AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009335.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009335.01.T01 MTR_6g047800 97.735 309 6 1 1 308 1 309 0.0 623
MsG0280009335.01.T01 MTR_6g047800 97.667 300 6 1 10 308 1 300 0.0 605
MsG0280009335.01.T01 MTR_2g014590 77.489 231 52 0 1 231 2 232 3.92e-137 388
MsG0280009335.01.T01 MTR_2g014570 70.968 62 13 3 246 307 6 62 6.39e-19 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009335.01.T01 AT5G14600 73.333 315 77 2 1 308 1 315 8.60e-175 486

Find 109 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTTGTTGTTATGTATT+TGG 0.132518 2:-50509334 MsG0280009335.01.T01:CDS
ACATTCATGTGGAAGGTTTC+TGG 0.180697 2:-50507116 MsG0280009335.01.T01:three_prime_UTR
AGTCATTACTTACAACAATT+AGG 0.227413 2:+50511045 None:intergenic
TCCTAATTCTTCTTCTGTTA+TGG 0.259735 2:-50507287 MsG0280009335.01.T01:CDS
AACAATTAGTAACGGTGATT+TGG 0.271982 2:-50509583 MsG0280009335.01.T01:CDS
TCCTGAAGAATTTGCTGGCT+TGG 0.291582 2:-50507740 MsG0280009335.01.T01:CDS
CGAAGTTCGAGAAGGGAAAA+TGG 0.297664 2:-50507401 MsG0280009335.01.T01:CDS
CCAAACATGAATTTCCTATA+TGG 0.311905 2:+50507081 None:intergenic
TTGTTTATGTGAAAGATATA+AGG 0.312566 2:-50507450 MsG0280009335.01.T01:intron
GTCATTACTTACAACAATTA+GGG 0.315558 2:+50511046 None:intergenic
GGTTGTGTCGTTCTTGAATC+TGG 0.320717 2:-50509300 MsG0280009335.01.T01:CDS
AAAACTAAAGTCCACAATTC+AGG 0.328439 2:+50509393 None:intergenic
GATTGGATAGGAAAGTCATT+TGG 0.331486 2:-50509468 MsG0280009335.01.T01:CDS
GTCTAAAGTATTCAGCAATA+AGG 0.337791 2:-50509445 MsG0280009335.01.T01:CDS
AGGAGAGTGGCCGGCGGCGG+TGG 0.351227 2:+50511146 None:intergenic
GCCAAGCCAGCAAATTCTTC+AGG 0.357310 2:+50507739 None:intergenic
GCCATAACAGAAGAAGAATT+AGG 0.368158 2:+50507286 None:intergenic
GGGTTTCCTGAAGAATTTGC+TGG 0.381718 2:-50507745 MsG0280009335.01.T01:CDS
ATGTATTTGGAGATTGTTCC+TGG 0.385811 2:-50509321 MsG0280009335.01.T01:CDS
AGGGATGACTTTGAGAAGAT+TGG 0.392112 2:-50507814 MsG0280009335.01.T01:CDS
AACGGTGATGACGGCTCTAA+TGG 0.392261 2:-50507364 MsG0280009335.01.T01:CDS
AGATGAAAGAGAAATGAAAC+TGG 0.393772 2:+50511219 None:intergenic
CGTTGTACTTGTTCAATACA+TGG 0.394524 2:+50507622 None:intergenic
CTTGAATCTGGTACTGGAAG+TGG 0.400748 2:-50509288 MsG0280009335.01.T01:CDS
CTTACAACAATTAGGGTTTG+TGG 0.410748 2:+50511053 None:intergenic
AAAGAGAAATGAAACTGGAT+TGG 0.410999 2:+50511224 None:intergenic
GGTAATTGTAATCTCCATAT+AGG 0.412202 2:-50507095 MsG0280009335.01.T01:three_prime_UTR
GATCCCTCAGATACCGTTAC+TGG 0.416695 2:+50509528 None:intergenic
