Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008369.01.T01 | AFK49645.1 | 98.723 | 235 | 3 | 0 | 1 | 235 | 1 | 235 | 1.60E-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008369.01.T01 | Q93ZH2 | 47.027 | 185 | 90 | 4 | 26 | 206 | 129 | 309 | 3.16E-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008369.01.T01 | I3TAV3 | 98.723 | 235 | 3 | 0 | 1 | 235 | 1 | 235 | 7.64e-173 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0280008369.01.T01 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280008369.01 | MsG0380012357.01 | 0.829644 | 4.585653e-55 | 4.721804e-52 |
| MsG0280008369.01 | MsG0480021948.01 | 0.807607 | 4.654944e-50 | 2.604007e-47 |
| MsG0280008369.01 | MsG0880046296.01 | 0.802798 | 4.729068e-49 | 2.337936e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008369.01.T01 | MTR_2g041090 | 98.723 | 235 | 3 | 0 | 1 | 235 | 1 | 235 | 1.94e-176 | 484 |
| MsG0280008369.01.T01 | MTR_8g019540 | 47.423 | 194 | 91 | 6 | 11 | 204 | 103 | 285 | 5.01e-45 | 153 |
| MsG0280008369.01.T01 | MTR_2g099490 | 50.331 | 151 | 61 | 4 | 6 | 145 | 108 | 255 | 9.00e-39 | 137 |
| MsG0280008369.01.T01 | MTR_2g099490 | 52.143 | 140 | 59 | 3 | 6 | 145 | 108 | 239 | 1.49e-37 | 134 |
| MsG0280008369.01.T01 | MTR_8g037270 | 50.355 | 141 | 61 | 4 | 33 | 169 | 114 | 249 | 1.41e-35 | 128 |
| MsG0280008369.01.T01 | MTR_3g061510 | 59.459 | 111 | 38 | 4 | 23 | 133 | 123 | 226 | 1.84e-35 | 128 |
| MsG0280008369.01.T01 | MTR_3g061510 | 59.459 | 111 | 38 | 4 | 23 | 133 | 143 | 246 | 2.10e-35 | 129 |
| MsG0280008369.01.T01 | MTR_2g030170 | 56.383 | 94 | 40 | 1 | 59 | 152 | 95 | 187 | 3.28e-30 | 111 |
| MsG0280008369.01.T01 | MTR_2g030170 | 53.774 | 106 | 46 | 2 | 59 | 162 | 128 | 232 | 8.63e-30 | 111 |
| MsG0280008369.01.T01 | MTR_1g056530 | 45.775 | 142 | 61 | 3 | 5 | 145 | 105 | 231 | 1.94e-29 | 112 |
| MsG0280008369.01.T01 | MTR_7g106450 | 52.500 | 120 | 39 | 5 | 32 | 150 | 134 | 236 | 7.09e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008369.01.T01 | AT1G72830 | 47.027 | 185 | 90 | 4 | 26 | 206 | 129 | 309 | 3.22e-41 | 144 |
| MsG0280008369.01.T01 | AT1G72830 | 46.774 | 186 | 90 | 5 | 26 | 206 | 129 | 310 | 1.89e-39 | 139 |
| MsG0280008369.01.T01 | AT1G54160 | 61.404 | 114 | 41 | 2 | 47 | 158 | 145 | 257 | 1.36e-38 | 136 |
| MsG0280008369.01.T01 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.80e-38 | 136 |
| MsG0280008369.01.T01 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.80e-38 | 136 |
| MsG0280008369.01.T01 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.80e-38 | 136 |
