AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008736.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008736.01.T01 MTR_2g049300 94.970 338 17 0 1 338 1 338 0.0 644
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008736.01.T01 AT1G65030 63.343 341 111 6 7 333 1 341 4.50e-150 426

Find 111 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGTTAGGGTTTGGGAATT+AGG 0.178314 2:-37472259 None:intergenic
GAAAAGAGGGGTTAGGGTTT+GGG 0.244603 2:-37472266 None:intergenic
AGAAAAGAGGGGTTAGGGTT+TGG 0.250963 2:-37472267 None:intergenic
GGGTTAGGGTTTGGGAATTA+GGG 0.267977 2:-37472258 None:intergenic
GAGGTTAGGTGGGGAGTAAA+AGG 0.307128 2:-37472446 None:intergenic
GCTCATGCTGCCCGTGTAAA+AGG 0.308669 2:+37474481 MsG0280008736.01.T01:CDS
TGATCTTGCTATTCATCCTT+CGG 0.349769 2:+37472579 MsG0280008736.01.T01:CDS
GATCTTGCTATTCATCCTTC+GGG 0.350182 2:+37472580 MsG0280008736.01.T01:CDS
TCAAGGTTGACATGCCTTGC+TGG 0.365058 2:+37474649 MsG0280008736.01.T01:CDS
GAGGGAACCGAGGGAGGAGG+AGG 0.382811 2:-37472392 None:intergenic
GGAACCGAGGGAGGAGGAGG+CGG 0.386061 2:-37472389 None:intergenic
CGGTGGAGGAGTGGTGGTTG+AGG 0.386759 2:-37472411 None:intergenic
AGATTGCGTTGACTGTTTCC+AGG 0.389155 2:+37472605 MsG0280008736.01.T01:CDS
TCAATGACTTCCCCATCTAA+TGG 0.393773 2:-37475495 None:intergenic
GAGGAAAAGGGAGGTTAGGT+GGG 0.394400 2:-37472456 None:intergenic
GTTCATACGAACGTTTCATC+TGG 0.399920 2:+37472221 MsG0280008736.01.T01:CDS
GAGATGGGTAGGAGAAAAGA+GGG 0.404768 2:-37472279 None:intergenic
GAGACGAGGTTACGAGGAAA+AGG 0.408415 2:-37472469 None:intergenic
GGTAGGAGAAAAGAGGGGTT+AGG 0.409991 2:-37472273 None:intergenic
CTGATGGGAGTATACGTGTA+TGG 0.422857 2:+37474569 MsG0280008736.01.T01:CDS
ACGCTTTCTGTTCATAAGAA+AGG 0.436563 2:+37472550 MsG0280008736.01.T01:CDS
GTAGGAGAAAAGAGGGGTTA+GGG 0.439159 2:-37472272 None:intergenic
TTGATTAGGGAGAGATGAGA+TGG 0.439330 2:-37472295 None:intergenic
CAGATGATGCAGATGCTACT+AGG 0.441503 2:-37474549 None:intergenic
CTCTCCGCCTCCTCCTCCCT+CGG 0.441939 2:+37472385 MsG0280008736.01.T01:CDS
GTTGAGGGAACCGAGGGAGG+AGG 0.443302 2:-37472395 None:intergenic
AGGCGGAGAGGTTGTAGAGA+TGG 0.447658 2:-37472372 None:intergenic
GGAGAGGGCGGTGACGGTGG+AGG 0.448002 2:-37472425 None:intergenic
TGAGATTGTTAATGTTCATC+AGG 0.452416 2:+37472750 MsG0280008736.01.T01:CDS
TCCAACTCCGTCGTAGCATC+CGG 0.471871 2:+37472331 MsG0280008736.01.T01:CDS
CAGAATGGACTCCTCTATAC+AGG 0.475279 2:+37474391 MsG0280008736.01.T01:intron
TCTGCATTATTGTTTCCAGC+AGG 0.475460 2:-37475207 None:intergenic
TGAGATGGGTAGGAGAAAAG+AGG 0.477219 2:-37472280 None:intergenic
CTGCATTATTGTTTCCAGCA+GGG 0.477930 2:-37475206 None:intergenic
TTCATACGAACGTTTCATCT+GGG 0.479601 2:+37472222 MsG0280008736.01.T01:CDS
TTACGAGGAAAAGGGAGGTT+AGG 0.488111 2:-37472460 None:intergenic
TGATTAGGGAGAGATGAGAT+GGG 0.488752 2:-37472294 None:intergenic
TAGGGAGAGATGAGATGGGT+AGG 0.490422 2:-37472290 None:intergenic
GATCCTCACCGCCTGTATAG+AGG 0.491284 2:-37474402 None:intergenic
TCTTTGCGCCGCACCTGCTA+AGG 0.492670 2:+37472819 MsG0280008736.01.T01:CDS
ATTGTGAGGTTTGATGAGTC+TGG 0.501240 2:+37472703 MsG0280008736.01.T01:CDS
GATTGTGTCGTCGGAGCCGC+CGG 0.505004 2:-37472350 None:intergenic
CGAGGAAAAGGGAGGTTAGG+TGG 0.505307 2:-37472457 None:intergenic
GGGCGGTGACGGTGGAGGAG+TGG 0.509611 2:-37472420 None:intergenic
TGCATTATTGTTTCCAGCAG+GGG 0.516968 2:-37475205 None:intergenic
GATGCAGATGCTACTAGGTA+TGG 0.519794 2:-37474544 None:intergenic
GTAAAAGGAGAGGGCGGTGA+CGG 0.526436 2:-37472431 None:intergenic
ATGCTAGCAATTCTATGTGA+TGG 0.528293 2:+37475353 MsG0280008736.01.T01:three_prime_UTR
TGCTACGACGGAGTTGGAAA+CGG 0.531881 2:-37472326 None:intergenic
AGAAGAATAAGTCTAGTAGC+AGG 0.533234 2:+37472199 MsG0280008736.01.T01:CDS