CCATATAGGAAATTCATGTT+TGG 0.417762 2:-50507081 MsG0280009335.01.T01:three_prime_UTR
ATTGGATAGGAAAGTCATTT+GGG 0.422230 2:-50509467 MsG0280009335.01.T01:CDS
TTGCAAGAGGAGGCAGCGTT+CGG 0.438325 2:-50507332 MsG0280009335.01.T01:CDS
TGGAGAAGGAGGAGAGTGGC+CGG 0.445025 2:+50511137 None:intergenic
AGGAGGAGAGTGGCCGGCGG+CGG 0.452679 2:+50511143 None:intergenic
TTTATAATTAAAATATTTGA+GGG 0.453920 2:-50507036 MsG0280009335.01.T01:three_prime_UTR
ATGGAAAGCTTAGAGATTAA+CGG 0.454257 2:-50507382 MsG0280009335.01.T01:CDS
TTAGGGTTTGTGGAGAGAGA+TGG 0.456557 2:+50511063 None:intergenic
TCTAAAGTATTCAGCAATAA+GGG 0.459899 2:-50509444 MsG0280009335.01.T01:CDS
GGCCGGCGGCGGTGGTGCGG+TGG 0.464107 2:+50511154 None:intergenic
CGGTGGTGCGGTGGAGCGAT+TGG 0.466197 2:+50511163 None:intergenic
GTCGTTCTTGAATCTGGTAC+TGG 0.478619 2:-50509294 MsG0280009335.01.T01:CDS
AGTGGCCGGCGGCGGTGGTG+CGG 0.484602 2:+50511151 None:intergenic
CTCCACCGCACCACCGCCGC+CGG 0.494208 2:-50511156 MsG0280009335.01.T01:five_prime_UTR
AAGAGAAATGAAACTGGATT+GGG 0.496295 2:+50511225 None:intergenic
ACGGGAAGTACCGGTGAAGT+TGG 0.505380 2:+50507579 None:intergenic
CTTTAACTACTTCACTTGCA+AGG 0.505822 2:-50509263 MsG0280009335.01.T01:CDS
ATAGCTCTCAAAACTGAAGA+AGG 0.513068 2:+50511088 None:intergenic
GCAAGGGCAGTTGCTCCTAC+AGG 0.518867 2:-50509246 MsG0280009335.01.T01:CDS
TACTTGTTTATTGAAAATGT+TGG 0.523271 2:-50509640 MsG0280009335.01.T01:exon
ATCTTATTTATAATAATGAT+CGG 0.525184 2:-50511379 MsG0280009335.01.T01:five_prime_UTR
GAACGCTGCCTCCTCTTGCA+AGG 0.526937 2:+50507334 None:intergenic
GAGATTAATCCGCCACTGGA+TGG 0.534384 2:+50511113 None:intergenic
TTGAATCTGGTACTGGAAGT+GGG 0.536848 2:-50509287 MsG0280009335.01.T01:CDS
AACGCTGCCTCCTCTTGCAA+GGG 0.540373 2:+50507335 None:intergenic
TTAATCCGCCACTGGATGGA+TGG 0.541557 2:+50511117 None:intergenic
ATTTGGCAATTGTTTATGCA+AGG 0.545176 2:-50509566 MsG0280009335.01.T01:CDS
ATAAGCAGCTTAGTCACTGC+GGG 0.545723 2:-50507790 MsG0280009335.01.T01:CDS
GTTGTACTTGTTCAATACAT+GGG 0.547418 2:+50507623 None:intergenic
ATTCACAACATTCATGTGGA+AGG 0.547599 2:-50507123 MsG0280009335.01.T01:three_prime_UTR
GCGGGAGTGAGGGACATTCA+AGG 0.551907 2:-50507772 MsG0280009335.01.T01:CDS
GCTTAGTCACTGCGGGAGTG+AGG 0.551945 2:-50507783 MsG0280009335.01.T01:CDS
TTCAAACATTCAGATTGGAT+AGG 0.552647 2:-50509480 MsG0280009335.01.T01:CDS
GGAAGCATTAGTATTACTGA+AGG 0.563814 2:+50511246 None:intergenic
CACTGGATGGATGGAGAAGG+AGG 0.564541 2:+50511126 None:intergenic
GAAGCCAGTAACGGTATCTG+AGG 0.567229 2:-50509532 MsG0280009335.01.T01:CDS
