AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009325.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009325.01.T01 MTR_2g461920 94.649 542 19 3 1 535 1 539 0.0 937
MsG0280009325.01.T01 MTR_4g109770 60.161 497 149 12 51 535 11 470 1.82e-174 501
MsG0280009325.01.T01 MTR_5g046670 38.275 371 189 13 1 348 64 417 1.15e-53 189
MsG0280009325.01.T01 MTR_3g099080 32.376 383 178 16 125 485 43 366 4.26e-31 124
MsG0280009325.01.T01 MTR_8g096780 53.077 130 49 3 125 242 45 174 1.08e-29 120
MsG0280009325.01.T01 MTR_7g028740 35.496 262 113 7 169 416 72 291 2.94e-27 113
MsG0280009325.01.T01 MTR_7g092930 52.679 112 44 3 165 267 59 170 1.05e-25 108
MsG0280009325.01.T01 MTR_1g053715 65.789 76 19 1 174 242 74 149 1.60e-25 108
MsG0280009325.01.T01 MTR_7g444860 53.774 106 36 3 168 260 143 248 2.44e-25 107
MsG0280009325.01.T01 MTR_1g035010 55.446 101 37 2 150 242 79 179 2.69e-25 111
MsG0280009325.01.T01 MTR_7g110320 45.968 124 58 3 124 240 97 218 9.38e-25 109
MsG0280009325.01.T01 MTR_7g110320 45.968 124 58 3 124 240 97 218 1.77e-24 108
MsG0280009325.01.T01 MTR_8g005960 63.158 76 21 1 174 242 187 262 2.53e-24 104
MsG0280009325.01.T01 MTR_2g046550 58.140 86 27 2 172 248 137 222 1.28e-23 105
MsG0280009325.01.T01 MTR_2g078770 54.545 99 33 2 153 244 42 135 2.77e-23 97.1
MsG0280009325.01.T01 MTR_3g085180 42.384 151 68 4 106 242 95 240 3.99e-23 102
MsG0280009325.01.T01 MTR_1g086250 56.818 88 31 1 160 240 133 220 5.55e-23 103
MsG0280009325.01.T01 MTR_2g014200 58.750 80 26 1 174 246 64 143 6.93e-23 95.1
MsG0280009325.01.T01 MTR_4g088555 58.442 77 25 1 174 243 63 139 1.35e-22 94.4
MsG0280009325.01.T01 MTR_8g463140 59.459 74 23 1 174 240 65 138 3.75e-21 91.3
MsG0280009325.01.T01 MTR_8g080690 47.778 90 40 1 160 242 137 226 1.23e-19 91.3
MsG0280009325.01.T01 MTR_8g080680 44.944 89 41 2 160 240 117 205 5.93e-17 83.6
MsG0280009325.01.T01 MTR_8g080670 49.315 73 30 1 174 239 162 234 1.96e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009325.01.T01 AT1G69170 42.661 218 105 4 73 283 35 239 3.02e-41 153
MsG0280009325.01.T01 AT5G50670 37.647 255 116 11 125 350 42 282 1.14e-29 120
MsG0280009325.01.T01 AT5G50670 37.647 255 116 11 125 350 42 282 1.14e-29 120
MsG0280009325.01.T01 AT5G50570 37.647 255 116 11 125 350 42 282 1.14e-29 120
MsG0280009325.01.T01 AT5G50570 37.647 255 116 11 125 350 42 282 1.14e-29 120
MsG0280009325.01.T01 AT2G42200 50.407 123 46 4 160 267 58 180 6.47e-26 109
MsG0280009325.01.T01 AT1G20980 58.889 90 30 1 158 240 104 193 1.12e-25 112
MsG0280009325.01.T01 AT3G57920 56.190 105 38 2 146 242 30 134 2.45e-25 107
MsG0280009325.01.T01 AT1G27370 46.721 122 49 4 157 267 155 271 3.59e-25 107
MsG0280009325.01.T01 AT1G27370 46.721 122 49 4 157 267 155 271 6.69e-25 107
MsG0280009325.01.T01 AT1G27370 46.721 122 49 4 157 267 155 271 6.69e-25 107
MsG0280009325.01.T01 AT1G27370 46.721 122 49 4 157 267 155 271 6.69e-25 107
MsG0280009325.01.T01 AT1G27370 46.721 122 49 4 157 267 155 271 6.69e-25 107
MsG0280009325.01.T01 AT1G27370 46.721 122 49 4 157 267 155 271 6.69e-25 107
MsG0280009325.01.T01 AT1G27370 46.721 122 49 4 157 267 155 271 6.69e-25 107
MsG0280009325.01.T01 AT2G47070 53.271 107 34 3 144 240 79 179 7.06e-25 109
MsG0280009325.01.T01 AT5G43270 57.317 82 28 1 170 244 165 246 1.40e-24 106
MsG0280009325.01.T01 AT5G43270 57.317 82 28 1 170 244 165 246 1.40e-24 106
MsG0280009325.01.T01 AT5G43270 57.317 82 28 1 170 244 165 246 1.40e-24 106
MsG0280009325.01.T01 AT1G02065 64.865 74 19 1 174 240 188 261 3.74e-24 103
MsG0280009325.01.T01 AT1G76580 56.122 98 30 2 158 242 92 189 1.40e-23 105
MsG0280009325.01.T01 AT1G76580 56.122 98 30 2 158 242 92 189 1.48e-23 105
MsG0280009325.01.T01 AT1G76580 56.122 98 30 2 158 242 92 189 2.88e-23 104
MsG0280009325.01.T01 AT3G60030 59.259 81 26 1 167 240 120 200 2.89e-23 104
MsG0280009325.01.T01 AT2G33810 58.108 74 24 1 174 240 54 127 1.29e-22 94.0
MsG0280009325.01.T01 AT1G27360 50.000 104 40 3 171 267 172 270 5.51e-22 98.6
MsG0280009325.01.T01 AT1G27360 50.000 104 40 3 171 267 172 270 5.51e-22 98.6
MsG0280009325.01.T01 AT1G27360 50.000 104 40 3 171 267 172 270 5.51e-22 98.6
MsG0280009325.01.T01 AT1G27360 50.000 104 40 3 171 267 172 270 5.51e-22 98.6
MsG0280009325.01.T01 AT1G53160 53.261 92 32 2 171 251 51 142 1.15e-21 92.8
MsG0280009325.01.T01 AT1G53160 53.261 92 32 2 171 251 51 142 1.15e-21 92.8
MsG0280009325.01.T01 AT3G15270 46.903 113 46 4 174 272 63 175 1.16e-21 92.8
MsG0280009325.01.T01 AT1G53160 53.261 92 32 2 171 251 51 142 1.65e-21 92.0
MsG0280009325.01.T01 AT5G18830 48.889 90 35 3 160 241 127 213 2.29e-15 79.7
MsG0280009325.01.T01 AT5G18830 48.889 90 35 3 160 241 127 213 2.37e-15 79.7
MsG0280009325.01.T01 AT5G18830 48.889 90 35 3 160 241 127 213 2.38e-15 79.7
MsG0280009325.01.T01 AT1G02065 63.415 41 15 0 174 214 188 228 3.88e-11 63.9
MsG0280009325.01.T01 AT2G47070 62.000 50 12 1 198 240 1 50 9.48e-11 65.1

Find 138 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATTACATTCACTAAAT+TGG 0.174095 2:-50392673 None:intergenic
TTTCCTTTCCTTCAAGAAAA+TGG 0.189331 2:+50391342 MsG0280009325.01.T01:CDS