AAAGGAGAGGGCGGTGACGG+TGG 0.536855 2:-37472428 None:intergenic
CTATGGTGAATCTTGTTCGT+GGG 0.538294 2:+37472641 MsG0280008736.01.T01:CDS
CGGTGACGGTGGAGGAGTGG+TGG 0.539307 2:-37472417 None:intergenic
GCCGGATGCTACGACGGAGT+TGG 0.539917 2:-37472332 None:intergenic
CGAGGGAGGAGGAGGCGGAG+AGG 0.541004 2:-37472384 None:intergenic
TGAGGATGCTAGGTTGTTGA+TGG 0.542316 2:+37472774 MsG0280008736.01.T01:CDS
GCATTATTGTTTCCAGCAGG+GGG 0.546341 2:-37475204 None:intergenic
CATAGCAAAACAACAATCCC+TGG 0.549366 2:-37472623 None:intergenic
GCGGCGCAAAGAACACGTTT+CGG 0.550695 2:-37472808 None:intergenic
GGTGGAGGAGTGGTGGTTGA+GGG 0.551062 2:-37472410 None:intergenic
GTAGAGATGGATTGTGTCGT+CGG 0.552251 2:-37472359 None:intergenic
GATTGCGTTGACTGTTTCCA+GGG 0.552606 2:+37472606 MsG0280008736.01.T01:CDS
TTCATCAGGCTGAGGATGCT+AGG 0.555360 2:+37472764 MsG0280008736.01.T01:CDS
AGCTGCATATTGCATAGAAG+AGG 0.556429 2:+37474459 MsG0280008736.01.T01:CDS
AAGGGAGCCGTCAGCGTCAG+CGG 0.562811 2:-37472491 None:intergenic
GTAGCATCTGCATCATCTGA+TGG 0.562837 2:+37474553 MsG0280008736.01.T01:CDS
GCTATGGTGAATCTTGTTCG+TGG 0.565161 2:+37472640 MsG0280008736.01.T01:CDS
CTAGAAAGTTGAAACAAGAG+AGG 0.566880 2:+37475403 MsG0280008736.01.T01:three_prime_UTR
TGTGTCTTACACTCAGCTAG+TGG 0.567537 2:-37474625 None:intergenic
TGTTAATGTTCATCAGGCTG+AGG 0.567574 2:+37472756 MsG0280008736.01.T01:CDS
TAGCATCTGCATCATCTGAT+GGG 0.576284 2:+37474554 MsG0280008736.01.T01:CDS
CTCGTCTCCGCTGACGCTGA+CGG 0.579738 2:+37472484 MsG0280008736.01.T01:CDS
GTGGTGGTTGAGGGAACCGA+GGG 0.580263 2:-37472401 None:intergenic
GTGGTTGAGGGAACCGAGGG+AGG 0.580308 2:-37472398 None:intergenic
GAGTGAAGTTCAAAGAGAAG+AGG 0.584910 2:+37472142 MsG0280008736.01.T01:five_prime_UTR
ACGTGTATGGGATGTTCGAA+TGG 0.587534 2:+37474582 MsG0280008736.01.T01:CDS
AGACGAGGTTACGAGGAAAA+GGG 0.587722 2:-37472468 None:intergenic
GACGGAGTTGGAAACGGCGA+CGG 0.590300 2:-37472320 None:intergenic
CGTCGGCATCGAAAATCGCA+AGG 0.593605 2:-37472510 None:intergenic
AACACAAACCTTAGCAGGTG+CGG 0.595333 2:-37472827 None:intergenic
GTGCTCAGTGATGAGGCTAC+AGG 0.597789 2:+37474511 MsG0280008736.01.T01:CDS
AGGAAAAGGGAGGTTAGGTG+GGG 0.602689 2:-37472455 None:intergenic
CGTCAGCGTCAGCGGAGACG+AGG 0.606149 2:-37472483 None:intergenic
AGGTGGGGAGTAAAAGGAGA+GGG 0.606990 2:-37472440 None:intergenic
TCATACGAACGTTTCATCTG+GGG 0.608441 2:+37472223 MsG0280008736.01.T01:CDS
AACTCCGTCGTAGCATCCGG+CGG 0.608827 2:+37472334 MsG0280008736.01.T01:CDS
TAGAAAGTTGAAACAAGAGA+GGG 0.611402 2:+37475404 MsG0280008736.01.T01:three_prime_UTR
TGGTGAATCTTGTTCGTGGG+AGG 0.618920 2:+37472644 MsG0280008736.01.T01:CDS
ATAAGGAAGCGTCGATTGTG+AGG 0.619446 2:+37472689 MsG0280008736.01.T01:CDS
TGGGGAGTAAAAGGAGAGGG+CGG 0.621028 2:-37472437 None:intergenic
GGATCGAAATATCACAGCAT+GGG 0.621813 2:+37474420 MsG0280008736.01.T01:CDS
AGTGGTGGTTGAGGGAACCG+AGG 0.622207 2:-37472402 None:intergenic
CACATAGAATTGCTAGCATG+AGG 0.625101 2:-37475349 None:intergenic
ACAGCATGGGACTTAAAGAG+TGG 0.625874 2:+37474433 MsG0280008736.01.T01:CDS
AGGATCGAAATATCACAGCA+TGG 0.626271 2:+37474419 MsG0280008736.01.T01:CDS
TGATGGGAGTATACGTGTAT+GGG 0.626292 2:+37474570 MsG0280008736.01.T01:CDS
TAGGTGGGGAGTAAAAGGAG+AGG 0.630023 2:-37472441 None:intergenic
GGAGCCGCCGGATGCTACGA+CGG 0.632498 2:-37472338 None:intergenic
ATTTCAGACACGATCCAGCA+AGG 0.634495 2:-37474663 None:intergenic
ATCTTGCTATTCATCCTTCG+GGG 0.658103 2:+37472581 MsG0280008736.01.T01:CDS
GTCAACGCAATCTTCCCCGA+AGG 0.662687 2:-37472595 None:intergenic
TATTGTTGTGCTCAGTGATG+AGG 0.664398 2:+37474504 MsG0280008736.01.T01:CDS
AGATGGGTAGGAGAAAAGAG+GGG 0.671108 2:-37472278 None:intergenic
GTCGGCATCGAAAATCGCAA+GGG 0.674840 2:-37472509 None:intergenic
