AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009022.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009022.01.T01 MTR_2g450710 98.070 570 11 0 1 570 1 570 0.0 1127
MsG0280009022.01.T01 MTR_4g116210 71.853 572 154 4 3 567 2 573 0.0 825
MsG0280009022.01.T01 MTR_4g073690 38.869 548 305 6 13 556 16 537 1.19e-119 365
MsG0280009022.01.T01 MTR_2g104250 54.624 346 111 8 226 568 2 304 6.25e-114 342
MsG0280009022.01.T01 MTR_5g022380 36.447 546 311 5 13 556 14 525 1.22e-103 323
MsG0280009022.01.T01 MTR_7g029015 35.243 576 348 8 10 562 13 586 2.42e-103 324
MsG0280009022.01.T01 MTR_3g099150 33.216 566 340 5 13 560 16 561 1.35e-94 300
MsG0280009022.01.T01 MTR_1g111510 31.022 548 354 6 13 553 27 557 5.59e-79 260
MsG0280009022.01.T01 MTR_2g100400 28.673 565 340 7 13 555 8 531 3.92e-76 251
MsG0280009022.01.T01 MTR_1g111540 30.419 549 356 6 13 553 27 557 1.74e-75 251
MsG0280009022.01.T01 MTR_1g050550 31.588 554 352 8 13 553 25 564 3.04e-75 250
MsG0280009022.01.T01 MTR_4g073690 38.250 400 222 5 13 408 16 394 1.48e-74 243
MsG0280009022.01.T01 MTR_1g111530 30.109 548 359 6 13 553 23 553 4.68e-74 247
MsG0280009022.01.T01 MTR_5g090570 29.091 550 346 7 11 552 10 523 3.46e-73 243
MsG0280009022.01.T01 MTR_1g059080 30.965 549 353 8 13 553 25 555 1.66e-72 243
MsG0280009022.01.T01 MTR_5g022380 34.831 445 254 5 114 556 5 415 5.73e-72 237
MsG0280009022.01.T01 MTR_1g111550 30.072 552 353 9 13 553 26 555 8.60e-72 241
MsG0280009022.01.T01 MTR_7g102880 29.910 555 360 8 13 553 30 569 5.13e-71 239
MsG0280009022.01.T01 MTR_7g083660 28.648 562 372 11 8 553 3 551 1.03e-52 189
MsG0280009022.01.T01 MTR_3g466040 29.872 549 332 13 13 552 8 512 1.00e-51 185
MsG0280009022.01.T01 MTR_3g466110 28.738 515 321 11 13 522 8 481 2.36e-46 170
MsG0280009022.01.T01 MTR_5g026350 26.758 583 369 16 5 553 1 559 5.19e-44 165
MsG0280009022.01.T01 MTR_8g071920 26.678 581 380 14 1 553 38 600 4.99e-43 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009022.01.T01 AT1G80530 56.614 567 233 6 3 567 4 559 0.0 641
MsG0280009022.01.T01 AT4G34950 36.953 571 319 10 13 562 17 567 1.27e-117 360
MsG0280009022.01.T01 AT2G16660 38.779 557 310 9 4 557 6 534 7.95e-112 344
MsG0280009022.01.T01 AT3G01930 34.507 568 343 6 13 556 17 579 3.86e-103 323
MsG0280009022.01.T01 AT5G14120 34.690 565 341 7 13 556 17 574 4.69e-103 323
MsG0280009022.01.T01 AT5G50520 32.784 546 337 5 13 556 17 534 1.28e-96 305
MsG0280009022.01.T01 AT5G50630 32.784 546 337 5 13 556 17 534 1.28e-96 305
MsG0280009022.01.T01 AT3G01930 34.047 467 279 6 114 556 5 466 1.60e-79 258
MsG0280009022.01.T01 AT2G39210 31.362 558 343 9 13 553 22 556 8.28e-79 260
MsG0280009022.01.T01 AT1G74780 28.901 564 340 7 10 555 5 525 2.52e-75 249
MsG0280009022.01.T01 AT2G28120 29.910 555 350 7 13 553 18 547 2.98e-75 250
MsG0280009022.01.T01 AT1G18940 28.191 564 337 8 10 556 7 519 5.22e-74 245
MsG0280009022.01.T01 AT2G16660 38.480 408 225 8 4 408 6 390 5.73e-71 233
MsG0280009022.01.T01 AT3G01930 32.783 424 258 5 13 414 17 435 2.63e-67 225
MsG0280009022.01.T01 AT2G34350 27.531 563 348 8 9 557 4 520 2.28e-64 219
MsG0280009022.01.T01 AT2G34350 27.531 563 348 8 9 557 4 520 2.28e-64 219
MsG0280009022.01.T01 AT2G34355 27.599 558 344 10 13 557 8 518 9.55e-61 210
MsG0280009022.01.T01 AT4G19450 29.197 548 347 18 5 527 1 532 2.82e-51 185
MsG0280009022.01.T01 AT3G01630 27.500 560 352 15 13 555 24 546 1.98e-49 180
MsG0280009022.01.T01 AT3G01630 27.321 560 353 15 13 555 42 564 2.65e-49 180
MsG0280009022.01.T01 AT1G31470 28.648 562 352 15 8 555 39 565 6.21e-49 179
MsG0280009022.01.T01 AT5G45275 28.125 576 367 16 5 553 1 556 3.06e-48 177
MsG0280009022.01.T01 AT2G30300 27.007 548 335 11 12 552 7 496 1.55e-45 168
MsG0280009022.01.T01 AT4G19450 29.512 410 266 11 5 397 1 404 8.51e-40 150
MsG0280009022.01.T01 AT2G34355 26.667 420 254 10 149 562 2 373 2.71e-37 142

Find 148 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTGTGCAATACCTATT+TGG 0.143470 2:-43654296 None:intergenic
TATCCTGCAGTTGCATTTCT+TGG 0.144057 2:+43655104 MsG0280009022.01.T01:CDS
CTTCTTGCAACTACAATATT+TGG 0.152503 2:+43653853 MsG0280009022.01.T01:CDS
TCTTATGAAGTTCAAAATTT+TGG 0.168795 2:+43655635 MsG0280009022.01.T01:three_prime_UTR
GGATACAATGTCATCTTTAT+AGG 0.210882 2:-43653958 None:intergenic
TAAGCCCTCCATAACCTTTC+AGG 0.212073 2:-43653624 None:intergenic
TTCCTCTTGTTTCTTGCTAT+TGG 0.219101 2:+43653703 MsG0280009022.01.T01:CDS
CGTTACAGTTTCCTATATTT+TGG 0.222603 2:+43653894 MsG0280009022.01.T01:CDS
CAAAGACAAGTTACACTTCT+TGG 0.242796 2:+43651984 MsG0280009022.01.T01:CDS
CTATTGTAAAGGCTGATTTC+TGG 0.243696 2:+43654211 MsG0280009022.01.T01:CDS
CACTCTTTGAAATCTGTATT+AGG 0.255833 2:+43651954 MsG0280009022.01.T01:CDS
TAGGAAACTGTAACGCTAAA+TGG 0.264028 2:-43653886 None:intergenic
TGAACTTCATAAGACTAAAA+AGG 0.269107 2:-43655626 None:intergenic
CTTGGTGTTGCTAATGATAT+TGG 0.276726 2:+43652002 MsG0280009022.01.T01:CDS
TTATTGGTTATGGTGTTCTT+TGG 0.279793 2:+43652108 MsG0280009022.01.T01:CDS
TCAGCATGATGTTTCTTGTT+AGG 0.288348 2:+43653743 MsG0280009022.01.T01:CDS
