Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009207.01.T01 | XP_013463952.1 | 98.272 | 405 | 7 | 0 | 1 | 405 | 1 | 405 | 0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009207.01.T01 | Q2MJ19 | 98.272 | 405 | 7 | 0 | 1 | 405 | 1 | 405 | 0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280007260.01 | MsG0280009207.01 | 0.890445 | 9.793856e-74 | 8.235371e-70 |
| MsG0280007986.01 | MsG0280009207.01 | 0.834373 | 3.112313e-56 | 3.686475e-53 |
| MsG0280009198.01 | MsG0280009207.01 | 0.850729 | 1.406406e-60 | 2.781232e-57 |
| MsG0280009206.01 | MsG0280009207.01 | 0.940206 | 3.466931e-100 | 3.737575e-95 |
| MsG0280009207.01 | MsG0780039312.01 | 0.835411 | 1.704903e-56 | 2.083177e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009207.01.T01 | MTR_2g055470 | 98.272 | 405 | 7 | 0 | 1 | 405 | 1 | 405 | 0.0 | 823 |
| MsG0280009207.01.T01 | MTR_2g055430 | 95.062 | 405 | 20 | 0 | 1 | 405 | 1 | 405 | 0.0 | 799 |
| MsG0280009207.01.T01 | MTR_2g055430 | 95.503 | 378 | 17 | 0 | 1 | 378 | 1 | 378 | 0.0 | 749 |
| MsG0280009207.01.T01 | MTR_2g072250 | 69.018 | 397 | 123 | 0 | 9 | 405 | 5 | 401 | 0.0 | 587 |
| MsG0280009207.01.T01 | MTR_2g023680 | 68.148 | 405 | 129 | 0 | 1 | 405 | 1 | 405 | 0.0 | 583 |
| MsG0280009207.01.T01 | MTR_5g095230 | 66.247 | 397 | 134 | 0 | 9 | 405 | 5 | 401 | 0.0 | 569 |
| MsG0280009207.01.T01 | MTR_2g023680 | 67.624 | 383 | 124 | 0 | 1 | 383 | 1 | 383 | 0.0 | 555 |
| MsG0280009207.01.T01 | MTR_2g072400 | 61.692 | 402 | 152 | 2 | 6 | 405 | 2 | 403 | 0.0 | 540 |
| MsG0280009207.01.T01 | MTR_5g095230 | 66.667 | 372 | 124 | 0 | 9 | 380 | 5 | 376 | 0.0 | 537 |
| MsG0280009207.01.T01 | MTR_2g072340 | 62.438 | 402 | 149 | 2 | 6 | 405 | 2 | 403 | 0.0 | 531 |
| MsG0280009207.01.T01 | MTR_2g072260 | 67.969 | 384 | 123 | 0 | 22 | 405 | 15 | 398 | 0.0 | 530 |
| MsG0280009207.01.T01 | MTR_2g072380 | 59.079 | 391 | 134 | 2 | 16 | 405 | 13 | 378 | 3.12e-161 | 462 |
| MsG0280009207.01.T01 | MTR_8g042000 | 52.985 | 402 | 182 | 6 | 5 | 400 | 6 | 406 | 7.09e-152 | 440 |
| MsG0280009207.01.T01 | MTR_2g072270 | 51.724 | 406 | 188 | 5 | 6 | 405 | 7 | 410 | 1.06e-148 | 432 |
| MsG0280009207.01.T01 | MTR_8g042020 | 51.605 | 405 | 189 | 5 | 6 | 405 | 8 | 410 | 2.35e-148 | 431 |
| MsG0280009207.01.T01 | MTR_8g042060 | 51.351 | 407 | 191 | 5 | 5 | 405 | 6 | 411 | 1.62e-146 | 426 |
| MsG0280009207.01.T01 | MTR_8g042000 | 52.591 | 386 | 176 | 6 | 5 | 384 | 6 | 390 | 3.49e-146 | 421 |
| MsG0280009207.01.T01 | MTR_4g031820 | 48.507 | 402 | 202 | 5 | 7 | 405 | 16 | 415 | 5.83e-131 | 387 |
| MsG0280009207.01.T01 | MTR_8g042040 | 47.174 | 407 | 191 | 6 | 5 | 405 | 6 | 394 | 6.33e-130 | 384 |
| MsG0280009207.01.T01 | MTR_4g031820 | 47.757 | 379 | 193 | 5 | 7 | 382 | 16 | 392 | 2.23e-123 | 363 |
| MsG0280009207.01.T01 | MTR_8g042060 | 45.946 | 407 | 177 | 6 | 5 | 405 | 6 | 375 | 5.25e-120 | 357 |
| MsG0280009207.01.T01 | MTR_2g072310 | 66.387 | 238 | 80 | 0 | 168 | 405 | 1 | 238 | 9.39e-120 | 352 |
| MsG0280009207.01.T01 | MTR_4g031820 | 45.522 | 402 | 192 | 4 | 7 | 405 | 16 | 393 | 1.09e-119 | 357 |
| MsG0280009207.01.T01 | MTR_2g072380 | 66.807 | 238 | 79 | 0 | 168 | 405 | 1 | 238 | 8.37e-119 | 350 |
| MsG0280009207.01.T01 | MTR_2g055530 | 77.376 | 221 | 12 | 1 | 41 | 261 | 6 | 188 | 2.63e-117 | 340 |
| MsG0280009207.01.T01 | MTR_2g072330 | 56.989 | 279 | 113 | 3 | 6 | 282 | 2 | 275 | 4.54e-113 | 337 |
| MsG0280009207.01.T01 | MTR_2g072330 | 66.667 | 57 | 19 | 0 | 349 | 405 | 276 | 332 | 1.20e-17 | 84.7 |
| MsG0280009207.01.T01 | MTR_4g113650 | 37.101 | 407 | 227 | 8 | 16 | 405 | 12 | 406 | 1.04e-81 | 260 |
| MsG0280009207.01.T01 | MTR_1g085680 | 31.017 | 403 | 266 | 6 | 10 | 405 | 6 | 403 | 1.32e-66 | 221 |
| MsG0280009207.01.T01 | MTR_6g017325 | 31.421 | 401 | 257 | 6 | 12 | 405 | 9 | 398 | 3.83e-63 | 211 |
| MsG0280009207.01.T01 | MTR_2g072330 | 56.548 | 168 | 67 | 2 | 116 | 282 | 2 | 164 | 1.26e-62 | 204 |
| MsG0280009207.01.T01 | MTR_2g072330 | 66.667 | 57 | 19 | 0 | 349 | 405 | 165 | 221 | 3.38e-18 | 85.1 |
| MsG0280009207.01.T01 | MTR_7g098550 | 34.286 | 385 | 240 | 7 | 25 | 405 | 21 | 396 | 4.73e-62 | 208 |
| MsG0280009207.01.T01 | MTR_1g022040 | 31.362 | 389 | 254 | 6 | 21 | 405 | 15 | 394 | 2.65e-60 | 204 |
| MsG0280009207.01.T01 | MTR_7g098550 | 33.506 | 385 | 235 | 8 | 25 | 405 | 21 | 388 | 3.78e-57 | 195 |
| MsG0280009207.01.T01 | MTR_7g098550 | 33.705 | 359 | 225 | 7 | 25 | 379 | 21 | 370 | 6.16e-55 | 186 |
