AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008176.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008176.01.T01 MTR_2g031910 61.257 191 40 1 141 331 9 165 2.08e-73 231
MsG0280008176.01.T01 MTR_4g031410 53.070 228 78 2 141 367 12 211 3.47e-69 221
MsG0280008176.01.T01 MTR_4g031755 53.070 228 78 2 141 367 12 211 3.47e-69 221
MsG0280008176.01.T01 MTR_2g013990 41.925 322 78 8 141 458 36 252 1.33e-61 204
MsG0280008176.01.T01 MTR_4g031785 58.152 184 45 2 141 323 12 164 1.73e-60 202
MsG0280008176.01.T01 MTR_6g045237 52.571 175 81 2 141 314 118 291 1.31e-59 203
MsG0280008176.01.T01 MTR_3g050340 42.812 320 89 6 141 459 98 324 1.81e-59 200
MsG0280008176.01.T01 MTR_0062s0020 91.579 95 8 0 1 95 183 277 3.94e-56 188
MsG0280008176.01.T01 MTR_0012s0140 71.200 125 36 0 141 265 125 249 4.61e-56 196
MsG0280008176.01.T01 MTR_8g445450 70.732 123 36 0 141 263 84 206 6.94e-55 184
MsG0280008176.01.T01 MTR_4g096760 43.878 196 87 2 140 332 124 299 2.89e-50 179
MsG0280008176.01.T01 MTR_4g031470 69.167 120 36 1 205 323 49 168 1.46e-48 164
MsG0280008176.01.T01 MTR_6g038330 74.528 106 27 0 141 246 4 109 4.33e-48 166
MsG0280008176.01.T01 MTR_0195s0020 35.494 324 155 10 99 411 88 368 1.76e-47 171
MsG0280008176.01.T01 MTR_0195s0010 46.784 171 86 2 95 265 84 249 1.40e-45 159
MsG0280008176.01.T01 MTR_7g111460 48.299 147 76 0 141 287 108 254 6.29e-45 167
MsG0280008176.01.T01 MTR_3g079805 51.799 139 67 0 130 268 55 193 1.73e-44 158
MsG0280008176.01.T01 MTR_6g471850 53.788 132 57 1 142 273 90 217 5.11e-44 161
MsG0280008176.01.T01 MTR_1g040935 50.350 143 71 0 140 282 2 144 2.82e-43 156
MsG0280008176.01.T01 MTR_8g040870 45.509 167 70 3 158 321 37 185 1.61e-42 150
MsG0280008176.01.T01 MTR_6g061130 34.628 309 157 8 172 461 68 350 2.19e-42 154
MsG0280008176.01.T01 MTR_7g445700 44.218 147 82 0 141 287 116 262 2.96e-42 158
MsG0280008176.01.T01 MTR_1g062320 43.275 171 69 2 140 306 3 149 5.33e-42 153
MsG0280008176.01.T01 MTR_1g041005 51.471 136 66 0 141 276 60 195 9.41e-42 151
MsG0280008176.01.T01 MTR_1024s0010 58.559 111 46 0 141 251 16 126 9.79e-41 143
MsG0280008176.01.T01 MTR_6g022050 48.408 157 76 1 103 259 84 235 1.38e-40 145
MsG0280008176.01.T01 MTR_7g063160 41.618 173 88 2 90 258 13 176 1.82e-39 147
MsG0280008176.01.T01 MTR_8g466790 52.239 134 64 0 142 275 81 214 4.29e-39 141
MsG0280008176.01.T01 MTR_1g007020 30.488 328 178 7 140 451 40 333 3.96e-38 144
MsG0280008176.01.T01 MTR_1g032820 46.970 132 70 0 141 272 4 135 1.05e-37 136
MsG0280008176.01.T01 MTR_1g032900 67.708 96 31 0 235 330 159 254 1.24e-37 144
MsG0280008176.01.T01 MTR_1g090997 47.500 120 63 0 154 273 2 121 1.89e-34 134
MsG0280008176.01.T01 MTR_4g046100 55.963 109 48 0 156 264 1 109 4.41e-34 129
MsG0280008176.01.T01 MTR_2g438650 45.736 129 70 0 141 269 142 270 1.70e-32 129
MsG0280008176.01.T01 MTR_1g093780 41.791 134 59 1 154 287 89 203 1.34e-31 127
MsG0280008176.01.T01 MTR_3g062250 41.497 147 86 0 110 256 56 202 1.71e-31 127
MsG0280008176.01.T01 MTR_3g464250 51.402 107 52 0 140 246 73 179 1.97e-31 120
MsG0280008176.01.T01 MTR_7g056053 49.074 108 55 0 189 296 24 131 5.94e-31 122
MsG0280008176.01.T01 MTR_5g060720 53.535 99 46 0 139 237 59 157 2.36e-30 121
MsG0280008176.01.T01 MTR_0014s0120 36.313 179 89 3 95 273 73 226 2.36e-30 121
MsG0280008176.01.T01 MTR_5g037520 41.549 142 80 1 133 271 117 258 3.47e-30 122
MsG0280008176.01.T01 MTR_7g070750 61.798 89 34 0 140 228 3 91 7.11e-30 117
MsG0280008176.01.T01 MTR_8g104170 33.010 206 125 2 125 326 38 234 7.86e-30 120
MsG0280008176.01.T01 MTR_8g045340 29.204 339 187 7 108 446 23 308 9.30e-30 120
MsG0280008176.01.T01 MTR_4g045863 35.407 209 100 6 121 323 24 203 1.06e-29 120
MsG0280008176.01.T01 MTR_0062s0090 55.319 94 39 1 1 94 184 274 1.38e-29 117
MsG0280008176.01.T01 MTR_0062s0040 55.319 94 39 1 1 94 184 274 1.38e-29 117
MsG0280008176.01.T01 MTR_0062s0060 55.319 94 39 1 1 94 184 274 1.38e-29 117
MsG0280008176.01.T01 MTR_5g085370 44.348 115 64 0 156 270 1 115 2.59e-29 119
MsG0280008176.01.T01 MTR_2g032880 37.791 172 70 4 140 307 83 221 2.11e-28 117
MsG0280008176.01.T01 MTR_0488s0020 30.631 222 104 5 127 339 153 333 2.81e-28 117
MsG0280008176.01.T01 MTR_4g093740 29.825 228 115 5 119 332 91 287 5.63e-26 110
MsG0280008176.01.T01 MTR_4g035630 39.860 143 73 2 125 263 96 229 1.18e-25 107
MsG0280008176.01.T01 MTR_5g024590 35.119 168 89 3 141 307 16 164 1.54e-25 105
MsG0280008176.01.T01 MTR_3g086820 39.416 137 67 1 141 277 67 187 2.37e-25 107
MsG0280008176.01.T01 MTR_7g063170 58.667 75 31 0 142 216 35 109 4.86e-25 99.8
MsG0280008176.01.T01 MTR_6g043680 35.669 157 87 1 141 297 63 205 1.81e-24 102
MsG0280008176.01.T01 MTR_0063s0100 79.310 58 12 0 141 198 156 213 3.61e-24 103
MsG0280008176.01.T01 MTR_8g104770 36.170 141 77 2 125 261 114 245 8.53e-24 101
MsG0280008176.01.T01 MTR_7g023870 51.111 90 44 0 165 254 58 147 7.61e-23 94.7
MsG0280008176.01.T01 MTR_0062s0170 52.083 96 37 3 1 95 199 286 7.72e-23 99.0
MsG0280008176.01.T01 MTR_0062s0110 52.083 96 37 3 1 95 199 286 7.72e-23 99.0