| MsG0280008369.01.T01 | AT1G17590 | 61.947 | 113 | 32 | 3 | 32 | 142 | 133 | 236 | 1.80e-38 | 136 |
| MsG0280008369.01.T01 | AT3G14020 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.90e-35 | 127 |
| MsG0280008369.01.T01 | AT3G14020 | 62.626 | 99 | 37 | 0 | 48 | 146 | 141 | 239 | 2.90e-35 | 127 |
| MsG0280008369.01.T01 | AT1G30500 | 56.364 | 110 | 44 | 3 | 32 | 141 | 58 | 163 | 6.72e-34 | 120 |
| MsG0280008369.01.T01 | AT1G30500 | 56.364 | 110 | 40 | 3 | 32 | 141 | 58 | 159 | 8.77e-34 | 120 |
| MsG0280008369.01.T01 | AT2G34720 | 51.613 | 124 | 53 | 4 | 19 | 138 | 38 | 158 | 1.34e-33 | 120 |
| MsG0280008369.01.T01 | AT2G34720 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.80e-33 | 118 |
| MsG0280008369.01.T01 | AT2G34720 | 52.586 | 116 | 50 | 3 | 25 | 138 | 11 | 123 | 3.80e-33 | 118 |
| MsG0280008369.01.T01 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.91e-32 | 119 |
| MsG0280008369.01.T01 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 131 | 232 | 2.91e-32 | 119 |
| MsG0280008369.01.T01 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.17e-32 | 119 |
| MsG0280008369.01.T01 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.17e-32 | 119 |
| MsG0280008369.01.T01 | AT5G12840 | 53.271 | 107 | 45 | 2 | 33 | 139 | 132 | 233 | 3.17e-32 | 119 |
| MsG0280008369.01.T01 | AT3G20910 | 49.587 | 121 | 54 | 4 | 33 | 151 | 126 | 241 | 1.42e-30 | 115 |
| MsG0280008369.01.T01 | AT1G72830 | 41.622 | 185 | 75 | 5 | 26 | 206 | 129 | 284 | 1.65e-27 | 107 |
| MsG0280008369.01.T01 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.94e-25 | 97.4 |
| MsG0280008369.01.T01 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 23 | 95 | 5.94e-25 | 97.4 |
| MsG0280008369.01.T01 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 69 | 141 | 1.53e-24 | 97.4 |
| MsG0280008369.01.T01 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.62e-24 | 98.6 |
| MsG0280008369.01.T01 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.62e-24 | 98.6 |
| MsG0280008369.01.T01 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.62e-24 | 98.6 |
| MsG0280008369.01.T01 | AT5G06510 | 64.474 | 76 | 22 | 2 | 64 | 137 | 118 | 190 | 1.62e-24 | 98.6 |
| MsG0280008369.01.T01 | AT3G05690 | 49.123 | 114 | 37 | 4 | 29 | 137 | 102 | 199 | 5.90e-24 | 97.4 |
| MsG0280008369.01.T01 | AT3G05690 | 42.466 | 146 | 61 | 5 | 29 | 169 | 139 | 266 | 8.99e-24 | 97.8 |
Find 49 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTCACTGGTTCACATTC+TGG | 0.240648 | 2:-30093624 | MsG0280008369.01.T01:CDS |