| MsG0280009207.01.T01 | MTR_7g006900 | 32.249 | 369 | 234 | 6 | 44 | 405 | 4 | 363 | 1.83e-53 | 185 |
| MsG0280009207.01.T01 | MTR_7g055793 | 30.151 | 398 | 253 | 7 | 27 | 406 | 22 | 412 | 3.11e-53 | 185 |
| MsG0280009207.01.T01 | MTR_7g006900 | 31.383 | 376 | 240 | 7 | 11 | 379 | 10 | 374 | 4.59e-52 | 179 |
| MsG0280009207.01.T01 | MTR_7g055793 | 32.827 | 329 | 209 | 5 | 83 | 406 | 36 | 357 | 1.15e-51 | 180 |
| MsG0280009207.01.T01 | MTR_1g101040 | 30.529 | 416 | 266 | 11 | 1 | 406 | 1 | 403 | 1.23e-51 | 181 |
| MsG0280009207.01.T01 | MTR_0147s0030 | 27.338 | 417 | 269 | 6 | 11 | 406 | 16 | 419 | 7.86e-50 | 176 |
| MsG0280009207.01.T01 | MTR_1g101050 | 32.199 | 382 | 241 | 9 | 31 | 406 | 30 | 399 | 8.95e-49 | 173 |
| MsG0280009207.01.T01 | MTR_8g008530 | 28.954 | 411 | 274 | 9 | 8 | 406 | 3 | 407 | 9.91e-48 | 170 |
| MsG0280009207.01.T01 | MTR_3g093530 | 27.934 | 426 | 258 | 14 | 15 | 407 | 4 | 413 | 1.78e-47 | 170 |
| MsG0280009207.01.T01 | MTR_6g072490 | 31.688 | 385 | 240 | 10 | 31 | 406 | 31 | 401 | 3.94e-46 | 166 |
| MsG0280009207.01.T01 | MTR_0025s0110 | 31.633 | 392 | 242 | 11 | 31 | 406 | 33 | 414 | 8.31e-45 | 162 |
| MsG0280009207.01.T01 | MTR_8g469360 | 31.295 | 278 | 171 | 4 | 136 | 406 | 48 | 312 | 1.08e-39 | 147 |
| MsG0280009207.01.T01 | MTR_1g069200 | 29.238 | 407 | 261 | 11 | 10 | 406 | 11 | 400 | 1.36e-38 | 145 |
| MsG0280009207.01.T01 | MTR_2g061200 | 27.586 | 406 | 266 | 13 | 13 | 399 | 14 | 410 | 4.51e-38 | 144 |
| MsG0280009207.01.T01 | MTR_2g072410 | 57.447 | 94 | 37 | 1 | 1 | 94 | 1 | 91 | 7.32e-32 | 117 |
| MsG0280009207.01.T01 | MTR_5g009110 | 26.048 | 334 | 214 | 11 | 94 | 403 | 103 | 427 | 7.51e-25 | 106 |
| MsG0280009207.01.T01 | MTR_5g009110 | 26.048 | 334 | 214 | 11 | 94 | 403 | 103 | 427 | 2.50e-24 | 105 |
| MsG0280009207.01.T01 | MTR_5g009110 | 26.573 | 286 | 180 | 9 | 139 | 403 | 3 | 279 | 2.77e-22 | 97.1 |
| MsG0280009207.01.T01 | MTR_5g009110 | 26.573 | 286 | 180 | 9 | 139 | 403 | 3 | 279 | 1.29e-21 | 96.7 |
| MsG0280009207.01.T01 | MTR_3g079240 | 50.000 | 68 | 34 | 0 | 310 | 377 | 18 | 85 | 2.68e-21 | 88.6 |
| MsG0280009207.01.T01 | MTR_7g079440 | 23.565 | 331 | 218 | 9 | 93 | 403 | 217 | 532 | 2.28e-18 | 87.4 |
| MsG0280009207.01.T01 | MTR_7g079440 | 24.699 | 332 | 213 | 11 | 93 | 403 | 217 | 532 | 2.68e-18 | 87.4 |
| MsG0280009207.01.T01 | MTR_3g080580 | 24.702 | 336 | 193 | 12 | 102 | 402 | 80 | 390 | 8.77e-15 | 76.3 |
| MsG0280009207.01.T01 | MTR_1g062190 | 26.059 | 307 | 194 | 11 | 103 | 390 | 117 | 409 | 7.99e-14 | 73.6 |
| MsG0280009207.01.T01 | MTR_8g035760 | 23.353 | 334 | 213 | 13 | 87 | 392 | 64 | 382 | 4.84e-13 | 70.9 |
| MsG0280009207.01.T01 | MTR_5g094570 | 22.500 | 360 | 238 | 14 | 46 | 392 | 38 | 369 | 1.48e-12 | 69.3 |
| MsG0280009207.01.T01 | MTR_8g006450 | 23.462 | 260 | 168 | 7 | 154 | 407 | 133 | 367 | 3.84e-12 | 68.2 |
| MsG0280009207.01.T01 | MTR_7g075610 | 28.708 | 209 | 135 | 7 | 203 | 406 | 188 | 387 | 4.44e-12 | 68.2 |
| MsG0280009207.01.T01 | MTR_8g035680 | 23.030 | 330 | 220 | 12 | 87 | 392 | 64 | 383 | 1.64e-11 | 66.2 |
| MsG0280009207.01.T01 | MTR_5g094520 | 24.013 | 304 | 207 | 10 | 99 | 390 | 2 | 293 | 2.49e-11 | 65.5 |
| MsG0280009207.01.T01 | MTR_5g094520 | 23.885 | 314 | 205 | 12 | 94 | 390 | 102 | 398 | 2.61e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009207.01.T01 | AT3G14690 | 49.633 | 409 | 192 | 6 | 1 | 405 | 1 | 399 | 4.76e-147 | 427 |
| MsG0280009207.01.T01 | AT3G14690 | 49.633 | 409 | 192 | 6 | 1 | 405 | 36 | 434 | 1.71e-146 | 427 |
| MsG0280009207.01.T01 | AT3G14660 | 51.175 | 383 | 179 | 3 | 25 | 405 | 23 | 399 | 1.72e-143 | 418 |
| MsG0280009207.01.T01 | AT3G14650 | 49.347 | 383 | 186 | 3 | 25 | 405 | 23 | 399 | 8.00e-141 | 411 |
| MsG0280009207.01.T01 | AT3G14640 | 50.130 | 385 | 182 | 4 | 25 | 405 | 23 | 401 | 1.01e-137 | 404 |
| MsG0280009207.01.T01 | AT3G14640 | 50.130 | 385 | 182 | 4 | 25 | 405 | 45 | 423 | 3.40e-137 | 403 |
| MsG0280009207.01.T01 | AT3G14680 | 47.891 | 403 | 196 | 4 | 11 | 405 | 3 | 399 | 9.36e-137 | 401 |
| MsG0280009207.01.T01 | AT3G14630 | 50.260 | 384 | 183 | 4 | 24 | 405 | 18 | 395 | 5.34e-135 | 397 |
| MsG0280009207.01.T01 | AT3G14630 | 50.260 | 384 | 183 | 4 | 24 | 405 | 73 | 450 | 1.19e-134 | 397 |
| MsG0280009207.01.T01 | AT3G14610 | 48.579 | 387 | 190 | 5 | 22 | 405 | 19 | 399 | 1.96e-132 | 390 |
| MsG0280009207.01.T01 | AT3G14660 | 50.420 | 357 | 169 | 3 | 25 | 379 | 23 | 373 | 2.24e-132 | 385 |