MsG0280008176.01.T01 MTR_0062s0130 52.083 96 37 3 1 95 199 286 7.72e-23 99.0
MsG0280008176.01.T01 MTR_2g036240 52.083 96 37 3 1 95 199 286 7.72e-23 99.0
MsG0280008176.01.T01 MTR_2g036260 52.083 96 37 3 1 95 199 286 7.72e-23 99.0
MsG0280008176.01.T01 MTR_2g036290 52.083 96 37 3 1 95 199 286 7.72e-23 99.0
MsG0280008176.01.T01 MTR_8g046730 52.083 96 37 3 1 95 199 286 7.72e-23 99.0
MsG0280008176.01.T01 MTR_5g046930 40.984 122 59 2 125 242 60 172 9.14e-23 95.5
MsG0280008176.01.T01 MTR_8g067570 47.059 102 54 0 156 257 1 102 1.69e-22 92.4
MsG0280008176.01.T01 MTR_4g060870 43.902 123 58 2 216 329 128 248 1.89e-22 99.0
MsG0280008176.01.T01 MTR_5g060840 38.931 131 65 2 139 267 2 119 3.85e-22 95.5
MsG0280008176.01.T01 MTR_5g460950 38.931 131 65 2 139 267 2 119 3.85e-22 95.5
MsG0280008176.01.T01 MTR_4g108010 51.899 79 38 0 141 219 112 190 7.96e-22 93.6
MsG0280008176.01.T01 MTR_8g445160 39.355 155 76 5 162 315 1 138 2.09e-21 97.8
MsG0280008176.01.T01 MTR_7g013110 61.039 77 15 1 141 217 124 185 4.52e-21 95.9
MsG0280008176.01.T01 MTR_6g037380 36.646 161 95 3 188 347 20 174 3.08e-20 91.7
MsG0280008176.01.T01 MTR_2g043290 39.815 108 44 2 186 293 4 90 1.22e-19 89.4
MsG0280008176.01.T01 MTR_8g061220 60.000 65 26 0 193 257 2 66 4.75e-19 83.6
MsG0280008176.01.T01 MTR_2g048290 36.290 124 49 1 145 268 92 185 8.17e-19 85.1
MsG0280008176.01.T01 MTR_7g060590 53.623 69 32 0 193 261 100 168 1.38e-17 84.3
MsG0280008176.01.T01 MTR_6g049130 37.190 121 71 2 161 277 159 278 1.88e-17 84.0
MsG0280008176.01.T01 MTR_6g012440 59.322 59 24 0 210 268 20 78 2.00e-17 77.8
MsG0280008176.01.T01 MTR_0443s0040 45.833 96 42 3 1 95 201 287 1.08e-16 81.3
MsG0280008176.01.T01 MTR_8g041780 38.261 115 64 2 232 339 6 120 1.36e-16 79.0
MsG0280008176.01.T01 MTR_7g006745 35.772 123 69 2 125 246 103 216 2.56e-16 81.3
MsG0280008176.01.T01 MTR_8g022850 36.667 120 62 2 141 260 75 180 1.03e-15 77.8
MsG0280008176.01.T01 MTR_5g034920 38.000 100 59 1 192 288 70 169 3.14e-15 78.2
MsG0280008176.01.T01 MTR_3g465060 37.624 101 54 1 127 227 92 183 5.15e-15 76.6
MsG0280008176.01.T01 MTR_2g038110 45.349 86 45 1 220 303 2 87 1.16e-14 72.0
MsG0280008176.01.T01 MTR_3g032560 42.466 73 42 0 128 200 22 94 3.76e-14 70.5
MsG0280008176.01.T01 MTR_1457s0010 38.462 104 54 3 1 104 116 209 6.66e-14 71.2
MsG0280008176.01.T01 MTR_0002s1060 40.000 95 51 2 1 95 191 279 1.54e-13 71.6
MsG0280008176.01.T01 MTR_0002s0040 38.947 95 50 2 1 95 188 274 3.97e-13 70.1
MsG0280008176.01.T01 MTR_5g044720 38.961 77 47 0 217 293 65 141 6.61e-13 71.6
MsG0280008176.01.T01 MTR_5g013570 30.822 146 67 3 156 292 1 121 6.96e-13 66.2
MsG0280008176.01.T01 MTR_6g016995 48.438 64 33 0 140 203 31 94 1.15e-12 64.7
MsG0280008176.01.T01 MTR_6g043980 47.143 70 31 1 212 281 2 65 1.32e-12 64.7
MsG0280008176.01.T01 MTR_2g036980 27.389 157 66 2 139 295 123 231 2.10e-12 68.9
MsG0280008176.01.T01 MTR_0098s0100 37.234 94 55 1 199 288 133 226 1.07e-11 67.4
MsG0280008176.01.T01 MTR_0597s0030 50.980 51 25 0 159 209 2 52 1.62e-11 62.4
MsG0280008176.01.T01 MTR_2g054220 58.974 39 16 0 141 179 12 50 2.32e-11 59.3
MsG0280008176.01.T01 MTR_3g091430 50.000 68 33 1 194 261 107 173 4.27e-11 63.9
MsG0280008176.01.T01 MTR_1g034250 51.923 52 25 0 140 191 127 178 5.70e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 131 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATCGACAACATTAATT+TGG 0.190403 2:+26759474 MsG0280008176.01.T01:CDS
CGAAAGATTTACGCAAAATA+TGG 0.237888 2:+26761677 MsG0280008176.01.T01:CDS
CCCAGTTGTTTCTTTAGCTT+TGG 0.262449 2:+26762392 MsG0280008176.01.T01:CDS
ATAGGAGAAGAAGATGAAAT+TGG 0.274572 2:+26760320 MsG0280008176.01.T01:intron
CCCGGGTCGGTGCTAATTCC+TGG 0.297804 2:-26759601 None:intergenic
CGCATTACCGCAAATTGTAT+TGG 0.306653 2:+26759449 None:intergenic
ATGAAGATATTGGAAATCTT+TGG 0.320120 2:-26761752 None:intergenic
TTGGAGACACCCTTCTTCTA+AGG 0.327923 2:+26762591 MsG0280008176.01.T01:CDS
ACCTCTCAGACGGCTGTTCC+TGG 0.334065 2:+26762417 MsG0280008176.01.T01:CDS
AACAAGCTCTCAGTCGATTT+CGG 0.336408 2:+26762313 MsG0280008176.01.T01:CDS
GCATTACCGCAAATTGTATT+GGG 0.349569 2:+26759450 None:intergenic
AGTTGGGTGTTGATGGAGTT+TGG 0.351301 2:+26760397 MsG0280008176.01.T01:CDS
ATTCCTGGAAGGAATTTATC+AGG 0.361845 2:-26759586 None:intergenic
GAATAGGAACCATCTGTGTT+TGG 0.365078 2:-26762443 None:intergenic
TTCCATCACTGTCACTCTAT+TGG 0.368615 2:+26762039 MsG0280008176.01.T01:CDS
TCTGCTTCTGATGAAGATAT+TGG 0.372216 2:-26761762 None:intergenic
GACAACGGCAGTTTGGAAAA+TGG 0.382661 2:+26761613 MsG0280008176.01.T01:CDS
GAAATTGGAGTTGGTGTTGA+TGG 0.388434 2:+26760335 MsG0280008176.01.T01:CDS
TGTTGTTGTCGTGTTTGTTT+AGG 0.394167 2:-26762156 None:intergenic
TCCAAAGCTAAAGAAACAAC+TGG 0.395669 2:-26762393 None:intergenic
CCAATGGAGGTACTTGGACT+TGG 0.398161 2:+26762225 MsG0280008176.01.T01:CDS
TTCGAAGAAACGTCTGAAAC+CGG 0.412310 2:-26762495 None:intergenic
AAATTGAAGTTGGGTGTTGA+TGG 0.415033 2:+26760390 MsG0280008176.01.T01:CDS
ACTCCTGATAAATTCCTTCC+AGG 0.416002 2:+26759583 MsG0280008176.01.T01:CDS