| ACTAATGAACCAGCGAAAAT+TGG | 0.269126 | 2:+30094419 | None:intergenic |
| CATGCTTTGAATAGAGTTAG+AGG | 0.318785 | 2:-30093699 | MsG0280008369.01.T01:CDS |
| GCGAAAATTGGATCACTATA+AGG | 0.333039 | 2:+30094431 | None:intergenic |
| GAGCAATTGAACTCGGTATC+AGG | 0.378172 | 2:+30094576 | None:intergenic |
| CCTAAAACTGAAACTGTTGC+TGG | 0.404257 | 2:+30093488 | None:intergenic |
| TTGAATAGAGTTAGAGGATC+TGG | 0.407085 | 2:-30093693 | MsG0280008369.01.T01:CDS |
| TCAAATGTTGCCTCAAATGA+TGG | 0.414655 | 2:-30094210 | MsG0280008369.01.T01:CDS |
| CTCTATTCAAAGCATGTTTG+TGG | 0.437986 | 2:+30093706 | None:intergenic |
| GCTGTTTGGTGCTTAGAAAT+CGG | 0.443184 | 2:+30093667 | None:intergenic |
| TGGCGAGATTCGTGAAGATA+TGG | 0.445004 | 2:+30093726 | None:intergenic |
| TGCAGTGGAGGACTCACATT+TGG | 0.450885 | 2:-30093408 | MsG0280008369.01.T01:CDS |
| ATCATTTGAGGCAACATTTG+AGG | 0.451884 | 2:+30094212 | None:intergenic |
| CCACTTGATCTTGCACAAGA+TGG | 0.459081 | 2:-30094161 | MsG0280008369.01.T01:CDS |
| ATTAGACTCTGAAAGCTGTT+TGG | 0.461146 | 2:+30093653 | None:intergenic |
| CAGCCAGAGCACATGTTTCT+CGG | 0.463872 | 2:-30093465 | MsG0280008369.01.T01:CDS |
| GATGGAAGATATGTTATCTC+TGG | 0.468775 | 2:+30093539 | None:intergenic |
| CACTTGATCTTGCACAAGAT+GGG | 0.471002 | 2:-30094160 | MsG0280008369.01.T01:CDS |
| AGCAACGCGCTTCTGTTGTC+CGG | 0.486636 | 2:-30093377 | MsG0280008369.01.T01:CDS |
| ACTGGTTCACATTCTGGCCC+TGG | 0.489193 | 2:-30093618 | MsG0280008369.01.T01:CDS |
| CCCTGGCAACAATTATCAAA+AGG | 0.497774 | 2:-30093601 | MsG0280008369.01.T01:CDS |
| TCTCGGAAACTCTCCAAACA+TGG | 0.515279 | 2:-30093448 | MsG0280008369.01.T01:CDS |
| TTTCCGAGAAACATGTGCTC+TGG | 0.517885 | 2:+30093462 | None:intergenic |
| GGATGATTCAAAGAGAGAAA+AGG | 0.526180 | 2:+30094597 | None:intergenic |
| AAAGGAAGATCCTTCAGAGA+TGG | 0.545453 | 2:-30093583 | MsG0280008369.01.T01:CDS |
| CAAATGTTGCCTCAAATGAT+GGG | 0.554653 | 2:-30094209 | MsG0280008369.01.T01:CDS |
| TCTAATGCAGAATTTGTCAC+TGG | 0.556177 | 2:-30093636 | MsG0280008369.01.T01:CDS |
| AGTTGATCATAATCACTCAA+TGG | 0.558578 | 2:-30094550 | MsG0280008369.01.T01:intron |
| TGATGACTTTCCATCTCTGA+AGG | 0.561649 | 2:+30093573 | None:intergenic |
| CCGATCGGAACAACTTGTGA+TGG | 0.564255 | 2:+30093521 | None:intergenic |
| GATGCTAATCCCATCATTTG+AGG | 0.565976 | 2:+30094200 | None:intergenic |
| CTCGGAAACTCTCCAAACAT+GGG | 0.568497 | 2:-30093447 | MsG0280008369.01.T01:CDS |
| AAGTGGTAATGCAACTCTAG+TGG | 0.571902 | 2:+30094178 | None:intergenic |
| AGTGGAGGACTCACATTTGG+CGG | 0.581240 | 2:-30093405 | MsG0280008369.01.T01:CDS |