| MsG0280009207.01.T01 | AT3G14620 | 49.096 | 387 | 185 | 4 | 22 | 405 | 24 | 401 | 5.13e-132 | 389 |
| MsG0280009207.01.T01 | AT2G26710 | 38.366 | 404 | 226 | 5 | 11 | 405 | 13 | 402 | 7.01e-96 | 296 |
| MsG0280009207.01.T01 | AT3G14660 | 50.209 | 239 | 112 | 2 | 168 | 405 | 21 | 253 | 1.25e-83 | 260 |
| MsG0280009207.01.T01 | AT1G17060 | 40.221 | 271 | 161 | 1 | 20 | 289 | 20 | 290 | 1.10e-74 | 235 |
| MsG0280009207.01.T01 | AT2G46960 | 34.937 | 395 | 231 | 10 | 23 | 405 | 23 | 403 | 1.62e-68 | 226 |
| MsG0280009207.01.T01 | AT4G27710 | 32.439 | 410 | 257 | 7 | 6 | 405 | 5 | 404 | 1.07e-64 | 216 |
| MsG0280009207.01.T01 | AT2G46950 | 33.588 | 393 | 236 | 11 | 23 | 405 | 80 | 457 | 4.91e-61 | 207 |
| MsG0280009207.01.T01 | AT1G75130 | 31.892 | 370 | 237 | 4 | 34 | 397 | 26 | 386 | 4.79e-60 | 203 |
| MsG0280009207.01.T01 | AT2G46960 | 38.644 | 295 | 160 | 7 | 121 | 405 | 4 | 287 | 4.59e-56 | 190 |
| MsG0280009207.01.T01 | AT2G46950 | 33.060 | 366 | 220 | 11 | 23 | 378 | 80 | 430 | 3.89e-55 | 188 |
| MsG0280009207.01.T01 | AT4G27710 | 31.129 | 363 | 231 | 6 | 6 | 359 | 5 | 357 | 8.12e-53 | 181 |
| MsG0280009207.01.T01 | AT5G52400 | 31.701 | 388 | 238 | 9 | 31 | 405 | 33 | 406 | 1.28e-51 | 181 |
| MsG0280009207.01.T01 | AT5G24910 | 29.257 | 417 | 269 | 12 | 7 | 405 | 11 | 419 | 1.65e-48 | 173 |
| MsG0280009207.01.T01 | AT5G38450 | 32.090 | 402 | 264 | 6 | 10 | 405 | 8 | 406 | 1.85e-48 | 172 |
| MsG0280009207.01.T01 | AT5G38450 | 30.809 | 383 | 256 | 6 | 10 | 386 | 8 | 387 | 4.57e-42 | 152 |
| MsG0280009207.01.T01 | AT5G24900 | 24.582 | 419 | 284 | 8 | 7 | 405 | 8 | 414 | 1.65e-41 | 154 |
| MsG0280009207.01.T01 | AT5G24910 | 28.040 | 403 | 264 | 12 | 7 | 391 | 11 | 405 | 7.34e-41 | 149 |
| MsG0280009207.01.T01 | AT1G67110 | 30.175 | 401 | 264 | 8 | 11 | 405 | 10 | 400 | 8.14e-41 | 151 |
| MsG0280009207.01.T01 | AT1G67110 | 29.380 | 371 | 246 | 8 | 11 | 375 | 10 | 370 | 2.17e-34 | 131 |
| MsG0280009207.01.T01 | AT5G24900 | 28.169 | 284 | 178 | 6 | 136 | 405 | 26 | 297 | 2.60e-34 | 132 |
| MsG0280009207.01.T01 | AT4G15110 | 25.472 | 318 | 210 | 9 | 94 | 390 | 110 | 421 | 3.08e-20 | 93.2 |
| MsG0280009207.01.T01 | AT1G31800 | 22.961 | 331 | 220 | 8 | 93 | 403 | 138 | 453 | 2.96e-17 | 84.3 |
| MsG0280009207.01.T01 | AT3G26150 | 22.571 | 319 | 212 | 11 | 95 | 390 | 62 | 368 | 7.07e-15 | 76.6 |
| MsG0280009207.01.T01 | AT1G24540 | 24.390 | 328 | 220 | 12 | 100 | 403 | 82 | 405 | 1.96e-13 | 72.4 |
| MsG0280009207.01.T01 | AT3G53130 | 24.359 | 312 | 193 | 9 | 103 | 390 | 117 | 409 | 1.88e-12 | 69.3 |
| MsG0280009207.01.T01 | AT2G44890 | 22.601 | 323 | 209 | 10 | 108 | 402 | 81 | 390 | 5.58e-11 | 64.7 |
| MsG0280009207.01.T01 | AT3G26180 | 19.385 | 325 | 231 | 10 | 87 | 390 | 54 | 368 | 6.63e-11 | 64.3 |
| MsG0280009207.01.T01 | AT2G44890 | 21.875 | 320 | 211 | 10 | 108 | 402 | 81 | 386 | 7.59e-11 | 64.3 |
| MsG0280009207.01.T01 | AT5G23190 | 24.179 | 335 | 207 | 14 | 101 | 402 | 103 | 423 | 9.13e-11 | 63.9 |
Find 91 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATCTTTAATCCCTTTA+TGG | 0.113773 | 2:-47679700 | MsG0280009207.01.T01:CDS |
| ACCATGAAATTTATAGAAAT+TGG | 0.192896 | 2:+47681052 | None:intergenic |
| AAGGAAGTATTAGAAGTATT+TGG | 0.239185 | 2:-47679264 | MsG0280009207.01.T01:CDS |
| AAAAGCTTCTCTATCTTCTT+TGG | 0.247771 | 2:+47680854 | None:intergenic |
| ACATGGAAACGTCAAGAATA+TGG | 0.269954 | 2:-47679418 | MsG0280009207.01.T01:CDS |
| ACCAATTTCTATAAATTTCA+TGG | 0.280052 | 2:-47681053 | MsG0280009207.01.T01:five_prime_UTR |
| CTTGCACGTTCTTGCCAATC+AGG | 0.311582 | 2:+47679288 | None:intergenic |
| TTTCGAGCAACGCCGGTTAC+AGG | 0.321099 | 2:+47679048 | None:intergenic |
| AACTTATTACACACTTAGTT+TGG | 0.322418 | 2:-47680998 | MsG0280009207.01.T01:five_prime_UTR |
| ATCAGAAAGATTCATGGGTT+TGG | 0.324623 | 2:+47680745 | None:intergenic |
| ATAAACTTATATTGAACCTT+TGG | 0.329498 | 2:+47680376 | None:intergenic |
| ACAAAGAAATGGAGTTATCT+TGG | 0.330921 | 2:-47680961 | MsG0280009207.01.T01:exon |
| TGCAGGTTATTCCATGTTGC+AGG | 0.334950 | 2:-47679366 | MsG0280009207.01.T01:CDS |
| GCGACTGAGAATGACTTATT+AGG | 0.348769 | 2:-47679477 | MsG0280009207.01.T01:CDS |
| TCCCCAAGCAAAAGTCTATA+AGG | 0.351347 | 2:+47680806 | None:intergenic |
| CTCTGTGGTTCGACTCTAGA+AGG | 0.351941 | 2:+47679451 | None:intergenic |
| GTTATTGCTCGTTCGTCATT+TGG | 0.354417 | 2:-47679797 | MsG0280009207.01.T01:CDS |
| CAAGAGGGAAAAGGCAATAA+AGG | 0.354862 | 2:-47679508 | MsG0280009207.01.T01:CDS |