TCTTGTCCTTAGCTGCTTGT+GGG 0.416448 2:-26762092 None:intergenic
TGTGGAAGACAACGGCAGTT+TGG 0.428919 2:+26761606 MsG0280008176.01.T01:CDS
CATACTTGGCTTAAGATTAA+CGG 0.430226 2:-26761710 None:intergenic
ACCATCTGTGTTTGGGAACC+AGG 0.435926 2:-26762435 None:intergenic
TTCTTGTCCTTAGCTGCTTG+TGG 0.440886 2:-26762093 None:intergenic
GGTGTCTCCAACACAGGTCT+AGG 0.441033 2:-26762579 None:intergenic
TGGGGTTGCCGCAGGAGTAT+TGG 0.442330 2:+26761812 MsG0280008176.01.T01:CDS
GGAACCAACATCGAAGGAAT+AGG 0.442330 2:-26762459 None:intergenic
CTAGGCAAAGGCAACTCATC+AGG 0.442720 2:-26762561 None:intergenic
AATAGGAACCATCTGTGTTT+GGG 0.442748 2:-26762442 None:intergenic
AGGTACTTGGACTTGGGTCC+CGG 0.446278 2:+26762232 MsG0280008176.01.T01:CDS
GGTGCTTCTTCAGCCACAAT+TGG 0.446661 2:-26762132 None:intergenic
CACGACAACAACATGGTGGG+GGG 0.449313 2:+26762166 MsG0280008176.01.T01:CDS
ACGACAACAACATGGTGGGG+GGG 0.450388 2:+26762167 MsG0280008176.01.T01:CDS
TACAGTCACTACTACTCAAA+AGG 0.454042 2:+26762268 MsG0280008176.01.T01:CDS
ACAATATTTCAACTTGTCGT+TGG 0.454324 2:+26762064 MsG0280008176.01.T01:CDS
ACTGTAGAAGTAATAGGAAC+CGG 0.456662 2:-26762251 None:intergenic
TCAAAGCAGGAGACGGAGTC+GGG 0.463348 2:-26762344 None:intergenic
TAAGAAGGTGAAATTGAAGT+TGG 0.463683 2:+26760380 MsG0280008176.01.T01:CDS
GCCTTTGCCTAGACCTGTGT+TGG 0.464289 2:+26762572 MsG0280008176.01.T01:CDS
GTAGTGACTGTAGAAGTAAT+AGG 0.464579 2:-26762257 None:intergenic
ACGTCTGAAACCGGCACTAA+AGG 0.468507 2:-26762486 None:intergenic
GGTACTCCTATCGACATTGA+TGG 0.469133 2:+26761871 MsG0280008176.01.T01:CDS
TGAGAGAGACGTAACATACT+TGG 0.471430 2:-26761724 None:intergenic
AAGAAGGGTGTCTCCAACAC+AGG 0.471778 2:-26762585 None:intergenic
CATCGGCCAATGGAGGTACT+TGG 0.472641 2:+26762219 MsG0280008176.01.T01:CDS
TCTGCAGGCTCGGTGTGACC+CGG 0.475347 2:-26759619 None:intergenic
TCGACAAGAAACCGTACGTT+TGG 0.478410 2:+26761895 MsG0280008176.01.T01:CDS
GAAGAAGATGAAATTGGAGT+TGG 0.479657 2:+26760326 MsG0280008176.01.T01:CDS
GAAAATGGTGCCCTAGGTAA+AGG 0.480196 2:+26761628 MsG0280008176.01.T01:CDS
AAATTCTTGTTGAGAGGGAG+GGG 0.480989 2:+26761971 MsG0280008176.01.T01:CDS
GTATGTTACGTCTCTCTCAA+TGG 0.483424 2:+26761728 MsG0280008176.01.T01:CDS
TTGGTGGGAGAGAACGTTGA+AGG 0.483843 2:+26761831 MsG0280008176.01.T01:CDS
GAAAGATTTACGCAAAATAT+GGG 0.484963 2:+26761678 MsG0280008176.01.T01:CDS
ATCTTAATAATCTTATCTGC+AGG 0.499766 2:-26759634 None:intergenic
TAGATTGGTGGGGTTGCCGC+AGG 0.501131 2:+26761804 MsG0280008176.01.T01:CDS
TCACTCTGGATTAGATTGGT+GGG 0.501527 2:+26761793 MsG0280008176.01.T01:CDS
GGTTCCTACTCCTTTAGTGC+CGG 0.507232 2:+26762476 MsG0280008176.01.T01:CDS
ATCTACTACACAGATGGTTC+TGG 0.510735 2:+26762368 MsG0280008176.01.T01:CDS
TGTATCACTCTGGATTAGAT+TGG 0.511579 2:+26761789 MsG0280008176.01.T01:CDS
AATCATAATATCCTTTACCT+AGG 0.511745 2:-26761639 None:intergenic
CCAAGGGAGATCTTCACTGC+TGG 0.512526 2:+26759658 MsG0280008176.01.T01:CDS
CAATGGAGGTACTTGGACTT+GGG 0.513155 2:+26762226 MsG0280008176.01.T01:CDS
GTACGTTTGGTCACTATGCT+AGG 0.513895 2:+26761908 MsG0280008176.01.T01:CDS
AAGTTAACGTCCTTAGAAGA+AGG 0.515722 2:-26762601 None:intergenic
GGTTGCCGCAGGAGTATTGG+TGG 0.516614 2:+26761815 MsG0280008176.01.T01:CDS
TCCAGGAATTAGCACCGACC+CGG 0.517069 2:+26759600 MsG0280008176.01.T01:CDS
AACACGACAACAACATGGTG+GGG 0.521219 2:+26762164 MsG0280008176.01.T01:CDS
CACTCTGGATTAGATTGGTG+GGG 0.521709 2:+26761794 MsG0280008176.01.T01:CDS
AGCTTGTTGCCAACGATGAA+CGG 0.523779 2:-26762298 None:intergenic
GGGGCTTCAACATCGGCCAA+TGG 0.523880 2:+26762209 MsG0280008176.01.T01:CDS
GGTTCCTATTCCTTCGATGT+TGG 0.524882 2:+26762455 MsG0280008176.01.T01:CDS
AAGAAGGTGAAATTGAAGTT+GGG 0.526393 2:+26760381 MsG0280008176.01.T01:CDS
ATCACTCTGGATTAGATTGG+TGG 0.526963 2:+26761792 MsG0280008176.01.T01:CDS
AGCTTTGGATACCTCTCAGA+CGG 0.531740 2:+26762407 MsG0280008176.01.T01:CDS
CTGCAGGCTCGGTGTGACCC+GGG 0.534288 2:-26759618 None:intergenic
GTCAAAGCAGGAGACGGAGT+CGG 0.538712 2:-26762345 None:intergenic
ACACGACAACAACATGGTGG+GGG 0.543545 2:+26762165 MsG0280008176.01.T01:CDS
TGATGAAATTCTTGTTGAGA+GGG 0.550470 2:+26761966 MsG0280008176.01.T01:CDS
CCAGCAGTGAAGATCTCCCT+TGG 0.551111 2:-26759658 None:intergenic
AAACACGACAACAACATGGT+GGG 0.551969 2:+26762163 MsG0280008176.01.T01:CDS
CCAAGTCCAAGTACCTCCAT+TGG 0.556914 2:-26762225 None:intergenic
GAAATTCTTGTTGAGAGGGA+GGG 0.557220 2:+26761970 MsG0280008176.01.T01:CDS
ATGCAATACTCCACACTCCC+TGG 0.557222 2:+26759694 MsG0280008176.01.T01:CDS
ATAAGATTATTAAGATGCCA+AGG 0.558202 2:+26759641 MsG0280008176.01.T01:CDS
TGAAATTCTTGTTGAGAGGG+AGG 0.559919 2:+26761969 MsG0280008176.01.T01:CDS
GGTTTCAGTCCGTTCATCGT+TGG 0.561333 2:+26762289 MsG0280008176.01.T01:CDS
ATGATGAAATTCTTGTTGAG+AGG 0.561437 2:+26761965 MsG0280008176.01.T01:CDS
GATACACCCACAAGCAGCTA+AGG 0.561885 2:+26762086 MsG0280008176.01.T01:CDS
CAGGAGACGGAGTCGGGAGT+CGG 0.563075 2:-26762338 None:intergenic
TCCTGGTTCCCAAACACAGA+TGG 0.570927 2:+26762434 MsG0280008176.01.T01:CDS
ATCATAATATCCTTTACCTA+GGG 0.575687 2:-26761638 None:intergenic
ATTACAAGTGATGAATAAGA+AGG 0.577808 2:+26760365 MsG0280008176.01.T01:CDS
