AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008952.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008952.01.T01 MTR_0071s0100 98.750 80 1 0 54 133 217 296 6.59e-54 174
MsG0280008952.01.T01 MTR_6g059310 65.385 78 27 0 54 131 119 196 2.66e-31 114
MsG0280008952.01.T01 MTR_6g059310 65.385 78 27 0 54 131 119 196 2.98e-31 114
MsG0280008952.01.T01 MTR_3g088625 44.565 92 44 2 48 132 1212 1303 2.51e-19 83.2
MsG0280008952.01.T01 MTR_3g088625 44.565 92 44 2 48 132 1318 1409 2.52e-19 83.2
MsG0280008952.01.T01 MTR_1g098000 42.683 82 47 0 54 135 102 183 2.62e-16 74.3
MsG0280008952.01.T01 MTR_1g098370 42.683 82 47 0 54 135 105 186 2.62e-16 74.3
MsG0280008952.01.T01 MTR_2g036060 40.541 74 44 0 59 132 1044 1117 5.26e-15 70.9
MsG0280008952.01.T01 MTR_2g036060 40.541 74 44 0 59 132 1069 1142 5.27e-15 70.9
MsG0280008952.01.T01 MTR_5g018850 39.048 105 52 2 41 133 1345 1449 2.87e-14 68.9
MsG0280008952.01.T01 MTR_8g078490 38.095 105 53 2 41 133 1091 1195 1.04e-13 67.4
MsG0280008952.01.T01 MTR_1g008230 40.506 79 44 2 58 135 903 979 1.51e-13 66.6
MsG0280008952.01.T01 MTR_5g013420 39.423 104 33 4 54 131 923 1022 1.72e-13 66.6
MsG0280008952.01.T01 MTR_5g013420 39.423 104 33 4 54 131 923 1022 1.72e-13 66.6
MsG0280008952.01.T01 MTR_1g008230 40.506 79 44 2 58 135 625 701 2.15e-13 66.2
MsG0280008952.01.T01 MTR_8g027725 37.179 78 48 1 58 135 818 894 6.96e-13 64.7
MsG0280008952.01.T01 MTR_8g027725 37.179 78 48 1 58 135 803 879 7.01e-13 64.7
MsG0280008952.01.T01 MTR_4g010830 37.500 104 35 4 54 131 814 913 7.68e-13 64.7
MsG0280008952.01.T01 MTR_4g132610 36.893 103 53 2 41 131 885 987 7.95e-13 64.7
MsG0280008952.01.T01 MTR_7g117355 37.179 78 48 1 58 135 833 909 1.40e-12 63.9
MsG0280008952.01.T01 MTR_7g445600 42.391 92 37 4 46 136 248 324 2.06e-12 63.2
MsG0280008952.01.T01 MTR_3g091310 38.462 78 47 1 58 135 932 1008 3.70e-12 62.8
MsG0280008952.01.T01 MTR_3g091310 38.462 78 47 1 58 135 838 914 3.89e-12 62.8
MsG0280008952.01.T01 MTR_1g012910 37.037 81 43 2 58 132 537 615 6.62e-12 62.0
MsG0280008952.01.T01 MTR_7g088370 33.962 106 55 2 45 135 541 646 8.31e-12 61.6
MsG0280008952.01.T01 MTR_1g012910 37.037 81 43 2 58 132 374 452 8.80e-12 61.6
MsG0280008952.01.T01 MTR_7g450730 37.864 103 52 3 46 136 341 443 1.78e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008952.01.T01 AT4G30860 80.000 80 16 0 54 133 333 412 1.46e-45 154
MsG0280008952.01.T01 AT2G44150 66.667 78 26 0 54 131 123 200 2.53e-33 120
MsG0280008952.01.T01 AT3G59960 60.256 78 31 0 54 131 118 195 1.52e-29 108
MsG0280008952.01.T01 AT3G59960 60.256 78 31 0 54 131 118 195 1.52e-29 108
MsG0280008952.01.T01 AT3G59960 60.256 78 31 0 54 131 118 195 1.52e-29 108