| CATCACTGTGACATTTGGTT+TGG | 0.357652 | 2:-47680915 | MsG0280009207.01.T01:CDS |
| TAAACTTATATTGAACCTTT+GGG | 0.358595 | 2:+47680377 | None:intergenic |
| GCAATGATTTGATTAGCAAT+TGG | 0.370919 | 2:-47679892 | MsG0280009207.01.T01:CDS |
| GTTGATTATCCTTCTATGCT+TGG | 0.375241 | 2:+47680306 | None:intergenic |
| GTCTATAAGGATTCCCTTGA+AGG | 0.376966 | 2:+47680819 | None:intergenic |
| CTACTTCAGATTTGCTCGTT+TGG | 0.383358 | 2:-47679335 | MsG0280009207.01.T01:CDS |
| TGAACAGCGTGATGAATATA+AGG | 0.383655 | 2:+47680701 | None:intergenic |
| ATTCTCATCACTGTGACATT+TGG | 0.384177 | 2:-47680920 | MsG0280009207.01.T01:CDS |
| TAATAGTCTTACCTCCATAA+AGG | 0.389113 | 2:+47679686 | None:intergenic |
| AATACTTCTCTTATTTGCTC+AGG | 0.391689 | 2:+47680418 | None:intergenic |
| GAAGAAATGTTGTCTTCAAA+TGG | 0.397663 | 2:-47679869 | MsG0280009207.01.T01:CDS |
| AAAAGTGGACCAAGCATAGA+AGG | 0.404391 | 2:-47680315 | MsG0280009207.01.T01:CDS |
| CGTGGTCTTGTTAAACTAGA+AGG | 0.406220 | 2:-47680340 | MsG0280009207.01.T01:CDS |
| TTAAGAGAACAAGGCCTTCA+AGG | 0.413099 | 2:-47680833 | MsG0280009207.01.T01:CDS |
| TATTATTACAAACAAAGAAA+TGG | 0.415033 | 2:-47680972 | MsG0280009207.01.T01:exon |
| AGGTTGTACCCTCCTGTAAC+CGG | 0.415570 | 2:-47679060 | MsG0280009207.01.T01:CDS |
| CAATGATTTGATTAGCAATT+GGG | 0.427882 | 2:-47679891 | MsG0280009207.01.T01:CDS |
| ATGCATGGAGGGTATTGAAT+TGG | 0.428899 | 2:-47680889 | MsG0280009207.01.T01:CDS |
| TTCAAATGGATCATGTGAAA+TGG | 0.443407 | 2:-47679855 | MsG0280009207.01.T01:CDS |
| TTATTTAGTCCATCAAAGTC+TGG | 0.451786 | 2:+47679231 | None:intergenic |
| CAAAGAAATGGAGTTATCTT+GGG | 0.451816 | 2:-47680960 | MsG0280009207.01.T01:exon |
| TTTGGAAGTAGTTATGAAGA+AGG | 0.453849 | 2:-47679779 | MsG0280009207.01.T01:CDS |
| TGTTGAGTCGGTACCCTGAT+TGG | 0.454954 | 2:-47679302 | MsG0280009207.01.T01:CDS |
| AATAGTCTTACCTCCATAAA+GGG | 0.458091 | 2:+47679687 | None:intergenic |
| CATCACTTGTCAAGCTCTGA+AGG | 0.464834 | 2:+47679819 | None:intergenic |
| TGTCACAGTGATGAGAATTA+TGG | 0.466661 | 2:+47680925 | None:intergenic |
| TATAATTAACAAGAGGGAAA+AGG | 0.477167 | 2:-47679517 | MsG0280009207.01.T01:CDS |
| CATGGAAACGTCAAGAATAT+GGG | 0.488525 | 2:-47679417 | MsG0280009207.01.T01:CDS |
| AATATCATCAGAAAGATTCA+TGG | 0.491159 | 2:+47680739 | None:intergenic |
| AGTTGAGAATGATATAAACT+TGG | 0.497753 | 2:-47679025 | MsG0280009207.01.T01:CDS |
| GATCATGTGAAATGGACATA+TGG | 0.511186 | 2:-47679847 | MsG0280009207.01.T01:CDS |
| TAAGAGAACAAGGCCTTCAA+GGG | 0.523677 | 2:-47680832 | MsG0280009207.01.T01:CDS |
| CTTGTCAAGCTCTGAAGGGA+AGG | 0.535979 | 2:+47679824 | None:intergenic |
| CATTTGGTTTGGTATATGCA+TGG | 0.540473 | 2:-47680904 | MsG0280009207.01.T01:CDS |
| TTAAACTAGAAGGAGAAAAG+TGG | 0.541101 | 2:-47680330 | MsG0280009207.01.T01:CDS |
| CAAAACCTCATACAAAATCA+TGG | 0.541258 | 2:+47679083 | None:intergenic |
| GGACAATGGTATTGTTGAGT+CGG | 0.543861 | 2:-47679314 | MsG0280009207.01.T01:CDS |
| TGGTTTGGTATATGCATGGA+GGG | 0.544310 | 2:-47680900 | MsG0280009207.01.T01:CDS |
| AGATTTGCTCGTTTGGACAA+TGG | 0.547198 | 2:-47679328 | MsG0280009207.01.T01:CDS |
| CACAGAGAAATTAAAGAACA+TGG | 0.547423 | 2:-47679435 | MsG0280009207.01.T01:CDS |
| TTGCACGTTCTTGCCAATCA+GGG | 0.552230 | 2:+47679289 | None:intergenic |
| TTGAGTCTTGAAGAAGTAGT+GGG | 0.555679 | 2:-47679393 | MsG0280009207.01.T01:CDS |
| CATGTTCTTTAATTTCTCTG+TGG | 0.560672 | 2:+47679436 | None:intergenic |
| ATTGAGTCTTGAAGAAGTAG+TGG | 0.570980 | 2:-47679394 | MsG0280009207.01.T01:CDS |
| TTGGCAAGAACGTGCAAGGA+AGG | 0.573505 | 2:-47679283 | MsG0280009207.01.T01:CDS |
| ATCACTTGTCAAGCTCTGAA+GGG | 0.574294 | 2:+47679820 | None:intergenic |
| ATATCATCAGAAAGATTCAT+GGG | 0.576839 | 2:+47680740 | None:intergenic |
| TAGTCTCTTGCCCTGCAACA+TGG | 0.578650 | 2:+47679355 | None:intergenic |
| CGAGCAACGCCGGTTACAGG+AGG | 0.581472 | 2:+47679051 | None:intergenic |
| AGGGAAAAGGCAATAAAGGC+AGG | 0.581922 | 2:-47679504 | MsG0280009207.01.T01:CDS |
| TTTCAACTTCAAATAGAGCA+AGG | 0.582534 | 2:-47679746 | MsG0280009207.01.T01:CDS |
| TTAAGAATATAATTAACAAG+AGG | 0.582779 | 2:-47679524 | MsG0280009207.01.T01:CDS |
| TAAGAATATAATTAACAAGA+GGG | 0.586642 | 2:-47679523 | MsG0280009207.01.T01:CDS |
| GAGTCTTGAAGAAGTAGTGG+GGG | 0.586845 | 2:-47679391 | MsG0280009207.01.T01:CDS |
| AATCTTTAATCCCTTTATGG+AGG | 0.588764 | 2:-47679697 | MsG0280009207.01.T01:intron |
| CTGATTGGCAAGAACGTGCA+AGG | 0.596135 | 2:-47679287 | MsG0280009207.01.T01:CDS |
| AATCAACCCTGCGTTTCACA+TGG | 0.599045 | 2:-47680290 | MsG0280009207.01.T01:CDS |