CGAGGTTACGAGGAAAAGGG+AGG 0.678360 2:-37472465 None:intergenic
TCAGCGGAGACGAGGTTACG+AGG 0.684369 2:-37472475 None:intergenic
TGAGGTGCACAGATTTGTGA+AGG 0.690046 2:-37475331 None:intergenic
AATGGACTCCTCTATACAGG+CGG 0.691777 2:+37474394 MsG0280008736.01.T01:CDS
CTGAGTGTAAGACACAGTCA+AGG 0.696685 2:+37474632 MsG0280008736.01.T01:CDS
CTTAAGATGAACGAAACCGT+CGG 0.699863 2:-37472527 None:intergenic
ACTCCTCTATACAGGCGGTG+AGG 0.731025 2:+37474399 MsG0280008736.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATATAAATATAATAAG+TGG - Chr2:37473440-37473459 None:intergenic 10.0%
!! TCAAATAAAATATTATAAAG+GGG - Chr2:37474013-37474032 None:intergenic 10.0%
!!! AATAGTTTTTTTTTTTTTGA+TGG + Chr2:37475262-37475281 MsG0280008736.01.T01:exon 10.0%
!!! ATAGTTTTTTTTTTTTTGAT+GGG + Chr2:37475263-37475282 MsG0280008736.01.T01:exon 10.0%
!! AATTGAGAAATTTCATAATT+AGG + Chr2:37473412-37473431 MsG0280008736.01.T01:intron 15.0%
!! ATTGAGAAATTTCATAATTA+GGG + Chr2:37473413-37473432 MsG0280008736.01.T01:intron 15.0%
!! CTAAAATTGAAATATTTCAA+GGG - Chr2:37474943-37474962 None:intergenic 15.0%
!! TAATTTAAGGACTAAATTAA+AGG - Chr2:37472932-37472951 None:intergenic 15.0%
!!! ATAACTTATTTTTATGAGAA+CGG - Chr2:37473191-37473210 None:intergenic 15.0%
!!! ATTGTTTTAATTCATTTTAG+AGG + Chr2:37472878-37472897 MsG0280008736.01.T01:intron 15.0%
!!! TCTAAAATTGAAATATTTCA+AGG - Chr2:37474944-37474963 None:intergenic 15.0%
!! AGTTGAAGATAAAAATCAAA+TGG + Chr2:37475230-37475249 MsG0280008736.01.T01:CDS 20.0%
!! ATGACTAAAAAAGAATCATT+TGG - Chr2:37473237-37473256 None:intergenic 20.0%
!! CCTTGATATTAAAATATTAG+AGG + Chr2:37473354-37473373 MsG0280008736.01.T01:intron 20.0%
!! CTGCAACATAAAATAAATTA+GGG - Chr2:37474374-37474393 None:intergenic 20.0%
!! TATTCAATGAATGTGTTTAA+AGG + Chr2:37474316-37474335 MsG0280008736.01.T01:intron 20.0%
!! TCTGCAACATAAAATAAATT+AGG - Chr2:37474375-37474394 None:intergenic 20.0%
!! TTAAAAGAAATCTAAGCAAA+AGG + Chr2:37474893-37474912 MsG0280008736.01.T01:intron 20.0%
!!! ATAATCAGGGTTTTATAAAA+AGG - Chr2:37473760-37473779 None:intergenic 20.0%
!!! ATAATTTACTAGCAAGTTTT+AGG + Chr2:37473523-37473542 MsG0280008736.01.T01:intron 20.0%
!!! ATGAAATTTTTCCATTAGAT+GGG + Chr2:37475484-37475503 MsG0280008736.01.T01:three_prime_UTR 20.0%
!!! ATTTATTTTATGTTGCAGAA+TGG + Chr2:37474376-37474395 MsG0280008736.01.T01:intron 20.0%
!!! ATTTTTCAATTAAGATTGCA+AGG + Chr2:37473108-37473127 MsG0280008736.01.T01:intron 20.0%
!!! CCTCTAATATTTTAATATCA+AGG - Chr2:37473357-37473376 None:intergenic 20.0%
!!! TATGAAATTTTTCCATTAGA+TGG + Chr2:37475483-37475502 MsG0280008736.01.T01:three_prime_UTR 20.0%
!!! TGATATTTTGTGTTCTTTAA+AGG + Chr2:37475515-37475534 MsG0280008736.01.T01:three_prime_UTR 20.0%
!!! TTGTTTTTCTAAACTATTTG+TGG + Chr2:37474130-37474149 MsG0280008736.01.T01:intron 20.0%
! AATAGAAGTTAAATATAGCC+TGG + Chr2:37474978-37474997 MsG0280008736.01.T01:intron 25.0%
! AATATCAAGGACTTAATTGT+CGG - Chr2:37473344-37473363 None:intergenic 25.0%
! AATATCATAGTGAGACTTAA+GGG + Chr2:37474835-37474854 MsG0280008736.01.T01:intron 25.0%
! AATATTAGAGGCTAAATTGA+CGG + Chr2:37473366-37473385 MsG0280008736.01.T01:intron 25.0%
! ACTTTATATTCGTTAAAGAG+TGG + Chr2:37474086-37474105 MsG0280008736.01.T01:intron 25.0%
! CTCTGTTTGGTAAAAAATAA+TGG + Chr2:37472963-37472982 MsG0280008736.01.T01:intron 25.0%
! GTCCTTAAATTATGCAAATA+AGG + Chr2:37472940-37472959 MsG0280008736.01.T01:intron 25.0%
! TAACTTCTATTTCAGATTGA+AGG - Chr2:37474969-37474988 None:intergenic 25.0%
! TATAAAACCCTGATTATGAT+AGG + Chr2:37473763-37473782 MsG0280008736.01.T01:intron 25.0%
! TATGAACTAAATTAGAGAGA+TGG + Chr2:37473460-37473479 MsG0280008736.01.T01:intron 25.0%