AGTTTGGAAAATGGTGCCCT+AGG 0.578495 2:+26761622 MsG0280008176.01.T01:CDS
AGTTAACGTCCTTAGAAGAA+GGG 0.578902 2:-26762600 None:intergenic
AATAATCTTATCTGCAGGCT+CGG 0.580364 2:-26759629 None:intergenic
AGCAGACACATGTATCACTC+TGG 0.584684 2:+26761779 MsG0280008176.01.T01:CDS
TGTTGTCGTGTTTGTTTAGG+AGG 0.585642 2:-26762153 None:intergenic
AGGCTCGGTGTGACCCGGGT+CGG 0.585734 2:-26759614 None:intergenic
TTTGACATCTACTACACAGA+TGG 0.585818 2:+26762362 MsG0280008176.01.T01:CDS
GTAGATGTCAAAGCAGGAGA+CGG 0.586788 2:-26762351 None:intergenic
TGTGTAGTAGATGTCAAAGC+AGG 0.587784 2:-26762357 None:intergenic
TTACGCAAAATATGGGCAGT+AGG 0.596311 2:+26761685 MsG0280008176.01.T01:CDS
GTTGCCGCAGGAGTATTGGT+GGG 0.600691 2:+26761816 MsG0280008176.01.T01:CDS
GGAGTAGGAACCAACATCGA+AGG 0.609018 2:-26762465 None:intergenic
TTGGAACGCTCATGACTCTG+TGG 0.609097 2:+26759726 MsG0280008176.01.T01:CDS
GCTTCAACATCGGCCAATGG+AGG 0.609944 2:+26762212 MsG0280008176.01.T01:CDS
GCTAAGGACAAGAATGATCG+TGG 0.610071 2:+26762102 MsG0280008176.01.T01:CDS
CCAAAGCTAAAGAAACAACT+GGG 0.610647 2:-26762392 None:intergenic
AAGGAGATAGCAAATGTGGT+TGG 0.612415 2:+26761850 MsG0280008176.01.T01:CDS
TCCAACACAGGTCTAGGCAA+AGG 0.621493 2:-26762573 None:intergenic
CCAGGAATTAGCACCGACCC+GGG 0.628850 2:+26759601 MsG0280008176.01.T01:CDS
GAAACCGGCACTAAAGGAGT+AGG 0.632615 2:-26762480 None:intergenic
CTGTAGAAGTAATAGGAACC+GGG 0.635696 2:-26762250 None:intergenic
CAAACACGACAACAACATGG+TGG 0.637928 2:+26762162 MsG0280008176.01.T01:CDS
TAGCATAGTGACCAAACGTA+CGG 0.638093 2:-26761906 None:intergenic
GGTCGGTGCTAATTCCTGGA+AGG 0.642942 2:-26759597 None:intergenic
TAAGATTATTAAGATGCCAA+GGG 0.644007 2:+26759642 MsG0280008176.01.T01:CDS
GTCGAACCATCAATGTCGAT+AGG 0.645284 2:-26761877 None:intergenic
GTTGAAGGAGATAGCAAATG+TGG 0.646560 2:+26761846 MsG0280008176.01.T01:CDS
AAACAAACACGACAACAACA+TGG 0.646873 2:+26762159 MsG0280008176.01.T01:CDS
CTAAGGACAAGAATGATCGT+GGG 0.658803 2:+26762103 MsG0280008176.01.T01:CDS
ACCAGGAACAGCCGTCTGAG+AGG 0.659126 2:-26762418 None:intergenic
CTCTCCCACCAATACTCCTG+CGG 0.669204 2:-26761820 None:intergenic
TCGTGGGAAACAACCAATTG+TGG 0.684896 2:+26762119 MsG0280008176.01.T01:CDS
GACCAATAGAGTGACAGTGA+TGG 0.695192 2:-26762041 None:intergenic
GCAACTCATCAGGAGAAATG+CGG 0.697262 2:-26762551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAGTCTATTTAAAAAAA+AGG + Chr2:26761448-26761467 MsG0280008176.01.T01:intron 10.0%
!! TTTGTAAAAAAAATTGTTAT+TGG - Chr2:26760673-26760692 None:intergenic 10.0%
!!! ATCATATTTTTAATATGTTT+GGG + Chr2:26761484-26761503 MsG0280008176.01.T01:intron 10.0%
!!! ATTTAACAAATAAATTTGTT+TGG - Chr2:26760898-26760917 None:intergenic 10.0%
!!! ATTTATGTTTTTTTTTAAAC+CGG - Chr2:26761529-26761548 None:intergenic 10.0%
!!! GAAATTAATCTTTAATTTTA+TGG + Chr2:26759859-26759878 MsG0280008176.01.T01:intron 10.0%
!!! TATCATATTTTTAATATGTT+TGG + Chr2:26761483-26761502 MsG0280008176.01.T01:intron 10.0%
!!! TCAAGAAAAATAATTTTTTT+GGG - Chr2:26760820-26760839 None:intergenic 10.0%
!!! TGCATAATAATTTTTTTTTT+TGG - Chr2:26760129-26760148 None:intergenic 10.0%
!!! TTCAAGAAAAATAATTTTTT+TGG - Chr2:26760821-26760840 None:intergenic 10.0%
!!! TTTAACAAATAAATTTGTTT+GGG - Chr2:26760897-26760916 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + Chr2:26762183-26762202 MsG0280008176.01.T01:CDS 100.0%
!! ACAATCAATATGAATAAATT+TGG + Chr2:26761061-26761080 MsG0280008176.01.T01:intron 15.0%
!! CCTAAAAAGATATAATTTAT+TGG + Chr2:26761316-26761335 MsG0280008176.01.T01:intron 15.0%
!!! AAAAAAATTGTTGTTTTTCA+AGG - Chr2:26760078-26760097 None:intergenic 15.0%
!!! ATGTTTGTATAATTTTAGTT+TGG - Chr2:26759519-26759538 None:intergenic 15.0%
!!! ATTAGATCATGATTTAAAAT+AGG + Chr2:26760302-26760321 MsG0280008176.01.T01:intron 15.0%
!!! CAAGAAAAATAATTTTTTTG+GGG - Chr2:26760819-26760838 None:intergenic 15.0%
!!! CAATTTTTTTTACAAATTGT+AGG + Chr2:26760677-26760696 MsG0280008176.01.T01:intron 15.0%
!!! CCAATAAATTATATCTTTTT+AGG - Chr2:26761319-26761338 None:intergenic 15.0%
!!! GTAGCTAAATATTTTTTATT+TGG - Chr2:26760874-26760893 None:intergenic 15.0%
!!! TTAACAAATAAATTTGTTTG+GGG - Chr2:26760896-26760915 None:intergenic 15.0%
!!! TTATATTAATTTGACACTTT+CGG + Chr2:26760959-26760978 MsG0280008176.01.T01:intron 15.0%
!! AAAATTTGAAAAAGAGAAAC+AGG - Chr2:26760212-26760231 None:intergenic 20.0%
!!! ATATGAATAAATTTGGCTTT+TGG + Chr2:26761068-26761087 MsG0280008176.01.T01:intron 20.0%
!!! ATTATTTTTCTTGAATGAGT+TGG + Chr2:26760826-26760845 MsG0280008176.01.T01:intron 20.0%
!!! TGTAAGTAGATATAATTTTC+CGG + Chr2:26761507-26761526 MsG0280008176.01.T01:intron 20.0%
! AAACATCGACAACATTAATT+TGG + Chr2:26759474-26759493 MsG0280008176.01.T01:CDS 25.0%
! AAGAAGTAGACATATGTTAA+TGG + Chr2:26760425-26760444 MsG0280008176.01.T01:intron 25.0%
! AATCATAATATCCTTTACCT+AGG - Chr2:26761642-26761661 None:intergenic 25.0%
! ACAACATAGTAAAAAACCTT+TGG - Chr2:26760249-26760268 None:intergenic 25.0%
! ATAAGATTATTAAGATGCCA+AGG + Chr2:26759641-26759660 MsG0280008176.01.T01:CDS 25.0%
! ATCATAATATCCTTTACCTA+GGG - Chr2:26761641-26761660 None:intergenic 25.0%