| GGAGGGTATTGAATTGGATG+TGG | 0.603973 | 2:-47680883 | MsG0280009207.01.T01:CDS |
| GCAGGTTATTCCATGTTGCA+GGG | 0.604595 | 2:-47679365 | MsG0280009207.01.T01:CDS |
| ATCTTTCTATGATCAGCGGT+AGG | 0.607205 | 2:+47679579 | None:intergenic |
| TGAGTCTTGAAGAAGTAGTG+GGG | 0.608707 | 2:-47679392 | MsG0280009207.01.T01:CDS |
| GAGTAATTTATAACAAGACA+AGG | 0.608871 | 2:-47681100 | MsG0280009207.01.T01:five_prime_UTR |
| TTTATGAAGTTAATAACTCG+TGG | 0.610815 | 2:-47680358 | MsG0280009207.01.T01:CDS |
| TTGGTTTGGTATATGCATGG+AGG | 0.626761 | 2:-47680901 | MsG0280009207.01.T01:CDS |
| TTTGGTTTGGAATGAAACCA+TGG | 0.628029 | 2:-47680456 | MsG0280009207.01.T01:CDS |
| TTGGTTTGGAATGAAACCAT+GGG | 0.631299 | 2:-47680455 | MsG0280009207.01.T01:CDS |
| ATTTATCTTTCTATGATCAG+CGG | 0.641369 | 2:+47679575 | None:intergenic |
| GGTTCATTGAGAATCACCCA+TGG | 0.655158 | 2:+47680439 | None:intergenic |
| CATCACGCTGTTCAAACACA+CGG | 0.662260 | 2:-47680692 | MsG0280009207.01.T01:intron |
| GAGCAACGCCGGTTACAGGA+GGG | 0.662897 | 2:+47679052 | None:intergenic |
| TGAATATAAGGAGCAACACG+TGG | 0.676642 | 2:+47680713 | None:intergenic |
| CAAGATGTCTGAGTTCCCAA+AGG | 0.678396 | 2:-47680392 | MsG0280009207.01.T01:CDS |
| AGTAATTTATAACAAGACAA+GGG | 0.684207 | 2:-47681099 | MsG0280009207.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTGCATTTTTATA+TGG | + | Chr2:47679099-47679118 | None:intergenic | 10.0% |
| !! | TAAGAATATAATTAACAAGA+GGG | - | Chr2:47680800-47680819 | MsG0280009207.01.T01:CDS | 15.0% |
| !! | TATTATTACAAACAAAGAAA+TGG | - | Chr2:47679351-47679370 | MsG0280009207.01.T01:CDS | 15.0% |
| !! | TTAAGAATATAATTAACAAG+AGG | - | Chr2:47680799-47680818 | MsG0280009207.01.T01:CDS | 15.0% |
| !!! | TAAATTTGTTTTGTTTTAGA+TGG | - | Chr2:47681217-47681236 | MsG0280009207.01.T01:five_prime_UTR | 15.0% |
| !! | ACCAATTTCTATAAATTTCA+TGG | - | Chr2:47679270-47679289 | MsG0280009207.01.T01:CDS | 20.0% |
| !! | ACCATGAAATTTATAGAAAT+TGG | + | Chr2:47679274-47679293 | None:intergenic | 20.0% |
| !! | AGTAATTTATAACAAGACAA+GGG | - | Chr2:47679224-47679243 | MsG0280009207.01.T01:CDS | 20.0% |
| !! | ATAAACTTATATTGAACCTT+TGG | + | Chr2:47679950-47679969 | None:intergenic | 20.0% |
| !! | TAAACTTATATTGAACCTTT+GGG | + | Chr2:47679949-47679968 | None:intergenic | 20.0% |
| !!! | AAAAAGTCTTTTATTTGGTT+TGG | - | Chr2:47679854-47679873 | MsG0280009207.01.T01:CDS | 20.0% |
| !!! | TAAGTGTGTAATAAGTTTTT+CGG | + | Chr2:47679322-47679341 | None:intergenic | 20.0% |
| ! | AACTTATTACACACTTAGTT+TGG | - | Chr2:47679325-47679344 | MsG0280009207.01.T01:CDS | 25.0% |
| ! | AATATCATCAGAAAGATTCA+TGG | + | Chr2:47679587-47679606 | None:intergenic | 25.0% |
| ! | AGTTGAGAATGATATAAACT+TGG | - | Chr2:47681298-47681317 | MsG0280009207.01.T01:five_prime_UTR | 25.0% |
| ! | ATATCATCAGAAAGATTCAT+GGG | + | Chr2:47679586-47679605 | None:intergenic | 25.0% |
| ! | ATTTATCTTTCTATGATCAG+CGG | + | Chr2:47680751-47680770 | None:intergenic | 25.0% |
| ! | CAATGATTTGATTAGCAATT+GGG | - | Chr2:47680432-47680451 | MsG0280009207.01.T01:CDS | 25.0% |
| ! | GAGTAATTTATAACAAGACA+AGG | - | Chr2:47679223-47679242 | MsG0280009207.01.T01:CDS | 25.0% |
| ! | TATAATTAACAAGAGGGAAA+AGG | - | Chr2:47680806-47680825 | MsG0280009207.01.T01:CDS | 25.0% |
| ! | TGAAATCTTTAATCCCTTTA+TGG | - | Chr2:47680623-47680642 | MsG0280009207.01.T01:intron | 25.0% |
| ! | TTTATGAAGTTAATAACTCG+TGG | - | Chr2:47679965-47679984 | MsG0280009207.01.T01:intron | 25.0% |
| !! | TGACTATTCTTTTTACTTGT+AGG | - | Chr2:47680715-47680734 | MsG0280009207.01.T01:CDS | 25.0% |
| !! | TTCTTAGGTAGAACAAATTT+TGG | - | Chr2:47680199-47680218 | MsG0280009207.01.T01:intron | 25.0% |
| !!! | AAGGAAGTATTAGAAGTATT+TGG | - | Chr2:47681059-47681078 | MsG0280009207.01.T01:five_prime_UTR | 25.0% |
| !!! | ACCAAAAGTATTAAGACTAT+TGG | + | Chr2:47681193-47681212 | None:intergenic | 25.0% |
| !!! | TCCAATAGTCTTAATACTTT+TGG | - | Chr2:47681189-47681208 | MsG0280009207.01.T01:five_prime_UTR | 25.0% |
| AAAAGCTTCTCTATCTTCTT+TGG | + | Chr2:47679472-47679491 | None:intergenic | 30.0% | |
| AATCTTTAATCCCTTTATGG+AGG | - | Chr2:47680626-47680645 | MsG0280009207.01.T01:intron | 30.0% | |
| AATGAAAAACCAGACTTTGA+TGG | - | Chr2:47681083-47681102 | MsG0280009207.01.T01:five_prime_UTR | 30.0% | |
| ACAAAGAAATGGAGTTATCT+TGG | - | Chr2:47679362-47679381 | MsG0280009207.01.T01:CDS | 30.0% | |
| ACTAAAGACGAATTGTTCAA+GGG | - | Chr2:47680163-47680182 | MsG0280009207.01.T01:intron | 30.0% | |
