AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007260.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007260.01.T01 MTR_2g023680 98.601 143 2 0 65 207 378 520 1.98e-100 300
MsG0280007260.01.T01 MTR_2g023680 68.750 80 25 0 1 80 168 247 2.03e-30 117
MsG0280007260.01.T01 MTR_2g072420 67.143 140 46 0 67 206 3 142 2.05e-72 216
MsG0280007260.01.T01 MTR_2g072260 71.631 141 40 0 67 207 373 513 1.18e-71 226
MsG0280007260.01.T01 MTR_2g072260 60.000 80 32 0 1 80 161 240 5.02e-25 102
MsG0280007260.01.T01 MTR_2g055470 69.231 143 44 0 65 207 378 520 3.25e-71 225
MsG0280007260.01.T01 MTR_2g055470 50.000 80 40 0 1 80 168 247 1.42e-21 92.0
MsG0280007260.01.T01 MTR_2g055430 70.922 141 41 0 67 207 380 520 4.43e-71 224
MsG0280007260.01.T01 MTR_2g055430 53.750 80 37 0 1 80 168 247 3.90e-23 96.7
MsG0280007260.01.T01 MTR_2g072250 69.504 141 43 0 67 207 376 516 6.62e-71 224
MsG0280007260.01.T01 MTR_2g072250 58.750 80 33 0 1 80 164 243 3.36e-24 99.8
MsG0280007260.01.T01 MTR_2g072310 69.286 140 43 0 67 206 213 352 7.29e-71 219
MsG0280007260.01.T01 MTR_2g072310 53.750 80 37 0 1 80 1 80 5.57e-23 94.7
MsG0280007260.01.T01 MTR_2g072400 68.085 141 45 0 67 207 378 518 1.35e-69 221
MsG0280007260.01.T01 MTR_2g072400 52.500 80 38 0 1 80 166 245 2.83e-21 91.3
MsG0280007260.01.T01 MTR_2g072380 65.714 140 48 0 67 206 213 352 3.46e-68 213
MsG0280007260.01.T01 MTR_2g072380 53.750 80 37 0 1 80 1 80 3.84e-22 92.8
MsG0280007260.01.T01 MTR_2g072340 66.429 140 47 0 67 206 378 517 4.49e-68 217
MsG0280007260.01.T01 MTR_2g072340 53.846 78 36 0 3 80 168 245 7.97e-21 90.1
MsG0280007260.01.T01 MTR_5g095230 67.376 141 46 0 67 207 376 516 6.82e-67 214
MsG0280007260.01.T01 MTR_5g095230 53.535 99 38 2 1 91 164 262 1.54e-23 97.8
MsG0280007260.01.T01 MTR_2g072380 65.714 140 48 0 67 206 353 492 1.98e-66 212
MsG0280007260.01.T01 MTR_2g072380 53.750 80 37 0 1 80 141 220 1.17e-21 92.4
MsG0280007260.01.T01 MTR_8g042020 60.432 139 55 0 67 205 385 523 7.02e-59 193
MsG0280007260.01.T01 MTR_8g042020 54.167 72 33 0 1 72 175 246 4.91e-19 84.7
MsG0280007260.01.T01 MTR_8g042040 60.432 139 55 0 67 205 369 507 1.09e-58 192
MsG0280007260.01.T01 MTR_8g042040 66.667 57 19 0 1 57 175 231 1.87e-19 86.3
MsG0280007260.01.T01 MTR_2g072270 61.151 139 54 0 67 205 385 523 1.74e-58 192
MsG0280007260.01.T01 MTR_2g072270 41.441 111 56 4 1 109 175 278 3.34e-13 68.2
MsG0280007260.01.T01 MTR_8g042060 58.993 139 57 0 67 205 350 488 3.55e-58 190
MsG0280007260.01.T01 MTR_8g042060 58.993 139 57 0 67 205 386 524 7.03e-58 190
MsG0280007260.01.T01 MTR_8g042060 63.158 57 21 0 1 57 175 231 1.98e-18 83.2
MsG0280007260.01.T01 MTR_4g031820 56.835 139 60 0 67 205 368 506 7.80e-56 184
MsG0280007260.01.T01 MTR_4g031820 34.343 99 63 2 1 97 179 277 5.82e-13 67.4
MsG0280007260.01.T01 MTR_4g031820 56.835 139 60 0 67 205 390 528 1.69e-55 184
MsG0280007260.01.T01 MTR_4g031820 34.343 99 63 2 1 97 179 277 6.26e-13 67.0
MsG0280007260.01.T01 MTR_8g042000 61.871 139 53 0 67 205 386 524 1.39e-54 182
MsG0280007260.01.T01 MTR_8g042000 66.667 57 19 0 1 57 175 231 4.69e-19 85.1
MsG0280007260.01.T01 MTR_2g072330 43.500 200 69 5 7 206 149 304 5.83e-44 149
MsG0280007260.01.T01 MTR_2g072330 39.496 119 69 1 1 119 50 165 2.38e-21 89.7
MsG0280007260.01.T01 MTR_2g072330 43.000 200 70 4 7 206 260 415 8.87e-43 148
MsG0280007260.01.T01 MTR_2g072330 50.000 80 40 0 1 80 161 240 1.03e-20 89.4
MsG0280007260.01.T01 MTR_7g098550 44.681 141 74 1 65 205 361 497 1.13e-41 147
MsG0280007260.01.T01 MTR_7g098550 40.506 79 47 0 2 80 168 246 1.74e-12 65.9
MsG0280007260.01.T01 MTR_7g098550 44.604 139 73 1 67 205 371 505 1.18e-41 147
MsG0280007260.01.T01 MTR_7g098550 40.506 79 47 0 2 80 168 246 1.72e-12 65.9
MsG0280007260.01.T01 MTR_8g008530 43.262 141 80 0 65 205 379 519 1.31e-38 139
MsG0280007260.01.T01 MTR_4g113650 38.095 147 91 0 59 205 373 519 4.17e-37 135