AATTGATTCCAAGAACATTC+TGG 0.297197 2:+43655012 MsG0280009022.01.T01:CDS
GGTATGAACCTTCTTGCTTC+TGG 0.297388 2:+43655302 MsG0280009022.01.T01:CDS
AAGGAAGATTAGTGAGTGTT+TGG 0.299072 2:-43652142 None:intergenic
CTTTCTGGTGTTTGTGCTGC+TGG 0.305716 2:+43655371 MsG0280009022.01.T01:CDS
GCAACTTTGCCTCGACTAAC+AGG 0.309330 2:-43653595 None:intergenic
CAAGAAGTGTAACTTGTCTT+TGG 0.322346 2:-43651983 None:intergenic
GACAATCATACCAACAAATA+AGG 0.325266 2:-43652161 None:intergenic
TCCAAGTTGTTGCTCAGATT+TGG 0.327405 2:-43653992 None:intergenic
CACTAATCTTCCTTATTTGT+TGG 0.328606 2:+43652151 MsG0280009022.01.T01:CDS
GATACAATGTCATCTTTATA+GGG 0.329052 2:-43653957 None:intergenic
ATAGCTATGCTTCTTGCATT+AGG 0.332645 2:+43654123 MsG0280009022.01.T01:CDS
ACCTTGTGCAATACCTATTT+GGG 0.338454 2:-43654295 None:intergenic
GAAATGCAACTGCAGGATAA+AGG 0.341737 2:-43655100 None:intergenic
TTCAAAGAGTGTGAGTATAA+AGG 0.357400 2:-43651942 None:intergenic
CTCAATAATCTAGCCCAAAT+AGG 0.364180 2:+43654282 MsG0280009022.01.T01:CDS
AAGCAATAGGCTGTAAATTT+CGG 0.365295 2:-43653662 None:intergenic
GCATATAGCATTTGGTAAAC+AGG 0.368770 2:-43655431 None:intergenic
ATCTTTATAGGGACGGCAAT+TGG 0.381656 2:-43653946 None:intergenic
AGAAGTGGTCGGGATCATTA+TGG 0.381841 2:-43655150 None:intergenic
CATGTCAACCAGAATGTTCT+TGG 0.386538 2:-43655020 None:intergenic
TGGCAAATGAGAAACGAGTT+TGG 0.391198 2:+43655712 MsG0280009022.01.T01:three_prime_UTR
CATCACAGCCACCAAAATAT+AGG 0.391811 2:-43653905 None:intergenic
TGTAATTTCGTTGGTCGGCT+TGG 0.395382 2:+43654357 MsG0280009022.01.T01:CDS
ATTTAGCAACGTCATGTCAT+TGG 0.396543 2:+43655202 MsG0280009022.01.T01:CDS
GTTAGTCGAGGCAAAGTTGC+AGG 0.398544 2:+43653598 MsG0280009022.01.T01:CDS
CCAATGTTCTAGTGTTGTCT+TGG 0.408540 2:+43653822 MsG0280009022.01.T01:CDS
AGGATTAGGAGCAGCAGTTT+GGG 0.412292 2:+43651887 MsG0280009022.01.T01:CDS
TAGGATTAGGAGCAGCAGTT+TGG 0.414794 2:+43651886 MsG0280009022.01.T01:CDS
CCTTTCTTAGCATGCCGGTT+AGG 0.415053 2:+43655676 MsG0280009022.01.T01:three_prime_UTR
GAAAACGTTGGTTTGCTTCC+TGG 0.417316 2:+43652026 MsG0280009022.01.T01:CDS
GGTCTATTATTATATACTAA+TGG 0.420071 2:+43655541 MsG0280009022.01.T01:three_prime_UTR
AAGAAGAATTATGAAGCAAT+AGG 0.424243 2:-43653675 None:intergenic
AGACCACCATGGGTAGGATT+AGG 0.425417 2:+43651873 MsG0280009022.01.T01:CDS
AGCCTCCAGCATATAGCATT+TGG 0.425767 2:-43655439 None:intergenic
CTGCTTGGATCTTCGTCAAC+AGG 0.426375 2:+43654060 MsG0280009022.01.T01:CDS
GCAGGAATCCTGAAAGGTTA+TGG 0.430058 2:+43653616 MsG0280009022.01.T01:CDS
AGGAAGATTAGTGAGTGTTT+GGG 0.433376 2:-43652141 None:intergenic
TTGAAATCTTCCCCACGTTT+AGG 0.436160 2:-43654177 None:intergenic
CTGTTTGCCTTTGCTGTCAA+CGG 0.441029 2:+43655074 MsG0280009022.01.T01:CDS
TTTAGCAACGTCATGTCATT+GGG 0.441767 2:+43655203 MsG0280009022.01.T01:CDS
ATCATGCTGAAGCAAACAAC+TGG 0.444918 2:-43653730 None:intergenic
AAATGCAACTGCAGGATAAA+GGG 0.445686 2:-43655099 None:intergenic
GCATTTCTTGGTGTCTGCTA+TGG 0.448322 2:+43655116 MsG0280009022.01.T01:CDS
GGTTAGGCTTAAAATGATAC+TGG 0.454479 2:+43655692 MsG0280009022.01.T01:three_prime_UTR
TCATCCAATGCTGGGGTACA+AGG 0.454637 2:-43653766 None:intergenic
CTGCTAGCAGAGCTGAGAAA+AGG 0.462898 2:-43655244 None:intergenic
TAGGCCTTGTACCCCAGCAT+TGG 0.463441 2:+43653762 MsG0280009022.01.T01:CDS
TGAGCAACAACTTGGATCTT+CGG 0.465719 2:+43653999 MsG0280009022.01.T01:CDS
TCAGATTTGGAAGCTGACTT+AGG 0.465982 2:-43653979 None:intergenic
GTCGAGTCTTCATCCAATGC+TGG 0.467716 2:-43653775 None:intergenic
TCCAAATCTGAGCAACAACT+TGG 0.467863 2:+43653991 MsG0280009022.01.T01:CDS
GGCAAATGAGAAACGAGTTT+GGG 0.468909 2:+43655713 MsG0280009022.01.T01:three_prime_UTR
TTCGTTGGTCGGCTTGGTGG+AGG 0.471454 2:+43654363 MsG0280009022.01.T01:CDS
CTTGGATCTTCGGACTCACT+TGG 0.473693 2:+43654009 MsG0280009022.01.T01:CDS
CACACAGACAGTCATGCTAT+TGG 0.476236 2:+43655043 MsG0280009022.01.T01:CDS
CAATGTTCTAGTGTTGTCTT+GGG 0.477116 2:+43653823 MsG0280009022.01.T01:CDS
ACTTGGAAGCTCGAACGATC+AGG 0.484627 2:+43654086 MsG0280009022.01.T01:CDS
CCTAACCGGCATGCTAAGAA+AGG 0.485459 2:-43655676 None:intergenic
GCTTCTGGTGTTTCCTGCAT+CGG 0.489460 2:+43655317 MsG0280009022.01.T01:CDS
AATTTCGTTGGTCGGCTTGG+TGG 0.492427 2:+43654360 MsG0280009022.01.T01:CDS
TAGCGAGTCGAAGTTGTTTG+AGG 0.493532 2:-43655473 None:intergenic
CCAAGACAACACTAGAACAT+TGG 0.497246 2:-43653822 None:intergenic
GACAAAATAGAGCCACTGCT+TGG 0.501331 2:+43654045 MsG0280009022.01.T01:CDS
AAAGCAACTTGCGCCGATGC+AGG 0.503359 2:-43655330 None:intergenic
TGCTAGCAGAGCTGAGAAAA+GGG 0.504635 2:-43655243 None:intergenic
GTTTACCAAATGCTATATGC+TGG 0.508292 2:+43655434 MsG0280009022.01.T01:CDS
CAATGCCTTTCTTAGCATGC+CGG 0.511462 2:+43655671 MsG0280009022.01.T01:three_prime_UTR
AACAGGGAAATTTCTCATGT+TGG 0.512143 2:-43653578 None:intergenic
ATTTACTGAGGCTATTGTAA+AGG 0.512246 2:+43654200 MsG0280009022.01.T01:CDS
GAAAATTGATAGCAAGGTTG+TGG 0.517751 2:-43654328 None:intergenic
TCGAGTCTTCATCCAATGCT+GGG 0.521285 2:-43653774 None:intergenic
TCTTCGTCAACAGGAGCACT+TGG 0.528509 2:+43654069 MsG0280009022.01.T01:CDS