TCGATTGGCTTGAAGAATTC+TGG 0.190530 2:-50391575 None:intergenic
TGTATCAATGTGTGACATTC+AGG 0.241788 2:+50392600 MsG0280009325.01.T01:three_prime_UTR
TGAGGATGTGCATTTATAAT+TGG 0.243639 2:-50391282 None:intergenic
CCACAAGTTGGTATTCATTC+TGG 0.255651 2:+50389651 MsG0280009325.01.T01:CDS
ACTATCCAGGTTTCATTTGC+TGG 0.261393 2:+50389560 MsG0280009325.01.T01:intron
AGAACCAAAGGTTCAATCTT+AGG 0.265075 2:+50388237 MsG0280009325.01.T01:CDS
ACCTATTGAGTTTGAATGCT+TGG 0.311089 2:-50388499 None:intergenic
GGGAGGTTGCTTCAGTCATA+TGG 0.315390 2:+50389681 MsG0280009325.01.T01:CDS
GCATCAGAGGCGAGCCTTGC+AGG 0.317553 2:+50391890 MsG0280009325.01.T01:CDS
AAACATGACTCATGCTATAA+TGG 0.320615 2:-50391644 None:intergenic
TTACTGTTTGATATTAATAT+AGG 0.332199 2:-50391732 None:intergenic
TCTCTTTCTGAAAATGCATT+TGG 0.333291 2:-50388453 None:intergenic
TATTGTTGTACGAAGGAAAC+AGG 0.337560 2:-50391314 None:intergenic
ATTGCTTACTGCCAAGTATA+TGG 0.338603 2:+50388684 MsG0280009325.01.T01:CDS
ATCCAAGGAGGCTCGAATTC+CGG 0.339302 2:+50391420 MsG0280009325.01.T01:CDS
GCTTTCTACGACGCTCATTA+TGG 0.341005 2:-50389629 None:intergenic
CCAAGTATATGGATGTAATA+AGG 0.348075 2:+50388695 MsG0280009325.01.T01:CDS
CCAACCTAAGATTGAACCTT+TGG 0.348079 2:-50388241 None:intergenic
TTGTCATAAACACTTCAATA+AGG 0.351623 2:+50392626 MsG0280009325.01.T01:three_prime_UTR
CGATTGGCTTGAAGAATTCT+GGG 0.354670 2:-50391574 None:intergenic
CCTATTGAGTTTGAATGCTT+GGG 0.355993 2:-50388498 None:intergenic
GGAGGTTGCTTCAGTCATAT+GGG 0.364253 2:+50389682 MsG0280009325.01.T01:CDS
CCCCATCTGCCATTTCGAAA+TGG 0.368112 2:-50391764 None:intergenic
TCAGGAAAGAACTTAATATC+TGG 0.386887 2:+50392425 MsG0280009325.01.T01:three_prime_UTR
CCTTATTACATCCATATACT+TGG 0.392117 2:-50388695 None:intergenic
ATCGTGGTCCCCTTTGAAAA+TGG 0.392209 2:-50388597 None:intergenic
CACTTCCTAAGGAGGTATCT+TGG 0.394888 2:-50391458 None:intergenic
TGAGTTTGAATGCTTGGGCT+TGG 0.395759 2:-50388493 None:intergenic
CCCATCTGCCATTTCGAAAT+GGG 0.399329 2:-50391763 None:intergenic
CCTGTGCAGCTTGTTGTGAC+TGG 0.401726 2:+50392372 MsG0280009325.01.T01:three_prime_UTR
CAAAGGTTCAATCTTAGGTT+GGG 0.407849 2:+50388242 MsG0280009325.01.T01:CDS
AGCTGTCGTAAACGTCTTGC+AGG 0.408574 2:+50389606 MsG0280009325.01.T01:CDS
TGAAGCTGACCAATGGCGGC+TGG 0.414356 2:+50392503 MsG0280009325.01.T01:three_prime_UTR
CCTAAAACCGGTTCCGCCTT+CGG 0.416837 2:-50391244 None:intergenic
TTACATTACATTCTAGCTGT+TGG 0.416888 2:-50392557 None:intergenic
ATAAAAGCCGAAGGCGGAAC+CGG 0.423047 2:+50391237 MsG0280009325.01.T01:CDS
GATTTGAAGCTTGGTAGATT+TGG 0.426241 2:+50388549 MsG0280009325.01.T01:CDS
TTACGTAAAATGCTTTCAAC+AGG 0.432048 2:+50391949 MsG0280009325.01.T01:exon
ATCCGGAATTCGAGCCTCCT+TGG 0.439031 2:-50391422 None:intergenic
TCACTCATTGATTTGAAGCT+TGG 0.440222 2:+50388540 MsG0280009325.01.T01:CDS
TGACTGGAAATATTCGTATC+AGG 0.442828 2:+50392388 MsG0280009325.01.T01:three_prime_UTR
GATGATGATGATGTTGTTGT+TGG 0.448687 2:+50388390 MsG0280009325.01.T01:CDS
TGAAATTGCCCATTTCGAAA+TGG 0.449136 2:+50391755 MsG0280009325.01.T01:CDS
ATCAGCTGTTCAAGGATTAT+CGG 0.450349 2:+50391506 MsG0280009325.01.T01:CDS
GGTGATCATAGAGATGGAAT+TGG 0.457178 2:+50388570 MsG0280009325.01.T01:CDS
ATCGAAGAGGGTGAGGTCTT+CGG 0.459977 2:+50388647 MsG0280009325.01.T01:CDS
GGTATTCATTCTGGAAGAGC+TGG 0.460050 2:+50389660 MsG0280009325.01.T01:CDS
TTATTCCAAGATACCTCCTT+AGG 0.463781 2:+50391453 MsG0280009325.01.T01:CDS
CCAAAGGTTCAATCTTAGGT+TGG 0.470404 2:+50388241 MsG0280009325.01.T01:CDS
GAAACATACCCTTTATCTTG+TGG 0.475491 2:-50388195 None:intergenic
ATTGAAGTCTTCACTTCCTA+AGG 0.476688 2:-50391469 None:intergenic
GAAACAGAATCAGCTGTTCA+AGG 0.477684 2:+50391498 MsG0280009325.01.T01:CDS
AGAAATGTGGAAATAGTAAC+TGG 0.480981 2:+50391205 MsG0280009325.01.T01:CDS
CCCAAGCATTCAAACTCAAT+AGG 0.481003 2:+50388498 MsG0280009325.01.T01:CDS
CCCATTTCGAAATGGCAGAT+GGG 0.483285 2:+50391763 MsG0280009325.01.T01:CDS
AATGGTCGTGCCATCTTCAC+AGG 0.486457 2:-50391829 None:intergenic
TATTGCGTCCCAGCCGCCAT+TGG 0.487032 2:-50392512 None:intergenic
ATGAGTCATGTTTCTGAAAG+TGG 0.489233 2:+50391654 MsG0280009325.01.T01:CDS
GACCGTCTTTCCTGTGAAGA+TGG 0.490853 2:+50391819 MsG0280009325.01.T01:CDS
CTGAAAGTGGCGTCTCGGAT+AGG 0.491794 2:+50391667 MsG0280009325.01.T01:CDS
TCAGCTGTTCAAGGATTATC+GGG 0.494261 2:+50391507 MsG0280009325.01.T01:CDS
GCATGGGAATTCCTGTCGAT+TGG 0.495766 2:-50391590 None:intergenic
GCCCATTTCGAAATGGCAGA+TGG 0.500959 2:+50391762 MsG0280009325.01.T01:CDS
CTGATGTTAGCATGGTTCCT+TGG 0.502694 2:-50391134 None:intergenic
ACTTCTAAAGTAATAGTGAA+TGG 0.503268 2:+50388777 MsG0280009325.01.T01:CDS
CCTCACCGGGGAGTATCTCT+TGG 0.503402 2:-50391170 None:intergenic
CAGGATAAGAACTTAGTGTC+AGG 0.506236 2:+50392407 MsG0280009325.01.T01:three_prime_UTR
AATGGTGCTACATCTGCTAC+TGG 0.508879 2:+50391360 MsG0280009325.01.T01:CDS
ATAATTGGAATAGAAGAAAG+AGG 0.509513 2:-50391267 None:intergenic
ATGATTCTTCCTGCTCTCTA+CGG 0.510890 2:+50391925 MsG0280009325.01.T01:CDS
TCCGTCTGAGTTAAATCATA+CGG 0.511466 2:+50391692 MsG0280009325.01.T01:CDS
TTACGTAATCCGTAGAGAGC+AGG 0.520716 2:-50391934 None:intergenic