| CAAAACCTCATACAAAATCA+TGG | + | Chr2:47681243-47681262 | None:intergenic | 30.0% | |
| CAAAGAAATGGAGTTATCTT+GGG | - | Chr2:47679363-47679382 | MsG0280009207.01.T01:CDS | 30.0% | |
| CACAGAGAAATTAAAGAACA+TGG | - | Chr2:47680888-47680907 | MsG0280009207.01.T01:CDS | 30.0% | |
| GAAGAAATGTTGTCTTCAAA+TGG | - | Chr2:47680454-47680473 | MsG0280009207.01.T01:CDS | 30.0% | |
| GCAATGATTTGATTAGCAAT+TGG | - | Chr2:47680431-47680450 | MsG0280009207.01.T01:CDS | 30.0% | |
| GTTTCACATGGAAAAATTGA+AGG | - | Chr2:47680045-47680064 | MsG0280009207.01.T01:intron | 30.0% | |
| TACTAAAGACGAATTGTTCA+AGG | - | Chr2:47680162-47680181 | MsG0280009207.01.T01:intron | 30.0% | |
| TTAAACTAGAAGGAGAAAAG+TGG | - | Chr2:47679993-47680012 | MsG0280009207.01.T01:intron | 30.0% | |
| TTAGAGAAGGAAAAAAGAAC+TGG | + | Chr2:47680673-47680692 | None:intergenic | 30.0% | |
| TTATTTAGTCCATCAAAGTC+TGG | + | Chr2:47681095-47681114 | None:intergenic | 30.0% | |
| TTCAAATGGATCATGTGAAA+TGG | - | Chr2:47680468-47680487 | MsG0280009207.01.T01:CDS | 30.0% | |
| TTTCAACTTCAAATAGAGCA+AGG | - | Chr2:47680577-47680596 | MsG0280009207.01.T01:intron | 30.0% | |
| TTTGGAAGTAGTTATGAAGA+AGG | - | Chr2:47680544-47680563 | MsG0280009207.01.T01:intron | 30.0% | |
| ! | AATACTTCTCTTATTTGCTC+AGG | + | Chr2:47679908-47679927 | None:intergenic | 30.0% |
| ! | AATAGTCTTACCTCCATAAA+GGG | + | Chr2:47680639-47680658 | None:intergenic | 30.0% |
| ! | AATCCTTATAGACTTTTGCT+TGG | - | Chr2:47679514-47679533 | MsG0280009207.01.T01:CDS | 30.0% |
| ! | ATCCTTATAGACTTTTGCTT+GGG | - | Chr2:47679515-47679534 | MsG0280009207.01.T01:CDS | 30.0% |
| ! | ATTGTAGAAGTGTAATTTGC+AGG | + | Chr2:47680328-47680347 | None:intergenic | 30.0% |
| ! | CAGGGAAAAAGTCTTTTATT+TGG | - | Chr2:47679849-47679868 | MsG0280009207.01.T01:CDS | 30.0% |
| ! | CATGTTCTTTAATTTCTCTG+TGG | + | Chr2:47680890-47680909 | None:intergenic | 30.0% |
| ! | TAATAGTCTTACCTCCATAA+AGG | + | Chr2:47680640-47680659 | None:intergenic | 30.0% |
| ! | TGATTTTGTATGAGGTTTTG+AGG | - | Chr2:47681243-47681262 | MsG0280009207.01.T01:intron | 30.0% |
| ! | TTGTAGAAGTGTAATTTGCA+GGG | + | Chr2:47680327-47680346 | None:intergenic | 30.0% |
| !! | AATGTTGGTGTCATAATCTA+CGG | + | Chr2:47680400-47680419 | None:intergenic | 30.0% |
| ACATGGAAACGTCAAGAATA+TGG | - | Chr2:47680905-47680924 | MsG0280009207.01.T01:CDS | 35.0% | |
| ACCATAACATGACTTCAATG+AGG | + | Chr2:47679793-47679812 | None:intergenic | 35.0% | |
| ACCTCATTGAAGTCATGTTA+TGG | - | Chr2:47679789-47679808 | MsG0280009207.01.T01:CDS | 35.0% | |
| AGCATCTTAGTGATTAGAGA+AGG | + | Chr2:47680686-47680705 | None:intergenic | 35.0% | |
| ATCAGAAAGATTCATGGGTT+TGG | + | Chr2:47679581-47679600 | None:intergenic | 35.0% | |
| ATTCTCATCACTGTGACATT+TGG | - | Chr2:47679403-47679422 | MsG0280009207.01.T01:CDS | 35.0% | |
| ATTGAGTCTTGAAGAAGTAG+TGG | - | Chr2:47680929-47680948 | MsG0280009207.01.T01:CDS | 35.0% | |
| CATGGAAACGTCAAGAATAT+GGG | - | Chr2:47680906-47680925 | MsG0280009207.01.T01:CDS | 35.0% | |
| GATCATGTGAAATGGACATA+TGG | - | Chr2:47680476-47680495 | MsG0280009207.01.T01:intron | 35.0% | |
| GTTGATTATCCTTCTATGCT+TGG | + | Chr2:47680020-47680039 | None:intergenic | 35.0% | |
| TGAACAGCGTGATGAATATA+AGG | + | Chr2:47679625-47679644 | None:intergenic | 35.0% | |
| TGTCACAGTGATGAGAATTA+TGG | + | Chr2:47679401-47679420 | None:intergenic | 35.0% | |
| TTGAGTCTTGAAGAAGTAGT+GGG | - | Chr2:47680930-47680949 | MsG0280009207.01.T01:CDS | 35.0% | |
| ! | AATTTTTCCATGTGAAACGC+AGG | + | Chr2:47680043-47680062 | None:intergenic | 35.0% |
| ! | ATTTTTCCATGTGAAACGCA+GGG | + | Chr2:47680042-47680061 | None:intergenic | 35.0% |
| ! | TCCTTATAGACTTTTGCTTG+GGG | - | Chr2:47679516-47679535 | MsG0280009207.01.T01:CDS | 35.0% |
| !! | ACTTTTTCCCTGCATACAAT+GGG | + | Chr2:47679841-47679860 | None:intergenic | 35.0% |
| !! | AGGTAGAACAAATTTTGGTC+AGG | - | Chr2:47680204-47680223 | MsG0280009207.01.T01:intron | 35.0% |
| !! | CATTTGGTTTGGTATATGCA+TGG | - | Chr2:47679419-47679438 | MsG0280009207.01.T01:CDS | 35.0% |
| !! | GAGAAGCTTTTAAGAGAACA+AGG | - | Chr2:47679481-47679500 | MsG0280009207.01.T01:CDS | 35.0% |
| !! | TTGCAGCTTTTCAAGAATGT+TGG | + | Chr2:47680415-47680434 | None:intergenic | 35.0% |
| !! | TTGGTTTGGAATGAAACCAT+GGG | - | Chr2:47679868-47679887 | MsG0280009207.01.T01:CDS | 35.0% |
| !! | TTTGGTTTGGAATGAAACCA+TGG | - | Chr2:47679867-47679886 | MsG0280009207.01.T01:CDS | 35.0% |
| AAAAGTGGACCAAGCATAGA+AGG | - | Chr2:47680008-47680027 | MsG0280009207.01.T01:intron | 40.0% | |