ACAACTTCGACTCGCTAAGA+TGG 0.530539 2:+43655479 MsG0280009022.01.T01:exon
AGTGAGATTGAGTGATGAGT+GGG 0.534677 2:-43651779 None:intergenic
GTTTGGGTACAAATAGCATC+AGG 0.536263 2:+43651903 MsG0280009022.01.T01:CDS
CTTGTAATAAGTTCCCACCT+TGG 0.538578 2:+43652054 MsG0280009022.01.T01:CDS
TCGGGATCATTATGGAAACT+TGG 0.539067 2:-43655142 None:intergenic
ATGCTTCTTGCATTAGGTGA+GGG 0.544819 2:+43654129 MsG0280009022.01.T01:CDS
AAAATGACATTAACTCTGAA+AGG 0.556850 2:+43651843 MsG0280009022.01.T01:exon
AAAACTGAAAATTGATAGCA+AGG 0.558499 2:-43654334 None:intergenic
AGGTTCTATATATGATAAAG+AGG 0.558563 2:+43655265 MsG0280009022.01.T01:CDS
AGGAGGAAGCAGACCACCAT+GGG 0.572334 2:+43651863 MsG0280009022.01.T01:CDS
TACTGTTGGTAGCAATAACA+AGG 0.581074 2:-43653525 None:intergenic
CACAAAGTATTAACCAAGGT+GGG 0.586603 2:-43652067 None:intergenic
ACACCAAGAAATGCAACTGC+AGG 0.588929 2:-43655107 None:intergenic
CAATGTCATCTTTATAGGGA+CGG 0.589901 2:-43653953 None:intergenic
GAGGCTCAACTATGTATACA+TGG 0.590423 2:-43655593 None:intergenic
AGAAATTTCCCTGTTAGTCG+AGG 0.590583 2:+43653586 MsG0280009022.01.T01:CDS
TCTTCGGACTCACTTGGTCA+AGG 0.594988 2:+43654015 MsG0280009022.01.T01:CDS
CCTTGGTTAATACTTTGTGT+CGG 0.599857 2:+43652071 MsG0280009022.01.T01:CDS
TATGCTTCTTGCATTAGGTG+AGG 0.600486 2:+43654128 MsG0280009022.01.T01:CDS
AAGGGTTCCGTTGACAGCAA+AGG 0.602189 2:-43655081 None:intergenic
GAGTGAGATTGAGTGATGAG+TGG 0.603588 2:-43651780 None:intergenic
AATGATATTGGTGAAAACGT+TGG 0.608952 2:+43652014 MsG0280009022.01.T01:CDS
TTGCTACCAACAGTAGTGCA+TGG 0.613451 2:+43653533 MsG0280009022.01.T01:CDS
AGGAAACACCAGAAGCAAGA+AGG 0.614653 2:-43655310 None:intergenic
GGAATCCTGAAAGGTTATGG+AGG 0.617892 2:+43653619 MsG0280009022.01.T01:CDS
ATGTCATTGGGAAATCCACT+TGG 0.618155 2:+43655215 MsG0280009022.01.T01:CDS
GCTGCTCCTAATCCTACCCA+TGG 0.619566 2:-43651879 None:intergenic
GCTCCTAATCCTACCCATGG+TGG 0.626355 2:-43651876 None:intergenic
CAACTTTGCCTCGACTAACA+GGG 0.626773 2:-43653594 None:intergenic
AACTTATTACAAGCAATACC+AGG 0.627598 2:-43652044 None:intergenic
AAAGTTGCAGGAATCCTGAA+AGG 0.633309 2:+43653610 MsG0280009022.01.T01:CDS
TACCAAATGCTATATGCTGG+AGG 0.640117 2:+43655437 MsG0280009022.01.T01:CDS
GGAAGCAGACCACCATGGGT+AGG 0.640432 2:+43651867 MsG0280009022.01.T01:CDS
GAAGAGAAAGCCTAAACGTG+GGG 0.642169 2:+43654167 MsG0280009022.01.T01:CDS
GGTTAACCATGCACTACTGT+TGG 0.642627 2:-43653539 None:intergenic
GAATCCTGAAAGGTTATGGA+GGG 0.643870 2:+43653620 MsG0280009022.01.T01:CDS
TACCAATAGCAAGAAACAAG+AGG 0.643906 2:-43653705 None:intergenic
GGAAGATTTCAAATTTACTG+AGG 0.644691 2:+43654188 MsG0280009022.01.T01:CDS
AAGGAGGAAGCAGACCACCA+TGG 0.647010 2:+43651862 MsG0280009022.01.T01:CDS
TGACAGCAAAGGCAAACAGA+AGG 0.653493 2:-43655070 None:intergenic
ATGGCAGTGAAAGACAAGGA+GGG 0.655922 2:-43655574 None:intergenic
AAGAAACATGTGAAGTAGCG+TGG 0.656000 2:-43651739 None:intergenic
TGAGTGGGAAATGAGTTAAG+AGG 0.656898 2:-43651764 None:intergenic
TGGCAGTGAAAGACAAGGAG+GGG 0.657545 2:-43655573 None:intergenic
CGAGTCTTCATCCAATGCTG+GGG 0.657838 2:-43653773 None:intergenic
AGAAGAGAAAGCCTAAACGT+GGG 0.661182 2:+43654166 MsG0280009022.01.T01:CDS
GAGAAAAGGGTTGCTCCAAG+TGG 0.663381 2:-43655230 None:intergenic
ATGACATTAACTCTGAAAGG+AGG 0.664036 2:+43651846 MsG0280009022.01.T01:CDS
AAGAAGAGAAAGCCTAAACG+TGG 0.664370 2:+43654165 MsG0280009022.01.T01:CDS
ACACAAAGTATTAACCAAGG+TGG 0.664430 2:-43652068 None:intergenic
AAAGAGGCAGCAAAACAGCA+TGG 0.673536 2:+43655281 MsG0280009022.01.T01:CDS
CATGGCAGTGAAAGACAAGG+AGG 0.690615 2:-43655575 None:intergenic
GTTGACGAAGATCCAAGCAG+TGG 0.694574 2:-43654057 None:intergenic
GCCCAAATAGGTATTGCACA+AGG 0.696360 2:+43654294 MsG0280009022.01.T01:CDS
GTTGGTCACAAGAACCGCGG+TGG 0.720966 2:-43653560 None:intergenic
CATGTTGGTCACAAGAACCG+CGG 0.721810 2:-43653563 None:intergenic
ATACATGGCAGTGAAAGACA+AGG 0.732791 2:-43655578 None:intergenic
CCGACACAAAGTATTAACCA+AGG 0.749062 2:-43652071 None:intergenic
ACTGTTGGTAGCAATAACAA+GGG 0.750092 2:-43653524 None:intergenic
TAGTGCATGGTTAACCACCG+CGG 0.795410 2:+43653546 MsG0280009022.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTAAAATTTTAGTTA+TGG + Chr2:43653404-43653423 MsG0280009022.01.T01:intron 10.0%
!! AAAATCTCAATAGTATTTAT+CGG - Chr2:43652744-43652763 None:intergenic 15.0%
!! AAACAAACAAATTAATATGT+AGG - Chr2:43652789-43652808 None:intergenic 15.0%
!! TATGTAATAGCTTATTAAAT+AGG - Chr2:43654668-43654687 None:intergenic 15.0%
!!! AAAATAAGTTGAAAATACTT+AGG + Chr2:43654774-43654793 MsG0280009022.01.T01:intron 15.0%
!!! ACATATAAGAGATTATATTT+TGG + Chr2:43654683-43654702 MsG0280009022.01.T01:intron 15.0%
!!! TAAAATTTTAAAATTGCACA+AGG - Chr2:43653400-43653419 None:intergenic 15.0%
!! AATAAGCAAAAAAACTTATG+TGG - Chr2:43654745-43654764 None:intergenic 20.0%
!! ATGTATACAACATGTTTATT+GGG - Chr2:43653270-43653289 None:intergenic 20.0%
!! ATTTGAAAAAAGCTAAACTT+TGG + Chr2:43654572-43654591 MsG0280009022.01.T01:intron 20.0%
!! CAATGAATAGATTGATTATT+TGG + Chr2:43654887-43654906 MsG0280009022.01.T01:intron 20.0%
