AlfalfaGEDB | MsG0280008719.01

M. sativa cultivar ZhongmuNo.1 / MsG0280008719.01

KEGG: K10950
GO: GO:0003756 GO:0005783 GO:0016671 GO:0055114
PFAM: PF04137

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008719.01.T01	XP_003595530.1	93.952	463	8	2	1	446	1	460	0	893

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008719.01.T01	Q9C7S7	67.857	448	121	5	17	444	18	462	0	619

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008719.01.T01	G7IGL6	93.952	463	8	2	1	446	1	460	0.0	893

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280008719.01	MsG0880045148.01	0.818565	1.834265e-52	1.377808e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280008719.01.T01	MTR_2g048900	93.952	463	8	2	1	446	1	460	0.0	893

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0280008719.01.T01	AT1G72280	67.857	448	121	5	17	444	18	462	619
MsG0280008719.01.T01	AT2G38960	68.989	445	110	6	6	429	9	446	617
MsG0280008719.01.T01	AT2G38960	68.989	445	110	6	6	429	9	446	616
MsG0280008719.01.T01	AT2G38960	68.222	450	110	6	6	429	9	451	614

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Find 116 sgRNAs with CRISPR-Local

Find 527 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATGTCAGTGTGCTA+TGG	0.634623	2:+37254739	MsG0280008719.01.T01:CDS
AAAAGGTTCTTAACTTTCGG+TGG	0.540277	2:-37262645	None:intergenic
AAAATTTCAAACCATGATCA+TGG	0.431751	2:-37259993	None:intergenic
AAACAAGATCATTCAACGAA+AGG	0.602651	2:-37256774	None:intergenic
AACATCAATTCAGAAATATC+AGG	0.405915	2:+37258294	MsG0280008719.01.T01:CDS
AACCGGCACATGCCATCATC+AGG	0.413941	2:-37256685	None:intergenic
AACTGTGGACAATCTTAATG+AGG	0.590432	2:+37255752	MsG0280008719.01.T01:CDS
AAGATTCTCTTCTCTGATGA+TGG	0.454831	2:+37258805	MsG0280008719.01.T01:CDS
AAGCAGTTGGTGTGACAGTT+GGG	0.436716	2:+37259933	MsG0280008719.01.T01:CDS
AAGCTCCAGGTTCTTGGTCT+TGG	0.347274	2:+37258772	MsG0280008719.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGATCATTCAACGAA+AGG	-	Chr2:37256777-37256796	None:intergenic	30.0%
AAACTAAGAAGAACCATATG+GGG	-	Chr2:37261059-37261078	None:intergenic	30.0%
AACAACAGTGTTATCAATTG+TGG	-	Chr2:37255604-37255623	None:intergenic	30.0%
AACACAAAAACATGTATGCA+TGG	-	Chr2:37254804-37254823	None:intergenic	30.0%
AAGAGAAATGAGAAGAAAAG+TGG	-	Chr2:37261266-37261285	None:intergenic	30.0%
AAGCATCAACAATATCAAAG+AGG	-	Chr2:37255885-37255904	None:intergenic	30.0%
AAGCTTTACTATCCAAAGTA+CGG	-	Chr2:37256831-37256850	None:intergenic	30.0%
AATCAGTAATACAACAAAGC+AGG	-	Chr2:37258645-37258664	None:intergenic	30.0%
AATTTCATATGTCTGGAAGA+AGG	-	Chr2:37258994-37259013	None:intergenic	30.0%
ACCTTAAAATACCGAAAGAA+CGG	-	Chr2:37255816-37255835	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	37254355	37262701	37254355	ID=MsG0280008719.01;Name=MsG0280008719.01
Chr2	mRNA	37254355	37262701	37254355	ID=MsG0280008719.01.T01;Parent=MsG0280008719.01;Name=MsG0280008719.01.T01;_AED=0.40;_eAED=0.40;_QI=241\|0.6\|0.63\|1\|0.8\|0.81\|11\|0\|516
Chr2	exon	37254355	37254760	37254355	ID=MsG0280008719.01.T01:exon:6343;Parent=MsG0280008719.01.T01
Chr2	exon	37255702	37255833	37255702	ID=MsG0280008719.01.T01:exon:6344;Parent=MsG0280008719.01.T01
Chr2	exon	37256655	37256907	37256655	ID=MsG0280008719.01.T01:exon:6345;Parent=MsG0280008719.01.T01
Chr2	exon	37257150	37257260	37257150	ID=MsG0280008719.01.T01:exon:6346;Parent=MsG0280008719.01.T01
Chr2	exon	37257485	37257603	37257485	ID=MsG0280008719.01.T01:exon:6347;Parent=MsG0280008719.01.T01
Chr2	exon	37257904	37258017	37257904	ID=MsG0280008719.01.T01:exon:6348;Parent=MsG0280008719.01.T01
Chr2	exon	37258113	37258315	37258113	ID=MsG0280008719.01.T01:exon:6349;Parent=MsG0280008719.01.T01
Chr2	exon	37258726	37258848	37258726	ID=MsG0280008719.01.T01:exon:6350;Parent=MsG0280008719.01.T01
Chr2	exon	37259702	37259817	37259702	ID=MsG0280008719.01.T01:exon:6351;Parent=MsG0280008719.01.T01
Chr2	exon	37259932	37260029	37259932	ID=MsG0280008719.01.T01:exon:6352;Parent=MsG0280008719.01.T01
Chr2	exon	37262585	37262701	37262585	ID=MsG0280008719.01.T01:exon:6353;Parent=MsG0280008719.01.T01
Chr2	five_prime_UTR	37254355	37254595	37254355	ID=MsG0280008719.01.T01:five_prime_utr;Parent=MsG0280008719.01.T01
Chr2	CDS	37254596	37254760	37254596	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37255702	37255833	37255702	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37256655	37256907	37256655	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37257150	37257260	37257150	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37257485	37257603	37257485	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37257904	37258017	37257904	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37258113	37258315	37258113	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37258726	37258848	37258726	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37259702	37259817	37259702	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37259932	37260029	37259932	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01
Chr2	CDS	37262585	37262701	37262585	ID=MsG0280008719.01.T01:cds;Parent=MsG0280008719.01.T01