| ACGAAGCAATTGAACTTACG+TGG | - | Chr2:47680128-47680147 | MsG0280009207.01.T01:intron | 40.0% | |
| ATATTCCACCCATTGTATGC+AGG | - | Chr2:47679830-47679849 | MsG0280009207.01.T01:CDS | 40.0% | |
| ATCTTTCTATGATCAGCGGT+AGG | + | Chr2:47680747-47680766 | None:intergenic | 40.0% | |
| CAAGAGGGAAAAGGCAATAA+AGG | - | Chr2:47680815-47680834 | MsG0280009207.01.T01:CDS | 40.0% | |
| CATCACTGTGACATTTGGTT+TGG | - | Chr2:47679408-47679427 | MsG0280009207.01.T01:CDS | 40.0% | |
| GCGACTGAGAATGACTTATT+AGG | - | Chr2:47680846-47680865 | MsG0280009207.01.T01:CDS | 40.0% | |
| GGACAATGGTATTGTTGAGT+CGG | - | Chr2:47681009-47681028 | MsG0280009207.01.T01:five_prime_UTR | 40.0% | |
| GTCTATAAGGATTCCCTTGA+AGG | + | Chr2:47679507-47679526 | None:intergenic | 40.0% | |
| GTTATTGCTCGTTCGTCATT+TGG | - | Chr2:47680526-47680545 | MsG0280009207.01.T01:intron | 40.0% | |
| TAAGAGAACAAGGCCTTCAA+GGG | - | Chr2:47679491-47679510 | MsG0280009207.01.T01:CDS | 40.0% | |
| TATTCCACCCATTGTATGCA+GGG | - | Chr2:47679831-47679850 | MsG0280009207.01.T01:CDS | 40.0% | |
| TCAATGAGGTTGCCACTAAT+CGG | + | Chr2:47679779-47679798 | None:intergenic | 40.0% | |
| TCCCCAAGCAAAAGTCTATA+AGG | + | Chr2:47679520-47679539 | None:intergenic | 40.0% | |
| TGAATATAAGGAGCAACACG+TGG | + | Chr2:47679613-47679632 | None:intergenic | 40.0% | |
| TGAGTCTTGAAGAAGTAGTG+GGG | - | Chr2:47680931-47680950 | MsG0280009207.01.T01:CDS | 40.0% | |
| TTAAGAGAACAAGGCCTTCA+AGG | - | Chr2:47679490-47679509 | MsG0280009207.01.T01:CDS | 40.0% | |
| TTCTACCTAAGAATCGAACG+CGG | + | Chr2:47680192-47680211 | None:intergenic | 40.0% | |
| ! | AGATTTGCTCGTTTGGACAA+TGG | - | Chr2:47680995-47681014 | MsG0280009207.01.T01:five_prime_UTR | 40.0% |
| ! | CTACTTCAGATTTGCTCGTT+TGG | - | Chr2:47680988-47681007 | MsG0280009207.01.T01:five_prime_UTR | 40.0% |
| ! | GATGGCCATGATTTTGTATG+AGG | - | Chr2:47681235-47681254 | MsG0280009207.01.T01:five_prime_UTR | 40.0% |
| !! | ATCACTTGTCAAGCTCTGAA+GGG | + | Chr2:47680506-47680525 | None:intergenic | 40.0% |
| !! | ATGCATGGAGGGTATTGAAT+TGG | - | Chr2:47679434-47679453 | MsG0280009207.01.T01:CDS | 40.0% |
| !! | CGTGGTCTTGTTAAACTAGA+AGG | - | Chr2:47679983-47680002 | MsG0280009207.01.T01:intron | 40.0% |
| !! | GACTTTTTCCCTGCATACAA+TGG | + | Chr2:47679842-47679861 | None:intergenic | 40.0% |
| !! | TGGTTTGGTATATGCATGGA+GGG | - | Chr2:47679423-47679442 | MsG0280009207.01.T01:CDS | 40.0% |
| !! | TTGGTTTGGTATATGCATGG+AGG | - | Chr2:47679422-47679441 | MsG0280009207.01.T01:CDS | 40.0% |
| !!! | TATTTTTGGCATGAACCCTC+CGG | + | Chr2:47680284-47680303 | None:intergenic | 40.0% |
| !!! | TTATTTTTGCACTGCTCGTG+TGG | - | Chr2:47680086-47680105 | MsG0280009207.01.T01:intron | 40.0% |
| AATCAACCCTGCGTTTCACA+TGG | - | Chr2:47680033-47680052 | MsG0280009207.01.T01:intron | 45.0% | |
| AGGGAAAAGGCAATAAAGGC+AGG | - | Chr2:47680819-47680838 | MsG0280009207.01.T01:CDS | 45.0% | |
| CAACATCTTGAGCCGATTAG+TGG | - | Chr2:47679764-47679783 | MsG0280009207.01.T01:CDS | 45.0% | |
| CAAGATGTCTGAGTTCCCAA+AGG | - | Chr2:47679931-47679950 | MsG0280009207.01.T01:intron | 45.0% | |
| CATCACGCTGTTCAAACACA+CGG | - | Chr2:47679631-47679650 | MsG0280009207.01.T01:intron | 45.0% | |
| GAGTCTTGAAGAAGTAGTGG+GGG | - | Chr2:47680932-47680951 | MsG0280009207.01.T01:CDS | 45.0% | |
| GCAGGTTATTCCATGTTGCA+GGG | - | Chr2:47680958-47680977 | MsG0280009207.01.T01:exon | 45.0% | |
| GGTTCATTGAGAATCACCCA+TGG | + | Chr2:47679887-47679906 | None:intergenic | 45.0% | |
| GTCAGGTTATCCTTATCTCG+TGG | - | Chr2:47680221-47680240 | MsG0280009207.01.T01:intron | 45.0% | |
| TCTACCTAAGAATCGAACGC+GGG | + | Chr2:47680191-47680210 | None:intergenic | 45.0% | |
| TGCAGGTTATTCCATGTTGC+AGG | - | Chr2:47680957-47680976 | MsG0280009207.01.T01:exon | 45.0% | |
| TTGCACGTTCTTGCCAATCA+GGG | + | Chr2:47681037-47681056 | None:intergenic | 45.0% | |
| ! | ACTTTTGCTTGGGGATGCAA+AGG | - | Chr2:47679525-47679544 | MsG0280009207.01.T01:CDS | 45.0% |
| ! | CATCACTTGTCAAGCTCTGA+AGG | + | Chr2:47680507-47680526 | None:intergenic | 45.0% |
| ! | TTTTCCCTGCATACAATGGG+TGG | + | Chr2:47679838-47679857 | None:intergenic | 45.0% |
| !! | GGAGGGTATTGAATTGGATG+TGG | - | Chr2:47679440-47679459 | MsG0280009207.01.T01:CDS | 45.0% |
| !!! | AAAACAAATTATTATATTTT+TGG | + | Chr2:47680298-47680317 | None:intergenic | 5.0% |
| !!! | AATAATTAATACTTTTTTTT+AGG | - | Chr2:47679141-47679160 | MsG0280009207.01.T01:intron | 5.0% |
| !!! | ATAATTAATACTTTTTTTTA+GGG | - | Chr2:47679142-47679161 | MsG0280009207.01.T01:intron | 5.0% |