!! GGTCTATTATTATATACTAA+TGG + Chr2:43655541-43655560 MsG0280009022.01.T01:three_prime_UTR 20.0%
!! TATGTATACAACATGTTTAT+TGG - Chr2:43653271-43653290 None:intergenic 20.0%
!!! AATTTTGTTTCCTCATAAAA+AGG - Chr2:43653003-43653022 None:intergenic 20.0%
!!! ATAAGAGATTATATTTTGGT+TGG + Chr2:43654687-43654706 MsG0280009022.01.T01:intron 20.0%
!!! ATTTGATTTCTTCAATTCTA+AGG - Chr2:43652873-43652892 None:intergenic 20.0%
!!! CTGTTTTTTGTTTATTTTGT+TGG + Chr2:43654237-43654256 MsG0280009022.01.T01:CDS 20.0%
!!! CTTCTTTTTTTTTTAAACTC+CGG + Chr2:43652210-43652229 MsG0280009022.01.T01:intron 20.0%
!!! GCAATTTTTTTTTTCTTTTC+TGG + Chr2:43653029-43653048 MsG0280009022.01.T01:intron 20.0%
!!! TCTTATGAAGTTCAAAATTT+TGG + Chr2:43655635-43655654 MsG0280009022.01.T01:three_prime_UTR 20.0%
!!! TTAATGTCATTTTGTGTTTT+GGG - Chr2:43651836-43651855 None:intergenic 20.0%
! AAAATGACATTAACTCTGAA+AGG + Chr2:43651843-43651862 MsG0280009022.01.T01:exon 25.0%
! AAGAAGAATTATGAAGCAAT+AGG - Chr2:43653678-43653697 None:intergenic 25.0%
! ACGTGCTTATTATATGAATT+TGG + Chr2:43652578-43652597 MsG0280009022.01.T01:intron 25.0%
! AGGTTCTATATATGATAAAG+AGG + Chr2:43655265-43655284 MsG0280009022.01.T01:CDS 25.0%
! ATATATGATACTATGTGCTT+TGG + Chr2:43652505-43652524 MsG0280009022.01.T01:intron 25.0%
! ATGAGATGAGCAATTATAAA+AGG - Chr2:43652275-43652294 None:intergenic 25.0%
! GAAGTTAAATTAGATCTAAC+AGG - Chr2:43652194-43652213 None:intergenic 25.0%
! GATACAATGTCATCTTTATA+GGG - Chr2:43653960-43653979 None:intergenic 25.0%
! TACATGAGTAAATCACAATT+AGG - Chr2:43653483-43653502 None:intergenic 25.0%
! TGAACTTCATAAGACTAAAA+AGG - Chr2:43655629-43655648 None:intergenic 25.0%
!! AAAACTGAAAATTGATAGCA+AGG - Chr2:43654337-43654356 None:intergenic 25.0%
!! CATTAGTCTAACATTTGAAT+TGG - Chr2:43654645-43654664 None:intergenic 25.0%
!! GGATTGATTTAACTATGTAT+TGG + Chr2:43652475-43652494 MsG0280009022.01.T01:intron 25.0%
!! TATTTGGAATAGATTATCAG+CGG + Chr2:43654903-43654922 MsG0280009022.01.T01:intron 25.0%
!! TGAGTTTTACGAAATTATAG+TGG - Chr2:43654619-43654638 None:intergenic 25.0%
!! TGTTTTGTATAATGATCTGT+CGG + Chr2:43655779-43655798 MsG0280009022.01.T01:three_prime_UTR 25.0%
!! TTCAGTTTTTGTAATTTCGT+TGG + Chr2:43654348-43654367 MsG0280009022.01.T01:CDS 25.0%
!!! CTTTGAGATTAATGAAATCA+TGG + Chr2:43654537-43654556 MsG0280009022.01.T01:intron 25.0%
!!! GTTAATGTCATTTTGTGTTT+TGG - Chr2:43651837-43651856 None:intergenic 25.0%
!!! TAATGTCATTTTGTGTTTTG+GGG - Chr2:43651835-43651854 None:intergenic 25.0%
!!! TTTGCTTCTTTTATTGGTTA+TGG + Chr2:43652098-43652117 MsG0280009022.01.T01:CDS 25.0%
!!! TTTGTTTATTTTGTTGGTGT+TGG + Chr2:43654243-43654262 MsG0280009022.01.T01:CDS 25.0%
!!! TTTTTTTTCTTTTCTGGATC+TGG + Chr2:43653035-43653054 MsG0280009022.01.T01:intron 25.0%
AAAAACAAGCATAGGAAGTT+AGG - Chr2:43652348-43652367 None:intergenic 30.0%
AACTTATTACAAGCAATACC+AGG - Chr2:43652047-43652066 None:intergenic 30.0%
AAGCAATAGGCTGTAAATTT+CGG - Chr2:43653665-43653684 None:intergenic 30.0%
AATAAAAACAGACACAGTCT+AGG + Chr2:43655520-43655539 MsG0280009022.01.T01:three_prime_UTR 30.0%
AATGATATTGGTGAAAACGT+TGG + Chr2:43652014-43652033 MsG0280009022.01.T01:CDS 30.0%
ACACTGTACCAAAAAAACAA+CGG - Chr2:43653190-43653209 None:intergenic 30.0%
ACTTCATAAGACTAAAAAGG+TGG - Chr2:43655626-43655645 None:intergenic 30.0%
ATCGTCAAAAACAGAGAAAT+TGG - Chr2:43654981-43655000 None:intergenic 30.0%
ATTTACTGAGGCTATTGTAA+AGG + Chr2:43654200-43654219 MsG0280009022.01.T01:CDS 30.0%
CTTCTTGCAACTACAATATT+TGG + Chr2:43653853-43653872 MsG0280009022.01.T01:CDS 30.0%
GACAATCATACCAACAAATA+AGG - Chr2:43652164-43652183 None:intergenic 30.0%
GGAAGATTTCAAATTTACTG+AGG + Chr2:43654188-43654207 MsG0280009022.01.T01:CDS 30.0%
GGATACAATGTCATCTTTAT+AGG - Chr2:43653961-43653980 None:intergenic 30.0%
TGAGATTAATGAAATCATGG+TGG + Chr2:43654540-43654559 MsG0280009022.01.T01:intron 30.0%
TTATAATTGCTCATCTCATC+CGG + Chr2:43652276-43652295 MsG0280009022.01.T01:intron 30.0%
TTATTATCAGCGTTCAATGA+CGG - Chr2:43654833-43654852 None:intergenic 30.0%
! AAATCACAATTAGGCCTTTT+CGG - Chr2:43653474-43653493 None:intergenic 30.0%
! AATTGATTCCAAGAACATTC+TGG + Chr2:43655012-43655031 MsG0280009022.01.T01:CDS 30.0%
! AGATAATCAGCCTTTTTATG+AGG + Chr2:43652990-43653009 MsG0280009022.01.T01:intron 30.0%
! AGCATTAATGTGTCTAAAAC+TGG + Chr2:43652674-43652693 MsG0280009022.01.T01:intron 30.0%
! AGTATCATTTTAAGCCTAAC+CGG - Chr2:43655693-43655712 None:intergenic 30.0%
! CACTAATCTTCCTTATTTGT+TGG + Chr2:43652151-43652170 MsG0280009022.01.T01:CDS 30.0%
! CGTTACAGTTTCCTATATTT+TGG + Chr2:43653894-43653913 MsG0280009022.01.T01:CDS 30.0%
! GTTTTTGTAATTTCGTTGGT+CGG + Chr2:43654352-43654371 MsG0280009022.01.T01:CDS 30.0%
! TACCAAAAAAACAACGGATT+TGG - Chr2:43653184-43653203 None:intergenic 30.0%
! TGTGATGATTTTTCTTCTCA+TGG + Chr2:43653921-43653940 MsG0280009022.01.T01:CDS 30.0%
! TTATTGGTTATGGTGTTCTT+TGG + Chr2:43652108-43652127 MsG0280009022.01.T01:CDS 30.0%
! TTCAAAGAGTGTGAGTATAA+AGG - Chr2:43651945-43651964 None:intergenic 30.0%
! TTGACGTTTTTCATTCTTTC+TGG + Chr2:43655356-43655375 MsG0280009022.01.T01:CDS 30.0%