MsG0280007260.01.T01 MTR_7g006900 38.636 176 101 3 32 207 306 474 2.07e-36 132
MsG0280007260.01.T01 MTR_1g085680 42.857 140 80 0 67 206 378 517 2.53e-36 133
MsG0280007260.01.T01 MTR_6g072490 39.007 141 86 0 63 203 371 511 2.95e-36 133
MsG0280007260.01.T01 MTR_3g093530 42.754 138 79 0 67 204 386 523 6.78e-36 132
MsG0280007260.01.T01 MTR_1g022040 39.007 141 82 1 65 205 367 503 7.51e-36 131
MsG0280007260.01.T01 MTR_6g017325 43.571 140 73 3 65 203 371 505 1.24e-35 131
MsG0280007260.01.T01 MTR_0147s0030 42.553 141 81 0 65 205 391 531 1.58e-35 131
MsG0280007260.01.T01 MTR_1g101040 37.589 141 88 0 63 203 373 513 2.33e-35 130
MsG0280007260.01.T01 MTR_3g062900 47.500 120 59 2 90 205 1 120 4.76e-35 120
MsG0280007260.01.T01 MTR_1g101050 33.918 171 106 1 33 203 346 509 9.29e-35 129
MsG0280007260.01.T01 MTR_7g055793 44.030 134 75 0 65 198 329 462 3.62e-34 126
MsG0280007260.01.T01 MTR_7g055793 44.030 134 75 0 65 198 384 517 7.40e-34 126
MsG0280007260.01.T01 MTR_1g069200 35.461 141 91 0 63 203 370 510 1.12e-32 123
MsG0280007260.01.T01 MTR_8g469360 39.041 146 87 1 61 206 280 423 8.09e-32 119
MsG0280007260.01.T01 MTR_2g061200 39.437 142 86 0 64 205 388 529 2.17e-31 119
MsG0280007260.01.T01 MTR_2g023680 68.750 80 25 0 1 80 168 247 3.46e-31 117
MsG0280007260.01.T01 MTR_0025s0110 34.752 141 92 0 63 203 384 524 3.79e-31 119
MsG0280007260.01.T01 MTR_2g055530 52.500 80 38 0 1 80 95 174 9.41e-24 94.0
MsG0280007260.01.T01 MTR_5g095230 53.535 99 38 2 1 91 164 262 9.42e-24 97.8
MsG0280007260.01.T01 MTR_2g055430 53.750 80 37 0 1 80 168 247 1.55e-23 97.1
MsG0280007260.01.T01 MTR_8g042000 66.667 57 19 0 1 57 175 231 4.15e-19 84.7
MsG0280007260.01.T01 MTR_0727s0010 43.902 82 46 0 124 205 13 94 7.18e-19 78.6
MsG0280007260.01.T01 MTR_1g062190 37.313 134 75 5 50 180 387 514 1.29e-18 83.6
MsG0280007260.01.T01 MTR_7g079440 34.014 147 84 8 68 206 509 650 5.42e-16 76.3
MsG0280007260.01.T01 MTR_5g009110 32.022 178 88 7 58 204 246 421 1.66e-15 74.7
MsG0280007260.01.T01 MTR_5g009110 32.022 178 88 7 58 204 394 569 2.07e-15 74.3
MsG0280007260.01.T01 MTR_4g012320 28.750 160 98 5 53 205 73 223 2.33e-14 69.7
MsG0280007260.01.T01 MTR_6g035100 32.824 131 82 3 65 191 351 479 3.08e-14 70.9
MsG0280007260.01.T01 MTR_1g035750 30.303 165 97 5 53 204 345 504 3.71e-14 70.9
MsG0280007260.01.T01 MTR_4g075110 25.281 178 124 3 34 204 373 548 2.16e-13 68.6
MsG0280007260.01.T01 MTR_5g018990 32.061 131 86 3 61 190 355 483 3.91e-13 67.8
MsG0280007260.01.T01 MTR_8g104030 31.496 127 85 1 61 187 131 255 4.75e-13 66.6
MsG0280007260.01.T01 MTR_4g031820 34.343 99 63 2 1 97 179 277 6.48e-13 67.0
MsG0280007260.01.T01 MTR_1g036130 27.660 141 90 3 71 204 370 505 9.55e-13 66.6
MsG0280007260.01.T01 MTR_5g020020 34.211 114 69 3 68 179 272 381 9.60e-13 66.6
MsG0280007260.01.T01 MTR_5g091760 34.259 108 65 2 71 178 350 451 1.02e-12 66.6
MsG0280007260.01.T01 MTR_6g004600 29.012 162 105 4 51 204 355 514 1.05e-12 66.6
MsG0280007260.01.T01 MTR_6g004590 30.000 140 92 3 69 204 377 514 1.11e-12 66.6
MsG0280007260.01.T01 MTR_5g020020 34.211 114 69 3 68 179 346 455 1.18e-12 66.2
MsG0280007260.01.T01 MTR_7g033570 30.000 140 92 3 69 204 356 493 1.32e-12 66.2
MsG0280007260.01.T01 MTR_7g098550 40.506 79 47 0 2 80 168 246 1.57e-12 65.9
MsG0280007260.01.T01 MTR_1g035140 29.457 129 89 2 65 193 356 482 1.92e-12 65.9
MsG0280007260.01.T01 MTR_1g035940 27.660 141 90 3 71 204 371 506 1.96e-12 65.9
MsG0280007260.01.T01 MTR_1g035760 27.660 141 90 3 71 204 343 478 2.11e-12 65.5
MsG0280007260.01.T01 MTR_3g058060 30.556 144 95 4 51 191 343 484 2.21e-12 65.5
MsG0280007260.01.T01 MTR_5g092150 29.730 111 74 2 68 178 340 446 4.24e-12 64.7
MsG0280007260.01.T01 MTR_3g058210 31.818 132 87 3 63 193 356 485 5.16e-12 64.3
MsG0280007260.01.T01 MTR_1g035670 27.273 143 92 3 69 204 364 501 5.24e-12 64.3