MsG0280008952.01.T01 AT3G59960 60.256 78 31 0 54 131 118 195 4.28e-29 108
MsG0280008952.01.T01 AT1G77300 38.776 98 53 1 42 132 1014 1111 1.49e-18 81.3
MsG0280008952.01.T01 AT1G77300 38.776 98 53 1 42 132 1014 1111 1.51e-18 81.3
MsG0280008952.01.T01 AT1G76710 44.872 78 43 0 58 135 100 177 1.30e-16 75.5
MsG0280008952.01.T01 AT1G76710 44.872 78 43 0 58 135 100 177 1.30e-16 75.5
MsG0280008952.01.T01 AT1G76710 44.872 78 43 0 58 135 100 177 1.31e-16 75.5
MsG0280008952.01.T01 AT1G76710 44.872 78 43 0 58 135 100 177 1.32e-16 75.5
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT5G42400 40.541 74 44 0 59 132 1261 1334 1.11e-15 72.8
MsG0280008952.01.T01 AT4G27910 39.241 79 45 2 58 135 896 972 7.71e-14 67.8
MsG0280008952.01.T01 AT2G23740 37.168 113 55 3 35 133 1204 1314 1.58e-13 66.6
MsG0280008952.01.T01 AT2G23740 37.168 113 55 3 35 133 1211 1321 1.58e-13 66.6
MsG0280008952.01.T01 AT2G23740 37.168 113 55 3 35 133 1211 1321 1.58e-13 66.6
MsG0280008952.01.T01 AT2G23740 37.168 113 55 3 35 133 1211 1321 1.58e-13 66.6
MsG0280008952.01.T01 AT3G61740 39.744 78 46 1 58 135 850 926 5.52e-13 65.1
MsG0280008952.01.T01 AT3G61740 39.744 78 46 1 58 135 886 962 5.65e-13 65.1
MsG0280008952.01.T01 AT5G53430 38.462 78 47 1 58 135 912 988 6.48e-13 65.1
MsG0280008952.01.T01 AT2G35160 43.590 78 40 1 54 131 618 691 7.84e-13 64.7
MsG0280008952.01.T01 AT2G35160 43.590 78 40 1 54 131 654 727 7.89e-13 64.7
MsG0280008952.01.T01 AT2G35160 43.590 78 40 1 54 131 654 727 7.89e-13 64.7
MsG0280008952.01.T01 AT2G35160 43.590 78 40 1 54 131 654 727 7.89e-13 64.7
MsG0280008952.01.T01 AT2G35160 43.590 78 40 1 54 131 654 727 7.89e-13 64.7

Find 26 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTTATAATTGAGTATAT+TGG 0.295105 2:-42202708 MsG0280008952.01.T01:CDS
ACCACTTCTCCAAACACAAT+TGG 0.330296 2:+42202327 None:intergenic
CTTTATGTGAACAAAGGCTT+TGG 0.359165 2:-42202465 MsG0280008952.01.T01:CDS
GCTTTGGGACATGAAATATA+AGG 0.372894 2:-42202449 MsG0280008952.01.T01:CDS
CATGAAGGTCTACAGAGATA+TGG 0.409336 2:-42203769 MsG0280008952.01.T01:CDS
AGCCATTGACATACGATTAC+AGG 0.429757 2:-42201867 MsG0280008952.01.T01:three_prime_UTR
CCACTTCTCCAAACACAATT+GGG 0.436523 2:+42202328 None:intergenic
TTTATGTGAACAAAGGCTTT+GGG 0.456264 2:-42202464 MsG0280008952.01.T01:CDS
GCTGTGATCCCAATTGTGTT+TGG 0.464663 2:-42202336 MsG0280008952.01.T01:CDS
ACAATAGATGCAACTTTCAA+AGG 0.468582 2:-42202385 MsG0280008952.01.T01:CDS
CCCAATTGTGTTTGGAGAAG+TGG 0.468853 2:-42202328 MsG0280008952.01.T01:CDS
ACACGCATTGGTGTATTTGC+TGG 0.475579 2:-42201910 MsG0280008952.01.T01:three_prime_UTR
CTTTGGGACATGAAATATAA+GGG 0.484978 2:-42202448 MsG0280008952.01.T01:CDS
GCTGGTCGTTCAATAGAAGT+TGG 0.492356 2:-42201892 MsG0280008952.01.T01:three_prime_UTR