! TATTAAAATCCAAACACTTC+TGG - Chr2:37473875-37473894 None:intergenic 25.0%
!! TCGTACATGATAAAACATTT+TGG - Chr2:37475012-37475031 None:intergenic 25.0%
!! TCTTTTTCCTATCATAATCA+GGG - Chr2:37473773-37473792 None:intergenic 25.0%
!! TGAAATTTTTCCATTAGATG+GGG + Chr2:37475485-37475504 MsG0280008736.01.T01:three_prime_UTR 25.0%
!! TTCTTTTTCCTATCATAATC+AGG - Chr2:37473774-37473793 None:intergenic 25.0%
!!! AGCCTTATTTGCATAATTTA+AGG - Chr2:37472945-37472964 None:intergenic 25.0%
!!! ATTTTAAAAACTAACCATGC+AGG - Chr2:37474751-37474770 None:intergenic 25.0%
!!! GACGGATTTTTATATACTTT+AGG + Chr2:37473384-37473403 MsG0280008736.01.T01:intron 25.0%
!!! GTTTGGATTTTAATAGAATC+TGG + Chr2:37473880-37473899 MsG0280008736.01.T01:intron 25.0%
!!! TGATGAGTTTTTTGTAACTA+AGG + Chr2:37473625-37473644 MsG0280008736.01.T01:intron 25.0%
AAAGAGTGGAAAAGTTTCAT+TGG + Chr2:37474100-37474119 MsG0280008736.01.T01:intron 30.0%
ACGAATATAAAGTCATGCAA+TGG - Chr2:37474079-37474098 None:intergenic 30.0%
AGTCTCACTATGATATTCAA+AGG - Chr2:37474832-37474851 None:intergenic 30.0%
ATAAAAACACAAACCTTAGC+AGG - Chr2:37472835-37472854 None:intergenic 30.0%
ATATCAAGGACTTAATTGTC+GGG - Chr2:37473343-37473362 None:intergenic 30.0%
ATTCCTAAAAGCTAATCAGT+AGG - Chr2:37475076-37475095 None:intergenic 30.0%
GAATATCATAGTGAGACTTA+AGG + Chr2:37474834-37474853 MsG0280008736.01.T01:intron 30.0%
TAACTGATGAAACTCAATTG+CGG + Chr2:37473704-37473723 MsG0280008736.01.T01:intron 30.0%
TAGAAAGTTGAAACAAGAGA+GGG + Chr2:37475404-37475423 MsG0280008736.01.T01:three_prime_UTR 30.0%
TCTATAGCAATCTTCATAAG+TGG + Chr2:37475100-37475119 MsG0280008736.01.T01:intron 30.0%
TGAGATTGTTAATGTTCATC+AGG + Chr2:37472750-37472769 MsG0280008736.01.T01:CDS 30.0%
TTAAGATTGCAAGGATACAA+TGG + Chr2:37473117-37473136 MsG0280008736.01.T01:intron 30.0%
TTCCTAAAAGCTAATCAGTA+GGG - Chr2:37475075-37475094 None:intergenic 30.0%
TTTGCCACAAGAAAACAATA+TGG - Chr2:37473804-37473823 None:intergenic 30.0%
! AAAGCCATATTGTTTTCTTG+TGG + Chr2:37473797-37473816 MsG0280008736.01.T01:intron 30.0%
! AAAGGAAACACTCTTTAGAA+TGG + Chr2:37474911-37474930 MsG0280008736.01.T01:intron 30.0%
! AAATATCTGATGCTGGTTAA+TGG + Chr2:37474155-37474174 MsG0280008736.01.T01:intron 30.0%
! AATATCTGATGCTGGTTAAT+GGG + Chr2:37474156-37474175 MsG0280008736.01.T01:intron 30.0%
! ATATTGTTTTCTTGTGGCAA+AGG + Chr2:37473803-37473822 MsG0280008736.01.T01:intron 30.0%
! ATTGATACTTTGAAGAGACA+TGG + Chr2:37473674-37473693 MsG0280008736.01.T01:intron 30.0%
! CTTCAAAGTATCAATGATCA+TGG - Chr2:37473669-37473688 None:intergenic 30.0%
!! ATATATCAACCAGAAGTGTT+TGG + Chr2:37473863-37473882 MsG0280008736.01.T01:intron 30.0%
!! ATATTCAAAGGCACTCATTA+AGG - Chr2:37474820-37474839 None:intergenic 30.0%
!! CTTTTGTTGTAGATTGGATA+AGG + Chr2:37472672-37472691 MsG0280008736.01.T01:CDS 30.0%
!! GAATCTGGAATTTGTTAACT+AGG + Chr2:37473895-37473914 MsG0280008736.01.T01:intron 30.0%
!! GTCGGGTTTTATATAAGTAA+AGG - Chr2:37473326-37473345 None:intergenic 30.0%
AACTGATGAAACTCAATTGC+GGG + Chr2:37473705-37473724 MsG0280008736.01.T01:intron 35.0%
ACGCTTTCTGTTCATAAGAA+AGG + Chr2:37472550-37472569 MsG0280008736.01.T01:CDS 35.0%
AGAAGAATAAGTCTAGTAGC+AGG + Chr2:37472199-37472218 MsG0280008736.01.T01:CDS 35.0%
AGAGAGATGGTGAATAGTTT+AGG + Chr2:37473473-37473492 MsG0280008736.01.T01:intron 35.0%
AGTAAAGGACTACTTCTGTT+TGG - Chr2:37473311-37473330 None:intergenic 35.0%
AGTTCAAGCAATATGAGCTA+AGG - Chr2:37474718-37474737 None:intergenic 35.0%
ATGCTAGCAATTCTATGTGA+TGG + Chr2:37475353-37475372 MsG0280008736.01.T01:three_prime_UTR 35.0%
CTAGAAAGTTGAAACAAGAG+AGG + Chr2:37475403-37475422 MsG0280008736.01.T01:three_prime_UTR 35.0%