AAGAGGAGGCAGCGTTCGGA+TGG 0.567518 2:-50507328 MsG0280009335.01.T01:CDS
CTTAGTCACTGCGGGAGTGA+GGG 0.567587 2:-50507782 MsG0280009335.01.T01:CDS
GGAATAGCTAGCCAAGGTTG+AGG 0.572196 2:+50507694 None:intergenic
TAGCACCTACTCCTGAATTG+TGG 0.573848 2:-50509404 MsG0280009335.01.T01:CDS
TATTTATAATAATGATCGGA+GGG 0.578053 2:-50511375 MsG0280009335.01.T01:five_prime_UTR
TTTAACTACTTCACTTGCAA+GGG 0.578833 2:-50509262 MsG0280009335.01.T01:CDS
GTGAGGGACATTCAAGGTGA+GGG 0.582946 2:-50507766 MsG0280009335.01.T01:CDS
GATTCAAGAACGACACAACC+AGG 0.585429 2:+50509303 None:intergenic
GGAGGAGATTAATCCGCCAC+TGG 0.585612 2:+50511109 None:intergenic
AGTAACGGTATCTGAGGGAT+CGG 0.588437 2:-50509526 MsG0280009335.01.T01:CDS
CTCCTTCTCCATCCATCCAG+TGG 0.588499 2:-50511125 MsG0280009335.01.T01:five_prime_UTR
ACAATGCAATCCAACTTCAC+CGG 0.590929 2:-50507589 MsG0280009335.01.T01:intron
TTAGAGATTAACGGTGATGA+CGG 0.592052 2:-50507373 MsG0280009335.01.T01:CDS
CTTAATTCACAACATTCATG+TGG 0.594752 2:-50507127 MsG0280009335.01.T01:three_prime_UTR
AAAGTCCACAATTCAGGAGT+AGG 0.594923 2:+50509399 None:intergenic
TTTAATAGAACAATTAGTAA+CGG 0.596180 2:-50509591 MsG0280009335.01.T01:CDS
CGCCACTGGATGGATGGAGA+AGG 0.603338 2:+50511123 None:intergenic
CTTCTCCATCCATCCAGTGG+CGG 0.609755 2:-50511122 MsG0280009335.01.T01:five_prime_UTR
AACGTATAAACATGTCCTGT+AGG 0.611682 2:+50509231 None:intergenic
CGGACATACGAAGTTCGAGA+AGG 0.611846 2:-50507409 MsG0280009335.01.T01:CDS
CTCGAACTTCGTATGTCCGT+AGG 0.612530 2:+50507413 None:intergenic
GTTCTCTCCCTTGCAAGAGG+AGG 0.614822 2:-50507342 MsG0280009335.01.T01:CDS
TGACCTCTAGCTTCACCACA+TGG 0.618356 2:+50507259 None:intergenic
GCTCTCAAAACTGAAGAAGG+AGG 0.621438 2:+50511091 None:intergenic
ATGGTTCTCTCCCTTGCAAG+AGG 0.623227 2:-50507345 MsG0280009335.01.T01:CDS
GGACATACGAAGTTCGAGAA+GGG 0.625372 2:-50507408 MsG0280009335.01.T01:CDS
TTATTTATAATAATGATCGG+AGG 0.626648 2:-50511376 MsG0280009335.01.T01:five_prime_UTR
TTGTACTTGTTCAATACATG+GGG 0.627250 2:+50507624 None:intergenic
TGAGGGACATTCAAGGTGAG+GGG 0.627956 2:-50507765 MsG0280009335.01.T01:CDS
GCGTTCGGATGGAGCTAGTG+TGG 0.628213 2:-50507317 MsG0280009335.01.T01:CDS
TCTGTTATGGCTAGACCATG+TGG 0.628693 2:-50507274 MsG0280009335.01.T01:CDS
AACAGAAGAAGAATTAGGAT+AGG 0.630818 2:+50507291 None:intergenic
AACAAAGATCTGGATCAGCT+AGG 0.636973 2:-50509197 MsG0280009335.01.T01:intron
AGACCATGTGGTGAAGCTAG+AGG 0.638065 2:-50507262 MsG0280009335.01.T01:CDS
GAAGCATTAGTATTACTGAA+GGG 0.639238 2:+50511247 None:intergenic