CTCTGTAGACCTTCATGTCT+AGG 0.503919 2:+42203775 None:intergenic
GCTGTTGAAACAATTGAGAA+AGG 0.536186 2:-42202732 MsG0280008952.01.T01:CDS
AGTGATGTCGATGATGATGT+TGG 0.536778 2:-42203994 None:intergenic
CACAATTGGGATCACAGCTA+TGG 0.540886 2:+42202341 None:intergenic
TACCTGTAATCGTATGTCAA+TGG 0.542756 2:+42201865 None:intergenic
ATAATTGAGTATATTGGAGA+AGG 0.543225 2:-42202702 MsG0280008952.01.T01:intron
GTGATGTCGATGATGATGTT+GGG 0.576236 2:-42203993 MsG0280008952.01.T01:CDS
GCTCTAATGATTGTGTATGC+AGG 0.602774 2:-42203948 MsG0280008952.01.T01:intron
AGAGCAAGTAGAACTGCAGT+TGG 0.609503 2:+42203966 None:intergenic
ATGATGCTTTATGTGAACAA+AGG 0.611648 2:-42202471 MsG0280008952.01.T01:CDS
AAGGTCTACAGAGATATGGA+TGG 0.627972 2:-42203765 MsG0280008952.01.T01:CDS
GTAGATGGTGAAACACGCAT+TGG 0.665236 2:-42201922 MsG0280008952.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAATATTTCATAAGT+TGG - Chr2:42202807-42202826 MsG0280008952.01.T01:intron 10.0%
!!! AATTTTTCTTAGTATAAAAA+TGG - Chr2:42203818-42203837 MsG0280008952.01.T01:intron 10.0%
!!! ATTTTAATATTTCATAAGTT+GGG - Chr2:42202808-42202827 MsG0280008952.01.T01:intron 10.0%
!!! TTTTAAGTATATATTTTTTG+GGG - Chr2:42203004-42203023 MsG0280008952.01.T01:intron 10.0%
!! ACATAATATTATTACTTATC+AGG - Chr2:42202847-42202866 MsG0280008952.01.T01:intron 15.0%
!! ATAGAATAATAGAATTAGTT+GGG - Chr2:42202213-42202232 MsG0280008952.01.T01:intron 15.0%
!! CATAATATTATTACTTATCA+GGG - Chr2:42202848-42202867 MsG0280008952.01.T01:intron 15.0%
!! TATAGAATAATAGAATTAGT+TGG - Chr2:42202212-42202231 MsG0280008952.01.T01:intron 15.0%
!!! AAAAATGTATAGTTTGATTT+TGG + Chr2:42203876-42203895 None:intergenic 15.0%
!! ATTTAAAAGGAAATAAAGAG+TGG + Chr2:42201943-42201962 None:intergenic 20.0%
!! GAGTTTATAATTGAGTATAT+TGG - Chr2:42203140-42203159 MsG0280008952.01.T01:intron 20.0%
!! TAGATTATAGTATGAAAGAA+GGG + Chr2:42203218-42203237 None:intergenic 20.0%
!! TTAGATTATAGTATGAAAGA+AGG + Chr2:42203219-42203238 None:intergenic 20.0%
!! TTTATAGGTGTAAATAATGT+AGG - Chr2:42201970-42201989 MsG0280008952.01.T01:intron 20.0%
!!! AAAAAATATCATTTTCTCGA+AGG + Chr2:42202523-42202542 None:intergenic 20.0%
!!! ATTTTTTCCTTGCAAATTTT+AGG + Chr2:42203687-42203706 None:intergenic 20.0%
!!! CAAAGTATTATTCATAAGTT+GGG - Chr2:42202769-42202788 MsG0280008952.01.T01:intron 20.0%
!!! CATTTTTGCTAAAACTATTA+TGG - Chr2:42203889-42203908 MsG0280008952.01.T01:intron 20.0%
!!! GACATATTTTATGTTTTCTA+CGG + Chr2:42202188-42202207 None:intergenic 20.0%
!!! TTCCAATTTTAGCAATAATT+TGG + Chr2:42203636-42203655 None:intergenic 20.0%
! AAGGAAATATAAGATGTGAT+TGG + Chr2:42202693-42202712 None:intergenic 25.0%
! AGATTATAGTATGAAAGAAG+GGG + Chr2:42203217-42203236 None:intergenic 25.0%
! ATAATTGAGTATATTGGAGA+AGG - Chr2:42203146-42203165 MsG0280008952.01.T01:intron 25.0%