CTGATTGAATTCGTAGTGTT+CGG + Chr2:37473015-37473034 MsG0280008736.01.T01:intron 35.0%
GAGAGATGGTGAATAGTTTA+GGG + Chr2:37473474-37473493 MsG0280008736.01.T01:intron 35.0%
GTTATAAGCTCATGAGAAAG+TGG + Chr2:37473206-37473225 MsG0280008736.01.T01:intron 35.0%
TAGTTTAGGGACGAAATTGA+TGG + Chr2:37473487-37473506 MsG0280008736.01.T01:intron 35.0%
TATGCAAATAAGGCTCTGTT+TGG + Chr2:37472950-37472969 MsG0280008736.01.T01:intron 35.0%
TTCATACGAACGTTTCATCT+GGG + Chr2:37472222-37472241 MsG0280008736.01.T01:CDS 35.0%
TTGCACATAATAACCATCTG+CGG - Chr2:37474254-37474273 None:intergenic 35.0%
! ATATCTGATGCTGGTTAATG+GGG + Chr2:37474157-37474176 MsG0280008736.01.T01:intron 35.0%
! ATTTGTTAACTAGGCTTTGC+TGG + Chr2:37473904-37473923 MsG0280008736.01.T01:intron 35.0%
! CACAACAATACCTTTTACAC+GGG - Chr2:37474494-37474513 None:intergenic 35.0%
! GCACAACAATACCTTTTACA+CGG - Chr2:37474495-37474514 None:intergenic 35.0%
! TGTTCTGAATCTTCTGATAC+TGG - Chr2:37473933-37473952 None:intergenic 35.0%
!! AACATGGTTTTACTAGTCCT+TGG + Chr2:37474191-37474210 MsG0280008736.01.T01:intron 35.0%
!! GAGAAGCTTTTGTTGTAGAT+TGG + Chr2:37472666-37472685 MsG0280008736.01.T01:CDS 35.0%
!! TGATCTTGCTATTCATCCTT+CGG + Chr2:37472579-37472598 MsG0280008736.01.T01:CDS 35.0%
!! TTTGGTTTGTGTAGGAGTTT+AGG + Chr2:37475041-37475060 MsG0280008736.01.T01:intron 35.0%
!!! AACATTTTGGCTTGTTTACC+AGG - Chr2:37474999-37475018 None:intergenic 35.0%
!!! GTCTGGTGATTCGTTTTTTA+TGG + Chr2:37472720-37472739 MsG0280008736.01.T01:CDS 35.0%
AAAAGGTTCACACCACAATG+TGG - Chr2:37473743-37473762 None:intergenic 40.0%
AACTTTCATGGTCCACATTG+TGG + Chr2:37473728-37473747 MsG0280008736.01.T01:intron 40.0%
ACTAACCATGCAGGCAAAAA+AGG - Chr2:37474742-37474761 None:intergenic 40.0%
AGCTGCATATTGCATAGAAG+AGG + Chr2:37474459-37474478 MsG0280008736.01.T01:CDS 40.0%
AGGACTACTTCTGTTTGGTA+AGG - Chr2:37473306-37473325 None:intergenic 40.0%
AGGATCGAAATATCACAGCA+TGG + Chr2:37474419-37474438 MsG0280008736.01.T01:CDS 40.0%
ATCATAGTGAGACTTAAGGG+CGG + Chr2:37474838-37474857 MsG0280008736.01.T01:intron 40.0%
ATTGTGAGGTTTGATGAGTC+TGG + Chr2:37472703-37472722 MsG0280008736.01.T01:CDS 40.0%
CAACATTGTTCCTCTCATTG+CGG - Chr2:37474042-37474061 None:intergenic 40.0%
CACATAGAATTGCTAGCATG+AGG - Chr2:37475352-37475371 None:intergenic 40.0%
CATAGCAAAACAACAATCCC+TGG - Chr2:37472626-37472645 None:intergenic 40.0%
CTATGGTGAATCTTGTTCGT+GGG + Chr2:37472641-37472660 MsG0280008736.01.T01:CDS 40.0%
CTGCATTATTGTTTCCAGCA+GGG - Chr2:37475209-37475228 None:intergenic 40.0%
CTTAAGATGAACGAAACCGT+CGG - Chr2:37472530-37472549 None:intergenic 40.0%
GAGTGAAGTTCAAAGAGAAG+AGG + Chr2:37472142-37472161 MsG0280008736.01.T01:five_prime_UTR 40.0%
GGATCGAAATATCACAGCAT+GGG + Chr2:37474420-37474439 MsG0280008736.01.T01:CDS 40.0%
GTTCATACGAACGTTTCATC+TGG + Chr2:37472221-37472240 MsG0280008736.01.T01:CDS 40.0%
TAGCATCTGCATCATCTGAT+GGG + Chr2:37474554-37474573 MsG0280008736.01.T01:CDS 40.0%
TAGTCCTTGGCAAGTTTCAT+TGG + Chr2:37474204-37474223 MsG0280008736.01.T01:intron 40.0%
TATTGTTGTGCTCAGTGATG+AGG + Chr2:37474504-37474523 MsG0280008736.01.T01:CDS 40.0%
TCAATGACTTCCCCATCTAA+TGG - Chr2:37475498-37475517 None:intergenic 40.0%
TCATACGAACGTTTCATCTG+GGG + Chr2:37472223-37472242 MsG0280008736.01.T01:CDS 40.0%
TCTGCATTATTGTTTCCAGC+AGG - Chr2:37475210-37475229 None:intergenic 40.0%
TGATTAGGGAGAGATGAGAT+GGG - Chr2:37472297-37472316 None:intergenic 40.0%
TGCATTATTGTTTCCAGCAG+GGG - Chr2:37475208-37475227 None:intergenic 40.0%
TGTGCTTGTAGTATGCATGT+TGG + Chr2:37475126-37475145 MsG0280008736.01.T01:intron 40.0%
TGTGGTGAAATATCTGATGC+TGG + Chr2:37474148-37474167 MsG0280008736.01.T01:intron 40.0%
TGTTAATGTTCATCAGGCTG+AGG + Chr2:37472756-37472775 MsG0280008736.01.T01:CDS 40.0%