GGCAGTAAGCAATCTGAGAA+TGG 0.521246 2:-50388674 None:intergenic
GAAAATGACAACAATAATCA+AGG 0.521619 2:+50388306 MsG0280009325.01.T01:CDS
TTGCTGGCTGAATTTGATGA+TGG 0.522089 2:+50389576 MsG0280009325.01.T01:CDS
AGAAGAAAGAGGCCTAAAAC+CGG 0.523177 2:-50391256 None:intergenic
TTGGAATAATGATTGTGATC+CGG 0.528558 2:-50391439 None:intergenic
CTATAATGGCTATGGCTGCT+CGG 0.529046 2:-50391630 None:intergenic
CGACAGTTGAAGCAAGTCAA+TGG 0.529505 2:-50391847 None:intergenic
TTGATCTTGTGATGGAGTCA+TGG 0.531002 2:+50388163 None:intergenic
AATAACTAAATGACCAGGCA+TGG 0.532105 2:-50391607 None:intergenic
CCAGTCACAACAAGCTGCAC+AGG 0.532430 2:-50392372 None:intergenic
TCGACAGGAATTCCCATGCC+TGG 0.536060 2:+50391594 MsG0280009325.01.T01:CDS
CCATTTCGAAATGGCAGATG+GGG 0.538353 2:+50391764 MsG0280009325.01.T01:CDS
TCAGAAGATAAGACCTCACC+GGG 0.542752 2:-50391183 None:intergenic
GAGGTTGCTTCAGTCATATG+GGG 0.543950 2:+50389683 MsG0280009325.01.T01:CDS
TTCGAGCCTCCTTGGATAGG+AGG 0.548698 2:-50391414 None:intergenic
GACTCATGCTATAATGGCTA+TGG 0.554681 2:-50391638 None:intergenic
CGACACCATCGAAGAGGGTG+AGG 0.555818 2:+50388640 MsG0280009325.01.T01:CDS
CGTTGACAAAATCCGACCCC+TGG 0.557627 2:-50391791 None:intergenic
AGATTTGGTGATCATAGAGA+TGG 0.560484 2:+50388564 MsG0280009325.01.T01:CDS
GTATTCATTCTGGAAGAGCT+GGG 0.561734 2:+50389661 MsG0280009325.01.T01:CDS
GAAGCTGACCAATGGCGGCT+GGG 0.561893 2:+50392504 MsG0280009325.01.T01:three_prime_UTR
GAATTCGAGCCTCCTTGGAT+AGG 0.563220 2:-50391417 None:intergenic
GAAGACCTCACCCTCTTCGA+TGG 0.563679 2:-50388645 None:intergenic
TGTTTCTGAAAGTGGCGTCT+CGG 0.565635 2:+50391662 MsG0280009325.01.T01:CDS
AATTGTTTATTGTTGTACGA+AGG 0.567910 2:-50391321 None:intergenic
TCCGTATGATTTAACTCAGA+CGG 0.569364 2:-50391693 None:intergenic
TTGGATATATGTAGATAGAG+AGG 0.569382 2:-50392538 None:intergenic
AATTCTTCAAGCCAATCGAC+AGG 0.569495 2:+50391579 MsG0280009325.01.T01:CDS
GAAGTCTTCACTTCCTAAGG+AGG 0.571303 2:-50391466 None:intergenic
CTTACAGATAGTAGATTCCA+AGG 0.572899 2:+50391117 MsG0280009325.01.T01:intron
CTCAGAAGATAAGACCTCAC+CGG 0.577587 2:-50391184 None:intergenic
ATATGCCAAGAGATACTCCC+CGG 0.578163 2:+50391165 MsG0280009325.01.T01:CDS
CTCGGAATAACTAAATGACC+AGG 0.578215 2:-50391612 None:intergenic
GGAAACAGGGTTCTTGAATG+AGG 0.578570 2:-50391300 None:intergenic
TGCCATCTTCACAGGAAAGA+CGG 0.587669 2:-50391821 None:intergenic
AGTCAATATCCTCCTATCCA+AGG 0.597117 2:+50391405 MsG0280009325.01.T01:CDS
AAAAGATGCTGATGTTAGCA+TGG 0.597201 2:-50391142 None:intergenic
TAGTGAATGGAATTGAACAA+AGG 0.600144 2:+50388790 MsG0280009325.01.T01:CDS
TTCAGCGTGTTGAGCATCAG+AGG 0.601537 2:+50391877 MsG0280009325.01.T01:CDS
CGGCTCGTGAAGCTGACCAA+TGG 0.603959 2:+50392496 MsG0280009325.01.T01:three_prime_UTR
CGTCGTAGAAAGCCACAAGT+TGG 0.607871 2:+50389639 MsG0280009325.01.T01:CDS
TGGATATATGTAGATAGAGA+GGG 0.609573 2:-50392537 None:intergenic
CCAGAATGAATACCAACTTG+TGG 0.611115 2:-50389651 None:intergenic
TCTGAGTTAAATCATACGGA+TGG 0.611214 2:+50391696 MsG0280009325.01.T01:CDS
ATAACTAAATGACCAGGCAT+GGG 0.613150 2:-50391606 None:intergenic
CTCGTGAAGCTGACCAATGG+CGG 0.613637 2:+50392499 MsG0280009325.01.T01:three_prime_UTR
GTCTTATCTTCTGAGAAATG+TGG 0.623862 2:+50391192 MsG0280009325.01.T01:CDS
GTTGTAAAGATTATCACAAG+AGG 0.629804 2:+50388727 MsG0280009325.01.T01:CDS
ACACTTGGTAGTAGAACCAA+AGG 0.641812 2:+50388225 MsG0280009325.01.T01:CDS
ATCGTCGACACCATCGAAGA+GGG 0.642893 2:+50388635 MsG0280009325.01.T01:CDS
GATCGTCGACACCATCGAAG+AGG 0.649184 2:+50388634 MsG0280009325.01.T01:CDS
TATGTTTCAAATGACACACT+TGG 0.649632 2:+50388210 MsG0280009325.01.T01:CDS
TGCAGACCTATAAAAGCCGA+AGG 0.654610 2:+50391228 MsG0280009325.01.T01:CDS
GGATTATCGGGAGTATCAGA+CGG 0.658305 2:+50391519 MsG0280009325.01.T01:CDS
ATTGTTGTACGAAGGAAACA+GGG 0.661617 2:-50391313 None:intergenic
TCCAGACGACGACAAAATCG+TGG 0.669160 2:-50388613 None:intergenic
CCAAGAGATACTCCCCGGTG+AGG 0.681967 2:+50391170 MsG0280009325.01.T01:CDS
GGATGTAATAAGGATTTGAG+TGG 0.689862 2:+50388705 MsG0280009325.01.T01:CDS
CAATATCCTCCTATCCAAGG+AGG 0.696180 2:+50391408 MsG0280009325.01.T01:CDS
TTCATTCTGGAAGAGCTGGG+AGG 0.705305 2:+50389664 MsG0280009325.01.T01:CDS
AGACCTATAAAAGCCGAAGG+CGG 0.722914 2:+50391231 MsG0280009325.01.T01:CDS
AGGTTGCTTCAGTCATATGG+GGG 0.727655 2:+50389684 MsG0280009325.01.T01:CDS
TTATCGGGAGTATCAGACGG+TGG 0.745082 2:+50391522 MsG0280009325.01.T01:CDS
CAGAAGATAAGACCTCACCG+GGG 0.863209 2:-50391182 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGGAATATTCATAAAA+TGG - Chr2:50389255-50389274 None:intergenic 15.0%
!! GAAATGAAAATTTATTTATG+TGG + Chr2:50392249-50392268 MsG0280009325.01.T01:intron 15.0%
!! GCTTTATAATATTAATAATC+AGG - Chr2:50390963-50390982 None:intergenic 15.0%
!! TTACTGTTTGATATTAATAT+AGG - Chr2:50391735-50391754 None:intergenic 15.0%
!! TTTAATATTCAAAACCATAT+TGG + Chr2:50391017-50391036 MsG0280009325.01.T01:intron 15.0%
!!! AAAAAAAAAGTCATTTTGAA+AGG - Chr2:50390985-50391004 None:intergenic 15.0%
!! AAGAGAAAATTTGTAACAAA+TGG - Chr2:50390391-50390410 None:intergenic 20.0%
!! ACTATAATCAACAGAAAAAT+AGG - Chr2:50389271-50389290 None:intergenic 20.0%