| GGAGGAGCACCACAATGCAG+TGG | 0.581886 | 2:-30093423 | MsG0280008369.01.T01:CDS |
| CCATCTTGTGCAAGATCAAG+TGG | 0.592935 | 2:+30094161 | None:intergenic |
| CCATCACAAGTTGTTCCGAT+CGG | 0.593385 | 2:-30093521 | MsG0280008369.01.T01:CDS |
| AATACCATGGTATACTGAGA+AGG | 0.610675 | 2:-30094115 | MsG0280008369.01.T01:CDS |
| AACTTGTGAGCAATTGAACT+CGG | 0.618219 | 2:+30094569 | None:intergenic |
| GGAGCACCACAATGCAGTGG+AGG | 0.620324 | 2:-30093420 | MsG0280008369.01.T01:CDS |
| TCGGAAACTCTCCAAACATG+GGG | 0.623338 | 2:-30093446 | MsG0280008369.01.T01:CDS |
| GTCAATGCAAAACAATACCA+TGG | 0.632585 | 2:-30094128 | MsG0280008369.01.T01:CDS |
| GGAAACTCTCCAAACATGGG+GGG | 0.635172 | 2:-30093444 | MsG0280008369.01.T01:CDS |
| AATAGAGTTAGAGGATCTGG+TGG | 0.657703 | 2:-30093690 | MsG0280008369.01.T01:CDS |
| CGGAAACTCTCCAAACATGG+GGG | 0.673768 | 2:-30093445 | MsG0280008369.01.T01:CDS |
| GTCGCCTTCTCAGTATACCA+TGG | 0.679853 | 2:+30094111 | None:intergenic |
| GTGAGTCCTCCACTGCATTG+TGG | 0.681382 | 2:+30093414 | None:intergenic |
| AAAACACTTACAACAGCATG+CGG | 0.692250 | 2:+30094386 | None:intergenic |
| ACAATCACGAGCTAAGCTTG+AGG | 0.693616 | 2:-30094090 | MsG0280008369.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAACTATTCAATAAAAC+GGG | + | Chr2:30094211-30094230 | None:intergenic | 20.0% |
| !! | GAGTAAACTATTCAATAAAA+CGG | + | Chr2:30094212-30094231 | None:intergenic | 20.0% |
| ! | AAAAAGTAAAGTTCAAAGCA+TGG | + | Chr2:30093949-30093968 | None:intergenic | 25.0% |
| ! | CAAAATGTCATGTTATTACA+TGG | - | Chr2:30094155-30094174 | MsG0280008369.01.T01:CDS | 25.0% |
| ! | GTATGTAAAACTTCTGTATT+TGG | - | Chr2:30093449-30093468 | MsG0280008369.01.T01:CDS | 25.0% |
| !! | CTACTAGTTTATATGCTATA+AGG | + | Chr2:30093982-30094001 | None:intergenic | 25.0% |
| !! | GATTTTATATAACCATCCAA+GGG | - | Chr2:30094075-30094094 | MsG0280008369.01.T01:CDS | 25.0% |
| !! | TGATTTTATATAACCATCCA+AGG | - | Chr2:30094074-30094093 | MsG0280008369.01.T01:CDS | 25.0% |
| !!! | GAACTTTACTTTTTTCATTC+AGG | - | Chr2:30093955-30093974 | MsG0280008369.01.T01:intron | 25.0% |
| !!! | GGTGAAATTGTTATTTGAAA+GGG | - | Chr2:30094176-30094195 | MsG0280008369.01.T01:CDS | 25.0% |
| !!! | TGGTGAAATTGTTATTTGAA+AGG | - | Chr2:30094175-30094194 | MsG0280008369.01.T01:CDS | 25.0% |
| !!! | TGTTTTGCATTGACATAAAT+GGG | + | Chr2:30093843-30093862 | None:intergenic | 25.0% |
| !!! | TTGTTTTGCATTGACATAAA+TGG | + | Chr2:30093844-30093863 | None:intergenic | 25.0% |
| AGTTGATCATAATCACTCAA+TGG | - | Chr2:30093427-30093446 | MsG0280008369.01.T01:CDS | 30.0% | |