MsG0280007260.01.T01 MTR_1g036010 25.926 162 102 4 56 204 350 506 5.41e-12 64.3
MsG0280007260.01.T01 MTR_8g036185 28.571 140 83 3 55 178 348 486 5.57e-12 64.3
MsG0280007260.01.T01 MTR_1g037560 28.188 149 103 3 59 204 395 542 5.68e-12 64.3
MsG0280007260.01.T01 MTR_5g070840 29.771 131 90 2 61 190 25 154 5.81e-12 62.0
MsG0280007260.01.T01 MTR_5g095290 29.530 149 100 4 44 191 336 480 7.08e-12 63.9
MsG0280007260.01.T01 MTR_7g033580 28.571 140 94 3 69 204 356 493 7.26e-12 63.9
MsG0280007260.01.T01 MTR_8g104100 27.848 158 110 2 34 191 88 241 9.16e-12 62.8
MsG0280007260.01.T01 MTR_3g058220 30.496 141 92 4 65 204 356 491 9.44e-12 63.5
MsG0280007260.01.T01 MTR_1g035580 28.358 134 90 3 71 200 360 491 1.11e-11 63.5
MsG0280007260.01.T01 MTR_1g035830 26.950 141 91 3 71 204 371 506 1.21e-11 63.5
MsG0280007260.01.T01 MTR_5g019010 26.786 168 114 4 31 191 318 483 1.28e-11 63.2
MsG0280007260.01.T01 MTR_8g098435 26.316 152 106 2 50 200 354 500 1.58e-11 63.2
MsG0280007260.01.T01 MTR_5g018980 29.688 128 87 3 65 191 361 486 1.99e-11 62.8
MsG0280007260.01.T01 MTR_1g050362 28.030 132 83 3 71 195 371 497 2.41e-11 62.4
MsG0280007260.01.T01 MTR_7g075610 28.099 121 82 3 63 179 353 472 3.41e-11 62.0
MsG0280007260.01.T01 MTR_1g015860 27.612 134 89 3 65 197 386 512 5.25e-11 61.6
MsG0280007260.01.T01 MTR_4g071710 26.531 147 103 3 33 178 339 481 6.48e-11 61.2
MsG0280007260.01.T01 MTR_1g037550 26.531 147 96 3 65 204 405 546 6.51e-11 61.2
MsG0280007260.01.T01 MTR_3g057970 30.172 116 78 3 65 178 345 459 7.27e-11 61.2
MsG0280007260.01.T01 MTR_3g057980 28.030 132 92 3 61 191 347 476 7.86e-11 60.8
MsG0280007260.01.T01 MTR_1g035800 27.536 138 94 3 71 204 376 511 9.77e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007260.01.T01 AT3G14610 57.447 141 60 0 65 205 372 512 1.40e-56 187
MsG0280007260.01.T01 AT3G14610 37.500 80 49 1 1 79 166 245 1.10e-11 63.5
MsG0280007260.01.T01 AT3G14640 58.156 141 59 0 65 205 374 514 2.71e-56 186
MsG0280007260.01.T01 AT3G14640 41.463 82 46 1 1 80 167 248 7.43e-16 75.9
MsG0280007260.01.T01 AT3G14640 58.156 141 59 0 65 205 396 536 4.57e-56 186
MsG0280007260.01.T01 AT3G14640 41.463 82 46 1 1 80 189 270 7.01e-16 75.9
MsG0280007260.01.T01 AT3G14630 56.028 141 62 0 65 205 368 508 4.70e-56 185
MsG0280007260.01.T01 AT3G14630 43.210 81 45 1 1 80 163 243 2.28e-16 77.4
MsG0280007260.01.T01 AT3G14630 56.028 141 62 0 65 205 423 563 5.46e-56 186
MsG0280007260.01.T01 AT3G14630 43.210 81 45 1 1 80 218 298 2.55e-16 77.0
MsG0280007260.01.T01 AT3G14690 56.028 141 62 0 65 205 372 512 1.26e-55 184
MsG0280007260.01.T01 AT3G14690 37.805 82 50 1 1 81 167 248 2.20e-14 71.6
MsG0280007260.01.T01 AT3G14690 56.028 141 62 0 65 205 407 547 4.01e-55 184
MsG0280007260.01.T01 AT3G14690 37.805 82 50 1 1 81 202 283 2.37e-14 71.2
MsG0280007260.01.T01 AT3G14680 55.319 141 63 0 65 205 372 512 4.61e-55 183
MsG0280007260.01.T01 AT3G14680 35.802 81 51 1 1 80 167 247 3.89e-13 67.8
MsG0280007260.01.T01 AT3G14660 54.610 141 64 0 65 205 226 366 2.40e-54 177
MsG0280007260.01.T01 AT3G14660 36.275 102 54 4 1 92 21 121 3.28e-13 67.8
MsG0280007260.01.T01 AT3G14660 54.610 141 64 0 65 205 372 512 5.36e-53 177
MsG0280007260.01.T01 AT3G14660 36.275 102 54 4 1 92 167 267 4.00e-13 67.8
MsG0280007260.01.T01 AT3G14650 53.901 141 65 0 65 205 372 512 6.19e-50 169
MsG0280007260.01.T01 AT3G14650 38.272 81 49 1 1 80 167 247 1.07e-13 69.3
MsG0280007260.01.T01 AT3G14620 54.348 138 62 1 65 201 374 511 1.35e-47 163
MsG0280007260.01.T01 AT3G14620 60.000 65 25 1 1 64 171 235 1.58e-18 83.6
MsG0280007260.01.T01 AT2G26710 41.497 147 86 0 59 205 369 515 3.30e-41 146
MsG0280007260.01.T01 AT2G26710 37.500 80 50 0 1 80 171 250 3.83e-13 67.8
MsG0280007260.01.T01 AT1G75130 43.357 143 77 1 65 207 367 505 2.38e-40 144
MsG0280007260.01.T01 AT5G24900 46.763 139 72 1 67 205 272 408 1.54e-38 137