! CAAATTTACCTTACAATACA+AGG - Chr2:42203777-42203796 MsG0280008952.01.T01:CDS 25.0%
! CAATAATGTTGGCAAATAAA+AGG + Chr2:42202486-42202505 None:intergenic 25.0%
! CACCAAATTATTGCTAAAAT+TGG - Chr2:42203631-42203650 MsG0280008952.01.T01:intron 25.0%
! CCAACTTATGAATAATACTT+TGG + Chr2:42202771-42202790 None:intergenic 25.0%
! GACTGAAATCGATAATATAT+CGG + Chr2:42202036-42202055 None:intergenic 25.0%
! TAATTACAACTACAATGACA+AGG + Chr2:42202712-42202731 None:intergenic 25.0%
! TTACAATACAAGGAAATAAC+TGG - Chr2:42203787-42203806 MsG0280008952.01.T01:CDS 25.0%
!! AGTTATTTCCTTGTATTGTA+AGG + Chr2:42203788-42203807 None:intergenic 25.0%
!! ATTTTTACATGTGTGAGATT+CGG - Chr2:42203431-42203450 MsG0280008952.01.T01:intron 25.0%
!! CCAAAGTATTATTCATAAGT+TGG - Chr2:42202768-42202787 MsG0280008952.01.T01:intron 25.0%
!! TATAAAATGCCATTTATCCA+AGG - Chr2:42203259-42203278 MsG0280008952.01.T01:intron 25.0%
!!! AAACTATTATGGTTTTTTCC+AGG - Chr2:42203900-42203919 MsG0280008952.01.T01:intron 25.0%
!!! AGAAAACATTTCTGGTTAAA+TGG + Chr2:42203344-42203363 None:intergenic 25.0%
!!! CATTATGTTACTACTTTTCA+AGG - Chr2:42203581-42203600 MsG0280008952.01.T01:intron 25.0%
!!! GGAAGTATTTGTATAAATTG+GGG - Chr2:42202234-42202253 MsG0280008952.01.T01:intron 25.0%
!!! GGGAAGTATTTGTATAAATT+GGG - Chr2:42202233-42202252 MsG0280008952.01.T01:intron 25.0%
!!! TATAGTTTGATTTTGGCAAA+TGG + Chr2:42203869-42203888 None:intergenic 25.0%
!!! TGGGAAGTATTTGTATAAAT+TGG - Chr2:42202232-42202251 MsG0280008952.01.T01:intron 25.0%
AAAACAAATCAGGATTGTCA+AGG - Chr2:42202941-42202960 MsG0280008952.01.T01:intron 30.0%
AAAGAAAAACACGTTTACTG+AGG + Chr2:42202369-42202388 None:intergenic 30.0%
AAATGGAGACAAATCTGTAT+TGG - Chr2:42203835-42203854 MsG0280008952.01.T01:intron 30.0%
AACTAATTCTCCCTTAAGTT+AGG + Chr2:42202616-42202635 None:intergenic 30.0%
AATGGAGACAAATCTGTATT+GGG - Chr2:42203836-42203855 MsG0280008952.01.T01:intron 30.0%
ACAATAGATGCAACTTTCAA+AGG - Chr2:42203463-42203482 MsG0280008952.01.T01:intron 30.0%
ACTGAGGAAATATGAAGAAT+AGG + Chr2:42202353-42202372 None:intergenic 30.0%
ATATCGGATATAGAACCAAA+AGG + Chr2:42202020-42202039 None:intergenic 30.0%
ATGATGCTTTATGTGAACAA+AGG - Chr2:42203377-42203396 MsG0280008952.01.T01:intron 30.0%
ATTTGCACCTAAAATTTGCA+AGG - Chr2:42203677-42203696 MsG0280008952.01.T01:intron 30.0%
CTTCTGCTATTCAATAATGT+TGG + Chr2:42202497-42202516 None:intergenic 30.0%
GTTGTAAAACAAACATGCTT+TGG - Chr2:42202732-42202751 MsG0280008952.01.T01:CDS 30.0%
TAACTTAAGGGAGAATTAGT+TGG - Chr2:42202615-42202634 MsG0280008952.01.T01:intron 30.0%
TACAACCTATCTAATCCATA+GGG + Chr2:42202163-42202182 None:intergenic 30.0%
TATCCAAGTCAAAGATGAAT+GGG + Chr2:42202463-42202482 None:intergenic 30.0%