| TAGCATATAAACTAGTAGCA+AGG | - | Chr2:30093984-30094003 | MsG0280008369.01.T01:intron | 30.0% | |
| TTTCTCGTTACAATCTCAAA+AGG | + | Chr2:30094050-30094069 | None:intergenic | 30.0% | |
| !!! | TATGTTATCTCTGGTTTTTG+AGG | + | Chr2:30094432-30094451 | None:intergenic | 30.0% |
| AAAACACTTACAACAGCATG+CGG | + | Chr2:30093594-30093613 | None:intergenic | 35.0% | |
| AACTTGTGAGCAATTGAACT+CGG | + | Chr2:30093411-30093430 | None:intergenic | 35.0% | |
| AATACCATGGTATACTGAGA+AGG | - | Chr2:30093862-30093881 | MsG0280008369.01.T01:intron | 35.0% | |
| AATTCTACCACTTGTCATCA+CGG | + | Chr2:30094116-30094135 | None:intergenic | 35.0% | |
| ACTAATGAACCAGCGAAAAT+TGG | + | Chr2:30093561-30093580 | None:intergenic | 35.0% | |
| CAAATGTTGCCTCAAATGAT+GGG | - | Chr2:30093768-30093787 | MsG0280008369.01.T01:intron | 35.0% | |
| CTCTATTCAAAGCATGTTTG+TGG | + | Chr2:30094274-30094293 | None:intergenic | 35.0% | |
| GATGGAAGATATGTTATCTC+TGG | + | Chr2:30094441-30094460 | None:intergenic | 35.0% | |
| GCGAAAATTGGATCACTATA+AGG | + | Chr2:30093549-30093568 | None:intergenic | 35.0% | |
| GGATGATTCAAAGAGAGAAA+AGG | + | Chr2:30093383-30093402 | None:intergenic | 35.0% | |
| GTCAATGCAAAACAATACCA+TGG | - | Chr2:30093849-30093868 | MsG0280008369.01.T01:intron | 35.0% | |
| TCAAATGTTGCCTCAAATGA+TGG | - | Chr2:30093767-30093786 | MsG0280008369.01.T01:intron | 35.0% | |
| TCTAATGCAGAATTTGTCAC+TGG | - | Chr2:30094341-30094360 | MsG0280008369.01.T01:intron | 35.0% | |
| TTGAATAGAGTTAGAGGATC+TGG | - | Chr2:30094284-30094303 | MsG0280008369.01.T01:intron | 35.0% | |
| ! | ATCATTTGAGGCAACATTTG+AGG | + | Chr2:30093768-30093787 | None:intergenic | 35.0% |
| ! | ATCTCAAAAGGTAAGAGTGT+AGG | + | Chr2:30094038-30094057 | None:intergenic | 35.0% |
| ! | ATTAGACTCTGAAAGCTGTT+TGG | + | Chr2:30094327-30094346 | None:intergenic | 35.0% |
| ! | CATGCTTTGAATAGAGTTAG+AGG | - | Chr2:30094278-30094297 | MsG0280008369.01.T01:intron | 35.0% |
| ! | TATAGTGATCCAATTTTCGC+TGG | - | Chr2:30093549-30093568 | MsG0280008369.01.T01:CDS | 35.0% |
| !! | CCTTTTGATAATTGTTGCCA+GGG | + | Chr2:30094379-30094398 | None:intergenic | 35.0% |
| !! | TCCTTTTGATAATTGTTGCC+AGG | + | Chr2:30094380-30094399 | None:intergenic | 35.0% |
| AAAGGAAGATCCTTCAGAGA+TGG | - | Chr2:30094394-30094413 | MsG0280008369.01.T01:intron | 40.0% | |
| AATAGAGTTAGAGGATCTGG+TGG | - | Chr2:30094287-30094306 | MsG0280008369.01.T01:intron | 40.0% | |
| ATTCTACCACTTGTCATCAC+GGG | + | Chr2:30094115-30094134 | None:intergenic | 40.0% | |