!! CACTCTTTGAAATCTGTATT+AGG + Chr2:43651954-43651973 MsG0280009022.01.T01:CDS 30.0%
!! GGTTTTCTTTTTTGCTAGTT+AGG + Chr2:43652526-43652545 MsG0280009022.01.T01:intron 30.0%
!! TACAGTTTCCTATATTTTGG+TGG + Chr2:43653897-43653916 MsG0280009022.01.T01:CDS 30.0%
!! TGTCTTTTAAAGACAATTGC+TGG + Chr2:43652609-43652628 MsG0280009022.01.T01:intron 30.0%
!! TTGTTTCAGAGTATTTTGTC+AGG + Chr2:43654388-43654407 MsG0280009022.01.T01:CDS 30.0%
!!! AATGTCATTTTGTGTTTTGG+GGG - Chr2:43651834-43651853 None:intergenic 30.0%
!!! ATCCAAATCCGTTGTTTTTT+TGG + Chr2:43653179-43653198 MsG0280009022.01.T01:intron 30.0%
!!! CTGTGTCTGTTTTTATTCAT+TGG - Chr2:43655517-43655536 None:intergenic 30.0%
!!! TTCCCATCTTTTTTCATCTT+CGG - Chr2:43653369-43653388 None:intergenic 30.0%
AAACTCGCAAAAACAAGCAT+AGG - Chr2:43652356-43652375 None:intergenic 35.0%
AAAGACAATTGCTGGATTTG+TGG + Chr2:43652617-43652636 MsG0280009022.01.T01:intron 35.0%
AAATGCAACTGCAGGATAAA+GGG - Chr2:43655102-43655121 None:intergenic 35.0%
AACAGGGAAATTTCTCATGT+TGG - Chr2:43653581-43653600 None:intergenic 35.0%
AAGGAAGATTAGTGAGTGTT+TGG - Chr2:43652145-43652164 None:intergenic 35.0%
ACCTTGTGCAATACCTATTT+GGG - Chr2:43654298-43654317 None:intergenic 35.0%
AGGAAGATTAGTGAGTGTTT+GGG - Chr2:43652144-43652163 None:intergenic 35.0%
AGTTACGATCTGAAAAAACG+TGG + Chr2:43654466-43654485 MsG0280009022.01.T01:intron 35.0%
ATAGCTATGCTTCTTGCATT+AGG + Chr2:43654123-43654142 MsG0280009022.01.T01:CDS 35.0%
ATGTTTATTGGGTAACAGGA+AGG - Chr2:43653259-43653278 None:intergenic 35.0%
ATTTAGCAACGTCATGTCAT+TGG + Chr2:43655202-43655221 MsG0280009022.01.T01:CDS 35.0%
CAAAGACAAGTTACACTTCT+TGG + Chr2:43651984-43652003 MsG0280009022.01.T01:CDS 35.0%
CAACATGTTTATTGGGTAAC+AGG - Chr2:43653263-43653282 None:intergenic 35.0%
CAATGAAAACATGCTCAGTA+AGG - Chr2:43652918-43652937 None:intergenic 35.0%
CAATGTCATCTTTATAGGGA+CGG - Chr2:43653956-43653975 None:intergenic 35.0%
CAATGTTCTAGTGTTGTCTT+GGG + Chr2:43653823-43653842 MsG0280009022.01.T01:CDS 35.0%
CCTTGGTTAATACTTTGTGT+CGG + Chr2:43652071-43652090 MsG0280009022.01.T01:CDS 35.0%
CTCAATAATCTAGCCCAAAT+AGG + Chr2:43654282-43654301 MsG0280009022.01.T01:CDS 35.0%
CTGGATTTGTGGCTTATTAA+AGG + Chr2:43652628-43652647 MsG0280009022.01.T01:intron 35.0%
GAACCTTCAAATTCATCCAT+GGG - Chr2:43653114-43653133 None:intergenic 35.0%
GATTTGTGGCTTATTAAAGG+AGG + Chr2:43652631-43652650 MsG0280009022.01.T01:intron 35.0%
GCATATAGCATTTGGTAAAC+AGG - Chr2:43655434-43655453 None:intergenic 35.0%
GGTTAGGCTTAAAATGATAC+TGG + Chr2:43655692-43655711 MsG0280009022.01.T01:three_prime_UTR 35.0%
GTCCGAAGATGAAAAAAGAT+GGG + Chr2:43653364-43653383 MsG0280009022.01.T01:intron 35.0%
GTGTATGTTGAATTGACTAC+TGG + Chr2:43653154-43653173 MsG0280009022.01.T01:intron 35.0%
GTTACGATCTGAAAAAACGT+GGG + Chr2:43654467-43654486 MsG0280009022.01.T01:intron 35.0%
GTTTACCAAATGCTATATGC+TGG + Chr2:43655434-43655453 MsG0280009022.01.T01:CDS 35.0%
TACCAATAGCAAGAAACAAG+AGG - Chr2:43653708-43653727 None:intergenic 35.0%
TAGGAAACTGTAACGCTAAA+TGG - Chr2:43653889-43653908 None:intergenic 35.0%
TCAGCATGATGTTTCTTGTT+AGG + Chr2:43653743-43653762 MsG0280009022.01.T01:CDS 35.0%
TGAACCTTCAAATTCATCCA+TGG - Chr2:43653115-43653134 None:intergenic 35.0%
TGAGCTAAAAAATGCACATC+TGG - Chr2:43652310-43652329 None:intergenic 35.0%
TGTCCGAAGATGAAAAAAGA+TGG + Chr2:43653363-43653382 MsG0280009022.01.T01:intron 35.0%
TGTTTATTGGGTAACAGGAA+GGG - Chr2:43653258-43653277 None:intergenic 35.0%
TTACGATCTGAAAAAACGTG+GGG + Chr2:43654468-43654487 MsG0280009022.01.T01:intron 35.0%
TTATTAAAGGAGGTAGGAAG+TGG + Chr2:43652641-43652660 MsG0280009022.01.T01:intron 35.0%
TTGAGCAATCATCATCATCT+AGG + Chr2:43652397-43652416 MsG0280009022.01.T01:intron 35.0%
TTTAGCAACGTCATGTCATT+GGG + Chr2:43655203-43655222 MsG0280009022.01.T01:CDS 35.0%
TTTCAGATCGTAACTGATAG+CGG - Chr2:43654461-43654480 None:intergenic 35.0%
! ACACAAAGTATTAACCAAGG+TGG - Chr2:43652071-43652090 None:intergenic 35.0%
! ATGACATTAACTCTGAAAGG+AGG + Chr2:43651846-43651865 MsG0280009022.01.T01:CDS 35.0%
! CAAGAAGTGTAACTTGTCTT+TGG - Chr2:43651986-43652005 None:intergenic 35.0%
! CACAAAGTATTAACCAAGGT+GGG - Chr2:43652070-43652089 None:intergenic 35.0%
! CTATTGTAAAGGCTGATTTC+TGG + Chr2:43654211-43654230 MsG0280009022.01.T01:CDS 35.0%
! GAAAATTGATAGCAAGGTTG+TGG - Chr2:43654331-43654350 None:intergenic 35.0%
! GATGATGATGATTGCTCAAT+AGG - Chr2:43652396-43652415 None:intergenic 35.0%
! GGTGCTTTTGCTTCTTTTAT+TGG + Chr2:43652092-43652111 MsG0280009022.01.T01:CDS 35.0%
! TTCCTCTTGTTTCTTGCTAT+TGG + Chr2:43653703-43653722 MsG0280009022.01.T01:CDS 35.0%
!! ACTGTTGGTAGCAATAACAA+GGG - Chr2:43653527-43653546 None:intergenic 35.0%
!! CTTGGTGTTGCTAATGATAT+TGG + Chr2:43652002-43652021 MsG0280009022.01.T01:CDS 35.0%
!! GAGTTTTTGAGCAATTCAAG+AGG + Chr2:43652370-43652389 MsG0280009022.01.T01:intron 35.0%
!! TACTGTTGGTAGCAATAACA+AGG - Chr2:43653528-43653547 None:intergenic 35.0%
!!! ATTTTGTGTTTTGGGGGTTT+TGG - Chr2:43651828-43651847 None:intergenic 35.0%