!! AGAAAACACAAAATTAGTAA+TGG + Chr2:50388914-50388933 MsG0280009325.01.T01:intron 20.0%
!! AGTTGAAAATTAGAGTATAA+TGG + Chr2:50390004-50390023 MsG0280009325.01.T01:intron 20.0%
!! ATTAAGAACAAAGTGAAAAT+TGG - Chr2:50390120-50390139 None:intergenic 20.0%
!! TAATTTGAAAACATGAAACA+TGG - Chr2:50392137-50392156 None:intergenic 20.0%
!! TTAAGAACAAAGTGAAAATT+GGG - Chr2:50390119-50390138 None:intergenic 20.0%
!! TTAATAATCAGGAAAGTAAA+TGG - Chr2:50390952-50390971 None:intergenic 20.0%
!! TTAGATTACATTCACTAAAT+TGG - Chr2:50392676-50392695 None:intergenic 20.0%
!!! AAACAAAAGGATTCATTTTA+TGG + Chr2:50390568-50390587 MsG0280009325.01.T01:intron 20.0%
!!! TGTTTTTTCCATTTTAGAAA+AGG - Chr2:50389231-50389250 None:intergenic 20.0%
! AAACTGAATTACGAATACTT+TGG - Chr2:50390226-50390245 None:intergenic 25.0%
! AAATATCGAGCTTGAAATTT+GGG + Chr2:50389899-50389918 MsG0280009325.01.T01:intron 25.0%
! AAATCCACTAAAAAGTAGTT+AGG - Chr2:50389765-50389784 None:intergenic 25.0%
! AAATGTTGTGAGTGATTTAA+TGG - Chr2:50392312-50392331 None:intergenic 25.0%
! AAATTATACTAGAGAGTTTG+AGG + Chr2:50390780-50390799 MsG0280009325.01.T01:intron 25.0%
! AATTGATCAATATATGGTCT+TGG + Chr2:50389158-50389177 MsG0280009325.01.T01:intron 25.0%
! AATTGTTTATTGTTGTACGA+AGG - Chr2:50391324-50391343 None:intergenic 25.0%
! AGACCATATATTGATCAATT+TGG - Chr2:50389158-50389177 None:intergenic 25.0%
! AGATAATGATATCATCTACT+TGG + Chr2:50390053-50390072 MsG0280009325.01.T01:intron 25.0%
! AGTCCAAATTGATCAATATA+TGG + Chr2:50389152-50389171 MsG0280009325.01.T01:intron 25.0%
! ATAATTGGAATAGAAGAAAG+AGG - Chr2:50391270-50391289 None:intergenic 25.0%
! ATTCAAAACCATATTGGTAA+AGG + Chr2:50391023-50391042 MsG0280009325.01.T01:intron 25.0%
! CAAGCAGATAAAGTAAAATT+TGG - Chr2:50389462-50389481 None:intergenic 25.0%
! GAAAATGACAACAATAATCA+AGG + Chr2:50388306-50388325 MsG0280009325.01.T01:CDS 25.0%
! TAAATATCGAGCTTGAAATT+TGG + Chr2:50389898-50389917 MsG0280009325.01.T01:intron 25.0%
! TATGAAAACCTTTACCAATA+TGG - Chr2:50391034-50391053 None:intergenic 25.0%
! TTGTCATAAACACTTCAATA+AGG + Chr2:50392626-50392645 MsG0280009325.01.T01:three_prime_UTR 25.0%
!! AATTTTACTTTATCTGCTTG+AGG + Chr2:50389462-50389481 MsG0280009325.01.T01:intron 25.0%
!! TTGAATTCTGATTGATTCTA+TGG + Chr2:50390336-50390355 MsG0280009325.01.T01:intron 25.0%
!! TTTACAATTTTCCACAAAGA+TGG + Chr2:50390184-50390203 MsG0280009325.01.T01:intron 25.0%
!!! ACTTCTAAAGTAATAGTGAA+TGG + Chr2:50388777-50388796 MsG0280009325.01.T01:CDS 25.0%
!!! ATGTTTTGTTTCACATCTTT+TGG + Chr2:50388855-50388874 MsG0280009325.01.T01:intron 25.0%
!!! ATTTTGATGAATGTTGATTC+TGG + Chr2:50392715-50392734 MsG0280009325.01.T01:three_prime_UTR 25.0%
!!! TACTACTTCCTTTTCTAAAA+TGG + Chr2:50389220-50389239 MsG0280009325.01.T01:intron 25.0%
!!! TCATTTTCTATGTTTTGTTG+AGG - Chr2:50388294-50388313 None:intergenic 25.0%
!!! TTAATAGATTCAGTCGTTTT+CGG + Chr2:50389196-50389215 MsG0280009325.01.T01:intron 25.0%
!!! TTGCAAAAAATTTAAGTTGC+TGG + Chr2:50388980-50388999 MsG0280009325.01.T01:intron 25.0%
AAACATGACTCATGCTATAA+TGG - Chr2:50391647-50391666 None:intergenic 30.0%
AATGAGTAACTTCACTTTAG+AGG - Chr2:50389430-50389449 None:intergenic 30.0%
ACAAAAGTGGGAGAATAATT+CGG - Chr2:50390420-50390439 None:intergenic 30.0%
ACCAAATCTGCATTATTTGT+GGG + Chr2:50389101-50389120 MsG0280009325.01.T01:intron 30.0%
AGAAATGTGGAAATAGTAAC+TGG + Chr2:50391205-50391224 MsG0280009325.01.T01:CDS 30.0%
AGATGACAAATGATAAAGGA+TGG - Chr2:50390453-50390472 None:intergenic 30.0%
ATCTACATGACAAACAATTG+AGG - Chr2:50389072-50389091 None:intergenic 30.0%
ATTGTTGAACAAGTCACTAA+TGG - Chr2:50390529-50390548 None:intergenic 30.0%
ATTTGGATTCTTTAGTCACA+TGG + Chr2:50390493-50390512 MsG0280009325.01.T01:intron 30.0%
CACTAAAAAGTAGTTAGGAA+GGG - Chr2:50389760-50389779 None:intergenic 30.0%
CCAAAGATGACAAATGATAA+AGG - Chr2:50390457-50390476 None:intergenic 30.0%
CCAAGTATATGGATGTAATA+AGG + Chr2:50388695-50388714 MsG0280009325.01.T01:CDS 30.0%
CCTTATTACATCCATATACT+TGG - Chr2:50388698-50388717 None:intergenic 30.0%
CCTTTATCATTTGTCATCTT+TGG + Chr2:50390454-50390473 MsG0280009325.01.T01:intron 30.0%
GAAGAATAAATCTTTGACGT+CGG + Chr2:50392193-50392212 MsG0280009325.01.T01:intron 30.0%
GAGGTTATATGTCAAGATTT+AGG - Chr2:50389050-50389069 None:intergenic 30.0%
GAGTAATTAACAAGATTGTG+TGG + Chr2:50391092-50391111 MsG0280009325.01.T01:intron 30.0%
GATGATATCATTATCTGTGA+AGG - Chr2:50390049-50390068 None:intergenic 30.0%
GGTTTAGTGACTATCATAAT+CGG + Chr2:50390589-50390608 MsG0280009325.01.T01:intron 30.0%
GTTGAGGTAAAAAACTAGAT+GGG - Chr2:50388278-50388297 None:intergenic 30.0%
GTTGTAAAGATTATCACAAG+AGG + Chr2:50388727-50388746 MsG0280009325.01.T01:CDS 30.0%
TAATTACTCAGAGACAAACA+TGG - Chr2:50391081-50391100 None:intergenic 30.0%
TACCAAATCTGCATTATTTG+TGG + Chr2:50389100-50389119 MsG0280009325.01.T01:intron 30.0%
TAGTGAATGGAATTGAACAA+AGG + Chr2:50388790-50388809 MsG0280009325.01.T01:CDS 30.0%
TATGTTTCAAATGACACACT+TGG + Chr2:50388210-50388229 MsG0280009325.01.T01:CDS 30.0%
TCAAATAATCCAATGCAAAC+AGG + Chr2:50390891-50390910 MsG0280009325.01.T01:intron 30.0%