| CACTTGATCTTGCACAAGAT+GGG | - | Chr2:30093817-30093836 | MsG0280008369.01.T01:intron | 40.0% | |
| CCCTGGCAACAATTATCAAA+AGG | - | Chr2:30094376-30094395 | MsG0280008369.01.T01:intron | 40.0% | |
| CCTAAAACTGAAACTGTTGC+TGG | + | Chr2:30094492-30094511 | None:intergenic | 40.0% | |
| GATGCTAATCCCATCATTTG+AGG | + | Chr2:30093780-30093799 | None:intergenic | 40.0% | |
| TGATGACTTTCCATCTCTGA+AGG | + | Chr2:30094407-30094426 | None:intergenic | 40.0% | |
| ! | AAGTGGTAATGCAACTCTAG+TGG | + | Chr2:30093802-30093821 | None:intergenic | 40.0% |
| ! | AGTTATTGTCGTCCGTTTTC+AGG | - | Chr2:30093503-30093522 | MsG0280008369.01.T01:CDS | 40.0% |
| ! | CCAGCAACAGTTTCAGTTTT+AGG | - | Chr2:30094489-30094508 | MsG0280008369.01.T01:intron | 40.0% |
| !! | GCTGTTTGGTGCTTAGAAAT+CGG | + | Chr2:30094313-30094332 | None:intergenic | 40.0% |
| !! | TTTGTCACTGGTTCACATTC+TGG | - | Chr2:30094353-30094372 | MsG0280008369.01.T01:intron | 40.0% |
| ACAATCACGAGCTAAGCTTG+AGG | - | Chr2:30093887-30093906 | MsG0280008369.01.T01:intron | 45.0% | |
| CATGAGTCTGAGCCTGAAAA+CGG | + | Chr2:30093518-30093537 | None:intergenic | 45.0% | |
| CCACTTGATCTTGCACAAGA+TGG | - | Chr2:30093816-30093835 | MsG0280008369.01.T01:intron | 45.0% | |
| CCATCACAAGTTGTTCCGAT+CGG | - | Chr2:30094456-30094475 | MsG0280008369.01.T01:intron | 45.0% | |
| CCATCTTGTGCAAGATCAAG+TGG | + | Chr2:30093819-30093838 | None:intergenic | 45.0% | |
| CTCGGAAACTCTCCAAACAT+GGG | - | Chr2:30094530-30094549 | MsG0280008369.01.T01:intron | 45.0% | |
| GAGCAATTGAACTCGGTATC+AGG | + | Chr2:30093404-30093423 | None:intergenic | 45.0% | |
| GCTGGAAAAACATGTCCGAT+CGG | + | Chr2:30094474-30094493 | None:intergenic | 45.0% | |
| TAACCATCCAAGGGTGAACA+AGG | - | Chr2:30094084-30094103 | MsG0280008369.01.T01:CDS | 45.0% | |
| TCGGAAACTCTCCAAACATG+GGG | - | Chr2:30094531-30094550 | MsG0280008369.01.T01:intron | 45.0% | |
| TCTCGGAAACTCTCCAAACA+TGG | - | Chr2:30094529-30094548 | MsG0280008369.01.T01:intron | 45.0% | |
| TGGCGAGATTCGTGAAGATA+TGG | + | Chr2:30094254-30094273 | None:intergenic | 45.0% | |
| TTTCCGAGAAACATGTGCTC+TGG | + | Chr2:30094518-30094537 | None:intergenic | 45.0% | |
| ! | GTAGCAAGGTTTTTCATGCG+TGG | - | Chr2:30093998-30094017 | MsG0280008369.01.T01:intron | 45.0% |
| AGTGGAGGACTCACATTTGG+CGG | - | Chr2:30094572-30094591 | MsG0280008369.01.T01:CDS | 50.0% | |
| CAGCCAGAGCACATGTTTCT+CGG | - | Chr2:30094512-30094531 | MsG0280008369.01.T01:intron | 50.0% | |
| CCGATCGGAACAACTTGTGA+TGG | + | Chr2:30094459-30094478 | None:intergenic | 50.0% | |
| CGGAAACTCTCCAAACATGG+GGG | - | Chr2:30094532-30094551 | MsG0280008369.01.T01:intron | 50.0% | |