!!! CTCTGTTTTTGACGATTTTC+AGG + Chr2:43654985-43655004 MsG0280009022.01.T01:intron 35.0%
!!! CTTTTTGGTTTGAGGAACTT+TGG + Chr2:43655176-43655195 MsG0280009022.01.T01:CDS 35.0%
!!! TTTTGTGTTTTGGGGGTTTT+GGG - Chr2:43651827-43651846 None:intergenic 35.0%
AAAGTTGCAGGAATCCTGAA+AGG + Chr2:43653610-43653629 MsG0280009022.01.T01:CDS 40.0%
AAGAAACATGTGAAGTAGCG+TGG - Chr2:43651742-43651761 None:intergenic 40.0%
AAGAAGAGAAAGCCTAAACG+TGG + Chr2:43654165-43654184 MsG0280009022.01.T01:CDS 40.0%
AATAGTGCGCTGCACAAAAA+CGG - Chr2:43654498-43654517 None:intergenic 40.0%
AGAAATTTCCCTGTTAGTCG+AGG + Chr2:43653586-43653605 MsG0280009022.01.T01:CDS 40.0%
AGAAGAGAAAGCCTAAACGT+GGG + Chr2:43654166-43654185 MsG0280009022.01.T01:CDS 40.0%
AGTGAGATTGAGTGATGAGT+GGG - Chr2:43651782-43651801 None:intergenic 40.0%
ATACATGGCAGTGAAAGACA+AGG - Chr2:43655581-43655600 None:intergenic 40.0%
ATAGGAAGTTAGGACTGGAT+CGG - Chr2:43652338-43652357 None:intergenic 40.0%
ATCATGCTGAAGCAAACAAC+TGG - Chr2:43653733-43653752 None:intergenic 40.0%
ATCTTTATAGGGACGGCAAT+TGG - Chr2:43653949-43653968 None:intergenic 40.0%
ATGCAACATTGAACTCTGCA+CGG - Chr2:43653430-43653449 None:intergenic 40.0%
ATGCTTCTTGCATTAGGTGA+GGG + Chr2:43654129-43654148 MsG0280009022.01.T01:CDS 40.0%
ATGTCATTGGGAAATCCACT+TGG + Chr2:43655215-43655234 MsG0280009022.01.T01:CDS 40.0%
CAAACCAAAAAGCTCAGAAG+TGG - Chr2:43655168-43655187 None:intergenic 40.0%
CACCTTGTGCAATACCTATT+TGG - Chr2:43654299-43654318 None:intergenic 40.0%
CAGACAAGGTCAACTAATGT+CGG - Chr2:43653335-43653354 None:intergenic 40.0%
CATCACAGCCACCAAAATAT+AGG - Chr2:43653908-43653927 None:intergenic 40.0%
CATGTATCATGTTGCAGCTT+TGG + Chr2:43653497-43653516 MsG0280009022.01.T01:intron 40.0%
CATGTCAACCAGAATGTTCT+TGG - Chr2:43655023-43655042 None:intergenic 40.0%
CCAAGACAACACTAGAACAT+TGG - Chr2:43653825-43653844 None:intergenic 40.0%
CCAATGTTCTAGTGTTGTCT+TGG + Chr2:43653822-43653841 MsG0280009022.01.T01:CDS 40.0%
CGCACTATTTAGTGCATGTT+TGG + Chr2:43654509-43654528 MsG0280009022.01.T01:intron 40.0%
CTATCGAGCAATTATTGTCC+CGG - Chr2:43652251-43652270 None:intergenic 40.0%
CTTGTAATAAGTTCCCACCT+TGG + Chr2:43652054-43652073 MsG0280009022.01.T01:CDS 40.0%
GAAATGCAACTGCAGGATAA+AGG - Chr2:43655103-43655122 None:intergenic 40.0%
GAATCCTGAAAGGTTATGGA+GGG + Chr2:43653620-43653639 MsG0280009022.01.T01:CDS 40.0%
GAGGCTCAACTATGTATACA+TGG - Chr2:43655596-43655615 None:intergenic 40.0%
GGCAAATGAGAAACGAGTTT+GGG + Chr2:43655713-43655732 MsG0280009022.01.T01:three_prime_UTR 40.0%
GTTGGTATTACGATCGAAGT+AGG + Chr2:43654705-43654724 MsG0280009022.01.T01:intron 40.0%
GTTTGGGTACAAATAGCATC+AGG + Chr2:43651903-43651922 MsG0280009022.01.T01:CDS 40.0%
TACCAAATGCTATATGCTGG+AGG + Chr2:43655437-43655456 MsG0280009022.01.T01:CDS 40.0%
TATCCTGCAGTTGCATTTCT+TGG + Chr2:43655104-43655123 MsG0280009022.01.T01:CDS 40.0%
TATGCTTCTTGCATTAGGTG+AGG + Chr2:43654128-43654147 MsG0280009022.01.T01:CDS 40.0%
TCAATGATGATATGCACCCA+TGG + Chr2:43653095-43653114 MsG0280009022.01.T01:intron 40.0%
TCCAAATCTGAGCAACAACT+TGG + Chr2:43653991-43654010 MsG0280009022.01.T01:CDS 40.0%
TCCAAGTTGTTGCTCAGATT+TGG - Chr2:43653995-43654014 None:intergenic 40.0%
TCGGGATCATTATGGAAACT+TGG - Chr2:43655145-43655164 None:intergenic 40.0%
TGAGCAACAACTTGGATCTT+CGG + Chr2:43653999-43654018 MsG0280009022.01.T01:CDS 40.0%
TGAGTGGGAAATGAGTTAAG+AGG - Chr2:43651767-43651786 None:intergenic 40.0%
TGGCAAATGAGAAACGAGTT+TGG + Chr2:43655712-43655731 MsG0280009022.01.T01:three_prime_UTR 40.0%
TGTGGCTTATTAAAGGAGGT+AGG + Chr2:43652635-43652654 MsG0280009022.01.T01:intron 40.0%
TTATCAGCGGTATACTACAG+TGG + Chr2:43654916-43654935 MsG0280009022.01.T01:intron 40.0%
TTGAAATCTTCCCCACGTTT+AGG - Chr2:43654180-43654199 None:intergenic 40.0%
! CCGACACAAAGTATTAACCA+AGG - Chr2:43652074-43652093 None:intergenic 40.0%
! TCAGATTTGGAAGCTGACTT+AGG - Chr2:43653982-43654001 None:intergenic 40.0%
!! ATCTGGATTGCTTGCTGTTA+AGG + Chr2:43653052-43653071 MsG0280009022.01.T01:intron 40.0%
!! CTAAAAAGGTGGTGTCATTG+AGG - Chr2:43655615-43655634 None:intergenic 40.0%
!!! CAGACGTATTTTGACCGAAA+AGG + Chr2:43653457-43653476 MsG0280009022.01.T01:intron 40.0%
!!! CTTCTGAGCTTTTTGGTTTG+AGG + Chr2:43655168-43655187 MsG0280009022.01.T01:CDS 40.0%
!!! GGTTTTGGGTTGTGTTGTTT+TGG - Chr2:43651813-43651832 None:intergenic 40.0%
!!! TATTTTGTTGGTGTTGGCAC+TGG + Chr2:43654249-43654268 MsG0280009022.01.T01:CDS 40.0%
AAAGAGGCAGCAAAACAGCA+TGG + Chr2:43655281-43655300 MsG0280009022.01.T01:CDS 45.0%
ACACCAAGAAATGCAACTGC+AGG - Chr2:43655110-43655129 None:intergenic 45.0%
AGAAGTGGTCGGGATCATTA+TGG - Chr2:43655153-43655172 None:intergenic 45.0%
AGCCTCCAGCATATAGCATT+TGG - Chr2:43655442-43655461 None:intergenic 45.0%
AGGAAACACCAGAAGCAAGA+AGG - Chr2:43655313-43655332 None:intergenic 45.0%
AGGATTAGGAGCAGCAGTTT+GGG + Chr2:43651887-43651906 MsG0280009022.01.T01:CDS 45.0%
ATCCATACAACGCTTTGCTC+TGG - Chr2:43652459-43652478 None:intergenic 45.0%
ATGGCAGTGAAAGACAAGGA+GGG - Chr2:43655577-43655596 None:intergenic 45.0%
CAAAAAGCTCAGAAGTGGTC+GGG - Chr2:43655163-43655182 None:intergenic 45.0%