! ATCTTAATAATCTTATCTGC+AGG - Chr2:26759637-26759656 None:intergenic 25.0%
! ATGAAGATATTGGAAATCTT+TGG - Chr2:26761755-26761774 None:intergenic 25.0%
! ATTAAAAAAAATCCTCCTGA+CGG - Chr2:26760493-26760512 None:intergenic 25.0%
! ATTACAAGTGATGAATAAGA+AGG + Chr2:26760365-26760384 MsG0280008176.01.T01:CDS 25.0%
! GAAAGATTTACGCAAAATAT+GGG + Chr2:26761678-26761697 MsG0280008176.01.T01:CDS 25.0%
! TAAGATTATTAAGATGCCAA+GGG + Chr2:26759642-26759661 MsG0280008176.01.T01:CDS 25.0%
!! AGTGATTTTCTTTAACATGT+TGG + Chr2:26761105-26761124 MsG0280008176.01.T01:intron 25.0%
!! TAACATGTTGGTTAAGATTA+GGG + Chr2:26761117-26761136 MsG0280008176.01.T01:intron 25.0%
!! TTAACATGTTGGTTAAGATT+AGG + Chr2:26761116-26761135 MsG0280008176.01.T01:intron 25.0%
!! TTATGATTTTCGTTTCGAAT+CGG + Chr2:26761654-26761673 MsG0280008176.01.T01:CDS 25.0%
!!! ATTTTACCATATTTTGGCAT+TGG - Chr2:26760734-26760753 None:intergenic 25.0%
!!! CTTTTTCAACGTAAACAAAT+AGG - Chr2:26761019-26761038 None:intergenic 25.0%
AACAAGAATTGAGTAGAAGA+TGG - Chr2:26760173-26760192 None:intergenic 30.0%
AACCCAAAAACAAAAAATGC+AGG + Chr2:26760706-26760725 MsG0280008176.01.T01:intron 30.0%
AAGAAGGTGAAATTGAAGTT+GGG + Chr2:26760381-26760400 MsG0280008176.01.T01:CDS 30.0%
AAGGTGTGTTTGGAAAATTA+GGG + Chr2:26761579-26761598 MsG0280008176.01.T01:intron 30.0%
ACAAGAATTGAGTAGAAGAT+GGG - Chr2:26760172-26760191 None:intergenic 30.0%
ACAATATTTCAACTTGTCGT+TGG + Chr2:26762064-26762083 MsG0280008176.01.T01:CDS 30.0%
ACCCAAAAACAAAAAATGCA+GGG + Chr2:26760707-26760726 MsG0280008176.01.T01:intron 30.0%
AGGAATTAATCACACATTCA+AGG + Chr2:26760757-26760776 MsG0280008176.01.T01:intron 30.0%
ATAGCACTCATAGAAAACAT+AGG - Chr2:26759937-26759956 None:intergenic 30.0%
ATAGGAGAAGAAGATGAAAT+TGG + Chr2:26760320-26760339 MsG0280008176.01.T01:intron 30.0%
ATGATGAAATTCTTGTTGAG+AGG + Chr2:26761965-26761984 MsG0280008176.01.T01:CDS 30.0%
CAATTCATAGTTATTTGACG+AGG - Chr2:26759810-26759829 None:intergenic 30.0%
CATACTTGGCTTAAGATTAA+CGG - Chr2:26761713-26761732 None:intergenic 30.0%
CCAAAATATGGTAAAATTGC+AGG + Chr2:26760737-26760756 MsG0280008176.01.T01:intron 30.0%
CGAAAGATTTACGCAAAATA+TGG + Chr2:26761677-26761696 MsG0280008176.01.T01:CDS 30.0%
GGAATTAATCACACATTCAA+GGG + Chr2:26760758-26760777 MsG0280008176.01.T01:intron 30.0%
TAAGAAGGTGAAATTGAAGT+TGG + Chr2:26760380-26760399 MsG0280008176.01.T01:CDS 30.0%
TAAGGTGTGTTTGGAAAATT+AGG + Chr2:26761578-26761597 MsG0280008176.01.T01:intron 30.0%
TAGTAATACTGTAACACTGT+TGG + Chr2:26760268-26760287 MsG0280008176.01.T01:intron 30.0%
TGATGAAATTCTTGTTGAGA+GGG + Chr2:26761966-26761985 MsG0280008176.01.T01:CDS 30.0%
TGTTTACGAAGAATGACATA+AGG + Chr2:26761560-26761579 MsG0280008176.01.T01:intron 30.0%
TTTGTATTATGTTGTGAGTG+TGG + Chr2:26759985-26760004 MsG0280008176.01.T01:intron 30.0%
! ACACTCTTCTTCTTTTCTTT+TGG + Chr2:26761252-26761271 MsG0280008176.01.T01:intron 30.0%
! CCTGCAATTTTACCATATTT+TGG - Chr2:26760740-26760759 None:intergenic 30.0%
!! AATTTCTAGCTAGATATAGC+TGG - Chr2:26759845-26759864 None:intergenic 30.0%
!!! TCCCTGCATTTTTTGTTTTT+GGG - Chr2:26760711-26760730 None:intergenic 30.0%
AAACAAACACGACAACAACA+TGG + Chr2:26762159-26762178 MsG0280008176.01.T01:CDS 35.0%
AAGCTAGCAGAAATATTACG+CGG - Chr2:26761415-26761434 None:intergenic 35.0%
AATAATCTTATCTGCAGGCT+CGG - Chr2:26759632-26759651 None:intergenic 35.0%
AATAGGAACCATCTGTGTTT+GGG - Chr2:26762445-26762464 None:intergenic 35.0%
ACATATGTTAATGGTCGTGA+TGG + Chr2:26760434-26760453 MsG0280008176.01.T01:intron 35.0%
ACTGTAGAAGTAATAGGAAC+CGG - Chr2:26762254-26762273 None:intergenic 35.0%
AGAATGACATAAGGTGTGTT+TGG + Chr2:26761569-26761588 MsG0280008176.01.T01:intron 35.0%
AGGTGTGTTTGGAAAATTAG+GGG + Chr2:26761580-26761599 MsG0280008176.01.T01:intron 35.0%
ATTCCTGGAAGGAATTTATC+AGG - Chr2:26759589-26759608 None:intergenic 35.0%
CAAGAATTGAGTAGAAGATG+GGG - Chr2:26760171-26760190 None:intergenic 35.0%
CCAAAGCTAAAGAAACAACT+GGG - Chr2:26762395-26762414 None:intergenic 35.0%
CGGTCAAAAACATTATGAAG+TGG - Chr2:26762534-26762553 None:intergenic 35.0%
CGTTCCAAAGAAAAATACCA+GGG - Chr2:26759714-26759733 None:intergenic 35.0%
GAAGAAGATGAAATTGGAGT+TGG + Chr2:26760326-26760345 MsG0280008176.01.T01:CDS 35.0%
GTAGTGACTGTAGAAGTAAT+AGG - Chr2:26762260-26762279 None:intergenic 35.0%
TACAGTCACTACTACTCAAA+AGG + Chr2:26762268-26762287 MsG0280008176.01.T01:CDS 35.0%
TCCAAAGCTAAAGAAACAAC+TGG - Chr2:26762396-26762415 None:intergenic 35.0%
TCTGCTTCTGATGAAGATAT+TGG - Chr2:26761765-26761784 None:intergenic 35.0%
TGTTGTTGTCGTGTTTGTTT+AGG - Chr2:26762159-26762178 None:intergenic 35.0%
TTCATAGTTATTTGACGAGG+AGG - Chr2:26759807-26759826 None:intergenic 35.0%
TTCTTCATCAACGATACCAA+AGG + Chr2:26760230-26760249 MsG0280008176.01.T01:intron 35.0%
TTTGACATCTACTACACAGA+TGG + Chr2:26762362-26762381 MsG0280008176.01.T01:CDS 35.0%
! TGACAGTGATGGAAAAACAA+AGG - Chr2:26762033-26762052 None:intergenic 35.0%
! TGTATCACTCTGGATTAGAT+TGG + Chr2:26761789-26761808 MsG0280008176.01.T01:CDS 35.0%
!! AAATTGAAGTTGGGTGTTGA+TGG + Chr2:26760390-26760409 MsG0280008176.01.T01:CDS 35.0%