TTCACCAATGAAACTTGCCA+AGG - Chr2:37474211-37474230 None:intergenic 40.0%
TTGATTAGGGAGAGATGAGA+TGG - Chr2:37472298-37472317 None:intergenic 40.0%
! TGATGGGAGTATACGTGTAT+GGG + Chr2:37474570-37474589 MsG0280008736.01.T01:CDS 40.0%
!! ATCTTGCTATTCATCCTTCG+GGG + Chr2:37472581-37472600 MsG0280008736.01.T01:CDS 40.0%
!! GATCTTGCTATTCATCCTTC+GGG + Chr2:37472580-37472599 MsG0280008736.01.T01:CDS 40.0%
!! GTGATGTTCAGCTTGCTAAT+AGG + Chr2:37473588-37473607 MsG0280008736.01.T01:intron 40.0%
!!! CAGGGATTGTTGTTTTGCTA+TGG + Chr2:37472624-37472643 MsG0280008736.01.T01:CDS 40.0%
!!! CGTTTTGCTGTTCGATTAAG+TGG + Chr2:37475300-37475319 MsG0280008736.01.T01:three_prime_UTR 40.0%
!!! CTCCCTACTGATTAGCTTTT+AGG + Chr2:37475070-37475089 MsG0280008736.01.T01:intron 40.0%
!!! TAGTGGTTTTGACTTCTCTG+TGG - Chr2:37474611-37474630 None:intergenic 40.0%
AACACAAACCTTAGCAGGTG+CGG - Chr2:37472830-37472849 None:intergenic 45.0%
ACAGCATGGGACTTAAAGAG+TGG + Chr2:37474433-37474452 MsG0280008736.01.T01:CDS 45.0%
ACGTGTATGGGATGTTCGAA+TGG + Chr2:37474582-37474601 MsG0280008736.01.T01:CDS 45.0%
AGAAAAGAGGGGTTAGGGTT+TGG - Chr2:37472270-37472289 None:intergenic 45.0%
AGACGAGGTTACGAGGAAAA+GGG - Chr2:37472471-37472490 None:intergenic 45.0%
AGATGGGTAGGAGAAAAGAG+GGG - Chr2:37472281-37472300 None:intergenic 45.0%
ATTTCAGACACGATCCAGCA+AGG - Chr2:37474666-37474685 None:intergenic 45.0%
CAGATGATGCAGATGCTACT+AGG - Chr2:37474552-37474571 None:intergenic 45.0%
CATGTACGAAACACGTGCTT+TGG + Chr2:37475023-37475042 MsG0280008736.01.T01:intron 45.0%
CTCAATTGCGGGAACTTTCA+TGG + Chr2:37473716-37473735 MsG0280008736.01.T01:intron 45.0%
CTGAGTGTAAGACACAGTCA+AGG + Chr2:37474632-37474651 MsG0280008736.01.T01:CDS 45.0%
GAAAAGAGGGGTTAGGGTTT+GGG - Chr2:37472269-37472288 None:intergenic 45.0%
GAGATGGGTAGGAGAAAAGA+GGG - Chr2:37472282-37472301 None:intergenic 45.0%
GATGCAGATGCTACTAGGTA+TGG - Chr2:37474547-37474566 None:intergenic 45.0%
GCATTATTGTTTCCAGCAGG+GGG - Chr2:37475207-37475226 None:intergenic 45.0%
GCTATGGTGAATCTTGTTCG+TGG + Chr2:37472640-37472659 MsG0280008736.01.T01:CDS 45.0%
GGGTTAGGGTTTGGGAATTA+GGG - Chr2:37472261-37472280 None:intergenic 45.0%
GTAGCATCTGCATCATCTGA+TGG + Chr2:37474553-37474572 MsG0280008736.01.T01:CDS 45.0%
GTAGGAGAAAAGAGGGGTTA+GGG - Chr2:37472275-37472294 None:intergenic 45.0%
TGAGATGGGTAGGAGAAAAG+AGG - Chr2:37472283-37472302 None:intergenic 45.0%
TGAGGATGCTAGGTTGTTGA+TGG + Chr2:37472774-37472793 MsG0280008736.01.T01:CDS 45.0%
TGAGGTGCACAGATTTGTGA+AGG - Chr2:37475334-37475353 None:intergenic 45.0%
TGTGTCTTACACTCAGCTAG+TGG - Chr2:37474628-37474647 None:intergenic 45.0%
TTACGAGGAAAAGGGAGGTT+AGG - Chr2:37472463-37472482 None:intergenic 45.0%
! AATGGACTCCTCTATACAGG+CGG + Chr2:37474394-37474413 MsG0280008736.01.T01:CDS 45.0%
! CAGAATGGACTCCTCTATAC+AGG + Chr2:37474391-37474410 MsG0280008736.01.T01:intron 45.0%
! CTGATGGGAGTATACGTGTA+TGG + Chr2:37474569-37474588 MsG0280008736.01.T01:CDS 45.0%
!! ACACGTGCTTTGGTTTGTGT+AGG + Chr2:37475033-37475052 MsG0280008736.01.T01:intron 45.0%
!! AGATTGCGTTGACTGTTTCC+AGG + Chr2:37472605-37472624 MsG0280008736.01.T01:CDS 45.0%
!! ATAAGGAAGCGTCGATTGTG+AGG + Chr2:37472689-37472708 MsG0280008736.01.T01:CDS 45.0%
!! GATTGCGTTGACTGTTTCCA+GGG + Chr2:37472606-37472625 MsG0280008736.01.T01:CDS 45.0%
!! GTAGAGATGGATTGTGTCGT+CGG - Chr2:37472362-37472381 None:intergenic 45.0%
!!! AAACGGCGACGGTTTTGATT+AGG - Chr2:37472312-37472331 None:intergenic 45.0%
!!! AACGGCGACGGTTTTGATTA+GGG - Chr2:37472311-37472330 None:intergenic 45.0%
!!! AACTGCCTTTTTTGCCTGCA+TGG + Chr2:37474734-37474753 MsG0280008736.01.T01:intron 45.0%