MsG0280007260.01.T01 AT5G24900 46.099 141 74 1 65 205 387 525 1.10e-37 137
MsG0280007260.01.T01 AT5G24910 45.070 142 76 1 65 206 392 531 2.35e-37 136
MsG0280007260.01.T01 AT1G67110 41.844 141 79 2 63 203 371 508 4.11e-36 132
MsG0280007260.01.T01 AT5G38450 41.958 143 80 2 61 203 375 514 6.11e-36 132
MsG0280007260.01.T01 AT2G46950 42.754 138 79 0 68 205 433 570 8.56e-36 132
MsG0280007260.01.T01 AT2G46960 44.203 138 76 1 67 203 262 399 1.13e-35 129
MsG0280007260.01.T01 AT4G27710 41.606 137 80 0 67 203 379 515 1.02e-34 129
MsG0280007260.01.T01 AT2G46960 44.203 138 76 1 67 203 378 515 1.26e-34 128
MsG0280007260.01.T01 AT5G52400 33.523 176 114 2 28 203 345 517 4.18e-31 119
MsG0280007260.01.T01 AT1G31800 39.655 116 65 5 68 180 430 543 4.44e-18 82.4
MsG0280007260.01.T01 AT3G53130 36.090 133 81 4 71 200 403 534 7.46e-17 78.6
MsG0280007260.01.T01 AT3G26125 29.197 137 96 1 65 200 391 527 1.31e-16 77.8
MsG0280007260.01.T01 AT4G13290 30.147 136 82 2 65 199 344 467 3.61e-15 73.6
MsG0280007260.01.T01 AT4G13310 30.147 136 82 2 65 199 351 474 4.44e-15 73.6
MsG0280007260.01.T01 AT2G30770 30.000 170 108 4 7 174 300 460 5.75e-14 70.1
MsG0280007260.01.T01 AT3G48270 28.188 149 99 3 34 179 314 457 9.10e-14 69.7
MsG0280007260.01.T01 AT1G13150 25.899 139 102 1 65 202 376 514 1.84e-13 68.9
MsG0280007260.01.T01 AT3G14660 36.275 102 54 4 1 92 167 267 3.47e-13 67.8
MsG0280007260.01.T01 AT1G13140 24.460 139 104 1 65 202 357 495 4.34e-13 67.8
MsG0280007260.01.T01 AT1G13140 24.460 139 104 1 65 202 383 521 4.50e-13 67.8
MsG0280007260.01.T01 AT4G15110 30.822 146 67 5 67 181 411 553 6.03e-13 67.4
MsG0280007260.01.T01 AT5G24950 30.172 116 80 1 65 179 350 465 6.53e-13 67.0
MsG0280007260.01.T01 AT1G24540 27.143 140 101 1 65 203 379 518 1.21e-12 66.2
MsG0280007260.01.T01 AT3G25180 35.135 111 70 2 65 174 364 473 2.13e-12 65.9
MsG0280007260.01.T01 AT3G48310 26.050 119 87 1 65 182 343 461 5.04e-12 64.7
MsG0280007260.01.T01 AT3G48300 28.070 114 81 1 65 177 340 453 5.94e-12 64.3
MsG0280007260.01.T01 AT3G48300 28.070 114 81 1 65 177 342 455 5.95e-12 64.3
MsG0280007260.01.T01 AT2G26170 27.564 156 106 3 25 179 344 493 1.01e-11 63.5
MsG0280007260.01.T01 AT2G26170 27.564 156 106 3 25 179 261 410 1.02e-11 63.5
MsG0280007260.01.T01 AT1G57750 28.986 138 96 2 69 204 358 495 1.14e-11 63.5
MsG0280007260.01.T01 AT4G39510 26.857 175 116 5 36 204 336 504 3.29e-11 62.0
MsG0280007260.01.T01 AT2G42850 30.631 111 71 2 68 178 353 457 3.33e-11 62.0
MsG0280007260.01.T01 AT3G48280 27.826 115 82 1 65 178 342 456 4.11e-11 62.0
MsG0280007260.01.T01 AT5G10610 32.456 114 73 4 65 177 350 460 4.18e-11 62.0
MsG0280007260.01.T01 AT5G52320 27.007 137 98 2 71 205 366 502 5.20e-11 61.6
MsG0280007260.01.T01 AT5G42590 29.808 104 71 1 88 189 374 477 7.93e-11 61.2

Find 48 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATAATTAAATTTAAATT+TGG 0.150818 2:+12705179 None:intergenic
TGAATAGTCATTACTAAATT+TGG 0.170025 2:+12705555 None:intergenic
ACACTAATATGCGTTGTTAA+AGG 0.214543 2:-12705128 MsG0280007260.01.T01:three_prime_UTR
TTATGTTGAAGCAAAATAAT+TGG 0.233112 2:+12705795 None:intergenic
GAATAAAATTGTTATAGTTT+TGG 0.254011 2:-12705082 MsG0280007260.01.T01:three_prime_UTR
GTTGGCAAAGATATAAAGTT+TGG 0.266128 2:-12705855 MsG0280007260.01.T01:CDS
AAATCTACCATTTGTTGCTT+TGG 0.272507 2:+12705710 None:intergenic
ATGAAGTGCGTGACACTTAA+TGG 0.290423 2:-12705242 MsG0280007260.01.T01:three_prime_UTR
TAAATTTGGATAACAATAGA+TGG 0.320553 2:+12705193 None:intergenic
TTCAACATAACAATGAACTA+TGG 0.332986 2:-12705782 MsG0280007260.01.T01:CDS
GTTATTTCTCGAAACGCATT+TGG 0.377764 2:-12706842 MsG0280007260.01.T01:CDS
GCACTGATATGATTAGCAAA+TGG 0.429712 2:-12706937 MsG0280007260.01.T01:CDS
AGATTGTATCCACCTGCATT+TGG 0.432958 2:-12705891 MsG0280007260.01.T01:CDS
TTCACTATTGGAAGCAAAGA+TGG 0.441429 2:-12705637 MsG0280007260.01.T01:CDS