TCAGGAAAGAACTTAATATC+TGG + Chr2:50392425-50392444 MsG0280009325.01.T01:three_prime_UTR 30.0%
TGAGGATGTGCATTTATAAT+TGG - Chr2:50391285-50391304 None:intergenic 30.0%
TGGATATATGTAGATAGAGA+GGG - Chr2:50392540-50392559 None:intergenic 30.0%
TGTTGAGGTAAAAAACTAGA+TGG - Chr2:50388279-50388298 None:intergenic 30.0%
TTACGTAAAATGCTTTCAAC+AGG + Chr2:50391949-50391968 MsG0280009325.01.T01:exon 30.0%
TTGAGGTAAAAAACTAGATG+GGG - Chr2:50388277-50388296 None:intergenic 30.0%
TTGGAATAATGATTGTGATC+CGG - Chr2:50391442-50391461 None:intergenic 30.0%
TTGGATATATGTAGATAGAG+AGG - Chr2:50392541-50392560 None:intergenic 30.0%
TTTCCTTTCCTTCAAGAAAA+TGG + Chr2:50391342-50391361 MsG0280009325.01.T01:CDS 30.0%
TTTGCAACATATGTTTGAGA+AGG - Chr2:50388967-50388986 None:intergenic 30.0%
! AATGCCAAATTTTCGTCAAT+GGG + Chr2:50390621-50390640 MsG0280009325.01.T01:intron 30.0%
! AATTGGTACACCATTTTCAA+AGG + Chr2:50388587-50388606 MsG0280009325.01.T01:CDS 30.0%
! ATTGGTACACCATTTTCAAA+GGG + Chr2:50388588-50388607 MsG0280009325.01.T01:CDS 30.0%
! CAACAATAATCAAGGTTTTG+AGG + Chr2:50388314-50388333 MsG0280009325.01.T01:CDS 30.0%
! CACTAGTAGTTCTTTTGTTA+TGG + Chr2:50388425-50388444 MsG0280009325.01.T01:CDS 30.0%
! GAAGTTCTTTTCTGCAAAAA+TGG - Chr2:50392350-50392369 None:intergenic 30.0%
! GACTTGTTCAACAATTACAA+TGG + Chr2:50390534-50390553 MsG0280009325.01.T01:intron 30.0%
! GACTTTTACTTTACTAAGCT+TGG + Chr2:50389313-50389332 MsG0280009325.01.T01:intron 30.0%
! GGAATCATATCTGAAACAAA+AGG + Chr2:50390555-50390574 MsG0280009325.01.T01:intron 30.0%
! TAATGTTTAGCTTACTATCC+AGG + Chr2:50389547-50389566 MsG0280009325.01.T01:intron 30.0%
! TCTCTTTCTGAAAATGCATT+TGG - Chr2:50388456-50388475 None:intergenic 30.0%
! TTACATTACATTCTAGCTGT+TGG - Chr2:50392560-50392579 None:intergenic 30.0%
!! AATTATTCTCCCACTTTTGT+TGG + Chr2:50390420-50390439 MsG0280009325.01.T01:intron 30.0%
!! AGTTTTGATCCACAAGATAA+AGG + Chr2:50388186-50388205 MsG0280009325.01.T01:CDS 30.0%
!! GTGTAAAGCTAGCTTTAATT+TGG + Chr2:50390476-50390495 MsG0280009325.01.T01:intron 30.0%
!! GTTTTGATCCACAAGATAAA+GGG + Chr2:50388187-50388206 MsG0280009325.01.T01:CDS 30.0%
!! TAATAGATTCAGTCGTTTTC+GGG + Chr2:50389197-50389216 MsG0280009325.01.T01:intron 30.0%
!! TAGTTTTACTTGTGCTGAAT+CGG + Chr2:50392476-50392495 MsG0280009325.01.T01:three_prime_UTR 30.0%
!!! AATCAAGGTTTTGAGGAATT+GGG + Chr2:50388321-50388340 MsG0280009325.01.T01:CDS 30.0%
!!! TAATCAAGGTTTTGAGGAAT+TGG + Chr2:50388320-50388339 MsG0280009325.01.T01:CDS 30.0%
AAAAGATGCTGATGTTAGCA+TGG - Chr2:50391145-50391164 None:intergenic 35.0%
AAATACACAGTAGTACGACA+TGG - Chr2:50392049-50392068 None:intergenic 35.0%
AACATCTGATCTTGATCCAA+CGG - Chr2:50389838-50389857 None:intergenic 35.0%
AATAACTAAATGACCAGGCA+TGG - Chr2:50391610-50391629 None:intergenic 35.0%
ACCTATTGAGTTTGAATGCT+TGG - Chr2:50388502-50388521 None:intergenic 35.0%
AGAACCAAAGGTTCAATCTT+AGG + Chr2:50388237-50388256 MsG0280009325.01.T01:CDS 35.0%
ATAACTAAATGACCAGGCAT+GGG - Chr2:50391609-50391628 None:intergenic 35.0%
ATCAGCTGTTCAAGGATTAT+CGG + Chr2:50391506-50391525 MsG0280009325.01.T01:CDS 35.0%
ATGGATATAGATCTACAGCA+TGG + Chr2:50390355-50390374 MsG0280009325.01.T01:intron 35.0%
ATTATTTGTGGGGAAATGGT+TGG + Chr2:50389112-50389131 MsG0280009325.01.T01:intron 35.0%
ATTGAAGTCTTCACTTCCTA+AGG - Chr2:50391472-50391491 None:intergenic 35.0%
ATTGCTTACTGCCAAGTATA+TGG + Chr2:50388684-50388703 MsG0280009325.01.T01:CDS 35.0%
ATTGTTGTACGAAGGAAACA+GGG - Chr2:50391316-50391335 None:intergenic 35.0%
CAAAGGTTCAATCTTAGGTT+GGG + Chr2:50388242-50388261 MsG0280009325.01.T01:CDS 35.0%
CATATGGGGGTAATATTCTA+TGG + Chr2:50389697-50389716 MsG0280009325.01.T01:intron 35.0%
CATGCAATTAATTAGCCCAT+TGG + Chr2:50389809-50389828 MsG0280009325.01.T01:intron 35.0%
CCAAATCTGCATTATTTGTG+GGG + Chr2:50389102-50389121 MsG0280009325.01.T01:intron 35.0%
CCACTAAAAAGTAGTTAGGA+AGG - Chr2:50389761-50389780 None:intergenic 35.0%
CCTATTGAGTTTGAATGCTT+GGG - Chr2:50388501-50388520 None:intergenic 35.0%
CTTACAGATAGTAGATTCCA+AGG + Chr2:50391117-50391136 MsG0280009325.01.T01:intron 35.0%
GAAACATACCCTTTATCTTG+TGG - Chr2:50388198-50388217 None:intergenic 35.0%
GGATGTAATAAGGATTTGAG+TGG + Chr2:50388705-50388724 MsG0280009325.01.T01:CDS 35.0%
TAAAAAGTAGTTAGGAAGGG+TGG - Chr2:50389757-50389776 None:intergenic 35.0%
TAATTAGCTGTTCGTCCAAA+TGG - Chr2:50390649-50390668 None:intergenic 35.0%
TACATGACAAACAATTGAGG+AGG - Chr2:50389069-50389088 None:intergenic 35.0%
TATTGTTGTACGAAGGAAAC+AGG - Chr2:50391317-50391336 None:intergenic 35.0%
TCCGTATGATTTAACTCAGA+CGG - Chr2:50391696-50391715 None:intergenic 35.0%
TCCGTCTGAGTTAAATCATA+CGG + Chr2:50391692-50391711 MsG0280009325.01.T01:CDS 35.0%
TCTGAGTTAAATCATACGGA+TGG + Chr2:50391696-50391715 MsG0280009325.01.T01:CDS 35.0%
TGAAATTGCCCATTTCGAAA+TGG + Chr2:50391755-50391774 MsG0280009325.01.T01:CDS 35.0%
TGACTGGAAATATTCGTATC+AGG + Chr2:50392388-50392407 MsG0280009325.01.T01:three_prime_UTR 35.0%
TGTATCAATGTGTGACATTC+AGG + Chr2:50392600-50392619 MsG0280009325.01.T01:three_prime_UTR 35.0%
TTATTCCAAGATACCTCCTT+AGG + Chr2:50391453-50391472 MsG0280009325.01.T01:CDS 35.0%