AGTGAGGGACATTCAAGGTG+AGG 0.642071 2:-50507767 MsG0280009335.01.T01:CDS
GCTGAAGGAATAGCTAGCCA+AGG 0.647664 2:+50507688 None:intergenic
CATATAGAATCTGTGTCCTG+TGG 0.649958 2:+50509367 None:intergenic
TGGATGGAGAAGGAGGAGAG+TGG 0.654741 2:+50511133 None:intergenic
AAGCCAGTAACGGTATCTGA+GGG 0.657172 2:-50509531 MsG0280009335.01.T01:CDS
AGAAGGAGGAGAGTGGCCGG+CGG 0.666844 2:+50511140 None:intergenic
TGACAACATGAAGCCAGTAA+CGG 0.669534 2:-50509541 MsG0280009335.01.T01:CDS
GGTGAAGCTAGAGGTCACAC+TGG 0.683965 2:-50507253 MsG0280009335.01.T01:CDS
AAAGTATTCAGCAATAAGGG+CGG 0.684692 2:-50509441 MsG0280009335.01.T01:CDS
CATAAGCAGCTTAGTCACTG+CGG 0.689323 2:-50507791 MsG0280009335.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACAAATTATATAC+CGG - Chr2:50507150-50507169 MsG0280009335.01.T01:three_prime_UTR 10.0%
!! AATCAATTTAATTAAACAAT+AGG - Chr2:50507742-50507761 MsG0280009335.01.T01:CDS 10.0%
!!! ATCTTATTTATAATAATGAT+CGG - Chr2:50507055-50507074 MsG0280009335.01.T01:three_prime_UTR 10.0%
!!! ATTATTTTAGTTTATTTTGA+TGG - Chr2:50507929-50507948 MsG0280009335.01.T01:intron 10.0%
!! ACATATAAAAGAAGAAAAAA+CGG + Chr2:50510877-50510896 None:intergenic 15.0%
!! AGTCAATTATATATAAAACA+AGG + Chr2:50510313-50510332 None:intergenic 15.0%
!! ATAGCTTATATATTGTATTA+CGG + Chr2:50510251-50510270 None:intergenic 15.0%
!! TAATAACTAGAAATTGATTA+TGG + Chr2:50508570-50508589 None:intergenic 15.0%
!! TTTAATAGAACAATTAGTAA+CGG - Chr2:50508843-50508862 MsG0280009335.01.T01:intron 15.0%
!!! ATAAGCTATTTTTATAAAAC+AGG + Chr2:50508494-50508513 None:intergenic 15.0%
!!! ATAATCAATTTCTAGTTATT+AGG - Chr2:50508569-50508588 MsG0280009335.01.T01:intron 15.0%
!!! TAAGCTATTTTTATAAAACA+GGG + Chr2:50508493-50508512 None:intergenic 15.0%
!!! TGGTTTATATTAGAATATTT+TGG - Chr2:50508302-50508321 MsG0280009335.01.T01:intron 15.0%
!!! TTGTTTTTTTTTTTAAGGAT+GGG + Chr2:50507141-50507160 None:intergenic 15.0%
!!! TTTGTTTTTTTTTTTAAGGA+TGG + Chr2:50507142-50507161 None:intergenic 15.0%
!! ACTATTAGGAAAAAAAAAAC+TGG - Chr2:50508197-50508216 MsG0280009335.01.T01:intron 20.0%
!! ATAATATTACTTGCAATTAC+TGG + Chr2:50510463-50510482 None:intergenic 20.0%
!! ATCAAATCACAATCATAAAT+TGG + Chr2:50507438-50507457 None:intergenic 20.0%
!! CATATAAAAGAAGAAAAAAC+GGG + Chr2:50510876-50510895 None:intergenic 20.0%
!! GTAATTGCAAGTAATATTAT+TGG - Chr2:50510463-50510482 MsG0280009335.01.T01:intron 20.0%
!! GTAGTTTAAATTTGAATGAA+CGG - Chr2:50507878-50507897 MsG0280009335.01.T01:intron 20.0%