CAACTTTGCCTCGACTAACA+GGG - Chr2:43653597-43653616 None:intergenic 45.0%
CAAGCATAGGAAGTTAGGAC+TGG - Chr2:43652343-43652362 None:intergenic 45.0%
CAATGCCTTTCTTAGCATGC+CGG + Chr2:43655671-43655690 MsG0280009022.01.T01:three_prime_UTR 45.0%
CACACAGACAGTCATGCTAT+TGG + Chr2:43655043-43655062 MsG0280009022.01.T01:CDS 45.0%
CCAAAAAGCTCAGAAGTGGT+CGG - Chr2:43655164-43655183 None:intergenic 45.0%
CGGGACAATAATTGCTCGAT+AGG + Chr2:43652249-43652268 MsG0280009022.01.T01:intron 45.0%
GAAGAGAAAGCCTAAACGTG+GGG + Chr2:43654167-43654186 MsG0280009022.01.T01:CDS 45.0%
GACAAAATAGAGCCACTGCT+TGG + Chr2:43654045-43654064 MsG0280009022.01.T01:CDS 45.0%
GAGTGAGATTGAGTGATGAG+TGG - Chr2:43651783-43651802 None:intergenic 45.0%
GATCTGAAAAAACGTGGGGT+GGG + Chr2:43654472-43654491 MsG0280009022.01.T01:intron 45.0%
GCACCCATGGATGAATTTGA+AGG + Chr2:43653108-43653127 MsG0280009022.01.T01:intron 45.0%
GCAGGAATCCTGAAAGGTTA+TGG + Chr2:43653616-43653635 MsG0280009022.01.T01:CDS 45.0%
GGAATCCTGAAAGGTTATGG+AGG + Chr2:43653619-43653638 MsG0280009022.01.T01:CDS 45.0%
GGTATGAACCTTCTTGCTTC+TGG + Chr2:43655302-43655321 MsG0280009022.01.T01:CDS 45.0%
GGTTAACCATGCACTACTGT+TGG - Chr2:43653542-43653561 None:intergenic 45.0%
TAAGCCCTCCATAACCTTTC+AGG - Chr2:43653627-43653646 None:intergenic 45.0%
TAGCGAGTCGAAGTTGTTTG+AGG - Chr2:43655476-43655495 None:intergenic 45.0%
TAGGATTAGGAGCAGCAGTT+TGG + Chr2:43651886-43651905 MsG0280009022.01.T01:CDS 45.0%
TCGAGTCTTCATCCAATGCT+GGG - Chr2:43653777-43653796 None:intergenic 45.0%
TGACAGCAAAGGCAAACAGA+AGG - Chr2:43655073-43655092 None:intergenic 45.0%
TGCTAGCAGAGCTGAGAAAA+GGG - Chr2:43655246-43655265 None:intergenic 45.0%
TGTAATTTCGTTGGTCGGCT+TGG + Chr2:43654357-43654376 MsG0280009022.01.T01:CDS 45.0%
TTGCTACCAACAGTAGTGCA+TGG + Chr2:43653533-43653552 MsG0280009022.01.T01:CDS 45.0%
! ACAACTTCGACTCGCTAAGA+TGG + Chr2:43655479-43655498 MsG0280009022.01.T01:exon 45.0%
! CTGTTTGCCTTTGCTGTCAA+CGG + Chr2:43655074-43655093 MsG0280009022.01.T01:CDS 45.0%
! GCCCAAATAGGTATTGCACA+AGG + Chr2:43654294-43654313 MsG0280009022.01.T01:CDS 45.0%
! TAGTGGCACTGTGATTTTGC+TGG - Chr2:43654602-43654621 None:intergenic 45.0%
! TGCACATCTGGAGTTAAGAC+CGG - Chr2:43652298-43652317 None:intergenic 45.0%
!! GAAAACGTTGGTTTGCTTCC+TGG + Chr2:43652026-43652045 MsG0280009022.01.T01:CDS 45.0%
!! GCATTTCTTGGTGTCTGCTA+TGG + Chr2:43655116-43655135 MsG0280009022.01.T01:CDS 45.0%
!! TCGTAACTGATAGCGGCTTA+AGG - Chr2:43654454-43654473 None:intergenic 45.0%
AAGGGTTCCGTTGACAGCAA+AGG - Chr2:43655084-43655103 None:intergenic 50.0%
AATGTCGGAAACGCTGCATG+TGG - Chr2:43653320-43653339 None:intergenic 50.0%
ACTTGGAAGCTCGAACGATC+AGG + Chr2:43654086-43654105 MsG0280009022.01.T01:CDS 50.0%
AGACCACCATGGGTAGGATT+AGG + Chr2:43651873-43651892 MsG0280009022.01.T01:CDS 50.0%
ATGTCGGAAACGCTGCATGT+GGG - Chr2:43653319-43653338 None:intergenic 50.0%
CATGGCAGTGAAAGACAAGG+AGG - Chr2:43655578-43655597 None:intergenic 50.0%
CATGTTGGTCACAAGAACCG+CGG - Chr2:43653566-43653585 None:intergenic 50.0%
CCGGATCAGTCAATCTAAGC+CGG - Chr2:43652232-43652251 None:intergenic 50.0%
CCGGCTTAGATTGACTGATC+CGG + Chr2:43652229-43652248 MsG0280009022.01.T01:intron 50.0%
CCTAACCGGCATGCTAAGAA+AGG - Chr2:43655679-43655698 None:intergenic 50.0%
CGAGTCTTCATCCAATGCTG+GGG - Chr2:43653776-43653795 None:intergenic 50.0%
CGATCTGAAAAAACGTGGGG+TGG + Chr2:43654471-43654490 MsG0280009022.01.T01:intron 50.0%
CGGACAAACGAAGTCAGACA+AGG - Chr2:43653349-43653368 None:intergenic 50.0%
CGGCTTAGATTGACTGATCC+GGG + Chr2:43652230-43652249 MsG0280009022.01.T01:intron 50.0%
CTGCTAGCAGAGCTGAGAAA+AGG - Chr2:43655247-43655266 None:intergenic 50.0%
CTGCTTGGATCTTCGTCAAC+AGG + Chr2:43654060-43654079 MsG0280009022.01.T01:CDS 50.0%
CTTGGATCTTCGGACTCACT+TGG + Chr2:43654009-43654028 MsG0280009022.01.T01:CDS 50.0%
GAGAAAAGGGTTGCTCCAAG+TGG - Chr2:43655233-43655252 None:intergenic 50.0%
GCAACTTTGCCTCGACTAAC+AGG - Chr2:43653598-43653617 None:intergenic 50.0%
GCTTCTGGTGTTTCCTGCAT+CGG + Chr2:43655317-43655336 MsG0280009022.01.T01:CDS 50.0%
GTCGAGTCTTCATCCAATGC+TGG - Chr2:43653778-43653797 None:intergenic 50.0%
GTTAGTCGAGGCAAAGTTGC+AGG + Chr2:43653598-43653617 MsG0280009022.01.T01:CDS 50.0%
GTTGACGAAGATCCAAGCAG+TGG - Chr2:43654060-43654079 None:intergenic 50.0%
TAATCCCACCGTCCGTTAGT+GGG + Chr2:43652422-43652441 MsG0280009022.01.T01:intron 50.0%
TAGTGCATGGTTAACCACCG+CGG + Chr2:43653546-43653565 MsG0280009022.01.T01:CDS 50.0%
TCATCCAATGCTGGGGTACA+AGG - Chr2:43653769-43653788 None:intergenic 50.0%
TCTTCGGACTCACTTGGTCA+AGG + Chr2:43654015-43654034 MsG0280009022.01.T01:CDS 50.0%
TGGCAGTGAAAGACAAGGAG+GGG - Chr2:43655576-43655595 None:intergenic 50.0%
! CCGACCACTTCTGAGCTTTT+TGG + Chr2:43655161-43655180 MsG0280009022.01.T01:CDS 50.0%
! CCTTTCTTAGCATGCCGGTT+AGG + Chr2:43655676-43655695 MsG0280009022.01.T01:three_prime_UTR 50.0%
! CTTTCTGGTGTTTGTGCTGC+TGG + Chr2:43655371-43655390 MsG0280009022.01.T01:CDS 50.0%
! CTTTTCTCAGCTCTGCTAGC+AGG + Chr2:43655245-43655264 MsG0280009022.01.T01:CDS 50.0%