TATCGGATATAGAACCAAAA+GGG + Chr2:42202019-42202038 None:intergenic 30.0%
TCACTTCATTCCTAACTTAA+GGG - Chr2:42202603-42202622 MsG0280008952.01.T01:intron 30.0%
TTTATGTGAACAAAGGCTTT+GGG - Chr2:42203384-42203403 MsG0280008952.01.T01:intron 30.0%
! TTTAGTTGAAAAAGCCCTTT+TGG - Chr2:42202002-42202021 MsG0280008952.01.T01:intron 30.0%
!! ATTTGTTTTTCCCTTCGAAA+TGG + Chr2:42202930-42202949 None:intergenic 30.0%
!! CTTTGGGACATGAAATATAA+GGG - Chr2:42203400-42203419 MsG0280008952.01.T01:intron 30.0%
!! GCTCTGAAAATTGTAGTAAT+CGG - Chr2:42202904-42202923 MsG0280008952.01.T01:intron 30.0%
!! TTGATAGTGTATGCATTTGT+CGG + Chr2:42203760-42203779 None:intergenic 30.0%
!! TTTCTGGTTAAATGGAGAAA+CGG + Chr2:42203336-42203355 None:intergenic 30.0%
!! TTTTGTTATCCTAGACATGA+AGG - Chr2:42202064-42202083 MsG0280008952.01.T01:intron 30.0%
ACTGCAACAGAAAACATTTC+TGG + Chr2:42203352-42203371 None:intergenic 35.0%
AGCATGCTCACATTAACAAA+GGG + Chr2:42202553-42202572 None:intergenic 35.0%
ATATCAGGCATACAACAACA+GGG + Chr2:42202657-42202676 None:intergenic 35.0%
CTCACTTCATTCCTAACTTA+AGG - Chr2:42202602-42202621 MsG0280008952.01.T01:intron 35.0%
CTTAAGTTAGGAATGAAGTG+AGG + Chr2:42202604-42202623 None:intergenic 35.0%
CTTTATGTGAACAAAGGCTT+TGG - Chr2:42203383-42203402 MsG0280008952.01.T01:intron 35.0%
GCTGTTGAAACAATTGAGAA+AGG - Chr2:42203116-42203135 MsG0280008952.01.T01:intron 35.0%
GGTACTTGTAGATAGATATC+AGG + Chr2:42202672-42202691 None:intergenic 35.0%
GTACAACCTATCTAATCCAT+AGG + Chr2:42202164-42202183 None:intergenic 35.0%
GTATCCAAGTCAAAGATGAA+TGG + Chr2:42202464-42202483 None:intergenic 35.0%
TACCTGTAATCGTATGTCAA+TGG + Chr2:42203986-42204005 None:intergenic 35.0%
TATGACTTTCAAGACATCCT+TGG + Chr2:42203279-42203298 None:intergenic 35.0%
TCAAGACATCCTTGGATAAA+TGG + Chr2:42203271-42203290 None:intergenic 35.0%
TTCGAAGGGAAAAACAAATC+AGG - Chr2:42202931-42202950 MsG0280008952.01.T01:intron 35.0%
TTTAGGTGCAAATCACTATC+AGG + Chr2:42203670-42203689 None:intergenic 35.0%
! TCCTTTTGTGAATAAAGCAG+TGG - Chr2:42202295-42202314 MsG0280008952.01.T01:intron 35.0%
!! AGTCTTGTTGAGTATTTGCT+AGG + Chr2:42202411-42202430 None:intergenic 35.0%
!! GCTTTGGGACATGAAATATA+AGG - Chr2:42203399-42203418 MsG0280008952.01.T01:intron 35.0%
!! TAGCAATAATTTGGTGCTGT+AGG + Chr2:42203627-42203646 None:intergenic 35.0%
AAGGTCTACAGAGATATGGA+TGG - Chr2:42202083-42202102 MsG0280008952.01.T01:intron 40.0%
ACCACTTCTCCAAACACAAT+TGG + Chr2:42203524-42203543 None:intergenic 40.0%
AGCCATTGACATACGATTAC+AGG - Chr2:42203981-42204000 MsG0280008952.01.T01:CDS 40.0%
ATGTGAGCATGCTCTGATAT+AGG - Chr2:42202560-42202579 MsG0280008952.01.T01:intron 40.0%
CATGAAGGTCTACAGAGATA+TGG - Chr2:42202079-42202098 MsG0280008952.01.T01:intron 40.0%