TGCTAAACGTTGAGTACAAA+TGG 0.454479 2:+12705319 None:intergenic
TAGAACCTCGTACAAAATCA+TGG 0.457849 2:+12705914 None:intergenic
TCAACATAACAATGAACTAT+GGG 0.459154 2:-12705781 MsG0280007260.01.T01:CDS
CACTGATATGATTAGCAAAT+GGG 0.461038 2:-12706936 MsG0280007260.01.T01:CDS
AATGACTATTCAGCCAGAAA+AGG 0.465992 2:-12705544 MsG0280007260.01.T01:CDS
GGAATTTCCAAAGCAACAAA+TGG 0.494078 2:-12705717 MsG0280007260.01.T01:CDS
TTTGGAGTATGAGCATAGGT+TGG 0.499601 2:+12705573 None:intergenic
GATCAGGTGAAATAGACATA+TGG 0.505098 2:-12706892 MsG0280007260.01.T01:CDS
TTTGGAAGTAGTTACGAAGA+AGG 0.507891 2:-12706824 MsG0280007260.01.T01:CDS
GTGCAACTTGTGAGGAAACT+TGG 0.512966 2:+12706956 None:intergenic
GTACAAATGGTATAGCTTAG+TGG 0.516635 2:+12705332 None:intergenic
ATTCCATCAGCAAATCTCTC+AGG 0.523232 2:+12705735 None:intergenic
CATGGAAGTACCTGCTGGAG+TGG 0.525797 2:-12705829 MsG0280007260.01.T01:CDS
ATGACTATTCAGCCAGAAAA+GGG 0.530494 2:-12705543 MsG0280007260.01.T01:CDS
AGAACCTCGTACAAAATCAT+GGG 0.532420 2:+12705915 None:intergenic
AAGAAAACCTCCACTCCAGC+AGG 0.537685 2:+12705819 None:intergenic
AGATATAAAGTTTGGAAACA+TGG 0.544012 2:-12705847 MsG0280007260.01.T01:CDS
ACATTGTCTTCAGATGGATC+AGG 0.548886 2:-12706908 MsG0280007260.01.T01:CDS
TTTGATCTTCAAAGAGAGCA+AGG 0.558424 2:-12706792 MsG0280007260.01.T01:intron
TTTGGTGTTACTCGATATGT+TGG 0.561527 2:-12705873 MsG0280007260.01.T01:CDS
TAAATTTGGAGTATGAGCAT+AGG 0.569435 2:+12705569 None:intergenic
AACAAGTGTGAAGCACATCA+TGG 0.581609 2:-12705297 MsG0280007260.01.T01:three_prime_UTR
GAGGCAACATTGTCTTCAGA+TGG 0.583162 2:-12706914 MsG0280007260.01.T01:CDS
AATCCTGAGAGATTTGCTGA+TGG 0.589596 2:-12705738 MsG0280007260.01.T01:CDS
GGAAACATGGAAGTACCTGC+TGG 0.602391 2:-12705834 MsG0280007260.01.T01:CDS
ATTTGGATAACAATAGATGG+TGG 0.614879 2:+12705196 None:intergenic
TCATATCAGTGCAACTTGTG+AGG 0.621779 2:+12706948 None:intergenic
GGAAGTACCTGCTGGAGTGG+AGG 0.635276 2:-12705826 MsG0280007260.01.T01:CDS
CGAGTAACACCAAATGCAGG+TGG 0.637298 2:+12705882 None:intergenic
TATCGAGTAACACCAAATGC+AGG 0.641498 2:+12705879 None:intergenic
TGATATGATTAGCAAATGGG+AGG 0.667892 2:-12706933 MsG0280007260.01.T01:CDS
CAACATAACAATGAACTATG+GGG 0.670836 2:-12705780 MsG0280007260.01.T01:CDS
TGTCACGCACTTCATGACAA+TGG 0.691778 2:+12705250 None:intergenic
GAACCTCGTACAAAATCATG+GGG 0.698612 2:+12705916 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACAATATAAACTTTAT+GGG + Chr2:12706586-12706605 None:intergenic 10.0%
!! TAATTACAATATAAACTTTA+TGG + Chr2:12706587-12706606 None:intergenic 10.0%
!! TTCTAATATAGTGATATATT+AGG - Chr2:12705326-12705345 MsG0280007260.01.T01:three_prime_UTR 15.0%
!!! AGATTTATATATTTTCCATT+TGG - Chr2:12706320-12706339 MsG0280007260.01.T01:intron 15.0%
!!! GAATAAAATTGTTATAGTTT+TGG - Chr2:12706931-12706950 MsG0280007260.01.T01:CDS 15.0%
!! TAAATTTGGATAACAATAGA+TGG + Chr2:12706823-12706842 None:intergenic 20.0%
!! TGAATAGTCATTACTAAATT+TGG + Chr2:12706461-12706480 None:intergenic 20.0%
!! TTATGTTGAAGCAAAATAAT+TGG + Chr2:12706221-12706240 None:intergenic 20.0%
!!! AACTTTTTATCATAACTGTT+GGG + Chr2:12706961-12706980 None:intergenic 20.0%
!!! AGGAAGTATTACAAATATTT+TGG - Chr2:12705703-12705722 MsG0280007260.01.T01:CDS 20.0%
!!! ATGCAATTGTTTTTAAAACT+TGG + Chr2:12706008-12706027 None:intergenic 20.0%
!!! TAACTTTTTATCATAACTGT+TGG + Chr2:12706962-12706981 None:intergenic 20.0%
!!! TTATATATTTTCCATTTGGA+GGG - Chr2:12706324-12706343 MsG0280007260.01.T01:intron 20.0%
!!! TTCAAAAGATGCATTTTTAA+AGG + Chr2:12705811-12705830 None:intergenic 20.0%
!!! TTTATATATTTTCCATTTGG+AGG - Chr2:12706323-12706342 MsG0280007260.01.T01:intron 20.0%
! AGATATAAAGTTTGGAAACA+TGG - Chr2:12706166-12706185 MsG0280007260.01.T01:intron 25.0%
! GTTATTTAATCCTTCATAGT+CGG + Chr2:12705740-12705759 None:intergenic 25.0%
! TCAACATAACAATGAACTAT+GGG - Chr2:12706232-12706251 MsG0280007260.01.T01:intron 25.0%