Gene Sequence

>MsG0280008719.01.T01

ATGGTGAATTCAGAGTTGAAGAAGAAAAATAAGGGTTTTGGAGGGAAATGGGTTTGGGTTGTTATTCCTCTTATTGCTGCCATTGTTGCAATTTCCATTTCTTCAAGAACTTCTTCAAAAATTTCTCTTTTTGGTGTCATTGGAAAAGCATGTCAGTGTGCTATGGGTACACCGAAGTATAGTGGTATGGTGGAGGATTGTTGTTGTGATTATGAAACTGTGGACAATCTTAATGAGGAAGTGTTGTACCCATCTCTCCAAGAGCTCGTGAAAACCCCGTTCTTTCGGTATTTTAAGGCTAAGCTATGGTGTGACTGTCCTTTTTGGCCTGATGATGGCATGTGCCGGTTGCGGGACTGCAGTGTATGTGAATGCCCAGAAAATGAGTTCCCAGAGTCATTTAAGAAGCCTAAGCGCCTTTCGTTGAATGATCTTGTTTGTCAAGAAGGAAAACCTGAGGCAGCTGTTGACCGTACTTTGGATAGTAAAGCTTTCACAGGATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACAGACAATGATGAGTTGACATATGTGAACCTTCAACTGAATCCTGAAAGATATACTGGTTACACCGGTACATCTGCAAGAAGGATATGGGATGCTGTCTACTCTGAGAACTGCCCCAAATATCTTTCGCAGGAATCATGCCAAGAGGAAAAGATTTTGTATAAATTGATATCAGGTCTTCACTCCTCCATATCTGTACATATAGCTTCTGATTACCTACTTGACGAAGCTACCAATACGTGGGGCCAAAATCTTACATTGTTGTATGACCGAGTCCTTCAATACCCCGATCGTGTCAGAAATTTGTATTTCACTTTTCTCTTTGTCCTGCGAGCAGTAACCAAAGTGAGTATGGCTGCAGATTATCTCGAGCAGGCTGAGTACAACACGGGTAACCCTAATGAGGACCTTAAAACAGAATCCTTGATAAAACAGCTACTTTACAAACCCAAGCTTCAAGCTGCATGTCCAGTTCCATTTGATGAAGCTAAGTTGTGGAAAGGACAAAGTGGACCTGAGCTAAAACAAAAAATTCAACATCAATTCAGAAATATCAGTGCGTTGATGGATTGTGTAGGATGTGAGAAGTGTCGACTATGGGGAAAGCTCCAGGTTCTTGGTCTTGGAACTGCATTAAAGATTCTCTTCTCTGATGATGGTCCAGAAACATGGTTCAAACAACTGTCAGAATCTGTCAAATTCGTTCATGAAATGGGACCTACTGCCGAAAGAATCACTGAAGGACATCTTTTTGGCCATACAAAGCTTATTGGCTCCTTGAGAAAAATATGGTCCCGAAGCAGTTGGTGTGACAGTTGGGTTTTCACTTACATTACTACAAAGATTAGGCTCAGAAACCATGATCATGGTTTGAAATTTTCCAAGGATGTGAAACTAGAAATCAATGTTCACAGAGTGGAAGGTAGTAGGGATCTAATTTGGAAAATCCAAGCTCCACCGAAAGTTAAGAACCTTTTATGGAGAACTTGTCGAAACTTCAACAAGAGTTAG

Protein sequence

>MsG0280008719.01.T01

MVNSELKKKNKGFGGKWVWVVIPLIAAIVAISISSRTSSKISLFGVIGKACQCAMGTPKYSGMVEDCCCDYETVDNLNEEVLYPSLQELVKTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPESFKKPKRLSLNDLVCQEGKPEAAVDRTLDSKAFTGWTEIDNPWTNDDETDNDELTYVNLQLNPERYTGYTGTSARRIWDAVYSENCPKYLSQESCQEEKILYKLISGLHSSISVHIASDYLLDEATNTWGQNLTLLYDRVLQYPDRVRNLYFTFLFVLRAVTKVSMAADYLEQAEYNTGNPNEDLKTESLIKQLLYKPKLQAACPVPFDEAKLWKGQSGPELKQKIQHQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSDDGPETWFKQLSESVKFVHEMGPTAERITEGHLFGHTKLIGSLRKIWSRSSWCDSWVFTYITTKIRLRNHDHGLKFSKDVKLEINVHRVEGSRDLIWKIQAPPKVKNLLWRTCRNFNKS*