CCACTTCTCCAAACACAATT+GGG + Chr2:42203523-42203542 None:intergenic 40.0%
CTATCTAATCCATAGGGTGA+AGG + Chr2:42202157-42202176 None:intergenic 40.0%
CTATGTTTACCTTCACCCTA+TGG - Chr2:42202145-42202164 MsG0280008952.01.T01:intron 40.0%
GAGCATGCTCACATTAACAA+AGG + Chr2:42202554-42202573 None:intergenic 40.0%
GATATCAGGCATACAACAAC+AGG + Chr2:42202658-42202677 None:intergenic 40.0%
GCTCTAATGATTGTGTATGC+AGG - Chr2:42201900-42201919 MsG0280008952.01.T01:three_prime_UTR 40.0%
TAGTAATCGGCCATTTCGAA+GGG - Chr2:42202917-42202936 MsG0280008952.01.T01:intron 40.0%
TATCAGGCATACAACAACAG+GGG + Chr2:42202656-42202675 None:intergenic 40.0%
TCAATGCATAAGCTGCTCAA+AGG - Chr2:42202872-42202891 MsG0280008952.01.T01:intron 40.0%
! AATGGGAGCATGTTGTATGT+TGG + Chr2:42202446-42202465 None:intergenic 40.0%
! GCCACTGCTTTATTCACAAA+AGG + Chr2:42202299-42202318 None:intergenic 40.0%
! TGTACTCAGACTGAGTTTTG+TGG - Chr2:42203080-42203099 MsG0280008952.01.T01:intron 40.0%
!! CTTCACCCTATGGATTAGAT+AGG - Chr2:42202155-42202174 MsG0280008952.01.T01:intron 40.0%
!! TCAGACTGAGTTTTGTGGAT+GGG - Chr2:42203085-42203104 MsG0280008952.01.T01:intron 40.0%
!!! GTTTTTTCCAGGCAAGTAGA+TGG - Chr2:42203911-42203930 MsG0280008952.01.T01:intron 40.0%
AGAGCAAGTAGAACTGCAGT+TGG + Chr2:42201885-42201904 None:intergenic 45.0%
ATCAAGAGCAAGTACAGCAG+AGG + Chr2:42203558-42203577 None:intergenic 45.0%
CACAATTGGGATCACAGCTA+TGG + Chr2:42203510-42203529 None:intergenic 45.0%
CCCAATTGTGTTTGGAGAAG+TGG - Chr2:42203520-42203539 MsG0280008952.01.T01:intron 45.0%
CTCTGTAGACCTTCATGTCT+AGG + Chr2:42202076-42202095 None:intergenic 45.0%
GAGACAAATCTGTATTGGGC+TGG - Chr2:42203840-42203859 MsG0280008952.01.T01:intron 45.0%
GCTCCCATTCATCTTTGACT+TGG - Chr2:42202457-42202476 MsG0280008952.01.T01:CDS 45.0%
GCTGGTCGTTCAATAGAAGT+TGG - Chr2:42203956-42203975 MsG0280008952.01.T01:CDS 45.0%
GCTGTGATCCCAATTGTGTT+TGG - Chr2:42203512-42203531 MsG0280008952.01.T01:intron 45.0%
GTAGATGGTGAAACACGCAT+TGG - Chr2:42203926-42203945 MsG0280008952.01.T01:intron 45.0%
GTAGTAATCGGCCATTTCGA+AGG - Chr2:42202916-42202935 MsG0280008952.01.T01:intron 45.0%
TAAGCTGCTCAAAGGCTTGT+CGG - Chr2:42202880-42202899 MsG0280008952.01.T01:intron 45.0%
TGTTTCACCATCTACTTGCC+TGG + Chr2:42203921-42203940 None:intergenic 45.0%
! ACAAATCTGTATTGGGCTGG+AGG - Chr2:42203843-42203862 MsG0280008952.01.T01:intron 45.0%
! ACACGCATTGGTGTATTTGC+TGG - Chr2:42203938-42203957 MsG0280008952.01.T01:intron 45.0%
!! CAGACTGAGTTTTGTGGATG+GGG - Chr2:42203086-42203105 MsG0280008952.01.T01:intron 45.0%
!! CTCAGACTGAGTTTTGTGGA+TGG - Chr2:42203084-42203103 MsG0280008952.01.T01:intron 45.0%
!! TATAAAAAGATTAATTTAAA+AGG + Chr2:42201956-42201975 None:intergenic 5.0%