| !!! | ATTATTTTTTAAATGAAAAA+AGG | - | Chr2:47679112-47679131 | MsG0280009207.01.T01:intron | 5.0% |
| AGGAGTTCAGCCACGAGATA+AGG | + | Chr2:47680234-47680253 | None:intergenic | 50.0% | |
| AGGTTGTACCCTCCTGTAAC+CGG | - | Chr2:47681263-47681282 | MsG0280009207.01.T01:intron | 50.0% | |
| CTCTGTGGTTCGACTCTAGA+AGG | + | Chr2:47680875-47680894 | None:intergenic | 50.0% | |
| CTGATTGGCAAGAACGTGCA+AGG | - | Chr2:47681036-47681055 | MsG0280009207.01.T01:five_prime_UTR | 50.0% | |
| CTTGCACGTTCTTGCCAATC+AGG | + | Chr2:47681038-47681057 | None:intergenic | 50.0% | |
| TAGTCTCTTGCCCTGCAACA+TGG | + | Chr2:47680971-47680990 | None:intergenic | 50.0% | |
| TGTTGAGTCGGTACCCTGAT+TGG | - | Chr2:47681021-47681040 | MsG0280009207.01.T01:five_prime_UTR | 50.0% | |
| TTGGCAAGAACGTGCAAGGA+AGG | - | Chr2:47681040-47681059 | MsG0280009207.01.T01:five_prime_UTR | 50.0% | |
| ! | AAGAAGTAGTGGGGGAATGC+AGG | - | Chr2:47680940-47680959 | MsG0280009207.01.T01:CDS | 50.0% |
| !! | CTCAACTTTTCGAGCAACGC+CGG | + | Chr2:47681285-47681304 | None:intergenic | 50.0% |
| !! | CTTGTCAAGCTCTGAAGGGA+AGG | + | Chr2:47680502-47680521 | None:intergenic | 50.0% |
| ATTACCAGAGCCCTTTCCCC+TGG | - | Chr2:47680255-47680274 | MsG0280009207.01.T01:intron | 55.0% | |
| TTACCAGAGCCCTTTCCCCT+GGG | - | Chr2:47680256-47680275 | MsG0280009207.01.T01:intron | 55.0% | |
| ! | GGGAAAGGGCTCTGGTAATC+AGG | + | Chr2:47680254-47680273 | None:intergenic | 55.0% |
| ! | TTTCGAGCAACGCCGGTTAC+AGG | + | Chr2:47681278-47681297 | None:intergenic | 55.0% |
| ATGAACCCTCCGGTTCCCAG+GGG | + | Chr2:47680274-47680293 | None:intergenic | 60.0% | |
| CATGAACCCTCCGGTTCCCA+GGG | + | Chr2:47680275-47680294 | None:intergenic | 60.0% | |
| GGAGCCCGCGTTCGATTCTT+AGG | - | Chr2:47680184-47680203 | MsG0280009207.01.T01:intron | 60.0% | |
| ! | GAGCAACGCCGGTTACAGGA+GGG | + | Chr2:47681274-47681293 | None:intergenic | 60.0% |
| CCTCCGGTTCCCAGGGGAAA+GGG | + | Chr2:47680268-47680287 | None:intergenic | 65.0% | |
| CCTTTCCCCTGGGAACCGGA+GGG | - | Chr2:47680266-47680285 | MsG0280009207.01.T01:intron | 65.0% | |
| GAGCCCTTTCCCCTGGGAAC+CGG | - | Chr2:47680262-47680281 | MsG0280009207.01.T01:intron | 65.0% | |
| GCATGAACCCTCCGGTTCCC+AGG | + | Chr2:47680276-47680295 | None:intergenic | 65.0% | |
| GTTCCCAGGGGAAAGGGCTC+TGG | + | Chr2:47680262-47680281 | None:intergenic | 65.0% | |
| ! | CGAGCAACGCCGGTTACAGG+AGG | + | Chr2:47681275-47681294 | None:intergenic | 65.0% |
| CCCTCCGGTTCCCAGGGGAA+AGG | + | Chr2:47680269-47680288 | None:intergenic | 70.0% | |
| CCCTTTCCCCTGGGAACCGG+AGG | - | Chr2:47680265-47680284 | MsG0280009207.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 47679017 | 47681328 | 47679017 | ID=MsG0280009207.01;Name=MsG0280009207.01 |
| Chr2 | mRNA | 47679017 | 47681328 | 47679017 | ID=MsG0280009207.01.T01;Parent=MsG0280009207.01;Name=MsG0280009207.01.T01;_AED=0.13;_eAED=0.13;_QI=329|1|1|1|0.66|0.42|7|0|407 |
| Chr2 | exon | 47681284 | 47681328 | 47681284 | ID=MsG0280009207.01.T01:exon:15693;Parent=MsG0280009207.01.T01 |
| Chr2 | exon | 47680693 | 47681259 | 47680693 | ID=MsG0280009207.01.T01:exon:15694;Parent=MsG0280009207.01.T01 |
| Chr2 | exon | 47680279 | 47680493 | 47680279 | ID=MsG0280009207.01.T01:exon:15695;Parent=MsG0280009207.01.T01 |
| Chr2 | exon | 47679698 | 47679942 | 47679698 | ID=MsG0280009207.01.T01:exon:15696;Parent=MsG0280009207.01.T01 |
| Chr2 | exon | 47679221 | 47679608 | 47679221 | ID=MsG0280009207.01.T01:exon:15697;Parent=MsG0280009207.01.T01 |
| Chr2 | exon | 47679017 | 47679109 | 47679017 | ID=MsG0280009207.01.T01:exon:15698;Parent=MsG0280009207.01.T01 |
| Chr2 | five_prime_UTR | 47681284 | 47681328 | 47681284 | ID=MsG0280009207.01.T01:five_prime_utr;Parent=MsG0280009207.01.T01 |
| Chr2 | five_prime_UTR | 47680976 | 47681259 | 47680976 | ID=MsG0280009207.01.T01:five_prime_utr;Parent=MsG0280009207.01.T01 |
| Chr2 | CDS | 47680693 | 47680975 | 47680693 | ID=MsG0280009207.01.T01:cds;Parent=MsG0280009207.01.T01 |
| Chr2 | CDS | 47680279 | 47680493 | 47680279 | ID=MsG0280009207.01.T01:cds;Parent=MsG0280009207.01.T01 |
| Chr2 | CDS | 47679698 | 47679942 | 47679698 | ID=MsG0280009207.01.T01:cds;Parent=MsG0280009207.01.T01 |
| Chr2 | CDS | 47679221 | 47679608 | 47679221 | ID=MsG0280009207.01.T01:cds;Parent=MsG0280009207.01.T01 |
| Chr2 | CDS | 47679017 | 47679109 | 47679017 | ID=MsG0280009207.01.T01:cds;Parent=MsG0280009207.01.T01 |
| Gene Sequence |
| Protein sequence |