!!! TGGTTTTGACTTCTCTGTGG+CGG - Chr2:37474608-37474627 None:intergenic 45.0%
!! AATCAAATAAAATATTATAA+AGG - Chr2:37474015-37474034 None:intergenic 5.0%
!! ATCAAATAAAATATTATAAA+GGG - Chr2:37474014-37474033 None:intergenic 5.0%
AGGAAAAGGGAGGTTAGGTG+GGG - Chr2:37472458-37472477 None:intergenic 50.0%
AGGTGGGGAGTAAAAGGAGA+GGG - Chr2:37472443-37472462 None:intergenic 50.0%
CATTGTTCCTCTCATTGCGG+TGG - Chr2:37474039-37474058 None:intergenic 50.0%
GAGACGAGGTTACGAGGAAA+AGG - Chr2:37472472-37472491 None:intergenic 50.0%
GAGGAAAAGGGAGGTTAGGT+GGG - Chr2:37472459-37472478 None:intergenic 50.0%
GAGGTTAGGTGGGGAGTAAA+AGG - Chr2:37472449-37472468 None:intergenic 50.0%
GGGGTTAGGGTTTGGGAATT+AGG - Chr2:37472262-37472281 None:intergenic 50.0%
GGTAGGAGAAAAGAGGGGTT+AGG - Chr2:37472276-37472295 None:intergenic 50.0%
TAGGGAGAGATGAGATGGGT+AGG - Chr2:37472293-37472312 None:intergenic 50.0%
TAGGTGGGGAGTAAAAGGAG+AGG - Chr2:37472444-37472463 None:intergenic 50.0%
TCAAGGTTGACATGCCTTGC+TGG + Chr2:37474649-37474668 MsG0280008736.01.T01:CDS 50.0%
TGCTACGACGGAGTTGGAAA+CGG - Chr2:37472329-37472348 None:intergenic 50.0%
TGGGGCTGATAGGCATAACA+TGG + Chr2:37474175-37474194 MsG0280008736.01.T01:intron 50.0%
TGGTGAATCTTGTTCGTGGG+AGG + Chr2:37472644-37472663 MsG0280008736.01.T01:CDS 50.0%
TTCATCAGGCTGAGGATGCT+AGG + Chr2:37472764-37472783 MsG0280008736.01.T01:CDS 50.0%
TTGATTGCCACCGCAATGAG+AGG + Chr2:37474029-37474048 MsG0280008736.01.T01:intron 50.0%
! CTTGCGATTTTCGATGCCGA+CGG + Chr2:37472511-37472530 MsG0280008736.01.T01:CDS 50.0%
! GTCGGCATCGAAAATCGCAA+GGG - Chr2:37472512-37472531 None:intergenic 50.0%
! TGCTGGTTAATGGGGCTGAT+AGG + Chr2:37474165-37474184 MsG0280008736.01.T01:intron 50.0%
ACTCCTCTATACAGGCGGTG+AGG + Chr2:37474399-37474418 MsG0280008736.01.T01:CDS 55.0%
AGGCGGAGAGGTTGTAGAGA+TGG - Chr2:37472375-37472394 None:intergenic 55.0%
ATATGCTGCACAGCCGCAGA+TGG + Chr2:37474238-37474257 MsG0280008736.01.T01:intron 55.0%
CGAGGAAAAGGGAGGTTAGG+TGG - Chr2:37472460-37472479 None:intergenic 55.0%
CGAGGTTACGAGGAAAAGGG+AGG - Chr2:37472468-37472487 None:intergenic 55.0%
GATCCTCACCGCCTGTATAG+AGG - Chr2:37474405-37474424 None:intergenic 55.0%
GCGGCGCAAAGAACACGTTT+CGG - Chr2:37472811-37472830 None:intergenic 55.0%
GCTCATGCTGCCCGTGTAAA+AGG + Chr2:37474481-37474500 MsG0280008736.01.T01:CDS 55.0%
GGGGTTGTTTGGCTGCACAA+CGG - Chr2:37475188-37475207 None:intergenic 55.0%
GTAAAAGGAGAGGGCGGTGA+CGG - Chr2:37472434-37472453 None:intergenic 55.0%
GTCAACGCAATCTTCCCCGA+AGG - Chr2:37472598-37472617 None:intergenic 55.0%
GTGCTCAGTGATGAGGCTAC+AGG + Chr2:37474511-37474530 MsG0280008736.01.T01:CDS 55.0%
GTTTCCAGCAGGGGGTTGTT+TGG - Chr2:37475199-37475218 None:intergenic 55.0%
TCCAACTCCGTCGTAGCATC+CGG + Chr2:37472331-37472350 MsG0280008736.01.T01:CDS 55.0%
TGGGGAGTAAAAGGAGAGGG+CGG - Chr2:37472440-37472459 None:intergenic 55.0%
! CGTCGGCATCGAAAATCGCA+AGG - Chr2:37472513-37472532 None:intergenic 55.0%
AACTCCGTCGTAGCATCCGG+CGG + Chr2:37472334-37472353 MsG0280008736.01.T01:CDS 60.0%
AGTGGTGGTTGAGGGAACCG+AGG - Chr2:37472405-37472424 None:intergenic 60.0%
GACGGAGTTGGAAACGGCGA+CGG - Chr2:37472323-37472342 None:intergenic 60.0%
GGTGGAGGAGTGGTGGTTGA+GGG - Chr2:37472413-37472432 None:intergenic 60.0%
GTGGTGGTTGAGGGAACCGA+GGG - Chr2:37472404-37472423 None:intergenic 60.0%
TCAGCGGAGACGAGGTTACG+AGG - Chr2:37472478-37472497 None:intergenic 60.0%
TCTTTGCGCCGCACCTGCTA+AGG + Chr2:37472819-37472838 MsG0280008736.01.T01:CDS 60.0%
AAGGGAGCCGTCAGCGTCAG+CGG - Chr2:37472494-37472513 None:intergenic 65.0%
CGGTGGAGGAGTGGTGGTTG+AGG - Chr2:37472414-37472433 None:intergenic 65.0%
CTCGTCTCCGCTGACGCTGA+CGG + Chr2:37472484-37472503 MsG0280008736.01.T01:CDS 65.0%