!!! GTCCCTGCATTTTTTGTTTT+TGG - Chr2:26760712-26760731 None:intergenic 35.0%
!!! TAATTTTTTTGGGGTAGCCT+TGG - Chr2:26760810-26760829 None:intergenic 35.0%
AAACACGACAACAACATGGT+GGG + Chr2:26762163-26762182 MsG0280008176.01.T01:CDS 40.0%
AAATTCTTGTTGAGAGGGAG+GGG + Chr2:26761971-26761990 MsG0280008176.01.T01:CDS 40.0%
AAGAAAAATACCAGGGAGTG+TGG - Chr2:26759707-26759726 None:intergenic 40.0%
AAGGAGATAGCAAATGTGGT+TGG + Chr2:26761850-26761869 MsG0280008176.01.T01:CDS 40.0%
ACTCCTGATAAATTCCTTCC+AGG + Chr2:26759583-26759602 MsG0280008176.01.T01:CDS 40.0%
AGCTAGCAGAAATATTACGC+GGG - Chr2:26761414-26761433 None:intergenic 40.0%
ATAGTTATTTGACGAGGAGG+AGG - Chr2:26759804-26759823 None:intergenic 40.0%
ATCTACTACACAGATGGTTC+TGG + Chr2:26762368-26762387 MsG0280008176.01.T01:CDS 40.0%
CTAAGGACAAGAATGATCGT+GGG + Chr2:26762103-26762122 MsG0280008176.01.T01:CDS 40.0%
CTGTAGAAGTAATAGGAACC+GGG - Chr2:26762253-26762272 None:intergenic 40.0%
GAAATTCTTGTTGAGAGGGA+GGG + Chr2:26761970-26761989 MsG0280008176.01.T01:CDS 40.0%
GAATAGGAACCATCTGTGTT+TGG - Chr2:26762446-26762465 None:intergenic 40.0%
GCGTTCCAAAGAAAAATACC+AGG - Chr2:26759715-26759734 None:intergenic 40.0%
GGTGTGTTTGGAAAATTAGG+GGG + Chr2:26761581-26761600 MsG0280008176.01.T01:intron 40.0%
GTATGTTACGTCTCTCTCAA+TGG + Chr2:26761728-26761747 MsG0280008176.01.T01:CDS 40.0%
GTGTGTTTGGAAAATTAGGG+GGG + Chr2:26761582-26761601 MsG0280008176.01.T01:intron 40.0%
GTTGAAGGAGATAGCAAATG+TGG + Chr2:26761846-26761865 MsG0280008176.01.T01:CDS 40.0%
TAGCATAGTGACCAAACGTA+CGG - Chr2:26761909-26761928 None:intergenic 40.0%
TATGGGTCAAGTATCACAAG+TGG + Chr2:26759877-26759896 MsG0280008176.01.T01:intron 40.0%
TGAAATTCTTGTTGAGAGGG+AGG + Chr2:26761969-26761988 MsG0280008176.01.T01:CDS 40.0%
TGAGAGAGACGTAACATACT+TGG - Chr2:26761727-26761746 None:intergenic 40.0%
TGTGTAGTAGATGTCAAAGC+AGG - Chr2:26762360-26762379 None:intergenic 40.0%
TGTTGTCGTGTTTGTTTAGG+AGG - Chr2:26762156-26762175 None:intergenic 40.0%
TTACGCAAAATATGGGCAGT+AGG + Chr2:26761685-26761704 MsG0280008176.01.T01:CDS 40.0%
TTCCATCACTGTCACTCTAT+TGG + Chr2:26762039-26762058 MsG0280008176.01.T01:CDS 40.0%
! AACAAGCTCTCAGTCGATTT+CGG + Chr2:26762313-26762332 MsG0280008176.01.T01:CDS 40.0%
! ATCACTCTGGATTAGATTGG+TGG + Chr2:26761792-26761811 MsG0280008176.01.T01:CDS 40.0%
! CACTCCCTGGTATTTTTCTT+TGG + Chr2:26759707-26759726 MsG0280008176.01.T01:CDS 40.0%
! TCACTCTGGATTAGATTGGT+GGG + Chr2:26761793-26761812 MsG0280008176.01.T01:CDS 40.0%
! TTCGAAGAAACGTCTGAAAC+CGG - Chr2:26762498-26762517 None:intergenic 40.0%
! TTGTCTTTTAGTGTGCCACA+TGG + Chr2:26760601-26760620 MsG0280008176.01.T01:intron 40.0%
!! AAAAATCCTCCTGACGGATT+AGG - Chr2:26760487-26760506 None:intergenic 40.0%
!! CCCAGTTGTTTCTTTAGCTT+TGG + Chr2:26762392-26762411 MsG0280008176.01.T01:CDS 40.0%
!! GAAATTGGAGTTGGTGTTGA+TGG + Chr2:26760335-26760354 MsG0280008176.01.T01:CDS 40.0%
AACACGACAACAACATGGTG+GGG + Chr2:26762164-26762183 MsG0280008176.01.T01:CDS 45.0%
AGCAGACACATGTATCACTC+TGG + Chr2:26761779-26761798 MsG0280008176.01.T01:CDS 45.0%
AGTTTGGAAAATGGTGCCCT+AGG + Chr2:26761622-26761641 MsG0280008176.01.T01:CDS 45.0%
CAAACACGACAACAACATGG+TGG + Chr2:26762162-26762181 MsG0280008176.01.T01:CDS 45.0%
CAGGGACCAATGCCAAAATA+TGG + Chr2:26760725-26760744 MsG0280008176.01.T01:intron 45.0%
GAAAATGGTGCCCTAGGTAA+AGG + Chr2:26761628-26761647 MsG0280008176.01.T01:CDS 45.0%
GACAACGGCAGTTTGGAAAA+TGG + Chr2:26761613-26761632 MsG0280008176.01.T01:CDS 45.0%
GACCAATAGAGTGACAGTGA+TGG - Chr2:26762044-26762063 None:intergenic 45.0%
GCAACTCATCAGGAGAAATG+CGG - Chr2:26762554-26762573 None:intergenic 45.0%
GCTAAGGACAAGAATGATCG+TGG + Chr2:26762102-26762121 MsG0280008176.01.T01:CDS 45.0%
GCTAGCAGAAATATTACGCG+GGG - Chr2:26761413-26761432 None:intergenic 45.0%
GGAACCAACATCGAAGGAAT+AGG - Chr2:26762462-26762481 None:intergenic 45.0%
GGTACTCCTATCGACATTGA+TGG + Chr2:26761871-26761890 MsG0280008176.01.T01:CDS 45.0%
GGTTCCTATTCCTTCGATGT+TGG + Chr2:26762455-26762474 MsG0280008176.01.T01:CDS 45.0%
GTACGTTTGGTCACTATGCT+AGG + Chr2:26761908-26761927 MsG0280008176.01.T01:CDS 45.0%
GTAGATGTCAAAGCAGGAGA+CGG - Chr2:26762354-26762373 None:intergenic 45.0%
GTCGAACCATCAATGTCGAT+AGG - Chr2:26761880-26761899 None:intergenic 45.0%
TCGACAAGAAACCGTACGTT+TGG + Chr2:26761895-26761914 MsG0280008176.01.T01:CDS 45.0%
TCGTGGGAAACAACCAATTG+TGG + Chr2:26762119-26762138 MsG0280008176.01.T01:CDS 45.0%
TCTTGTCCTTAGCTGCTTGT+GGG - Chr2:26762095-26762114 None:intergenic 45.0%
TTCTTGTCCTTAGCTGCTTG+TGG - Chr2:26762096-26762115 None:intergenic 45.0%
TTGGAAAATTAGGGGGGTTG+TGG + Chr2:26761588-26761607 MsG0280008176.01.T01:intron 45.0%
TTTGCAAGATGTCCTCAAGG+AGG - Chr2:26759780-26759799 None:intergenic 45.0%
! AAAGCTTTGGTCTCACCAGA+GGG - Chr2:26759757-26759776 None:intergenic 45.0%
! CACTCTGGATTAGATTGGTG+GGG + Chr2:26761794-26761813 MsG0280008176.01.T01:CDS 45.0%
! GTCGTGATGGTGAATTCAAG+AGG + Chr2:26760447-26760466 MsG0280008176.01.T01:intron 45.0%
!! AGCTTGTTGCCAACGATGAA+CGG - Chr2:26762301-26762320 None:intergenic 45.0%