! GCTTTGCTCTGGCTTCAACT+GGG - Chr2:43652448-43652467 None:intergenic 50.0%
!! AATTTCGTTGGTCGGCTTGG+TGG + Chr2:43654360-43654379 MsG0280009022.01.T01:CDS 50.0%
!! AGCCAGAGCAAAGCGTTGTA+TGG + Chr2:43652454-43652473 MsG0280009022.01.T01:intron 50.0%
!! TCTTCGTCAACAGGAGCACT+TGG + Chr2:43654069-43654088 MsG0280009022.01.T01:CDS 50.0%
AAGGAGGAAGCAGACCACCA+TGG + Chr2:43651862-43651881 MsG0280009022.01.T01:CDS 55.0%
AGGAGGAAGCAGACCACCAT+GGG + Chr2:43651863-43651882 MsG0280009022.01.T01:CDS 55.0%
CTAATCCCACCGTCCGTTAG+TGG + Chr2:43652421-43652440 MsG0280009022.01.T01:intron 55.0%
GCTCCTAATCCTACCCATGG+TGG - Chr2:43651879-43651898 None:intergenic 55.0%
GCTGCTCCTAATCCTACCCA+TGG - Chr2:43651882-43651901 None:intergenic 55.0%
GCTTCAACTGGGCCCACTAA+CGG - Chr2:43652437-43652456 None:intergenic 55.0%
! AAAGCAACTTGCGCCGATGC+AGG - Chr2:43655333-43655352 None:intergenic 55.0%
! CGCTTTGCTCTGGCTTCAAC+TGG - Chr2:43652449-43652468 None:intergenic 55.0%
! TAGGCCTTGTACCCCAGCAT+TGG + Chr2:43653762-43653781 MsG0280009022.01.T01:CDS 55.0%
CAACTGGGCCCACTAACGGA+CGG - Chr2:43652433-43652452 None:intergenic 60.0%
GGAAGCAGACCACCATGGGT+AGG + Chr2:43651867-43651886 MsG0280009022.01.T01:CDS 60.0%
GTTGGTCACAAGAACCGCGG+TGG - Chr2:43653563-43653582 None:intergenic 60.0%
!! TTCGTTGGTCGGCTTGGTGG+AGG + Chr2:43654363-43654382 MsG0280009022.01.T01:CDS 60.0%
! TGGGCCCACTAACGGACGGT+GGG - Chr2:43652429-43652448 None:intergenic 65.0%
! CTGGGCCCACTAACGGACGG+TGG - Chr2:43652430-43652449 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 43651728 43655984 43651728 ID=MsG0280009022.01;Name=MsG0280009022.01
Chr2 mRNA 43651728 43655984 43651728 ID=MsG0280009022.01.T01;Parent=MsG0280009022.01;Name=MsG0280009022.01.T01;_AED=0.24;_eAED=0.24;_QI=118|1|1|1|1|1|3|488|570
Chr2 exon 43655007 43655984 43655007 ID=MsG0280009022.01.T01:exon:17225;Parent=MsG0280009022.01.T01
Chr2 exon 43653514 43654409 43653514 ID=MsG0280009022.01.T01:exon:17224;Parent=MsG0280009022.01.T01
Chr2 exon 43651728 43652172 43651728 ID=MsG0280009022.01.T01:exon:17223;Parent=MsG0280009022.01.T01
Chr2 five_prime_UTR 43651728 43651845 43651728 ID=MsG0280009022.01.T01:five_prime_utr;Parent=MsG0280009022.01.T01
Chr2 CDS 43651846 43652172 43651846 ID=MsG0280009022.01.T01:cds;Parent=MsG0280009022.01.T01
Chr2 CDS 43653514 43654409 43653514 ID=MsG0280009022.01.T01:cds;Parent=MsG0280009022.01.T01
Chr2 CDS 43655007 43655496 43655007 ID=MsG0280009022.01.T01:cds;Parent=MsG0280009022.01.T01
Chr2 three_prime_UTR 43655497 43655984 43655497 ID=MsG0280009022.01.T01:three_prime_utr;Parent=MsG0280009022.01.T01
Gene Sequence

>MsG0280009022.01.T01

ATGACATTAACTCTGAAAGGAGGAAGCAGACCACCATGGGTAGGATTAGGAGCAGCAGTTTGGGTACAAATAGCATCAGGAAACACTTTTACTTTTCCTTTATACTCACACTCTTTGAAATCTGTATTAGGTTTTAACCAAAGACAAGTTACACTTCTTGGTGTTGCTAATGATATTGGTGAAAACGTTGGTTTGCTTCCTGGTATTGCTTGTAATAAGTTCCCACCTTGGTTAATACTTTGTGTCGGTGCTTTTGCTTCTTTTATTGGTTATGGTGTTCTTTGGCTTGCTGTTTCCCAAACACTCACTAATCTTCCTTATTTGTTGCTTTGGTTTGCCCTTGTTATTGCTACCAACAGTAGTGCATGGTTAACCACCGCGGTTCTTGTGACCAACATGAGAAATTTCCCTGTTAGTCGAGGCAAAGTTGCAGGAATCCTGAAAGGTTATGGAGGGCTTAGTGCTGCTGTTTTCACCGAAATTTACAGCCTATTGCTTCATAATTCTTCTTCTACGTTCCTCTTGTTTCTTGCTATTGGTATTCCAGTTGTTTGCTTCAGCATGATGTTTCTTGTTAGGCCTTGTACCCCAGCATTGGATGAAGACTCGACATCTAATTCTCATTTTATATTTATCCAATGTTCTAGTGTTGTCTTGGGTGTATATCTTCTTGCAACTACAATATTTGGCAATCTTATTCCATTTAGCGTTACAGTTTCCTATATTTTGGTGGCTGTGATGATTTTTCTTCTCATGGCTCCAATTGCCGTCCCTATAAAGATGACATTGTATCCTAAGTCAGCTTCCAAATCTGAGCAACAACTTGGATCTTCGGACTCACTTGGTCAAGGCAAAGATGACAAAATAGAGCCACTGCTTGGATCTTCGTCAACAGGAGCACTTGGAAGCTCGAACGATCAGGATGATTCATCTGAAATAGCTATGCTTCTTGCATTAGGTGAGGGAGCAATAAAGCAGAAGAAGAGAAAGCCTAAACGTGGGGAAGATTTCAAATTTACTGAGGCTATTGTAAAGGCTGATTTCTGGCTACTGTTTTTTGTTTATTTTGTTGGTGTTGGCACTGGTGTTACTGTTCTCAATAATCTAGCCCAAATAGGTATTGCACAAGGTGAAGAAGATACCACAACCTTGCTATCAATTTTCAGTTTTTGTAATTTCGTTGGTCGGCTTGGTGGAGGAGTTGTTTCAGAGTATTTTGTCAGGACAAAATTGATTCCAAGAACATTCTGGTTGACATGCACACAGACAGTCATGCTATTGGTATACCTTCTGTTTGCCTTTGCTGTCAACGGAACCCTTTATCCTGCAGTTGCATTTCTTGGTGTCTGCTATGGTGTCCAAGTTTCCATAATGATCCCGACCACTTCTGAGCTTTTTGGTTTGAGGAACTTTGGTGTATTTAGCAACGTCATGTCATTGGGAAATCCACTTGGAGCAACCCTTTTCTCAGCTCTGCTAGCAGGTTCTATATATGATAAAGAGGCAGCAAAACAGCATGGTATGAACCTTCTTGCTTCTGGTGTTTCCTGCATCGGCGCAAGTTGCTTTAAGTTGACGTTTTTCATTCTTTCTGGTGTTTGTGCTGCTGGTATCATCTTGAGCATTATTCTGACTTTGAGAATCAAGCCTGTTTACCAAATGCTATATGCTGGAGGCTCTTTCAGACTTCCTCAAACAACTTCGACTCGCTAA
Protein sequence

>MsG0280009022.01.T01

MTLTLKGGSRPPWVGLGAAVWVQIASGNTFTFPLYSHSLKSVLGFNQRQVTLLGVANDIGENVGLLPGIACNKFPPWLILCVGAFASFIGYGVLWLAVSQTLTNLPYLLLWFALVIATNSSAWLTTAVLVTNMRNFPVSRGKVAGILKGYGGLSAAVFTEIYSLLLHNSSSTFLLFLAIGIPVVCFSMMFLVRPCTPALDEDSTSNSHFIFIQCSSVVLGVYLLATTIFGNLIPFSVTVSYILVAVMIFLLMAPIAVPIKMTLYPKSASKSEQQLGSSDSLGQGKDDKIEPLLGSSSTGALGSSNDQDDSSEIAMLLALGEGAIKQKKRKPKRGEDFKFTEAIVKADFWLLFFVYFVGVGTGVTVLNNLAQIGIAQGEEDTTTLLSIFSFCNFVGRLGGGVVSEYFVRTKLIPRTFWLTCTQTVMLLVYLLFAFAVNGTLYPAVAFLGVCYGVQVSIMIPTTSELFGLRNFGVFSNVMSLGNPLGATLFSALLAGSIYDKEAAKQHGMNLLASGVSCIGASCFKLTFFILSGVCAAGIILSIILTLRIKPVYQMLYAGGSFRLPQTTSTR*