TTGTCAACAATGTAGTAGGT+TGG + Chr2:50388815-50388834 MsG0280009325.01.T01:intron 35.0%
! ATGAGTCATGTTTCTGAAAG+TGG + Chr2:50391654-50391673 MsG0280009325.01.T01:CDS 35.0%
! ATGTAGCACCATTTTCTTGA+AGG - Chr2:50391353-50391372 None:intergenic 35.0%
! ATTGGGTTTTCATGGTATGT+TGG + Chr2:50388338-50388357 MsG0280009325.01.T01:CDS 35.0%
! GAATGCCAAATTTTCGTCAA+TGG + Chr2:50390620-50390639 MsG0280009325.01.T01:intron 35.0%
! GATGATGATGATGTTGTTGT+TGG + Chr2:50388390-50388409 MsG0280009325.01.T01:CDS 35.0%
! GATTTGAAGCTTGGTAGATT+TGG + Chr2:50388549-50388568 MsG0280009325.01.T01:CDS 35.0%
! GTCTTATCTTCTGAGAAATG+TGG + Chr2:50391192-50391211 MsG0280009325.01.T01:CDS 35.0%
! TCACCAAATTTTCTCTACGT+CGG + Chr2:50392001-50392020 MsG0280009325.01.T01:intron 35.0%
! TTGGGTTTTCATGGTATGTT+GGG + Chr2:50388339-50388358 MsG0280009325.01.T01:CDS 35.0%
! TTGGTACACCATTTTCAAAG+GGG + Chr2:50388589-50388608 MsG0280009325.01.T01:CDS 35.0%
! TTTGAGGAATTGGGTTTTCA+TGG + Chr2:50388330-50388349 MsG0280009325.01.T01:CDS 35.0%
!! AGATTTGGTGATCATAGAGA+TGG + Chr2:50388564-50388583 MsG0280009325.01.T01:CDS 35.0%
!! CAATGGGCTAATTAATTGCA+TGG - Chr2:50389811-50389830 None:intergenic 35.0%
!! GGATTTTAGTCACTTAAGAG+CGG + Chr2:50389334-50389353 MsG0280009325.01.T01:intron 35.0%
!! GGTTTTGTCAACAATGTAGT+AGG + Chr2:50388811-50388830 MsG0280009325.01.T01:intron 35.0%
!! TCACTCATTGATTTGAAGCT+TGG + Chr2:50388540-50388559 MsG0280009325.01.T01:CDS 35.0%
!!! ACATCTTTTTTCCCTTCATC+GGG - Chr2:50390308-50390327 None:intergenic 35.0%
!!! CACATCTTTTTTCCCTTCAT+CGG - Chr2:50390309-50390328 None:intergenic 35.0%
!!! CCTTCCTAACTACTTTTTAG+TGG + Chr2:50389758-50389777 MsG0280009325.01.T01:intron 35.0%
AAGATGGAATGCCTATCATC+TGG + Chr2:50390200-50390219 MsG0280009325.01.T01:intron 40.0%
AATTCTTCAAGCCAATCGAC+AGG + Chr2:50391579-50391598 MsG0280009325.01.T01:CDS 40.0%
ACTATCCAGGTTTCATTTGC+TGG + Chr2:50389560-50389579 MsG0280009325.01.T01:intron 40.0%
AGAAGAAAGAGGCCTAAAAC+CGG - Chr2:50391259-50391278 None:intergenic 40.0%
AGACTGCTTGGAATAGCTTA+TGG - Chr2:50390844-50390863 None:intergenic 40.0%
AGTCAATATCCTCCTATCCA+AGG + Chr2:50391405-50391424 MsG0280009325.01.T01:CDS 40.0%
ATGATTCTTCCTGCTCTCTA+CGG + Chr2:50391925-50391944 MsG0280009325.01.T01:CDS 40.0%
CAGGATAAGAACTTAGTGTC+AGG + Chr2:50392407-50392426 MsG0280009325.01.T01:three_prime_UTR 40.0%
CCAAAGGTTCAATCTTAGGT+TGG + Chr2:50388241-50388260 MsG0280009325.01.T01:CDS 40.0%
CCAACCTAAGATTGAACCTT+TGG - Chr2:50388244-50388263 None:intergenic 40.0%
CCAGAATGAATACCAACTTG+TGG - Chr2:50389654-50389673 None:intergenic 40.0%
CCCAAGCATTCAAACTCAAT+AGG + Chr2:50388498-50388517 MsG0280009325.01.T01:CDS 40.0%
CCCCACAAATAATGCAGATT+TGG - Chr2:50389105-50389124 None:intergenic 40.0%
CTCGGAATAACTAAATGACC+AGG - Chr2:50391615-50391634 None:intergenic 40.0%
CTGCATTATTTGTGGGGAAA+TGG + Chr2:50389108-50389127 MsG0280009325.01.T01:intron 40.0%
CTTCAGCAAATATATGCACG+TGG - Chr2:50389986-50390005 None:intergenic 40.0%
GAAACAGAATCAGCTGTTCA+AGG + Chr2:50391498-50391517 MsG0280009325.01.T01:CDS 40.0%
GAATACTTTGGCCAGATGAT+AGG - Chr2:50390214-50390233 None:intergenic 40.0%
GACTCATGCTATAATGGCTA+TGG - Chr2:50391641-50391660 None:intergenic 40.0%
GCAATTAATTAGCCCATTGG+TGG + Chr2:50389812-50389831 MsG0280009325.01.T01:intron 40.0%
GGTGATCATAGAGATGGAAT+TGG + Chr2:50388570-50388589 MsG0280009325.01.T01:CDS 40.0%
GGTGCAAAACCAACAAAAGT+GGG - Chr2:50390432-50390451 None:intergenic 40.0%
GGTTCCCATTGACGAAAATT+TGG - Chr2:50390628-50390647 None:intergenic 40.0%
TAGCCGACGTAGAGAAAATT+TGG - Chr2:50392007-50392026 None:intergenic 40.0%
TCAGCTGTTCAAGGATTATC+GGG + Chr2:50391507-50391526 MsG0280009325.01.T01:CDS 40.0%
TGATAGGCATTCCATCTTTG+TGG - Chr2:50390198-50390217 None:intergenic 40.0%
TGGATTCTTTAGTCACATGG+TGG + Chr2:50390496-50390515 MsG0280009325.01.T01:intron 40.0%
TGGTGCAAAACCAACAAAAG+TGG - Chr2:50390433-50390452 None:intergenic 40.0%
TTTCGTCAATGGGAACCATT+TGG + Chr2:50390631-50390650 MsG0280009325.01.T01:intron 40.0%
! ACACTTGGTAGTAGAACCAA+AGG + Chr2:50388225-50388244 MsG0280009325.01.T01:CDS 40.0%
! GCACCATTTTCTTGAAGGAA+AGG - Chr2:50391348-50391367 None:intergenic 40.0%
! GTATTCATTCTGGAAGAGCT+GGG + Chr2:50389661-50389680 MsG0280009325.01.T01:CDS 40.0%
! TTGCTGGCTGAATTTGATGA+TGG + Chr2:50389576-50389595 MsG0280009325.01.T01:CDS 40.0%
!! CCACAAGTTGGTATTCATTC+TGG + Chr2:50389651-50389670 MsG0280009325.01.T01:CDS 40.0%
!! CGATTGGCTTGAAGAATTCT+GGG - Chr2:50391577-50391596 None:intergenic 40.0%
!! TCGATTGGCTTGAAGAATTC+TGG - Chr2:50391578-50391597 None:intergenic 40.0%
!!! CATCTTTTTTCCCTTCATCG+GGG - Chr2:50390307-50390326 None:intergenic 40.0%
AGACCTATAAAAGCCGAAGG+CGG + Chr2:50391231-50391250 MsG0280009325.01.T01:CDS 45.0%
AGGTTGCTTCAGTCATATGG+GGG + Chr2:50389684-50389703 MsG0280009325.01.T01:CDS 45.0%
ATATGCCAAGAGATACTCCC+CGG + Chr2:50391165-50391184 MsG0280009325.01.T01:CDS 45.0%
CAATATCCTCCTATCCAAGG+AGG + Chr2:50391408-50391427 MsG0280009325.01.T01:CDS 45.0%
CCATTTCGAAATGGCAGATG+GGG + Chr2:50391764-50391783 MsG0280009325.01.T01:CDS 45.0%
