Chr2:26755705-26755724 MsG0280008174.01.T01:CDS 55.0%
!! TCCAGGAATTAGCACCGACC+CGG + Chr2:26753488-26753507 MsG0280008174.01.T01:CDS 55.0%
ACCAGGAACAGCCGTCTGAG+AGG - Chr2:26756304-26756323 None:intergenic 60.0%
ACCTCTCAGACGGCTGTTCC+TGG + Chr2:26756300-26756319 MsG0280008174.01.T01:CDS 60.0%
GACTCTGTGGTTCCTCCCTC+TGG + Chr2:26753627-26753646 MsG0280008174.01.T01:CDS 60.0%
GCTTTGGTCTCACCAGAGGG+AGG - Chr2:26753642-26753661 None:intergenic 60.0%
GGGGCTTCAACATCGGCCAA+TGG + Chr2:26756092-26756111 MsG0280008174.01.T01:CDS 60.0%
TAGATTGGTGGGGTTGCCGC+AGG + Chr2:26755693-26755712 MsG0280008174.01.T01:CDS 60.0%
! ACAACAACATGGTGGGGGGG+GGG + Chr2:26756059-26756078 MsG0280008174.01.T01:CDS 60.0%
! CGACAACAACATGGTGGGGG+GGG + Chr2:26756057-26756076 MsG0280008174.01.T01:CDS 60.0%
! GACAACAACATGGTGGGGGG+GGG + Chr2:26756058-26756077 MsG0280008174.01.T01:CDS 60.0%
! GGGTAGCCTTGGCTACCACA+TGG - Chr2:26754689-26754708 None:intergenic 60.0%
! TGGGGTTGCCGCAGGAGTAT+TGG + Chr2:26755701-26755720 MsG0280008174.01.T01:CDS 60.0%
!! CCAGGAATTAGCACCGACCC+GGG + Chr2:26753489-26753508 MsG0280008174.01.T01:CDS 60.0%
!! GGTTGCCGCAGGAGTATTGG+TGG + Chr2:26755704-26755723 MsG0280008174.01.T01:CDS 60.0%
CAGGAGACGGAGTCGGGAGT+CGG - Chr2:26756224-26756243 None:intergenic 65.0%
! AACAACATGGTGGGGGGGGG+GGG + Chr2:26756061-26756080 MsG0280008174.01.T01:CDS 65.0%
! CAACAACATGGTGGGGGGGG+GGG + Chr2:26756060-26756079 MsG0280008174.01.T01:CDS 65.0%
!! CCCGGGTCGGTGCTAATTCC+TGG - Chr2:26753492-26753511 None:intergenic 65.0%
!! TCTGCAGGCTCGGTGTGACC+CGG - Chr2:26753510-26753529 None:intergenic 65.0%
GGGGGGGGGGGCTTCAACAT+CGG + Chr2:26756085-26756104 MsG0280008174.01.T01:CDS 70.0%
! ACAACATGGTGGGGGGGGGG+GGG + Chr2:26756062-26756081 MsG0280008174.01.T01:CDS 70.0%
!! AGGCTCGGTGTGACCCGGGT+CGG - Chr2:26753505-26753524 None:intergenic 70.0%
!! CTGCAGGCTCGGTGTGACCC+GGG - Chr2:26753509-26753528 None:intergenic 70.0%
! AACATGGTGGGGGGGGGGGG+GGG + Chr2:26756064-26756083 MsG0280008174.01.T01:CDS 75.0%
! CAACATGGTGGGGGGGGGGG+GGG + Chr2:26756063-26756082 MsG0280008174.01.T01:CDS 75.0%
!! ACATGGTGGGGGGGGGGGGG+GGG + Chr2:26756065-26756084 MsG0280008174.01.T01:CDS 80.0%
!! ATGGTGGGGGGGGGGGGGGG+GGG + Chr2:26756067-26756086 MsG0280008174.01.T01:CDS 85.0%
!! CATGGTGGGGGGGGGGGGGG+GGG + Chr2:26756066-26756085 MsG0280008174.01.T01:CDS 85.0%
! TGGTGGGGGGGGGGGGGGGG+GGG + Chr2:26756068-26756087 MsG0280008174.01.T01:CDS 90.0%
! GGTGGGGGGGGGGGGGGGGG+GGG + Chr2:26756069-26756088 MsG0280008174.01.T01:CDS 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + Chr2:26756070-26756089 MsG0280008174.01.T01:CDS 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + Chr2:26756071-26756090 MsG0280008174.01.T01:CDS 95.0%
Chromosome Type Strat End Strand Name
Chr2 gene 26753351 26756494 26753351 ID=MsG0280008174.01;Name=MsG0280008174.01
Chr2 mRNA 26753351 26756494 26753351 ID=MsG0280008174.01.T01;Parent=MsG0280008174.01;Name=MsG0280008174.01.T01;_AED=0.59;_eAED=0.59;_QI=0|0|0|1|1|1|2|0|434
Chr2 exon 26753351 26753648 26753351 ID=MsG0280008174.01.T01:exon:18733;Parent=MsG0280008174.01.T01
Chr2 exon 26755488 26756494 26755488 ID=MsG0280008174.01.T01:exon:18734;Parent=MsG0280008174.01.T01
Chr2 CDS 26753351 26753648 26753351 ID=MsG0280008174.01.T01:cds;Parent=MsG0280008174.01.T01
Chr2 CDS 26755488 26756494 26755488 ID=MsG0280008174.01.T01:cds;Parent=MsG0280008174.01.T01
Gene Sequence