! TGAAATCTTTAATCCCTTTA+TGG - Chr2:12705266-12705285 MsG0280007260.01.T01:three_prime_UTR 25.0%
! TTATTTAATCCTTCATAGTC+GGG + Chr2:12705739-12705758 None:intergenic 25.0%
! TTCAACATAACAATGAACTA+TGG - Chr2:12706231-12706250 MsG0280007260.01.T01:intron 25.0%
!! TATATATTTTCCATTTGGAG+GGG - Chr2:12706325-12706344 MsG0280007260.01.T01:intron 25.0%
!! TTCTTTTGTGTTTAGGAAAT+CGG - Chr2:12705979-12705998 MsG0280007260.01.T01:intron 25.0%
AATCTTTAATCCCTTTATGG+AGG - Chr2:12705269-12705288 MsG0280007260.01.T01:three_prime_UTR 30.0%
ACACTAATATGCGTTGTTAA+AGG - Chr2:12706885-12706904 MsG0280007260.01.T01:CDS 30.0%
ATTTGGATAACAATAGATGG+TGG + Chr2:12706820-12706839 None:intergenic 30.0%
CAACATAACAATGAACTATG+GGG - Chr2:12706233-12706252 MsG0280007260.01.T01:intron 30.0%
CACTGATATGATTAGCAAAT+GGG - Chr2:12705077-12705096 MsG0280007260.01.T01:three_prime_UTR 30.0%
CATGGAAACAACAAGAATAT+GGG - Chr2:12705551-12705570 MsG0280007260.01.T01:CDS 30.0%
GTTGGCAAAGATATAAAGTT+TGG - Chr2:12706158-12706177 MsG0280007260.01.T01:intron 30.0%
TCATGGAAACAACAAGAATA+TGG - Chr2:12705550-12705569 MsG0280007260.01.T01:CDS 30.0%
TTCCATGATCTCTAATTTCT+TGG + Chr2:12705538-12705557 None:intergenic 30.0%
TTCCTAAACACAAAAGAACT+CGG + Chr2:12705977-12705996 None:intergenic 30.0%
! AAATCTACCATTTGTTGCTT+TGG + Chr2:12706306-12706325 None:intergenic 30.0%
! AGCATCACAGTAAGATTTTA+AGG - Chr2:12706531-12706550 MsG0280007260.01.T01:intron 30.0%
! ATATATTTTCCATTTGGAGG+GGG - Chr2:12706326-12706345 MsG0280007260.01.T01:intron 30.0%
! TAAATTTGGAGTATGAGCAT+AGG + Chr2:12706447-12706466 None:intergenic 30.0%
!! ATCACTTGTCAAGTTTTGTA+GGG + Chr2:12705151-12705170 None:intergenic 30.0%
!! ATTAGTCTTACCTCCATAAA+GGG + Chr2:12705282-12705301 None:intergenic 30.0%
AACAAAAAACCCGACTATGA+AGG - Chr2:12705727-12705746 MsG0280007260.01.T01:CDS 35.0%
AATGACTATTCAGCCAGAAA+AGG - Chr2:12706469-12706488 MsG0280007260.01.T01:intron 35.0%
AATGAGTCTTGAAGATGTAG+TGG - Chr2:12705574-12705593 MsG0280007260.01.T01:CDS 35.0%
ACCTAATAAGTCATTCTCAG+TGG + Chr2:12705495-12705514 None:intergenic 35.0%
AGAACCTCGTACAAAATCAT+GGG + Chr2:12706101-12706120 None:intergenic 35.0%
ATGACTATTCAGCCAGAAAA+GGG - Chr2:12706470-12706489 MsG0280007260.01.T01:intron 35.0%
ATGAGTCTTGAAGATGTAGT+GGG - Chr2:12705575-12705594 MsG0280007260.01.T01:CDS 35.0%
CACCAAGAAATTAGAGATCA+TGG - Chr2:12705533-12705552 MsG0280007260.01.T01:CDS 35.0%
CATGATCTCTAATTTCTTGG+TGG + Chr2:12705535-12705554 None:intergenic 35.0%
CTACTTCAACTATGCTTGTT+TGG - Chr2:12705632-12705651 MsG0280007260.01.T01:CDS 35.0%
GATCAGGTGAAATAGACATA+TGG - Chr2:12705121-12705140 MsG0280007260.01.T01:three_prime_UTR 35.0%
GGAATGCAAGTTATTCTACT+TGG - Chr2:12705597-12705616 MsG0280007260.01.T01:CDS 35.0%
GGAATTTCCAAAGCAACAAA+TGG - Chr2:12706296-12706315 MsG0280007260.01.T01:intron 35.0%
GGACAATGATATTGTTGAGT+AGG - Chr2:12705653-12705672 MsG0280007260.01.T01:CDS 35.0%
GTACAAATGGTATAGCTTAG+TGG + Chr2:12706684-12706703 None:intergenic 35.0%
TAGAACCTCGTACAAAATCA+TGG + Chr2:12706102-12706121 None:intergenic 35.0%
TGATATGATTAGCAAATGGG+AGG - Chr2:12705080-12705099 MsG0280007260.01.T01:three_prime_UTR 35.0%
TGCTAAACGTTGAGTACAAA+TGG + Chr2:12706697-12706716 None:intergenic 35.0%
TTCACTATTGGAAGCAAAGA+TGG - Chr2:12706376-12706395 MsG0280007260.01.T01:intron 35.0%
TTTGATCTTCAAAGAGAGCA+AGG - Chr2:12705221-12705240 MsG0280007260.01.T01:three_prime_UTR 35.0%
TTTGGAAGTAGTTACGAAGA+AGG - Chr2:12705189-12705208 MsG0280007260.01.T01:three_prime_UTR 35.0%
! GATGGTGGCAAAAATATAGA+TGG + Chr2:12706805-12706824 None:intergenic 35.0%
! GCACTGATATGATTAGCAAA+TGG - Chr2:12705076-12705095 MsG0280007260.01.T01:three_prime_UTR 35.0%
! GCATCTTTTGAACTCGTTTA+AGG - Chr2:12705819-12705838 MsG0280007260.01.T01:CDS 35.0%
! GGGACAAAACTTTTCACTAT+TGG - Chr2:12706364-12706383 MsG0280007260.01.T01:intron 35.0%