CCCATTTCGAAATGGCAGAT+GGG + Chr2:50391763-50391782 MsG0280009325.01.T01:CDS 45.0%
CGACAGTTGAAGCAAGTCAA+TGG - Chr2:50391850-50391869 None:intergenic 45.0%
CTATAATGGCTATGGCTGCT+CGG - Chr2:50391633-50391652 None:intergenic 45.0%
CTCAGAAGATAAGACCTCAC+CGG - Chr2:50391187-50391206 None:intergenic 45.0%
CTGATGTTAGCATGGTTCCT+TGG - Chr2:50391137-50391156 None:intergenic 45.0%
GAAGTCTTCACTTCCTAAGG+AGG - Chr2:50391469-50391488 None:intergenic 45.0%
GAGGTTGCTTCAGTCATATG+GGG + Chr2:50389683-50389702 MsG0280009325.01.T01:CDS 45.0%
GCATTCCGCGATCAATACAT+AGG - Chr2:50389950-50389969 None:intergenic 45.0%
GCTTTACAGCCTGTTTGCAT+TGG - Chr2:50390903-50390922 None:intergenic 45.0%
GCTTTCTACGACGCTCATTA+TGG - Chr2:50389632-50389651 None:intergenic 45.0%
GGAAACAGGGTTCTTGAATG+AGG - Chr2:50391303-50391322 None:intergenic 45.0%
GGAAGGGTGGAAAATTGAGA+AGG - Chr2:50389744-50389763 None:intergenic 45.0%
GGAGGTTGCTTCAGTCATAT+GGG + Chr2:50389682-50389701 MsG0280009325.01.T01:CDS 45.0%
GGCAGTAAGCAATCTGAGAA+TGG - Chr2:50388677-50388696 None:intergenic 45.0%
TCAGAAGATAAGACCTCACC+GGG - Chr2:50391186-50391205 None:intergenic 45.0%
TGAGTTTGAATGCTTGGGCT+TGG - Chr2:50388496-50388515 None:intergenic 45.0%
TGCAGACCTATAAAAGCCGA+AGG + Chr2:50391228-50391247 MsG0280009325.01.T01:CDS 45.0%
TGCCATCTTCACAGGAAAGA+CGG - Chr2:50391824-50391843 None:intergenic 45.0%
TTACGTAATCCGTAGAGAGC+AGG - Chr2:50391937-50391956 None:intergenic 45.0%
TTAGAACCTGTGAGACTGCT+TGG - Chr2:50390856-50390875 None:intergenic 45.0%
TTCAGCCAGCAAATGAAACC+TGG - Chr2:50389568-50389587 None:intergenic 45.0%
TTCCGCGATCAATACATAGG+TGG - Chr2:50389947-50389966 None:intergenic 45.0%
! ATCGTGGTCCCCTTTGAAAA+TGG - Chr2:50388600-50388619 None:intergenic 45.0%
! ATTTTCTCGCTTCACCTGCA+AGG - Chr2:50391907-50391926 None:intergenic 45.0%
! CCCATCTGCCATTTCGAAAT+GGG - Chr2:50391766-50391785 None:intergenic 45.0%
! GACCACCTATGTATTGATCG+CGG + Chr2:50389942-50389961 MsG0280009325.01.T01:intron 45.0%
! GGTATTCATTCTGGAAGAGC+TGG + Chr2:50389660-50389679 MsG0280009325.01.T01:CDS 45.0%
! TGTTTCTGAAAGTGGCGTCT+CGG + Chr2:50391662-50391681 MsG0280009325.01.T01:CDS 45.0%
!! AATGGTGCTACATCTGCTAC+TGG + Chr2:50391360-50391379 MsG0280009325.01.T01:CDS 45.0%
!! CACTTCCTAAGGAGGTATCT+TGG - Chr2:50391461-50391480 None:intergenic 45.0%
!! GGATTATCGGGAGTATCAGA+CGG + Chr2:50391519-50391538 MsG0280009325.01.T01:CDS 45.0%
!! TTTGAATATTAAATAAAAAA+TGG - Chr2:50391010-50391029 None:intergenic 5.0%
AATGGTCGTGCCATCTTCAC+AGG - Chr2:50391832-50391851 None:intergenic 50.0%
ACGTGTTCTTACCCCGATGA+AGG + Chr2:50390293-50390312 MsG0280009325.01.T01:intron 50.0%
AGCTGTCGTAAACGTCTTGC+AGG + Chr2:50389606-50389625 MsG0280009325.01.T01:CDS 50.0%
ATAAAAGCCGAAGGCGGAAC+CGG + Chr2:50391237-50391256 MsG0280009325.01.T01:CDS 50.0%
ATCCAAGGAGGCTCGAATTC+CGG + Chr2:50391420-50391439 MsG0280009325.01.T01:CDS 50.0%
ATCGAAGAGGGTGAGGTCTT+CGG + Chr2:50388647-50388666 MsG0280009325.01.T01:CDS 50.0%
ATCGTCGACACCATCGAAGA+GGG + Chr2:50388635-50388654 MsG0280009325.01.T01:CDS 50.0%
CAGAAGATAAGACCTCACCG+GGG - Chr2:50391185-50391204 None:intergenic 50.0%
CGTCGTAGAAAGCCACAAGT+TGG + Chr2:50389639-50389658 MsG0280009325.01.T01:CDS 50.0%
CGTGTTCTTACCCCGATGAA+GGG + Chr2:50390294-50390313 MsG0280009325.01.T01:intron 50.0%
GAATTCGAGCCTCCTTGGAT+AGG - Chr2:50391420-50391439 None:intergenic 50.0%
GACCGTCTTTCCTGTGAAGA+TGG + Chr2:50391819-50391838 MsG0280009325.01.T01:CDS 50.0%
GCATGGGAATTCCTGTCGAT+TGG - Chr2:50391593-50391612 None:intergenic 50.0%
GCCCATTTCGAAATGGCAGA+TGG + Chr2:50391762-50391781 MsG0280009325.01.T01:CDS 50.0%
GCTATTCCAAGCAGTCTCAC+AGG + Chr2:50390847-50390866 MsG0280009325.01.T01:intron 50.0%
GGGAGGTTGCTTCAGTCATA+TGG + Chr2:50389681-50389700 MsG0280009325.01.T01:CDS 50.0%
TCCAGACGACGACAAAATCG+TGG - Chr2:50388616-50388635 None:intergenic 50.0%
TTCAGCGTGTTGAGCATCAG+AGG + Chr2:50391877-50391896 MsG0280009325.01.T01:CDS 50.0%
TTGATCCAACGGCCACCAAT+GGG - Chr2:50389827-50389846 None:intergenic 50.0%
! AATGGCAGATGGGGTTTTCC+AGG + Chr2:50391773-50391792 MsG0280009325.01.T01:CDS 50.0%
! ACCACGATTTTGTCGTCGTC+TGG + Chr2:50388612-50388631 MsG0280009325.01.T01:CDS 50.0%
! ATGGCAGATGGGGTTTTCCA+GGG + Chr2:50391774-50391793 MsG0280009325.01.T01:CDS 50.0%
! CCCCATCTGCCATTTCGAAA+TGG - Chr2:50391767-50391786 None:intergenic 50.0%
! GTATTGATCGCGGAATGCGT+GGG + Chr2:50389952-50389971 MsG0280009325.01.T01:intron 50.0%
! GTTCCGCCTTCGGCTTTTAT+AGG - Chr2:50391237-50391256 None:intergenic 50.0%
! TGTATTGATCGCGGAATGCG+TGG + Chr2:50389951-50389970 MsG0280009325.01.T01:intron 50.0%
! TTCATTCTGGAAGAGCTGGG+AGG + Chr2:50389664-50389683 MsG0280009325.01.T01:CDS 50.0%
!! TTATCGGGAGTATCAGACGG+TGG + Chr2:50391522-50391541 MsG0280009325.01.T01:CDS 50.0%
ATCCGGAATTCGAGCCTCCT+TGG - Chr2:50391425-50391444 None:intergenic 55.0%
CCAGTCACAACAAGCTGCAC+AGG - Chr2:50392375-50392394 None:intergenic 55.0%
CGTTGACAAAATCCGACCCC+TGG - Chr2:50391794-50391813 None:intergenic 55.0%
CTCGTGAAGCTGACCAATGG+CGG + Chr2:50392499-50392518 MsG0280009325.01.T01:three_prime_UTR 55.0%
CTGAAAGTGGCGTCTCGGAT+AGG + Chr2:50391667-50391686 MsG0280009325.01.T01:CDS 55.0%
CTTGATCCAACGGCCACCAA+TGG - Chr2:50389828-50389847 None:intergenic 55.0%
GAAGACCTCACCCTCTTCGA+TGG - Chr2:50388648-50388667 None:intergenic 55.0%
GATCGTCGACACCATCGAAG+AGG + Chr2:50388634-50388653 MsG0280009325.01.T01:CDS 55.0%
TCGACAGGAATTCCCATGCC+TGG + Chr2:50391594-50391613 MsG0280009325.01.T01:CDS 55.0%
TTCGAGCCTCCTTGGATAGG+AGG - Chr2:50391417-50391436 None:intergenic 55.0%
! AGATGGGGTTTTCCAGGGGT+CGG + Chr2:50391779-50391798 MsG0280009325.01.T01:CDS 55.0%
! ATTAGCCCATTGGTGGCCGT+TGG + Chr2:50389819-50389838 MsG0280009325.01.T01:intron 55.0%
! CCTAAAACCGGTTCCGCCTT+CGG - Chr2:50391247-50391266 None:intergenic 55.0%
! TGGCAGATGGGGTTTTCCAG+GGG + Chr2:50391775-50391794 MsG0280009325.01.T01:CDS 55.0%
!! CCTGTGCAGCTTGTTGTGAC+TGG + Chr2:50392372-50392391 MsG0280009325.01.T01:three_prime_UTR 55.0%
CCAAGAGATACTCCCCGGTG+AGG + Chr2:50391170-50391189 MsG0280009325.01.T01:CDS 60.0%
CGACACCATCGAAGAGGGTG+AGG + Chr2:50388640-50388659 MsG0280009325.01.T01:CDS 60.0%
CGGCTCGTGAAGCTGACCAA+TGG + Chr2:50392496-50392515 MsG0280009325.01.T01:three_prime_UTR 60.0%
GAAGCTGACCAATGGCGGCT+GGG + Chr2:50392504-50392523 MsG0280009325.01.T01:three_prime_UTR 60.0%
TATTGCGTCCCAGCCGCCAT+TGG - Chr2:50392515-50392534 None:intergenic 60.0%
TGAAGCTGACCAATGGCGGC+TGG + Chr2:50392503-50392522 MsG0280009325.01.T01:three_prime_UTR 60.0%
!! CCGAAGGCGGAACCGGTTTT+AGG + Chr2:50391244-50391263 MsG0280009325.01.T01:CDS 60.0%
!! CCTCACCGGGGAGTATCTCT+TGG - Chr2:50391173-50391192 None:intergenic 60.0%
GCATCAGAGGCGAGCCTTGC+AGG + Chr2:50391890-50391909 MsG0280009325.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 50388174 50392748 50388174 ID=MsG0280009325.01;Name=MsG0280009325.01
Chr2 mRNA 50388174 50392748 50388174 ID=MsG0280009325.01.T01;Parent=MsG0280009325.01;Name=MsG0280009325.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0.66|0.75|1|0.66|0.5|4|404|535
Chr2 exon 50388174 50388811 50388174 ID=MsG0280009325.01.T01:exon:6397;Parent=MsG0280009325.01.T01
Chr2 exon 50389569 50389705 50389569 ID=MsG0280009325.01.T01:exon:6398;Parent=MsG0280009325.01.T01
Chr2 exon 50391124 50391970 50391124 ID=MsG0280009325.01.T01:exon:6399;Parent=MsG0280009325.01.T01
Chr2 exon 50392359 50392748 50392359 ID=MsG0280009325.01.T01:exon:6400;Parent=MsG0280009325.01.T01
Chr2 CDS 50388174 50388811 50388174 ID=MsG0280009325.01.T01:cds;Parent=MsG0280009325.01.T01
Chr2 CDS 50389569 50389705 50389569 ID=MsG0280009325.01.T01:cds;Parent=MsG0280009325.01.T01
Chr2 CDS 50391124 50391956 50391124 ID=MsG0280009325.01.T01:cds;Parent=MsG0280009325.01.T01
Chr2 three_prime_UTR 50391957 50391970 50391957 ID=MsG0280009325.01.T01:three_prime_utr;Parent=MsG0280009325.01.T01
Chr2 three_prime_UTR 50392359 50392748 50392359 ID=MsG0280009325.01.T01:three_prime_utr;Parent=MsG0280009325.01.T01
Gene Sequence

>MsG0280009325.01.T01

ATGGAGTCATGGAGTTTTGATCCACAAGATAAAGGGTATGTTTCAAATGACACACTTGGTAGTAGAACCAAAGGTTCAATCTTAGGTTGGGATTTGAAAACCCCATCTAGTTTTTTACCTCAACAAAACATAGAAAATGACAACAATAATCAAGGTTTTGAGGAATTGGGTTTTCATGGTATGTTGGGAAAACAATTGTCTAATGTTGTTGATGATGATGATGATGATGTTGTTGTTGGTAACAAAATTGTCACTAGTAGTTCTTTTGTTATGGCTGCACCAAATGCATTTTCAGAAAGAGAACAACAACACTTCAATTCCAAGCCCAAGCATTCAAACTCAATAGGTGACACTAATAGTTCTAATTCACTCATTGATTTGAAGCTTGGTAGATTTGGTGATCATAGAGATGGAATTGGTACACCATTTTCAAAGGGGACCACGATTTTGTCGTCGTCTGGATCGTCGACACCATCGAAGAGGGTGAGGTCTTCGGCAGTCCATTCTCAGATTGCTTACTGCCAAGTATATGGATGTAATAAGGATTTGAGTGGTTGTAAAGATTATCACAAGAGGCATAAAGTTTGTGAAGTTCATTCAAAGACTTCTAAAGTAATAGTGAATGGAATTGAACAAAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGTCTTGCAGGCCATAATGAGCGTCGTAGAAAGCCACAAGTTGGTATTCATTCTGGAAGAGCTGGGAGGTTGCTTCAGTCATATGGGGATAGTAGATTCCAAGGAACCATGCTAACATCAGCATCTTTTATATGCCAAGAGATACTCCCCGGTGAGGTCTTATCTTCTGAGAAATGTGGAAATAGTAACTGGTGCAGACCTATAAAAGCCGAAGGCGGAACCGGTTTTAGGCCTCTTTCTTCTATTCCAATTATAAATGCACATCCTCATTCAAGAACCCTGTTTCCTTCGTACAACAATAAACAATTTCCTTTCCTTCAAGAAAATGGTGCTACATCTGCTACTGGAAGCATCTTCTGTGAAAACAGTAGTCAATATCCTCCTATCCAAGGAGGCTCGAATTCCGGATCACAATCATTATTCCAAGATACCTCCTTAGGAAGTGAAGACTTCAATGTTTTTGAAACAGAATCAGCTGTTCAAGGATTATCGGGAGTATCAGACGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAATTCTTCAAGCCAATCGACAGGAATTCCCATGCCTGGTCATTTAGTTATTCCGAGCAGCCATAGCCATTATAGCATGAGTCATGTTTCTGAAAGTGGCGTCTCGGATAGGTTTCCGTCTGAGTTAAATCATACGGATGGAAGTCATCTTAGTCCTATATTAATATCAAACAGTAATGAAATTGCCCATTTCGAAATGGCAGATGGGGTTTTCCAGGGGTCGGATTTTGTCAACGTGAAAGACCGTCTTTCCTGTGAAGATGGCACGACCATTGACTTGCTTCAACTGTCGTCACAACTTCAGCGTGTTGAGCATCAGAGGCGAGCCTTGCAGGTGAAGCGAGAAAATGATTCTTCCTGCTCTCTACGGATTACGTAA
Protein sequence

>MsG0280009325.01.T01

MESWSFDPQDKGYVSNDTLGSRTKGSILGWDLKTPSSFLPQQNIENDNNNQGFEELGFHGMLGKQLSNVVDDDDDDVVVGNKIVTSSSFVMAAPNAFSEREQQHFNSKPKHSNSIGDTNSSNSLIDLKLGRFGDHRDGIGTPFSKGTTILSSSGSSTPSKRVRSSAVHSQIAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYGDSRFQGTMLTSASFICQEILPGEVLSSEKCGNSNWCRPIKAEGGTGFRPLSSIPIINAHPHSRTLFPSYNNKQFPFLQENGATSATGSIFCENSSQYPPIQGGSNSGSQSLFQDTSLGSEDFNVFETESAVQGLSGVSDGGCALSLLSSQSQNSSSQSTGIPMPGHLVIPSSHSHYSMSHVSESGVSDRFPSELNHTDGSHLSPILISNSNEIAHFEMADGVFQGSDFVNVKDRLSCEDGTTIDLLQLSSQLQRVEHQRRALQVKRENDSSCSLRIT*