>MsG0280008174.01.T01

TTGTATTGGGAAAACATCGACAACATTAATTTGGTTGACTACAAGTTCTACAACCAAACTAAAATTATACAAACATCTGAAGAATTTGTAAAACTTTATCTAAAGATAGCAAATGACTACACTCCTGATAAATTCCTTCCAGGAATTAGCACCGACCCGGGTCACACCGAGCCTGCAGATAAGATTATTAAGATGCCAAGGGAGATCTTCACTGCTGGCTGCAAACATCTTATGCAATACTCCACACTCCCTGGTATTTTTCTTTGGAACGCTCATGACTCTGTGGTTCCTCCCTCTGGGGGGTTGTGGAAGACAACGGCAGTTTGGAAAATGGTGCCCCTAGGTAAAGGATATTATGATTTTCGTTTCGAATCGGCGAAAGATTTACGCAAAATATGGGCAGTAGGCACCGTTAATCTTAAGCCAAGTATGTTACGTCTCTCTCAATGGACCAAAGATTTCCAATATCTTCATCAGAAGCAGACACATGTATCACTCTGGATTAGATTGGTGGGGTTGCCGCAGGAGTATTGGTGGGAGAGAACGTTGAAGGAGATAGCAAATGTGGTTGGTACTCCTATCGACATTGATGGTTCGACAAGAAACCGTACGTTTGGTCACTATGCTAGGATTTTAGTGCACATTTTTCTTTCAAAGAGAGCATATGATGAAATTCTTGTTGAGAGGGAGGGGTTCACTTTTAAGGTGGAAGTTGAGTATGAGAGAAGACCTTTGTTTTTCCATCACTGTCACTCTATTGGTCACAATATTTCAACTTGTCGTTGGATACACCCACAAGCAGCTAAGGACAAGAATGATCGTGGGAAACAACCAATTGTGGCTGAAGAAGCACCTCCTAAACAAACACGACAACAACATGGTGGGGGGGGGGGGGGGGGGGGGGGGCTTCAACATCGGCCAATGGAGGTACTTGGACTTGGGTCCCGGTTCCTATTACTTCTACAGTCACTACTACTCAAAAGGTTTCAGTCCGTTCATCGTTGGCAACAAGCTCTCAGTCGATTTCGGTTCCGACTCCCGACTCCGTCTCCTGCTTTGACATCTACTACACAGATGGTTCTGGTCCCAGTTGTTTCTTTAGCTTTGGATACCTCTCAGACGGCTGTTCCTGGTTCCCAAACACAGATGGTTCCTATTCCTTCGATGTTGGTTCCTACTCCTTTAGTGCCGGTTTCAGACGTTTCTTCGAACTCTTTCAGCTTTCCACTTCATAATGTTTTTGACCGCATTTCTCCTGATGAGTTGCCTTTGCCTAGACCTGTGTTGGAGACACCCTTCTTCTAA
Protein sequence

>MsG0280008174.01.T01

LYWENIDNINLVDYKFYNQTKIIQTSEEFVKLYLKIANDYTPDKFLPGISTDPGHTEPADKIIKMPREIFTAGCKHLMQYSTLPGIFLWNAHDSVVPPSGGLWKTTAVWKMVPLGKGYYDFRFESAKDLRKIWAVGTVNLKPSMLRLSQWTKDFQYLHQKQTHVSLWIRLVGLPQEYWWERTLKEIANVVGTPIDIDGSTRNRTFGHYARILVHIFLSKRAYDEILVEREGFTFKVEVEYERRPLFFHHCHSIGHNISTCRWIHPQAAKDKNDRGKQPIVAEEAPPKQTRQQHGGGGGGGGGLQHRPMEVLGLGSRFLLLLQSLLLKRFQSVHRWQQALSRFRFRLPTPSPALTSTTQMVLVPVVSLALDTSQTAVPGSQTQMVPIPSMLVPTPLVPVSDVSSNSFSFPLHNVFDRISPDELPLPRPVLETPFF*