!! AGCTTTGGATACCTCTCAGA+CGG + Chr2:26762407-26762426 MsG0280008176.01.T01:CDS 45.0%
!! AGTTGGGTGTTGATGGAGTT+TGG + Chr2:26760397-26760416 MsG0280008176.01.T01:CDS 45.0%
!! CAATGGAGGTACTTGGACTT+GGG + Chr2:26762226-26762245 MsG0280008176.01.T01:CDS 45.0%
!!! AAATTAATCTTTAATTTTAT+GGG + Chr2:26759860-26759879 MsG0280008176.01.T01:intron 5.0%
!!! TTTATTTAACTTATTTTAAT+TGG + Chr2:26760574-26760593 MsG0280008176.01.T01:intron 5.0%
ACACGACAACAACATGGTGG+GGG + Chr2:26762165-26762184 MsG0280008176.01.T01:CDS 50.0%
ACCATCTGTGTTTGGGAACC+AGG - Chr2:26762438-26762457 None:intergenic 50.0%
AGTGCCACGTGACCCAATTA+TGG - Chr2:26760631-26760650 None:intergenic 50.0%
ATGCAATACTCCACACTCCC+TGG + Chr2:26759694-26759713 MsG0280008176.01.T01:CDS 50.0%
CCAAGTCCAAGTACCTCCAT+TGG - Chr2:26762228-26762247 None:intergenic 50.0%
CCACATGGCGTGCCATAATT+GGG + Chr2:26760616-26760635 MsG0280008176.01.T01:intron 50.0%
CTAGGCAAAGGCAACTCATC+AGG - Chr2:26762564-26762583 None:intergenic 50.0%
GAAACCGGCACTAAAGGAGT+AGG - Chr2:26762483-26762502 None:intergenic 50.0%
GACCAAAGCTTTCCTCCTTG+AGG + Chr2:26759765-26759784 MsG0280008176.01.T01:intron 50.0%
GATACACCCACAAGCAGCTA+AGG + Chr2:26762086-26762105 MsG0280008176.01.T01:CDS 50.0%
GGAGTAGGAACCAACATCGA+AGG - Chr2:26762468-26762487 None:intergenic 50.0%
GGCTTTGCAAGATGTCCTCA+AGG - Chr2:26759783-26759802 None:intergenic 50.0%
GGTGCTTCTTCAGCCACAAT+TGG - Chr2:26762135-26762154 None:intergenic 50.0%
GGTTCCTACTCCTTTAGTGC+CGG + Chr2:26762476-26762495 MsG0280008176.01.T01:CDS 50.0%
GGTTTCAGTCCGTTCATCGT+TGG + Chr2:26762289-26762308 MsG0280008176.01.T01:CDS 50.0%
GTCCTCAAGGAGGAAAGCTT+TGG - Chr2:26759770-26759789 None:intergenic 50.0%
GTCTCACAACCTAATCCGTC+AGG + Chr2:26760475-26760494 MsG0280008176.01.T01:intron 50.0%
TCAACACCATGTGGTAGCCA+AGG + Chr2:26760790-26760809 MsG0280008176.01.T01:intron 50.0%
TCACAACCTAATCCGTCAGG+AGG + Chr2:26760478-26760497 MsG0280008176.01.T01:intron 50.0%
TCCAACACAGGTCTAGGCAA+AGG - Chr2:26762576-26762595 None:intergenic 50.0%
TCCTGGTTCCCAAACACAGA+TGG + Chr2:26762434-26762453 MsG0280008176.01.T01:CDS 50.0%
TGTGGAAGACAACGGCAGTT+TGG + Chr2:26761606-26761625 MsG0280008176.01.T01:CDS 50.0%
TTGGAACGCTCATGACTCTG+TGG + Chr2:26759726-26759745 MsG0280008176.01.T01:CDS 50.0%
TTGGTGGGAGAGAACGTTGA+AGG + Chr2:26761831-26761850 MsG0280008176.01.T01:CDS 50.0%
! ACGTCTGAAACCGGCACTAA+AGG - Chr2:26762489-26762508 None:intergenic 50.0%
! GAAAGCTTTGGTCTCACCAG+AGG - Chr2:26759758-26759777 None:intergenic 50.0%
! GGCTACCACATGGTGTTGAA+GGG - Chr2:26760789-26760808 None:intergenic 50.0%
! TGGCTACCACATGGTGTTGA+AGG - Chr2:26760790-26760809 None:intergenic 50.0%
!! AAGAAGGGTGTCTCCAACAC+AGG - Chr2:26762588-26762607 None:intergenic 50.0%
!! CCAATGGAGGTACTTGGACT+TGG + Chr2:26762225-26762244 MsG0280008176.01.T01:CDS 50.0%
!! GAGGGAGGGGTTCACTTTTA+AGG + Chr2:26761984-26762003 MsG0280008176.01.T01:CDS 50.0%
!! GGAGGGGTTCACTTTTAAGG+TGG + Chr2:26761987-26762006 MsG0280008176.01.T01:CDS 50.0%
AGGGGGGTTGTGGAAGACAA+CGG + Chr2:26761598-26761617 MsG0280008176.01.T01:intron 55.0%
AGGTACTTGGACTTGGGTCC+CGG + Chr2:26762232-26762251 MsG0280008176.01.T01:CDS 55.0%
CCAAGGGAGATCTTCACTGC+TGG + Chr2:26759658-26759677 MsG0280008176.01.T01:CDS 55.0%
CCAGCAGTGAAGATCTCCCT+TGG - Chr2:26759661-26759680 None:intergenic 55.0%
CCCAATTATGGCACGCCATG+TGG - Chr2:26760619-26760638 None:intergenic 55.0%
CGTAGCCCTTCAACACCATG+TGG + Chr2:26760781-26760800 MsG0280008176.01.T01:intron 55.0%
CGTGCCATAATTGGGTCACG+TGG + Chr2:26760624-26760643 MsG0280008176.01.T01:intron 55.0%
CTCTCCCACCAATACTCCTG+CGG - Chr2:26761823-26761842 None:intergenic 55.0%
GCCACATGGCGTGCCATAAT+TGG + Chr2:26760615-26760634 MsG0280008176.01.T01:intron 55.0%
GCCTTTGCCTAGACCTGTGT+TGG + Chr2:26762572-26762591 MsG0280008176.01.T01:CDS 55.0%
GCTTCAACATCGGCCAATGG+AGG + Chr2:26762212-26762231 MsG0280008176.01.T01:CDS 55.0%
GGTGTCTCCAACACAGGTCT+AGG - Chr2:26762582-26762601 None:intergenic 55.0%
GTCAAAGCAGGAGACGGAGT+CGG - Chr2:26762348-26762367 None:intergenic 55.0%
TCAAAGCAGGAGACGGAGTC+GGG - Chr2:26762347-26762366 None:intergenic 55.0%
! ACGACAACAACATGGTGGGG+GGG + Chr2:26762167-26762186 MsG0280008176.01.T01:CDS 55.0%
! CACGACAACAACATGGTGGG+GGG + Chr2:26762166-26762185 MsG0280008176.01.T01:CDS 55.0%
!! CATCGGCCAATGGAGGTACT+TGG + Chr2:26762219-26762238 MsG0280008176.01.T01:CDS 55.0%
!! GGTCGGTGCTAATTCCTGGA+AGG - Chr2:26759600-26759619 None:intergenic 55.0%
!! GTTGCCGCAGGAGTATTGGT+GGG + Chr2:26761816-26761835 MsG0280008176.01.T01:CDS 55.0%
!! TCCAGGAATTAGCACCGACC+CGG + Chr2:26759600-26759619 MsG0280008176.01.T01:CDS 55.0%
ACCAGGAACAGCCGTCTGAG+AGG - Chr2:26762421-26762440 None:intergenic 60.0%
ACCTCTCAGACGGCTGTTCC+TGG + Chr2:26762417-26762436 MsG0280008176.01.T01:CDS 60.0%
GACTCTGTGGTTCCTCCCTC+TGG + Chr2:26759739-26759758 MsG0280008176.01.T01:intron 60.0%
GCTTTGGTCTCACCAGAGGG+AGG - Chr2:26759754-26759773 None:intergenic 60.0%
GGGGCTTCAACATCGGCCAA+TGG + Chr2:26762209-26762228 MsG0280008176.01.T01:CDS 60.0%