! TACCGAGTTCTTTTGTGTTT+AGG - Chr2:12705972-12705991 MsG0280007260.01.T01:intron 35.0%
!! CATCACTTGTCAAGTTTTGT+AGG + Chr2:12705152-12705171 None:intergenic 35.0%
!! CTTTTGAACTCGTTTAAGGT+TGG - Chr2:12705823-12705842 MsG0280007260.01.T01:CDS 35.0%
!! GATTAGTCTTACCTCCATAA+AGG + Chr2:12705283-12705302 None:intergenic 35.0%
!! GTTATTTCTCGAAACGCATT+TGG - Chr2:12705171-12705190 MsG0280007260.01.T01:three_prime_UTR 35.0%
!! TTTGGTGTTACTCGATATGT+TGG - Chr2:12706140-12706159 MsG0280007260.01.T01:intron 35.0%
AACAAGTGTGAAGCACATCA+TGG - Chr2:12706716-12706735 MsG0280007260.01.T01:intron 40.0%
ACATTGTCTTCAGATGGATC+AGG - Chr2:12705105-12705124 MsG0280007260.01.T01:three_prime_UTR 40.0%
ACCTGTAGGTGCAAGAAAAA+TGG + Chr2:12706660-12706679 None:intergenic 40.0%
AGATTGTATCCACCTGCATT+TGG - Chr2:12706122-12706141 MsG0280007260.01.T01:intron 40.0%
ATGAAGTGCGTGACACTTAA+TGG - Chr2:12706771-12706790 MsG0280007260.01.T01:intron 40.0%
ATTCCATCAGCAAATCTCTC+AGG + Chr2:12706281-12706300 None:intergenic 40.0%
CAAGAGAGAGAAAGCAATGA+AGG - Chr2:12705460-12705479 MsG0280007260.01.T01:intron 40.0%
GAACCTCGTACAAAATCATG+GGG + Chr2:12706100-12706119 None:intergenic 40.0%
GCAAGTTATTCTACTTGGCA+GGG - Chr2:12705602-12705621 MsG0280007260.01.T01:CDS 40.0%
GCCACTGAGAATGACTTATT+AGG - Chr2:12705491-12705510 MsG0280007260.01.T01:exon 40.0%
TATAGCTTAGTGGTACCTGT+AGG + Chr2:12706674-12706693 None:intergenic 40.0%
TATCGAGTAACACCAAATGC+AGG + Chr2:12706137-12706156 None:intergenic 40.0%
TCATATCAGTGCAACTTGTG+AGG + Chr2:12705068-12705087 None:intergenic 40.0%
TGAGTCTTGAAGATGTAGTG+GGG - Chr2:12705576-12705595 MsG0280007260.01.T01:CDS 40.0%
TGCAAGTTATTCTACTTGGC+AGG - Chr2:12705601-12705620 MsG0280007260.01.T01:CDS 40.0%
! ATAACATGAGCACCCTTTTC+TGG + Chr2:12706485-12706504 None:intergenic 40.0%
! TTTGGAGTATGAGCATAGGT+TGG + Chr2:12706443-12706462 None:intergenic 40.0%
! TTTTGTCCCATACAGACTCT+AGG + Chr2:12706353-12706372 None:intergenic 40.0%
!! AATCCTGAGAGATTTGCTGA+TGG - Chr2:12706275-12706294 MsG0280007260.01.T01:intron 40.0%
!! AGTCATACTCTGGCTTTAGT+CGG - Chr2:12705936-12705955 MsG0280007260.01.T01:intron 40.0%
!! CTTGTCAAGTTTTGTAGGGA+AGG + Chr2:12705147-12705166 None:intergenic 40.0%
AAGATCTCAAGCCAACCACT+AGG + Chr2:12705849-12705868 None:intergenic 45.0%
AGAGAGAAAGCAATGAAGGC+AGG - Chr2:12705464-12705483 MsG0280007260.01.T01:intron 45.0%
ATACCTACCGCTCTACTCAA+AGG - Chr2:12705385-12705404 MsG0280007260.01.T01:intron 45.0%
CTTGGAGTTTGCACATCTCA+AGG - Chr2:12705866-12705885 MsG0280007260.01.T01:CDS 45.0%
GAGGCAACATTGTCTTCAGA+TGG - Chr2:12705099-12705118 MsG0280007260.01.T01:three_prime_UTR 45.0%
GTGCAACTTGTGAGGAAACT+TGG + Chr2:12705060-12705079 None:intergenic 45.0%
TGTCACGCACTTCATGACAA+TGG + Chr2:12706766-12706785 None:intergenic 45.0%
TGTTGAGTAGGTACCCTGAT+TGG - Chr2:12705665-12705684 MsG0280007260.01.T01:CDS 45.0%
TTGCACGTTCTTGCCAATCA+GGG + Chr2:12705681-12705700 None:intergenic 45.0%
TTTGCACATCTCAAGGTCTC+AGG - Chr2:12705873-12705892 MsG0280007260.01.T01:CDS 45.0%
! GCTTTAGTCGGTTCTTGGAT+CGG - Chr2:12705948-12705967 MsG0280007260.01.T01:intron 45.0%
!! TAGTGGTTGGCTTGAGATCT+TGG - Chr2:12705848-12705867 MsG0280007260.01.T01:CDS 45.0%
!! TTTAAGGTTGGCCTAGTGGT+TGG - Chr2:12705835-12705854 MsG0280007260.01.T01:CDS 45.0%
!!! GCCATTTTTCTTGCACCTAC+AGG - Chr2:12706656-12706675 MsG0280007260.01.T01:intron 45.0%
!! TAAAAATATATAAACTTTAT+TGG - Chr2:12706036-12706055 MsG0280007260.01.T01:intron 5.0%
!! TGAATAATTAAATTTAAATT+TGG + Chr2:12706837-12706856 None:intergenic 5.0%
AACTTAACACCAAGGGCCAG+GGG + Chr2:12705907-12705926 None:intergenic 50.0%
AAGAAAACCTCCACTCCAGC+AGG + Chr2:12706197-12706216 None:intergenic 50.0%
ATTGGCAAGAACGTGCAAGG+AGG - Chr2:12705683-12705702 MsG0280007260.01.T01:CDS 50.0%
CCCGCTGAACTTAACACCAA+GGG + Chr2:12705914-12705933 None:intergenic 50.0%
CGAGTAACACCAAATGCAGG+TGG + Chr2:12706134-12706153 None:intergenic 50.0%