| GAACCTTGTTCACCCTTGGA+TGG | + | Chr2:30094090-30094109 | None:intergenic | 50.0% | |
| GGAAACTCTCCAAACATGGG+GGG | - | Chr2:30094533-30094552 | MsG0280008369.01.T01:intron | 50.0% | |
| GTCGCCTTCTCAGTATACCA+TGG | + | Chr2:30093869-30093888 | None:intergenic | 50.0% | |
| TGCAGTGGAGGACTCACATT+TGG | - | Chr2:30094569-30094588 | MsG0280008369.01.T01:CDS | 50.0% | |
| AACTCTCCAAACATGGGGGG+AGG | - | Chr2:30094536-30094555 | MsG0280008369.01.T01:intron | 55.0% | |
| AGCAACGCGCTTCTGTTGTC+CGG | - | Chr2:30094600-30094619 | MsG0280008369.01.T01:CDS | 55.0% | |
| CTACCACTTGTCATCACGGG+AGG | + | Chr2:30094112-30094131 | None:intergenic | 55.0% | |
| GGAGGAACCTTGTTCACCCT+TGG | + | Chr2:30094094-30094113 | None:intergenic | 55.0% | |
| GTGAGTCCTCCACTGCATTG+TGG | + | Chr2:30094566-30094585 | None:intergenic | 55.0% | |
| GTTCCTCCCGTGATGACAAG+TGG | - | Chr2:30094106-30094125 | MsG0280008369.01.T01:CDS | 55.0% | |
| ! | ACTGGTTCACATTCTGGCCC+TGG | - | Chr2:30094359-30094378 | MsG0280008369.01.T01:intron | 55.0% |
| ! | GGAGCACCACAATGCAGTGG+AGG | - | Chr2:30094557-30094576 | MsG0280008369.01.T01:CDS | 60.0% |
| !! | GGAGGAGCACCACAATGCAG+TGG | - | Chr2:30094554-30094573 | MsG0280008369.01.T01:CDS | 60.0% |
| GGTGCTCCTCCCCCCATGTT+TGG | + | Chr2:30094545-30094564 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 30093374 | 30094625 | 30093374 | ID=MsG0280008369.01;Name=MsG0280008369.01 |
| Chr2 | mRNA | 30093374 | 30094625 | 30093374 | ID=MsG0280008369.01.T01;Parent=MsG0280008369.01;Name=MsG0280008369.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|4|0|235 |
| Chr2 | exon | 30094551 | 30094625 | 30094551 | ID=MsG0280008369.01.T01:exon:5656;Parent=MsG0280008369.01.T01 |
| Chr2 | exon | 30094397 | 30094474 | 30094397 | ID=MsG0280008369.01.T01:exon:5655;Parent=MsG0280008369.01.T01 |
| Chr2 | exon | 30094061 | 30094240 | 30094061 | ID=MsG0280008369.01.T01:exon:5654;Parent=MsG0280008369.01.T01 |
| Chr2 | exon | 30093374 | 30093748 | 30093374 | ID=MsG0280008369.01.T01:exon:5653;Parent=MsG0280008369.01.T01 |
| Chr2 | CDS | 30094551 | 30094625 | 30094551 | ID=MsG0280008369.01.T01:cds;Parent=MsG0280008369.01.T01 |
| Chr2 | CDS | 30094397 | 30094474 | 30094397 | ID=MsG0280008369.01.T01:cds;Parent=MsG0280008369.01.T01 |
| Chr2 | CDS | 30094061 | 30094240 | 30094061 | ID=MsG0280008369.01.T01:cds;Parent=MsG0280008369.01.T01 |
| Chr2 | CDS | 30093374 | 30093748 | 30093374 | ID=MsG0280008369.01.T01:cds;Parent=MsG0280008369.01.T01 |
| Gene Sequence |
| Protein sequence |