GATTGTGTCGTCGGAGCCGC+CGG - Chr2:37472353-37472372 None:intergenic 65.0%
GCAGCCAAACAACCCCCTGC+TGG + Chr2:37475192-37475211 MsG0280008736.01.T01:intron 65.0%
GCCGGATGCTACGACGGAGT+TGG - Chr2:37472335-37472354 None:intergenic 65.0%
GTGGTTGAGGGAACCGAGGG+AGG - Chr2:37472401-37472420 None:intergenic 65.0%
GTTGAGGGAACCGAGGGAGG+AGG - Chr2:37472398-37472417 None:intergenic 65.0%
! AAAGGAGAGGGCGGTGACGG+TGG - Chr2:37472431-37472450 None:intergenic 65.0%
CGTCAGCGTCAGCGGAGACG+AGG - Chr2:37472486-37472505 None:intergenic 70.0%
CTCTCCGCCTCCTCCTCCCT+CGG + Chr2:37472385-37472404 MsG0280008736.01.T01:CDS 70.0%
GAGGGAACCGAGGGAGGAGG+AGG - Chr2:37472395-37472414 None:intergenic 70.0%
GGAACCGAGGGAGGAGGAGG+CGG - Chr2:37472392-37472411 None:intergenic 70.0%
GGAGCCGCCGGATGCTACGA+CGG - Chr2:37472341-37472360 None:intergenic 70.0%
! CGGTGACGGTGGAGGAGTGG+TGG - Chr2:37472420-37472439 None:intergenic 70.0%
CGAGGGAGGAGGAGGCGGAG+AGG - Chr2:37472387-37472406 None:intergenic 75.0%
! GGAGAGGGCGGTGACGGTGG+AGG - Chr2:37472428-37472447 None:intergenic 75.0%
! GGGCGGTGACGGTGGAGGAG+TGG - Chr2:37472423-37472442 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 37472114 37475534 37472114 ID=MsG0280008736.01;Name=MsG0280008736.01
Chr2 mRNA 37472114 37475534 37472114 ID=MsG0280008736.01.T01;Parent=MsG0280008736.01;Name=MsG0280008736.01.T01;_AED=0.41;_eAED=0.41;_QI=73|1|1|1|1|1|3|268|338
Chr2 exon 37472114 37472840 37472114 ID=MsG0280008736.01.T01:exon:62009;Parent=MsG0280008736.01.T01
Chr2 exon 37474394 37474685 37474394 ID=MsG0280008736.01.T01:exon:62010;Parent=MsG0280008736.01.T01
Chr2 exon 37475196 37475534 37475196 ID=MsG0280008736.01.T01:exon:62011;Parent=MsG0280008736.01.T01
Chr2 five_prime_UTR 37472114 37472186 37472114 ID=MsG0280008736.01.T01:five_prime_utr;Parent=MsG0280008736.01.T01
Chr2 CDS 37472187 37472840 37472187 ID=MsG0280008736.01.T01:cds;Parent=MsG0280008736.01.T01
Chr2 CDS 37474394 37474685 37474394 ID=MsG0280008736.01.T01:cds;Parent=MsG0280008736.01.T01
Chr2 CDS 37475196 37475266 37475196 ID=MsG0280008736.01.T01:cds;Parent=MsG0280008736.01.T01
Chr2 three_prime_UTR 37475267 37475534 37475267 ID=MsG0280008736.01.T01:three_prime_utr;Parent=MsG0280008736.01.T01
Gene Sequence

>MsG0280008736.01.T01

ATGAGTTCAAAGAGAAGAATAAGTCTAGTAGCAGGTTCATACGAACGTTTCATCTGGGGTTTCAATCTCAACCCTAATTCCCAAACCCTAACCCCTCTTTTCTCCTACCCATCTCATCTCTCCCTAATCAAAACCGTCGCCGTTTCCAACTCCGTCGTAGCATCCGGCGGCTCCGACGACACAATCCATCTCTACAACCTCTCCGCCTCCTCCTCCCTCGGTTCCCTCAACCACCACTCCTCCACCGTCACCGCCCTCTCCTTTTACTCCCCACCTAACCTCCCTTTTCCTCGTAACCTCGTCTCCGCTGACGCTGACGGCTCCCTTGCGATTTTCGATGCCGACGGTTTCGTTCATCTTAAGACGCTTTCTGTTCATAAGAAAGGTGTTAATGATCTTGCTATTCATCCTTCGGGGAAGATTGCGTTGACTGTTTCCAGGGATTGTTGTTTTGCTATGGTGAATCTTGTTCGTGGGAGGAGAAGCTTTTGTTGTAGATTGGATAAGGAAGCGTCGATTGTGAGGTTTGATGAGTCTGGTGATTCGTTTTTTATGGCTGTTGATGAGATTGTTAATGTTCATCAGGCTGAGGATGCTAGGTTGTTGATGGAATTGCAATGTCCGAAACGTGTTCTTTGCGCCGCACCTGCTAAGAATGGACTCCTCTATACAGGCGGTGAGGATCGAAATATCACAGCATGGGACTTAAAGAGTGGAAAAGCTGCATATTGCATAGAAGAGGCTCATGCTGCCCGTGTAAAAGGTATTGTTGTGCTCAGTGATGAGGCTACAGGAGATGATGAACCATACCTAGTAGCATCTGCATCATCTGATGGGAGTATACGTGTATGGGATGTTCGAATGGCCGCCACAGAGAAGTCAAAACCACTAGCTGAGTGTAAGACACAGTCAAGGTTGACATGCCTTGCTGGATCGTGTCTGAAATCCAAACAACCCCCTGCTGGAAACAATAATGCAGAAGTTGAAGATAAAAATCAAATGGTGACAGATCAATAG
Protein sequence

>MsG0280008736.01.T01

MSSKRRISLVAGSYERFIWGFNLNPNSQTLTPLFSYPSHLSLIKTVAVSNSVVASGGSDDTIHLYNLSASSSLGSLNHHSSTVTALSFYSPPNLPFPRNLVSADADGSLAIFDADGFVHLKTLSVHKKGVNDLAIHPSGKIALTVSRDCCFAMVNLVRGRRSFCCRLDKEASIVRFDESGDSFFMAVDEIVNVHQAEDARLLMELQCPKRVLCAAPAKNGLLYTGGEDRNITAWDLKSGKAAYCIEEAHAARVKGIVVLSDEATGDDEPYLVASASSDGSIRVWDVRMAATEKSKPLAECKTQSRLTCLAGSCLKSKQPPAGNNNAEVEDKNQMVTDQ*