!!! ATTTTTAAGTATATATTTTT+TGG - Chr2:42203002-42203021 MsG0280008952.01.T01:intron 5.0%
!!! TTTTAAATTAATCTTTTTAT+AGG - Chr2:42201955-42201974 MsG0280008952.01.T01:intron 5.0%
!!! TTTTTAAGTATATATTTTTT+GGG - Chr2:42203003-42203022 MsG0280008952.01.T01:intron 5.0%
! AGCAGTGGCTCTGTTGTAGA+AGG - Chr2:42202310-42202329 MsG0280008952.01.T01:intron 50.0%
! AGTGGCTCTGTTGTAGAAGG+GGG - Chr2:42202313-42202332 MsG0280008952.01.T01:intron 50.0%
! CAGTGGCTCTGTTGTAGAAG+GGG - Chr2:42202312-42202331 MsG0280008952.01.T01:intron 50.0%
! GCAGTGGCTCTGTTGTAGAA+GGG - Chr2:42202311-42202330 MsG0280008952.01.T01:intron 50.0%
! GTTTTGTGGATGGGGAGTTG+AGG - Chr2:42203094-42203113 MsG0280008952.01.T01:intron 50.0%
Chromosome Type Strat End Strand Name
Chr2 gene 42201858 42204012 42201858 ID=MsG0280008952.01;Name=MsG0280008952.01
Chr2 mRNA 42201858 42204012 42201858 ID=MsG0280008952.01.T01;Parent=MsG0280008952.01;Name=MsG0280008952.01.T01;_AED=0.57;_eAED=0.73;_QI=0|0|0|0.8|0.5|0.6|5|90|137
Chr2 exon 42203949 42204012 42203949 ID=MsG0280008952.01.T01:exon:26245;Parent=MsG0280008952.01.T01
Chr2 exon 42203722 42203816 42203722 ID=MsG0280008952.01.T01:exon:26244;Parent=MsG0280008952.01.T01
Chr2 exon 42202703 42202781 42202703 ID=MsG0280008952.01.T01:exon:26243;Parent=MsG0280008952.01.T01
Chr2 exon 42202325 42202499 42202325 ID=MsG0280008952.01.T01:exon:26242;Parent=MsG0280008952.01.T01
Chr2 exon 42201858 42201948 42201858 ID=MsG0280008952.01.T01:exon:26241;Parent=MsG0280008952.01.T01
Chr2 CDS 42203949 42204012 42203949 ID=MsG0280008952.01.T01:cds;Parent=MsG0280008952.01.T01
Chr2 CDS 42203722 42203816 42203722 ID=MsG0280008952.01.T01:cds;Parent=MsG0280008952.01.T01
Chr2 CDS 42202703 42202781 42202703 ID=MsG0280008952.01.T01:cds;Parent=MsG0280008952.01.T01
Chr2 CDS 42202325 42202499 42202325 ID=MsG0280008952.01.T01:cds;Parent=MsG0280008952.01.T01
Chr2 CDS 42201948 42201948 42201948 ID=MsG0280008952.01.T01:cds;Parent=MsG0280008952.01.T01
Chr2 three_prime_UTR 42201858 42201947 42201858 ID=MsG0280008952.01.T01:three_prime_utr;Parent=MsG0280008952.01.T01
Gene Sequence

>MsG0280008952.01.T01

ATGTCGATGATGATGTTGGGTGCACCAACTGCAGTTCTACTTGCTCTAATGATTGTGTATGCAGTCATTCAAAGTTTTGTTATCCTAGACATGAAGGTCTACAGAGATATGGATGGAATGATTCTTGTTACTGCTATGAGCTTTAAGTTAAGAAACTATACTGAGTTTTGTGGATGGGGAGTTGAGGCTGTTGAAACAATTGAGAAAGGAGAGTTTATAATTGAGTATATTGGAGAAGTTATTGATGATGCTTTATGTGAACAAAGGCTTTGGGACATGAAATATAAGGGTGTGCAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCATCACGCTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTGGAGAAGTGGTTAG
Protein sequence

>MsG0280008952.01.T01

MSMMMLGAPTAVLLALMIVYAVIQSFVILDMKVYRDMDGMILVTAMSFKLRNYTEFCGWGVEAVETIEKGEFIIEYIGEVIDDALCEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVWRSG*