AlfalfaGEDB | MsG0580024435.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024435.01

KEGG: K22013
GO: -
PFAM: PF12638

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024435.01.T01	AEE00202.1	98.718	156	2	0	33	188	108	263	4.82E-110	325
MsG0580024435.01.T01	AEE00202.1	94.444	36	2	0	1	36	1	36	1.42E-11	72.8

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024435.01.T01	A7VLV1	85.161	155	20	1	33	187	108	259	9.29E-95	279

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024435.01.T01	F8TCY0	98.718	156	2	0	33	188	108	263	2.30e-110	325

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048938.01	MsG0580024435.01	0.851918	6.488709e-61	1.333439e-57
MsG0180000627.01	MsG0580024435.01	0.808926	2.436593e-50	1.411075e-47
MsG0180000784.01	MsG0580024435.01	0.806688	7.285187e-50	3.979439e-47
MsG0180000814.01	MsG0580024435.01	0.868247	7.525376e-66	2.703480e-62
MsG0180001100.01	MsG0580024435.01	0.820572	6.390060e-53	5.074780e-50
MsG0180001207.01	MsG0580024435.01	0.818947	1.502506e-52	1.140730e-49
MsG0180001523.01	MsG0580024435.01	0.831216	1.892473e-55	2.040143e-52
MsG0180001888.01	MsG0580024435.01	0.804638	1.962269e-49	1.016962e-46
MsG0180005339.01	MsG0580024435.01	0.812489	4.131490e-51	2.630539e-48
MsG0180006054.01	MsG0580024435.01	0.801984	6.955264e-49	3.367730e-46
MsG0280010945.01	MsG0580024435.01	0.833462	5.259953e-56	6.061623e-53
MsG0380013342.01	MsG0580024435.01	0.827230	1.754878e-54	1.683890e-51
MsG0380013504.01	MsG0580024435.01	0.808013	3.814407e-50	2.156706e-47
MsG0380014277.01	MsG0580024435.01	0.831235	1.872735e-55	2.019913e-52
MsG0380014517.01	MsG0580024435.01	0.836682	8.112396e-57	1.029846e-53
MsG0480018848.01	MsG0580024435.01	0.813556	2.410830e-51	1.579440e-48
MsG0480019065.01	MsG0580024435.01	0.800544	1.371281e-48	6.402228e-46
MsG0480020322.01	MsG0580024435.01	0.855828	4.855467e-62	1.135611e-58
MsG0480020323.01	MsG0580024435.01	0.848559	5.674720e-60	1.045471e-56
MsG0480020689.01	MsG0580024435.01	0.811534	6.673983e-51	4.141760e-48
MsG0480021564.01	MsG0580024435.01	0.846447	2.159709e-59	3.718740e-56
MsG0480021690.01	MsG0580024435.01	0.838043	3.635703e-57	4.811627e-54
MsG0480022166.01	MsG0580024435.01	0.814639	1.390705e-51	9.382450e-49
MsG0480022489.01	MsG0580024435.01	-0.802122	6.517619e-49	3.166970e-46
MsG0480022617.01	MsG0580024435.01	0.800874	1.174593e-48	5.530141e-46
MsG0480022918.01	MsG0580024435.01	0.825843	3.756723e-54	3.464253e-51
MsG0480023044.01	MsG0580024435.01	0.812562	3.983438e-51	2.541055e-48
MsG0480023045.01	MsG0580024435.01	0.814436	1.542373e-51	1.034889e-48
MsG0480023641.01	MsG0580024435.01	0.813132	2.988125e-51	1.935062e-48
MsG0580024328.01	MsG0580024435.01	0.805076	1.589673e-49	8.332291e-47
MsG0580024435.01	MsG0580024775.01	0.847472	1.131651e-59	2.013708e-56
MsG0580024435.01	MsG0580025827.01	0.839596	1.441743e-57	2.000646e-54
MsG0580024435.01	MsG0580025832.01	0.817660	2.938321e-52	2.152921e-49
MsG0580024435.01	MsG0580026304.01	0.852805	3.628021e-61	7.673680e-58
MsG0580024435.01	MsG0580029799.01	0.810866	9.314717e-51	5.679482e-48
MsG0580024435.01	MsG0680031376.01	-0.807997	3.845134e-50	2.173166e-47
MsG0580024435.01	MsG0680031377.01	-0.803168	3.964389e-49	1.978463e-46
MsG0580024435.01	MsG0680031406.01	0.826102	3.261594e-54	3.029607e-51
MsG0580024435.01	MsG0680031562.01	0.801695	7.973835e-49	3.832683e-46
MsG0580024435.01	MsG0680034402.01	0.854944	8.781032e-62	1.994150e-58
MsG0580024435.01	MsG0680035707.01	0.865215	6.938497e-65	2.239623e-61
MsG0580024435.01	MsG0780036593.01	0.815395	9.452588e-52	6.509332e-49
MsG0580024435.01	MsG0780036596.01	0.801895	7.256825e-49	3.506024e-46
MsG0580024435.01	MsG0780036803.01	0.805691	1.181343e-49	6.291013e-47
MsG0580024435.01	MsG0780037848.01	0.801624	8.248807e-49	3.957643e-46
MsG0580024435.01	MsG0780040177.01	0.857520	1.543354e-62	3.819892e-59
MsG0580024435.01	MsG0780040518.01	0.804693	1.910699e-49	9.916882e-47
MsG0580024435.01	MsG0780040559.01	-0.829783	4.242863e-55	4.386996e-52
MsG0580024435.01	MsG0780041015.01	-0.814701	1.347284e-51	9.104607e-49
MsG0580024435.01	MsG0780041080.01	0.815474	9.074401e-52	6.263035e-49
MsG0580024435.01	MsG0780041187.01	0.816000	6.929744e-52	4.851821e-49
MsG0580024435.01	MsG0780041191.01	0.888048	8.336666e-73	6.354905e-69
MsG0580024435.01	MsG0780041301.01	0.886520	3.183401e-72	2.281501e-68
MsG0580024435.01	MsG0880041852.01	0.814597	1.420464e-51	9.572366e-49
MsG0580024435.01	MsG0880042000.01	0.815762	7.827609e-52	5.445282e-49
MsG0580024435.01	MsG0880042988.01	0.834370	3.117482e-56	3.692151e-53
MsG0580024435.01	MsG0880043157.01	0.811105	8.266527e-51	5.072344e-48
MsG0580024435.01	MsG0880045285.01	0.848695	5.202097e-60	9.627111e-57
MsG0580024435.01	MsG0880045783.01	0.861026	1.369205e-63	3.819247e-60
MsG0580024435.01	MsG0880045992.01	0.820398	7.004484e-53	5.536496e-50
MsG0580024435.01	MsG0880046334.01	-0.814081	1.846927e-51	1.227325e-48
MsG0580024435.01	MsG0880047045.01	0.856337	3.443996e-62	8.192861e-59
MsG0580024435.01	MsG0880047046.01	0.856254	3.642503e-62	8.640083e-59
MsG0380015362.01	MsG0580024435.01	0.820519	6.573145e-53	5.212351e-50
MsG0380015847.01	MsG0580024435.01	-0.865136	7.348549e-65	2.365331e-61
MsG0380016182.01	MsG0580024435.01	0.803594	3.235572e-49	1.632553e-46
MsG0380016520.01	MsG0580024435.01	0.800505	1.396747e-48	6.514552e-46
MsG0380016527.01	MsG0580024435.01	0.831293	1.811932e-55	1.957685e-52
MsG0380017048.01	MsG0580024435.01	0.805136	1.544518e-49	8.108178e-47
MsG0380017066.01	MsG0580024435.01	0.800371	1.487185e-48	6.913181e-46
MsG0380017293.01	MsG0580024435.01	0.806366	8.518220e-50	4.614864e-47
MsG0380017934.01	MsG0580024435.01	0.844185	8.840784e-59	1.416102e-55
MsG0480018226.01	MsG0580024435.01	0.817269	3.599148e-52	2.608876e-49
MsG0480018232.01	MsG0580024435.01	0.806813	6.854588e-50	3.756536e-47
MsG0480018236.01	MsG0580024435.01	0.835250	1.871988e-56	2.276495e-53
MsG0280007417.01	MsG0580024435.01	0.817993	2.471195e-52	1.827276e-49
MsG0280007877.01	MsG0580024435.01	0.805505	1.292648e-49	6.850280e-47
MsG0280007946.01	MsG0580024435.01	0.839809	1.268729e-57	1.772217e-54
MsG0280007947.01	MsG0580024435.01	0.864640	1.051274e-64	3.324891e-61
MsG0280008072.01	MsG0580024435.01	0.817422	3.325479e-52	2.420837e-49
MsG0280008114.01	MsG0580024435.01	0.825846	3.751416e-54	3.459608e-51
MsG0280008139.01	MsG0580024435.01	0.803955	2.722253e-49	1.386373e-46
MsG0280008715.01	MsG0580024435.01	0.856631	2.822905e-62	6.780153e-59
MsG0280008717.01	MsG0580024435.01	0.877645	5.321621e-69	2.696257e-65
MsG0280009325.01	MsG0580024435.01	0.808848	2.531355e-50	1.462958e-47
MsG0280009507.01	MsG0580024435.01	0.800124	1.669543e-48	7.712142e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024435.01.T01	MTR_5g011120	96.154	156	6	0	33	188	108	263	6.34e-112	320
MsG0580024435.01.T01	MTR_5g011120	94.444	36	2	0	1	36	1	36	1.75e-15	72.8
MsG0580024435.01.T01	MTR_3g088795	50.467	107	52	1	31	137	116	221	1.13e-31	115

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024435.01.T01	AT4G22920	64.935	154	46	3	33	185	112	258	1.98e-67	207
MsG0580024435.01.T01	AT4G22920	64.935	154	46	3	33	185	112	258	1.98e-67	207
MsG0580024435.01.T01	AT4G11910	58.170	153	61	3	33	182	108	260	1.07e-56	180
MsG0580024435.01.T01	AT4G11911	64.394	132	46	1	33	164	68	198	7.48e-56	176
MsG0580024435.01.T01	AT4G11911	64.394	132	46	1	33	164	108	238	1.26e-55	177
MsG0580024435.01.T01	AT1G44000	54.206	107	47	1	35	141	130	234	1.44e-37	130

Find 62 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCCATAACCGTCTTCTATT+TGG	0.148851	5:-4962086	None:intergenic
CATTCTACCTTCTTGAATTC+TGG	0.156627	5:-4964009	None:intergenic
CCAAAGGGACCACCAAAATT+TGG	0.219438	5:+4964074	MsG0580024435.01.T01:CDS
ATTTACATTGAAAAGGGTTT+TGG	0.242894	5:-4964294	None:intergenic
ACCAATGCTTCCTGTAATTC+AGG	0.279537	5:-4963961	None:intergenic
GCTGAGGTAGGGCCAAATTT+TGG	0.301168	5:-4964086	None:intergenic
TTAATTGAAGTGTTGTTTCA+TGG	0.306037	5:+4964493	MsG0580024435.01.T01:three_prime_UTR
CACCAACTATCCTGAATTAC+AGG	0.327258	5:+4963951	MsG0580024435.01.T01:CDS
TGAGTTTCAATTCCATCAAT+AGG	0.352407	5:-4964198	None:intergenic
TTCTTATATTTACATTGAAA+AGG	0.368902	5:-4964301	None:intergenic
GGTTGGGAAGCCTCCTTTAG+TGG	0.373904	5:-4964039	None:intergenic
ATTCAAGAAGGTAGAATGTT+GGG	0.383024	5:+4964014	MsG0580024435.01.T01:CDS
GATACTTATGAACCTATTGA+TGG	0.400985	5:+4964186	MsG0580024435.01.T01:CDS
TTGGGTCCCACTAGTAGGTT+GGG	0.401919	5:-4964055	None:intergenic
CATGTTCATTGTCACATTAG+TGG	0.407387	5:+4962659	MsG0580024435.01.T01:CDS
TGATTTGGTTTAGGTATTGA+AGG	0.414490	5:+4963900	MsG0580024435.01.T01:intron
AATTACAGGAAGCATTGGTT+TGG	0.424733	5:+4963965	MsG0580024435.01.T01:CDS
ATTACAGGAAGCATTGGTTT+GGG	0.429267	5:+4963966	MsG0580024435.01.T01:CDS
TCCCTTTGGGTCCCACTAGT+AGG	0.437715	5:-4964060	None:intergenic
AGGTTTATGTTGAGGTGAAA+AGG	0.439529	5:-4962057	None:intergenic
ACCTCATTAGAGCACGGCAT+TGG	0.445650	5:-4964156	None:intergenic
TTCCTGTAATTCAGGATAGT+TGG	0.452404	5:-4963953	None:intergenic
CCTCATTAGAGCACGGCATT+GGG	0.453522	5:-4964155	None:intergenic
TCCTGAATTACAGGAAGCAT+TGG	0.454594	5:+4963960	MsG0580024435.01.T01:CDS
CAATGGTCTATTCAATTCCT+AGG	0.455657	5:-4964428	None:intergenic
TCTTATATTTACATTGAAAA+GGG	0.457222	5:-4964300	None:intergenic
TTTGGGTCCCACTAGTAGGT+TGG	0.459521	5:-4964056	None:intergenic
AACTTAGAAGTGAGCATAGG+AGG	0.493060	5:-4962026	None:intergenic
CAATGTAAATATAAGAAAAG+TGG	0.494441	5:+4964307	MsG0580024435.01.T01:three_prime_UTR
TTCTTGACATGGCTGAGGTA+GGG	0.498887	5:-4964097	None:intergenic
GTTCATTGTCACATTAGTGG+TGG	0.513491	5:+4962662	MsG0580024435.01.T01:CDS
AGAATGTTGGGGTCCACTAA+AGG	0.517602	5:+4964026	MsG0580024435.01.T01:CDS
ATGGTATAATAGATTGCAAA+GGG	0.522358	5:+4962589	MsG0580024435.01.T01:intron
CCCAATGCCGTGCTCTAATG+AGG	0.522660	5:+4964155	MsG0580024435.01.T01:CDS
ACCTACTAGTGGGACCCAAA+GGG	0.523997	5:+4964059	MsG0580024435.01.T01:CDS
TTTCTTGACATGGCTGAGGT+AGG	0.526253	5:-4964098	None:intergenic
TTATGTTGAGGTGAAAAGGA+AGG	0.536070	5:-4962053	None:intergenic
GGCATTGGGCTCAACTTCAA+CGG	0.552318	5:-4964141	None:intergenic
AACCTACTAGTGGGACCCAA+AGG	0.558097	5:+4964058	MsG0580024435.01.T01:CDS
TTCATTGTCACATTAGTGGT+GGG	0.562741	5:+4962663	MsG0580024435.01.T01:CDS
CACTAATGTGACAATGAACA+TGG	0.571160	5:-4962658	None:intergenic
AAAGATTCCAGAATTCAAGA+AGG	0.574918	5:+4964002	MsG0580024435.01.T01:CDS
AATTCAAGAAGGTAGAATGT+TGG	0.577576	5:+4964013	MsG0580024435.01.T01:CDS
TTGAACTTAGAAGTGAGCAT+AGG	0.579985	5:-4962029	None:intergenic
GAGCATAGGAGGAGGAGCAG+TGG	0.585361	5:-4962015	None:intergenic
TCTATACGTTGCTCATTGTG+AGG	0.590137	5:+4964265	MsG0580024435.01.T01:three_prime_UTR
TTAGAAGTGAGCATAGGAGG+AGG	0.595572	5:-4962023	None:intergenic
AGTTGTGGCGCAGTGGAAGA+AGG	0.597675	5:+4962616	MsG0580024435.01.T01:CDS
ATTGCAAAGGGATGAAGTTG+TGG	0.601150	5:+4962601	MsG0580024435.01.T01:CDS
TTCAAGAAGGTAGAATGTTG+GGG	0.609386	5:+4964015	MsG0580024435.01.T01:CDS
GAGGCTTCCCAACCTACTAG+TGG	0.619748	5:+4964048	MsG0580024435.01.T01:CDS
GGCGCAGTGGAAGAAGGTGA+AGG	0.625074	5:+4962622	MsG0580024435.01.T01:CDS
GCGCAGTGGAAGAAGGTGAA+GGG	0.627737	5:+4962623	MsG0580024435.01.T01:CDS
GGGATGAAGTTGTGGCGCAG+TGG	0.632593	5:+4962609	MsG0580024435.01.T01:CDS
GATGGTATAATAGATTGCAA+AGG	0.636493	5:+4962588	MsG0580024435.01.T01:intron
ATTGGGCTCAACTTCAACGG+TGG	0.639681	5:-4964138	None:intergenic
AGGCTTCCCAACCTACTAGT+GGG	0.640121	5:+4964049	MsG0580024435.01.T01:CDS
ATGTTGGGGTCCACTAAAGG+AGG	0.649589	5:+4964029	MsG0580024435.01.T01:CDS
TTGTGAACCTCATTAGAGCA+CGG	0.658169	5:-4964162	None:intergenic
GAATTGAATAGACCATTGCA+AGG	0.661013	5:+4964433	MsG0580024435.01.T01:three_prime_UTR
TAAGAAATGAGACTTTCGTG+TGG	0.719120	5:-4964241	None:intergenic
CTTCTGCAAAGAGTTACCCG+TGG	0.735433	5:+4962727	MsG0580024435.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAATAATAAATATTGCAT+TGG	+	Chr5:4963660-4963679	MsG0580024435.01.T01:intron	10.0%
!!	TTAAGTTTGATAAAATATAA+GGG	+	Chr5:4963625-4963644	MsG0580024435.01.T01:intron	10.0%
!!!	AAAAATCAATATTGAATTTT+AGG	+	Chr5:4962521-4962540	MsG0580024435.01.T01:intron	10.0%
!!!	GATTTTAATTCATAAAAATT+AGG	+	Chr5:4964371-4964390	MsG0580024435.01.T01:three_prime_UTR	10.0%
!!	AATTTAGAAAGATTAAAGAA+AGG	+	Chr5:4962153-4962172	MsG0580024435.01.T01:intron	15.0%
!!	CAATTCAAATGAAAAAAAAT+TGG	-	Chr5:4963180-4963199	None:intergenic	15.0%
!!	CTAAATTTAAACTACATATA+TGG	+	Chr5:4963091-4963110	MsG0580024435.01.T01:intron	15.0%
!!	GTTAAGTTTGATAAAATATA+AGG	+	Chr5:4963624-4963643	MsG0580024435.01.T01:intron	15.0%
!!	TCTTATATTTACATTGAAAA+GGG	-	Chr5:4964303-4964322	None:intergenic	15.0%
!!	TTCTTATATTTACATTGAAA+AGG	-	Chr5:4964304-4964323	None:intergenic	15.0%
!!!	AAAATATAAGGGTATAATAA+AGG	+	Chr5:4963636-4963655	MsG0580024435.01.T01:intron	15.0%
!!!	AATAAAAAAGTATACAAACT+TGG	+	Chr5:4962544-4962563	MsG0580024435.01.T01:intron	15.0%
!!!	ATAAAAAAGTATACAAACTT+GGG	+	Chr5:4962545-4962564	MsG0580024435.01.T01:intron	15.0%
!!!	ATTTTGAGAAAATGAAAAAA+TGG	+	Chr5:4963701-4963720	MsG0580024435.01.T01:intron	15.0%
!!	AAACAACTATTATTTAGAGA+CGG	-	Chr5:4963499-4963518	None:intergenic	20.0%
!!	CAATGTAAATATAAGAAAAG+TGG	+	Chr5:4964307-4964326	MsG0580024435.01.T01:three_prime_UTR	20.0%
!!	CAATTCAAATGATAAAAAGT+TGG	-	Chr5:4963772-4963791	None:intergenic	20.0%
!!	GACATGAAAAATATATGATT+AGG	+	Chr5:4963808-4963827	MsG0580024435.01.T01:intron	20.0%
!!	TAAAATCCCCTATTAATTTA+GGG	+	Chr5:4963316-4963335	MsG0580024435.01.T01:intron	20.0%
!!	TATTGAAAAAACTCACAAAT+TGG	-	Chr5:4963281-4963300	None:intergenic	20.0%
!!	TTAAAACCCACTATTAATTA+AGG	-	Chr5:4963379-4963398	None:intergenic	20.0%
!!	TTAAAATCCCCTATTAATTT+AGG	+	Chr5:4963315-4963334	MsG0580024435.01.T01:intron	20.0%
!!	TTAACAATATGTGTTTGATT+TGG	+	Chr5:4963885-4963904	MsG0580024435.01.T01:intron	20.0%
!!!	TACAATTAATAAGGGTATTT+TGG	-	Chr5:4963592-4963611	None:intergenic	20.0%
!!!	TTTTCACCTTAATTAATAGT+GGG	+	Chr5:4963370-4963389	MsG0580024435.01.T01:intron	20.0%
!	AAAATCCCCTATTAATTTAG+GGG	+	Chr5:4963317-4963336	MsG0580024435.01.T01:intron	25.0%
!	AAATACCTGAGAGTTATTAA+TGG	-	Chr5:4962394-4962413	None:intergenic	25.0%
!	AACCTACTATCAATCAATTA+AGG	-	Chr5:4963051-4963070	None:intergenic	25.0%
!	AAGTTTGTGCATGATTATTA+AGG	+	Chr5:4963520-4963539	MsG0580024435.01.T01:intron	25.0%
!	ATGGTATAATAGATTGCAAA+GGG	+	Chr5:4962589-4962608	MsG0580024435.01.T01:intron	25.0%
!	ATTTGGTCAACAAATTATCA+AGG	+	Chr5:4963127-4963146	MsG0580024435.01.T01:intron	25.0%
!	CCACTAACTACAATTAATAA+GGG	-	Chr5:4963600-4963619	None:intergenic	25.0%
!	CTAAAACCCCTAAATTAATA+GGG	-	Chr5:4963326-4963345	None:intergenic	25.0%
!	GAGACATGACTAATATAATT+AGG	+	Chr5:4963214-4963233	MsG0580024435.01.T01:intron	25.0%
!	TAAAAAAGGTAAAGTAAGTG+TGG	-	Chr5:4962887-4962906	None:intergenic	25.0%
!	TAAAACCCCTAAATTAATAG+GGG	-	Chr5:4963325-4963344	None:intergenic	25.0%
!	TAAGGTGAAAATTCATATTG+AGG	-	Chr5:4963033-4963052	None:intergenic	25.0%
!	TATGACAATACTTAGCAATT+TGG	+	Chr5:4963433-4963452	MsG0580024435.01.T01:intron	25.0%
!	TATTTCGGATCTTGTAAAAA+AGG	-	Chr5:4962901-4962920	None:intergenic	25.0%
!	TCCACTAACTACAATTAATA+AGG	-	Chr5:4963601-4963620	None:intergenic	25.0%
!	TTACTTCCATCAAATGATTA+GGG	-	Chr5:4962460-4962479	None:intergenic	25.0%
!	TTTGGTCAACAAATTATCAA+GGG	+	Chr5:4963128-4963147	MsG0580024435.01.T01:intron	25.0%
!!	ATTTACATTGAAAAGGGTTT+TGG	-	Chr5:4964297-4964316	None:intergenic	25.0%
!!	ATTTGAAGCATCAAAATTGA+AGG	+	Chr5:4962261-4962280	MsG0580024435.01.T01:intron	25.0%
!!	GTTTTCACCTTAATTAATAG+TGG	+	Chr5:4963369-4963388	MsG0580024435.01.T01:intron	25.0%
!!	TCTAAAACCCCTAAATTAAT+AGG	-	Chr5:4963327-4963346	None:intergenic	25.0%
!!	TGATTTGACTTTCTATTTGT+GGG	+	Chr5:4962190-4962209	MsG0580024435.01.T01:intron	25.0%
!!	TTGATTTGACTTTCTATTTG+TGG	+	Chr5:4962189-4962208	MsG0580024435.01.T01:intron	25.0%
!!!	AAATTGAAGGTTTTGTTCTT+AGG	+	Chr5:4962274-4962293	MsG0580024435.01.T01:intron	25.0%
!!!	AGTTTTTTCAATACGTACAA+AGG	+	Chr5:4963288-4963307	MsG0580024435.01.T01:intron	25.0%
!!!	ATAATTTGTTGACCAAATTG+CGG	-	Chr5:4963125-4963144	None:intergenic	25.0%
!!!	ATATGTGTTTGATTTGGTTT+AGG	+	Chr5:4963891-4963910	MsG0580024435.01.T01:intron	25.0%
!!!	ATTAATCGTGTTGATTTTGA+TGG	+	Chr5:4963548-4963567	MsG0580024435.01.T01:intron	25.0%
!!!	GTAAACAAGTATTTTTACCT+AGG	+	Chr5:4964411-4964430	MsG0580024435.01.T01:three_prime_UTR	25.0%
	AAAAAAAGACATGCTTACCA+CGG	-	Chr5:4962747-4962766	None:intergenic	30.0%
	AAAGAGAAAGAAACACATAC+AGG	-	Chr5:4962129-4962148	None:intergenic	30.0%
	AAAGATTCCAGAATTCAAGA+AGG	+	Chr5:4964002-4964021	MsG0580024435.01.T01:CDS	30.0%
	AACTATTATTTAGAGACGGA+GGG	-	Chr5:4963495-4963514	None:intergenic	30.0%
	AAGAGACAATTATTGTGAGA+CGG	+	Chr5:4963726-4963745	MsG0580024435.01.T01:intron	30.0%
	AATTCAAGAAGGTAGAATGT+TGG	+	Chr5:4964013-4964032	MsG0580024435.01.T01:CDS	30.0%
	ACAAGAAAAAACTCGCAAAT+TGG	-	Chr5:4962939-4962958	None:intergenic	30.0%
	AGTTTGAAAGGGTAAATATG+GGG	+	Chr5:4962828-4962847	MsG0580024435.01.T01:intron	30.0%
	ATCTTTGTACATGTTCCTTA+AGG	-	Chr5:4962963-4962982	None:intergenic	30.0%
	ATTCAAGAAGGTAGAATGTT+GGG	+	Chr5:4964014-4964033	MsG0580024435.01.T01:CDS	30.0%
	CCCTTATTAATTGTAGTTAG+TGG	+	Chr5:4963597-4963616	MsG0580024435.01.T01:intron	30.0%
	CTAAAACCCCTCAATTAATA+GGG	-	Chr5:4962996-4963015	None:intergenic	30.0%
	GAGTTTGAAAGGGTAAATAT+GGG	+	Chr5:4962827-4962846	MsG0580024435.01.T01:intron	30.0%
	GATACTTATGAACCTATTGA+TGG	+	Chr5:4964186-4964205	MsG0580024435.01.T01:CDS	30.0%
	GATGGTATAATAGATTGCAA+AGG	+	Chr5:4962588-4962607	MsG0580024435.01.T01:intron	30.0%
	GCGAATATATCCAACAAAAA+TGG	-	Chr5:4962689-4962708	None:intergenic	30.0%
	GTGAAAATTCATATTGAGGT+GGG	-	Chr5:4963029-4963048	None:intergenic	30.0%
	GTTACTTCCATCAAATGATT+AGG	-	Chr5:4962461-4962480	None:intergenic	30.0%
	TAAAACCCCCTATTAATTGA+GGG	+	Chr5:4962986-4963005	MsG0580024435.01.T01:intron	30.0%
	TAAAACCCCTCAATTAATAG+GGG	-	Chr5:4962995-4963014	None:intergenic	30.0%
	TCAAACCATTAATAACTCTC+AGG	+	Chr5:4962386-4962405	MsG0580024435.01.T01:intron	30.0%
	TGAGTTTCAATTCCATCAAT+AGG	-	Chr5:4964201-4964220	None:intergenic	30.0%
	TGAGTTTGAAAGGGTAAATA+TGG	+	Chr5:4962826-4962845	MsG0580024435.01.T01:intron	30.0%
	TTAAAACCCCCTATTAATTG+AGG	+	Chr5:4962985-4963004	MsG0580024435.01.T01:intron	30.0%
	TTATCATTTGAATTGCACCT+AGG	+	Chr5:4963777-4963796	MsG0580024435.01.T01:intron	30.0%
	TTCATTTGAATTGTACCTAC+CGG	+	Chr5:4963187-4963206	MsG0580024435.01.T01:intron	30.0%
	TTGGTCAACAAATTATCAAG+GGG	+	Chr5:4963129-4963148	MsG0580024435.01.T01:intron	30.0%
	TTTGATGCTTCAAATATAGC+TGG	-	Chr5:4962256-4962275	None:intergenic	30.0%
!	CACCTTAATTGATTGATAGT+AGG	+	Chr5:4963046-4963065	MsG0580024435.01.T01:intron	30.0%
!	CTCTTTTTCCAAATAGAAGA+CGG	+	Chr5:4962078-4962097	MsG0580024435.01.T01:CDS	30.0%
!	TCTAAAACCCCTCAATTAAT+AGG	-	Chr5:4962997-4963016	None:intergenic	30.0%
!!	AAACTCACAAATTGGTCTTT+AGG	-	Chr5:4963273-4963292	None:intergenic	30.0%
!!	TGATTTGGTTTAGGTATTGA+AGG	+	Chr5:4963900-4963919	MsG0580024435.01.T01:intron	30.0%
!!!	GAGTTTTTTCTTGTACCTTA+AGG	+	Chr5:4962945-4962964	MsG0580024435.01.T01:intron	30.0%
	AAAAAAGACATGCTTACCAC+GGG	-	Chr5:4962746-4962765	None:intergenic	35.0%
	AAAACCCCCTATTAATTGAG+GGG	+	Chr5:4962987-4963006	MsG0580024435.01.T01:intron	35.0%
	AAAACCCCTCAATTAATAGG+GGG	-	Chr5:4962994-4963013	None:intergenic	35.0%
	ACACACTTGATGCATGTAAT+AGG	+	Chr5:4962796-4962815	MsG0580024435.01.T01:intron	35.0%
	ACACTTGATGCATGTAATAG+GGG	+	Chr5:4962798-4962817	MsG0580024435.01.T01:intron	35.0%
	AGGTTTATGTTGAGGTGAAA+AGG	-	Chr5:4962060-4962079	None:intergenic	35.0%
	ATTGATGAAGACAAACATCC+AGG	+	Chr5:4962298-4962317	MsG0580024435.01.T01:intron	35.0%
	CAACTATTATTTAGAGACGG+AGG	-	Chr5:4963496-4963515	None:intergenic	35.0%
	CAATGGTCTATTCAATTCCT+AGG	-	Chr5:4964431-4964450	None:intergenic	35.0%
	CACACTTGATGCATGTAATA+GGG	+	Chr5:4962797-4962816	MsG0580024435.01.T01:intron	35.0%
	CACATACAGGAACAATTGAT+TGG	-	Chr5:4962116-4962135	None:intergenic	35.0%
	CACTAATGTGACAATGAACA+TGG	-	Chr5:4962661-4962680	None:intergenic	35.0%
	CATGTTCATTGTCACATTAG+TGG	+	Chr5:4962659-4962678	MsG0580024435.01.T01:CDS	35.0%
	CATTCTACCTTCTTGAATTC+TGG	-	Chr5:4964012-4964031	None:intergenic	35.0%
	CGTCTTCTATTTGGAAAAAG+AGG	-	Chr5:4962080-4962099	None:intergenic	35.0%
	GAATTGAATAGACCATTGCA+AGG	+	Chr5:4964433-4964452	MsG0580024435.01.T01:three_prime_UTR	35.0%
	GGAAAAAGAGGTTTATGTTG+AGG	-	Chr5:4962068-4962087	None:intergenic	35.0%
	GGTGAAAATTCATATTGAGG+TGG	-	Chr5:4963030-4963049	None:intergenic	35.0%
	GTAACAAAACAGAGTTGAAG+AGG	+	Chr5:4962476-4962495	MsG0580024435.01.T01:intron	35.0%
	TAAGAAATGAGACTTTCGTG+TGG	-	Chr5:4964244-4964263	None:intergenic	35.0%
	TATTAGTCATGTCTCATGTC+CGG	-	Chr5:4963209-4963228	None:intergenic	35.0%
	TCCAAATAGAAGACGGTTAT+GGG	+	Chr5:4962085-4962104	MsG0580024435.01.T01:intron	35.0%
	TGACTTTCTATTTGTGGGTT+TGG	+	Chr5:4962195-4962214	MsG0580024435.01.T01:intron	35.0%
	TGTAACCTCAAAACTCACTT+TGG	+	Chr5:4962357-4962376	MsG0580024435.01.T01:intron	35.0%
	TGTCTTCCCTAATCATTTGA+TGG	+	Chr5:4962451-4962470	MsG0580024435.01.T01:intron	35.0%
	TGTGTTAACGTATAAGTCCT+TGG	-	Chr5:4962331-4962350	None:intergenic	35.0%
	TTATGTTGAGGTGAAAAGGA+AGG	-	Chr5:4962056-4962075	None:intergenic	35.0%
	TTCAAGAAGGTAGAATGTTG+GGG	+	Chr5:4964015-4964034	MsG0580024435.01.T01:CDS	35.0%
	TTCATTGTCACATTAGTGGT+GGG	+	Chr5:4962663-4962682	MsG0580024435.01.T01:CDS	35.0%
	TTCCAAATAGAAGACGGTTA+TGG	+	Chr5:4962084-4962103	MsG0580024435.01.T01:intron	35.0%
	TTCCTGTAATTCAGGATAGT+TGG	-	Chr5:4963956-4963975	None:intergenic	35.0%
	TTGAACTTAGAAGTGAGCAT+AGG	-	Chr5:4962032-4962051	None:intergenic	35.0%
!	AATTGCCAAAGTGAGTTTTG+AGG	-	Chr5:4962365-4962384	None:intergenic	35.0%
!	GGGGTATTATGAGTTTGAAA+GGG	+	Chr5:4962817-4962836	MsG0580024435.01.T01:intron	35.0%
!	GTATTGAAGGCTTTTGTACA+CGG	+	Chr5:4963913-4963932	MsG0580024435.01.T01:CDS	35.0%
!	TGCAATTTTGAACCTTGCAA+TGG	-	Chr5:4964448-4964467	None:intergenic	35.0%
!	TTCTATTTGTGGGTTTGGTT+TGG	+	Chr5:4962200-4962219	MsG0580024435.01.T01:intron	35.0%
!!	AATTACAGGAAGCATTGGTT+TGG	+	Chr5:4963965-4963984	MsG0580024435.01.T01:CDS	35.0%
!!	AGGGGTATTATGAGTTTGAA+AGG	+	Chr5:4962816-4962835	MsG0580024435.01.T01:intron	35.0%
!!	ATTACAGGAAGCATTGGTTT+GGG	+	Chr5:4963966-4963985	MsG0580024435.01.T01:CDS	35.0%
!!!	TTTGGTTTGGATTTTGGAAC+AGG	+	Chr5:4962213-4962232	MsG0580024435.01.T01:intron	35.0%
	AACATCCAGGAAATCTTCCA+AGG	+	Chr5:4962311-4962330	MsG0580024435.01.T01:intron	40.0%
	AACTTAGAAGTGAGCATAGG+AGG	-	Chr5:4962029-4962048	None:intergenic	40.0%
	ACCAATGCTTCCTGTAATTC+AGG	-	Chr5:4963964-4963983	None:intergenic	40.0%
	ATGGCAATAACTCCGCAATT+TGG	+	Chr5:4963110-4963129	MsG0580024435.01.T01:intron	40.0%
	ATTGCAAAGGGATGAAGTTG+TGG	+	Chr5:4962601-4962620	MsG0580024435.01.T01:CDS	40.0%
	CACCAACTATCCTGAATTAC+AGG	+	Chr5:4963951-4963970	MsG0580024435.01.T01:CDS	40.0%
	GAACAGGTTGCTAGGTTATT+TGG	+	Chr5:4962229-4962248	MsG0580024435.01.T01:intron	40.0%
	GAATTGCACCTAGGAGATAT+GGG	+	Chr5:4963786-4963805	MsG0580024435.01.T01:intron	40.0%
	GACAATTATTGTGAGACGGA+TGG	+	Chr5:4963730-4963749	MsG0580024435.01.T01:intron	40.0%
	GGAATTCAATTGCAGTTGCA+GGG	+	Chr5:4962566-4962585	MsG0580024435.01.T01:intron	40.0%
	GTTCATTGTCACATTAGTGG+TGG	+	Chr5:4962662-4962681	MsG0580024435.01.T01:CDS	40.0%
	TAAGTCCTTGGAAGATTTCC+TGG	-	Chr5:4962319-4962338	None:intergenic	40.0%
	TCCCATAACCGTCTTCTATT+TGG	-	Chr5:4962089-4962108	None:intergenic	40.0%
	TCGCTAGGACAACGATATTT+CGG	-	Chr5:4962916-4962935	None:intergenic	40.0%
	TCTATACGTTGCTCATTGTG+AGG	+	Chr5:4964265-4964284	MsG0580024435.01.T01:three_prime_UTR	40.0%
	TGAATTGCACCTAGGAGATA+TGG	+	Chr5:4963785-4963804	MsG0580024435.01.T01:intron	40.0%
	TTGTGAACCTCATTAGAGCA+CGG	-	Chr5:4964165-4964184	None:intergenic	40.0%
	TTTCATGTCCCATATCTCCT+AGG	-	Chr5:4963797-4963816	None:intergenic	40.0%
!	CAATTTTCTTGACATGGCTG+AGG	-	Chr5:4964105-4964124	None:intergenic	40.0%
!	CACTCGCAATTTTCTTGACA+TGG	-	Chr5:4964111-4964130	None:intergenic	40.0%
!	TCCTGAATTACAGGAAGCAT+TGG	+	Chr5:4963960-4963979	MsG0580024435.01.T01:CDS	40.0%
!!	CAAATTTTGGTGGTCCCTTT+GGG	-	Chr5:4964076-4964095	None:intergenic	40.0%
!!!	TGTGGGTTTGGTTTGGATTT+TGG	+	Chr5:4962207-4962226	MsG0580024435.01.T01:intron	40.0%
	AAACTCGCAAATTGGTCGCT+AGG	-	Chr5:4962931-4962950	None:intergenic	45.0%
	AGAATGTTGGGGTCCACTAA+AGG	+	Chr5:4964026-4964045	MsG0580024435.01.T01:CDS	45.0%
	CCAAAGGGACCACCAAAATT+TGG	+	Chr5:4964074-4964093	MsG0580024435.01.T01:CDS	45.0%
	GGGAATTCAATTGCAGTTGC+AGG	+	Chr5:4962565-4962584	MsG0580024435.01.T01:intron	45.0%
	TTAGAAGTGAGCATAGGAGG+AGG	-	Chr5:4962026-4962045	None:intergenic	45.0%
	TTCAATTGCAGTTGCAGGGA+TGG	+	Chr5:4962570-4962589	MsG0580024435.01.T01:intron	45.0%
	TTCTTGACATGGCTGAGGTA+GGG	-	Chr5:4964100-4964119	None:intergenic	45.0%
	TTTCTTGACATGGCTGAGGT+AGG	-	Chr5:4964101-4964120	None:intergenic	45.0%
!	AAGGCTTTTGTACACGGTGA+CGG	+	Chr5:4963919-4963938	MsG0580024435.01.T01:CDS	45.0%
!!	CCAAATTTTGGTGGTCCCTT+TGG	-	Chr5:4964077-4964096	None:intergenic	45.0%
!!!	GGATTTTGGAACAGGTTGCT+AGG	+	Chr5:4962221-4962240	MsG0580024435.01.T01:intron	45.0%
!!!	TAGTGGTGGGCCATTTTTGT+TGG	+	Chr5:4962676-4962695	MsG0580024435.01.T01:CDS	45.0%
!!!	TTTTTATTTTACTTTTTTTT+TGG	+	Chr5:4964343-4964362	MsG0580024435.01.T01:three_prime_UTR	5.0%
	AACCTACTAGTGGGACCCAA+AGG	+	Chr5:4964058-4964077	MsG0580024435.01.T01:CDS	50.0%
	ACCTACTAGTGGGACCCAAA+GGG	+	Chr5:4964059-4964078	MsG0580024435.01.T01:CDS	50.0%
	ACCTCATTAGAGCACGGCAT+TGG	-	Chr5:4964159-4964178	None:intergenic	50.0%
	AGGCTTCCCAACCTACTAGT+GGG	+	Chr5:4964049-4964068	MsG0580024435.01.T01:CDS	50.0%
	AGTCATGTCTCATGTCCGGT+AGG	-	Chr5:4963205-4963224	None:intergenic	50.0%
	ATGTTGGGGTCCACTAAAGG+AGG	+	Chr5:4964029-4964048	MsG0580024435.01.T01:CDS	50.0%
	ATTGGGCTCAACTTCAACGG+TGG	-	Chr5:4964141-4964160	None:intergenic	50.0%
	CCTCATTAGAGCACGGCATT+GGG	-	Chr5:4964158-4964177	None:intergenic	50.0%
	CTTCTGCAAAGAGTTACCCG+TGG	+	Chr5:4962727-4962746	MsG0580024435.01.T01:CDS	50.0%
	TTGGGTCCCACTAGTAGGTT+GGG	-	Chr5:4964058-4964077	None:intergenic	50.0%
	TTTGGGTCCCACTAGTAGGT+TGG	-	Chr5:4964059-4964078	None:intergenic	50.0%
!	GAGGTAGGGCCAAATTTTGG+TGG	-	Chr5:4964086-4964105	None:intergenic	50.0%
!	GCTGAGGTAGGGCCAAATTT+TGG	-	Chr5:4964089-4964108	None:intergenic	50.0%
!	GGCATTGGGCTCAACTTCAA+CGG	-	Chr5:4964144-4964163	None:intergenic	50.0%
	AGTTGTGGCGCAGTGGAAGA+AGG	+	Chr5:4962616-4962635	MsG0580024435.01.T01:CDS	55.0%
	CCCAATGCCGTGCTCTAATG+AGG	+	Chr5:4964155-4964174	MsG0580024435.01.T01:CDS	55.0%
	GAGGCTTCCCAACCTACTAG+TGG	+	Chr5:4964048-4964067	MsG0580024435.01.T01:CDS	55.0%
	GCGCAGTGGAAGAAGGTGAA+GGG	+	Chr5:4962623-4962642	MsG0580024435.01.T01:CDS	55.0%
	GGTTGGGAAGCCTCCTTTAG+TGG	-	Chr5:4964042-4964061	None:intergenic	55.0%
	TCCCTTTGGGTCCCACTAGT+AGG	-	Chr5:4964063-4964082	None:intergenic	55.0%
	GAGCATAGGAGGAGGAGCAG+TGG	-	Chr5:4962018-4962037	None:intergenic	60.0%
	GGCGCAGTGGAAGAAGGTGA+AGG	+	Chr5:4962622-4962641	MsG0580024435.01.T01:CDS	60.0%
	GGGATGAAGTTGTGGCGCAG+TGG	+	Chr5:4962609-4962628	MsG0580024435.01.T01:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	4962002	4964513	4962002	ID=MsG0580024435.01;Name=MsG0580024435.01
Chr5	mRNA	4962002	4964513	4962002	ID=MsG0580024435.01.T01;Parent=MsG0580024435.01;Name=MsG0580024435.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|280\|188
Chr5	exon	4962002	4962099	4962002	ID=MsG0580024435.01.T01:exon:18985;Parent=MsG0580024435.01.T01
Chr5	exon	4962601	4962748	4962601	ID=MsG0580024435.01.T01:exon:18986;Parent=MsG0580024435.01.T01
Chr5	exon	4963913	4964513	4963913	ID=MsG0580024435.01.T01:exon:18987;Parent=MsG0580024435.01.T01
Chr5	CDS	4962002	4962099	4962002	ID=MsG0580024435.01.T01:cds;Parent=MsG0580024435.01.T01
Chr5	CDS	4962601	4962748	4962601	ID=MsG0580024435.01.T01:cds;Parent=MsG0580024435.01.T01
Chr5	CDS	4963913	4964233	4963913	ID=MsG0580024435.01.T01:cds;Parent=MsG0580024435.01.T01
Chr5	three_prime_UTR	4964234	4964513	4964234	ID=MsG0580024435.01.T01:three_prime_utr;Parent=MsG0580024435.01.T01

Gene Sequence

>MsG0580024435.01.T01

ATGGGTACTCTAACCACTGCTCCTCCTCCTATGCTCACTTCTAAGTTCAAACCTTCCTTTTCACCTCAACATAAACCTCTTTTTCCAAATAGAAGACGATTGCAAAGGGATGAAGTTGTGGCGCAGTGGAAGAAGGTGAAGGGAAAGATGTCTCTCCATGTTCATTGTCACATTAGTGGTGGGCCATTTTTGTTGGATATATTCGCTAGATTAAGATATTTCATCTTCTGCAAAGAGTTACCCGTGGTATTGAAGGCTTTTGTACACGGTGACGGCAATTTATTCACCAACTATCCTGAATTACAGGAAGCATTGGTTTGGGTATATTTTCATTCAAAGATTCCAGAATTCAAGAAGGTAGAATGTTGGGGTCCACTAAAGGAGGCTTCCCAACCTACTAGTGGGACCCAAAGGGACCACCAAAATTTGGCCCTACCTCAGCCATGTCAAGAAAATTGCGAGTGCTGCTTTCCACCGTTGAAGTTGAGCCCAATGCCGTGCTCTAATGAGGTTCACAATGATACTTATGAACCTATTGATGGAATTGAAACTCAACAATCACTGTAA

Protein sequence

>MsG0580024435.01.T01

MGTLTTAPPPMLTSKFKPSFSPQHKPLFPNRRRLQRDEVVAQWKKVKGKMSLHVHCHISGGPFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLFTNYPELQEALVWVYFHSKIPEFKKVECWGPLKEASQPTSGTQRDHQNLALPQPCQENCECCFPPLKLSPMPCSNEVHNDTYEPIDGIETQQSL*