TAGATTGGTGGGGTTGCCGC+AGG + Chr2:26761804-26761823 MsG0280008176.01.T01:CDS 60.0%
! ACAACAACATGGTGGGGGGG+GGG + Chr2:26762170-26762189 MsG0280008176.01.T01:CDS 60.0%
! CGACAACAACATGGTGGGGG+GGG + Chr2:26762168-26762187 MsG0280008176.01.T01:CDS 60.0%
! GACAACAACATGGTGGGGGG+GGG + Chr2:26762169-26762188 MsG0280008176.01.T01:CDS 60.0%
! GGGTAGCCTTGGCTACCACA+TGG - Chr2:26760799-26760818 None:intergenic 60.0%
! TGGGGTTGCCGCAGGAGTAT+TGG + Chr2:26761812-26761831 MsG0280008176.01.T01:CDS 60.0%
!! CCAGGAATTAGCACCGACCC+GGG + Chr2:26759601-26759620 MsG0280008176.01.T01:CDS 60.0%
!! GGTTGCCGCAGGAGTATTGG+TGG + Chr2:26761815-26761834 MsG0280008176.01.T01:CDS 60.0%
CAGGAGACGGAGTCGGGAGT+CGG - Chr2:26762341-26762360 None:intergenic 65.0%
! AACAACATGGTGGGGGGGGG+GGG + Chr2:26762172-26762191 MsG0280008176.01.T01:CDS 65.0%
! CAACAACATGGTGGGGGGGG+GGG + Chr2:26762171-26762190 MsG0280008176.01.T01:CDS 65.0%
!! CCCGGGTCGGTGCTAATTCC+TGG - Chr2:26759604-26759623 None:intergenic 65.0%
!! TCTGCAGGCTCGGTGTGACC+CGG - Chr2:26759622-26759641 None:intergenic 65.0%
GGGGGGGGGGGCTTCAACAT+CGG + Chr2:26762202-26762221 MsG0280008176.01.T01:CDS 70.0%
! ACAACATGGTGGGGGGGGGG+GGG + Chr2:26762173-26762192 MsG0280008176.01.T01:CDS 70.0%
!! AGGCTCGGTGTGACCCGGGT+CGG - Chr2:26759617-26759636 None:intergenic 70.0%
!! CTGCAGGCTCGGTGTGACCC+GGG - Chr2:26759621-26759640 None:intergenic 70.0%
! AACATGGTGGGGGGGGGGGG+GGG + Chr2:26762175-26762194 MsG0280008176.01.T01:CDS 75.0%
! CAACATGGTGGGGGGGGGGG+GGG + Chr2:26762174-26762193 MsG0280008176.01.T01:CDS 75.0%
!! ACATGGTGGGGGGGGGGGGG+GGG + Chr2:26762176-26762195 MsG0280008176.01.T01:CDS 80.0%
!! ATGGTGGGGGGGGGGGGGGG+GGG + Chr2:26762178-26762197 MsG0280008176.01.T01:CDS 85.0%
!! CATGGTGGGGGGGGGGGGGG+GGG + Chr2:26762177-26762196 MsG0280008176.01.T01:CDS 85.0%
! TGGTGGGGGGGGGGGGGGGG+GGG + Chr2:26762179-26762198 MsG0280008176.01.T01:CDS 90.0%
! GGTGGGGGGGGGGGGGGGGG+GGG + Chr2:26762180-26762199 MsG0280008176.01.T01:CDS 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + Chr2:26762181-26762200 MsG0280008176.01.T01:CDS 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + Chr2:26762182-26762201 MsG0280008176.01.T01:CDS 95.0%
Chromosome Type Strat End Strand Name
Chr2 gene 26759463 26762611 26759463 ID=MsG0280008176.01;Name=MsG0280008176.01
Chr2 mRNA 26759463 26762611 26759463 ID=MsG0280008176.01.T01;Parent=MsG0280008176.01;Name=MsG0280008176.01.T01;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.66|1|1|3|0|463
Chr2 exon 26759463 26759747 26759463 ID=MsG0280008176.01.T01:exon:18736;Parent=MsG0280008176.01.T01
Chr2 exon 26760324 26760418 26760324 ID=MsG0280008176.01.T01:exon:18737;Parent=MsG0280008176.01.T01
Chr2 exon 26761600 26762611 26761600 ID=MsG0280008176.01.T01:exon:18738;Parent=MsG0280008176.01.T01
Chr2 CDS 26759463 26759747 26759463 ID=MsG0280008176.01.T01:cds;Parent=MsG0280008176.01.T01
Chr2 CDS 26760324 26760418 26760324 ID=MsG0280008176.01.T01:cds;Parent=MsG0280008176.01.T01
Chr2 CDS 26761600 26762611 26761600 ID=MsG0280008176.01.T01:cds;Parent=MsG0280008176.01.T01
Gene Sequence

>MsG0280008176.01.T01

TTGTATTGGGAAAACATCGACAACATTAATTTGGTTGACTACAAGTTCTACAACCAAACTAAAATTATACAAACATCTGAAGAATTTGTAAAACTTTATCTAAAGATAGCAAATGACTACACTCCTGATAAATTCCTTCCAGGAATTAGCACCGACCCGGGTCACACCGAGCCTGCAGATAAGATTATTAAGATGCCAAGGGAGATCTTCACTGCTGGCTGCAAACATCTTATGCAATACTCCACACTCCCTGGTATTTTTCTTTGGAACGCTCATGACTCTGTGGAGAAGAAGATGAAATTGGAGTTGGTGTTGATGGATTATGAATTACAAGTGATGAATAAGAAGGTGAAATTGAAGTTGGGTGTTGATGGAGTTTGGGGGGTTGTGGAAGACAACGGCAGTTTGGAAAATGGTGCCCTAGGTAAAGGATATTATGATTTTCGTTTCGAATCGGCGAAAGATTTACGCAAAATATGGGCAGTAGGCACCGTTAATCTTAAGCCAAGTATGTTACGTCTCTCTCAATGGACCAAAGATTTCCAATATCTTCATCAGAAGCAGACACATGTATCACTCTGGATTAGATTGGTGGGGTTGCCGCAGGAGTATTGGTGGGAGAGAACGTTGAAGGAGATAGCAAATGTGGTTGGTACTCCTATCGACATTGATGGTTCGACAAGAAACCGTACGTTTGGTCACTATGCTAGGATTTTAGTGCACATTTTTCTTTCAAAGAGAGCATATGATGAAATTCTTGTTGAGAGGGAGGGGTTCACTTTTAAGGTGGAAGTTGAGTATGAGAGAAGACCTTTGTTTTTCCATCACTGTCACTCTATTGGTCACAATATTTCAACTTGTCGTTGGATACACCCACAAGCAGCTAAGGACAAGAATGATCGTGGGAAACAACCAATTGTGGCTGAAGAAGCACCTCCTAAACAAACACGACAACAACATGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTTCAACATCGGCCAATGGAGGTACTTGGACTTGGGTCCCGGTTCCTATTACTTCTACAGTCACTACTACTCAAAAGGTTTCAGTCCGTTCATCGTTGGCAACAAGCTCTCAGTCGATTTCGGTTCCGACTCCCGACTCCGTCTCCTGCTTTGACATCTACTACACAGATGGTTCTGGTCCCAGTTGTTTCTTTAGCTTTGGATACCTCTCAGACGGCTGTTCCTGGTTCCCAAACACAGATGGTTCCTATTCCTTCGATGTTGGTTCCTACTCCTTTAGTGCCGGTTTCAGACGTTTCTTCGAACTCTTTCAGCTTTCCACTTCATAATGTTTTTGACCGCATTTCTCCTGATGAGTTGCCTTTGCCTAGACCTGTGTTGGAGACACCCTTCTTCTAA
Protein sequence

>MsG0280008176.01.T01

LYWENIDNINLVDYKFYNQTKIIQTSEEFVKLYLKIANDYTPDKFLPGISTDPGHTEPADKIIKMPREIFTAGCKHLMQYSTLPGIFLWNAHDSVEKKMKLELVLMDYELQVMNKKVKLKLGVDGVWGVVEDNGSLENGALGKGYYDFRFESAKDLRKIWAVGTVNLKPSMLRLSQWTKDFQYLHQKQTHVSLWIRLVGLPQEYWWERTLKEIANVVGTPIDIDGSTRNRTFGHYARILVHIFLSKRAYDEILVEREGFTFKVEVEYERRPLFFHHCHSIGHNISTCRWIHPQAAKDKNDRGKQPIVAEEAPPKQTRQQHGGGGGGGGGGGLQHRPMEVLGLGSRFLLLLQSLLLKRFQSVHRWQQALSRFRFRLPTPSPALTSTTQMVLVPVVSLALDTSQTAVPGSQTQMVPIPSMLVPTPLVPVSDVSSNSFSFPLHNVFDRISPDELPLPRPVLETPFF*