CTGATTGGCAAGAACGTGCA+AGG - Chr2:12705680-12705699 MsG0280007260.01.T01:CDS 50.0%
CTTGCACGTTCTTGCCAATC+AGG + Chr2:12705682-12705701 None:intergenic 50.0%
GAACTTAACACCAAGGGCCA+GGG + Chr2:12705908-12705927 None:intergenic 50.0%
GCATCCTCCTTTGAGTAGAG+CGG + Chr2:12705395-12705414 None:intergenic 50.0%
TGAACTTAACACCAAGGGCC+AGG + Chr2:12705909-12705928 None:intergenic 50.0%
! GCTCCCCATGATTTTGTACG+AGG - Chr2:12706094-12706113 MsG0280007260.01.T01:intron 50.0%
!! CCCTTGGTGTTAAGTTCAGC+GGG - Chr2:12705911-12705930 MsG0280007260.01.T01:CDS 50.0%
!! CTCGTTTAAGGTTGGCCTAG+TGG - Chr2:12705831-12705850 MsG0280007260.01.T01:CDS 50.0%
!! CTCTGGCTTTAGTCGGTTCT+TGG - Chr2:12705943-12705962 MsG0280007260.01.T01:intron 50.0%
!! GCCCTTGGTGTTAAGTTCAG+CGG - Chr2:12705910-12705929 MsG0280007260.01.T01:CDS 50.0%
!! GGAAACATGGAAGTACCTGC+TGG - Chr2:12706179-12706198 MsG0280007260.01.T01:intron 50.0%
ACTTAACACCAAGGGCCAGG+GGG + Chr2:12705906-12705925 None:intergenic 55.0%
AGGGGGTCCTAGAGTCTGTA+TGG - Chr2:12706343-12706362 MsG0280007260.01.T01:intron 55.0%
CCTACCGCTCTACTCAAAGG+AGG - Chr2:12705388-12705407 MsG0280007260.01.T01:intron 55.0%
CCTCCTTTGAGTAGAGCGGT+AGG + Chr2:12705391-12705410 None:intergenic 55.0%
GCCCGCTGAACTTAACACCA+AGG + Chr2:12705915-12705934 None:intergenic 55.0%
GGGGGTCCTAGAGTCTGTAT+GGG - Chr2:12706344-12706363 MsG0280007260.01.T01:intron 55.0%
GTCTCAGGTTTGATTCCCCC+TGG - Chr2:12705888-12705907 MsG0280007260.01.T01:CDS 55.0%
TCAGCGGGCAAGTCATACTC+TGG - Chr2:12705926-12705945 MsG0280007260.01.T01:intron 55.0%
!! ACTCTAGGACCCCCTCCAAA+TGG + Chr2:12706338-12706357 None:intergenic 55.0%
!! CATGGAAGTACCTGCTGGAG+TGG - Chr2:12706184-12706203 MsG0280007260.01.T01:intron 55.0%
GTTTGATTCCCCCTGGCCCT+TGG - Chr2:12705895-12705914 MsG0280007260.01.T01:CDS 60.0%
!! GGAAGTACCTGCTGGAGTGG+AGG - Chr2:12706187-12706206 MsG0280007260.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 12705051 12706984 12705051 ID=MsG0280007260.01;Name=MsG0280007260.01
Chr2 mRNA 12705051 12706984 12705051 ID=MsG0280007260.01.T01;Parent=MsG0280007260.01;Name=MsG0280007260.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.5|0.66|1|0.5|0.33|3|333|207
Chr2 exon 12705051 12705357 12705051 ID=MsG0280007260.01.T01:exon:521;Parent=MsG0280007260.01.T01
Chr2 exon 12705483 12705940 12705483 ID=MsG0280007260.01.T01:exon:520;Parent=MsG0280007260.01.T01
Chr2 exon 12706793 12706984 12706793 ID=MsG0280007260.01.T01:exon:519;Parent=MsG0280007260.01.T01
Chr2 CDS 12706793 12706984 12706793 ID=MsG0280007260.01.T01:cds;Parent=MsG0280007260.01.T01
Chr2 CDS 12705509 12705940 12705509 ID=MsG0280007260.01.T01:cds;Parent=MsG0280007260.01.T01
Chr2 three_prime_UTR 12705483 12705508 12705483 ID=MsG0280007260.01.T01:three_prime_utr;Parent=MsG0280007260.01.T01
Chr2 three_prime_UTR 12705051 12705357 12705051 ID=MsG0280007260.01.T01:three_prime_utr;Parent=MsG0280007260.01.T01
Gene Sequence

>MsG0280007260.01.T01

ATGGCACCAAGTTTCCTCACAAGTTGCACTGATATGATTAGCAAATGGGAGGCAACATTGTCTTCAGATGGATCAGGTGAAATAGACATATGGCCTTCCCTACAAAACTTGACAAGTGATGTTATTTCTCGAAACGCATTTGGAAGTAGTTACGAAGAAGGAAAAAATATTTTGATCTTCAAAGAGAGCAAGCTCCCCATGATTTTGTACGAGGTTCTAAGATTGTATCCACCTGCATTTGGTGTTACTCGATATGTTGGCAAAGATATAAAGTTTGGAAACATGGAAGTACCTGCTGGAGTGGAGGTTTTCTTACCAATTATTTTGCTTCAACATAACAATGAACTATGGGGTGATGATGCAAAGATGTTCAATCCTGAGAGATTTGCTGATGGAATTTCCAAAGCAACAAATGGTAGATTTATATATTTTCCATTTGGAGGGGGTCCTAGAGTCTGTATGGGACAAAACTTTTCACTATTGGAAGCAAAGATGGCAGTGTCAATGATTTTACAAAATTTTTACTTTGAACTTTCTCCAACCTATGCTCATACTCCAAATTTAGTAATGACTATTCAGCCAGAAAAGGGTGCTCATGTTATTCTACGCAAAGTGAAAACATAA

Protein sequence

>MsG0280007260.01.T01

MAPSFLTSCTDMISKWEATLSSDGSGEIDIWPSLQNLTSDVISRNAFGSSYEEGKNILIFKESKLPMILYEVLRLYPPAFGVTRYVGKDIKFGNMEVPAGVEVFLPIILLQHNNELWGDDAKMFNPERFADGISKATNGRFIYFPFGGGPRVCMGQNFSLLEAKMAVSMILQNFYFELSPTYAHTPNLVMTIQPEKGAHVILRKVKT*