!! TAAAAATAAACTGTTGTATG+AGG + Chr2:50511286-50511305 None:intergenic 20.0%
!! TACTTGTTTATTGAAAATGT+TGG - Chr2:50508794-50508813 MsG0280009335.01.T01:intron 20.0%
!! TATTTATAATAATGATCGGA+GGG - Chr2:50507059-50507078 MsG0280009335.01.T01:three_prime_UTR 20.0%
!! TTATTTATAATAATGATCGG+AGG - Chr2:50507058-50507077 MsG0280009335.01.T01:three_prime_UTR 20.0%
!! TTGTTTATGTGAAAGATATA+AGG - Chr2:50510984-50511003 MsG0280009335.01.T01:intron 20.0%
!!! AATATTGTTTTTCTTCTTGT+AGG - Chr2:50510600-50510619 MsG0280009335.01.T01:intron 20.0%
!!! ATATTGTTTTTCTTCTTGTA+GGG - Chr2:50510601-50510620 MsG0280009335.01.T01:intron 20.0%
!!! ATTTTAGTTTATTTTGATGG+CGG - Chr2:50507932-50507951 MsG0280009335.01.T01:intron 20.0%
!!! TCATGGTTTTTTCAATTTTT+CGG - Chr2:50508594-50508613 MsG0280009335.01.T01:intron 20.0%
!!! TGTTTTTTTTTTTAAGGATG+GGG + Chr2:50507140-50507159 None:intergenic 20.0%
!!! TTTATTTTCAAAAGAACACA+TGG + Chr2:50507487-50507506 None:intergenic 20.0%
!!! TTTTTACAATGGAAAAACTT+AGG - Chr2:50510198-50510217 MsG0280009335.01.T01:intron 20.0%
! ACATAAACAAACGTATACAA+AGG + Chr2:50510974-50510993 None:intergenic 25.0%
! ACCCTACATACAAATAAAAA+AGG + Chr2:50510289-50510308 None:intergenic 25.0%
! AGTCATTACTTACAACAATT+AGG + Chr2:50507392-50507411 None:intergenic 25.0%
! ATTTACATGTGCTTATCTTT+AGG - Chr2:50509294-50509313 MsG0280009335.01.T01:CDS 25.0%
! CATACAAATAAAAAAGGGAA+TGG + Chr2:50510283-50510302 None:intergenic 25.0%
! CATTTCTTTGCATTATATTG+TGG - Chr2:50510427-50510446 MsG0280009335.01.T01:intron 25.0%
! CCCTACATACAAATAAAAAA+GGG + Chr2:50510288-50510307 None:intergenic 25.0%
! CTACCAAAAAACTAGAATAA+CGG + Chr2:50509423-50509442 None:intergenic 25.0%
! GTCATTACTTACAACAATTA+GGG + Chr2:50507391-50507410 None:intergenic 25.0%
! TAAAGATACACTTTGACATA+CGG + Chr2:50507832-50507851 None:intergenic 25.0%
! TAACAGGTTTAACAACAATT+AGG + Chr2:50507676-50507695 None:intergenic 25.0%
! TTAGGAAAAAAAAAACTGGT+TGG - Chr2:50508201-50508220 MsG0280009335.01.T01:intron 25.0%
! TTAGGAAAACAACTTATGAT+TGG - Chr2:50508282-50508301 MsG0280009335.01.T01:intron 25.0%
! TTATTTAACTGTACTCAATG+CGG - Chr2:50510532-50510551 MsG0280009335.01.T01:intron 25.0%
!! AAATTTGAATGAACGGTTTT+TGG - Chr2:50507885-50507904 MsG0280009335.01.T01:intron 25.0%
!! AAGGGTAATTTTGTAATTTC+CGG + Chr2:50507172-50507191 None:intergenic 25.0%
!! TCTAAAGTATTCAGCAATAA+GGG - Chr2:50508990-50509009 MsG0280009335.01.T01:intron 25.0%
!! TTCATTGTTTTCTCTGTTTT+CGG - Chr2:50508763-50508782 MsG0280009335.01.T01:intron 25.0%
!! TTGTCAAATTGATTCAATAG+CGG - Chr2:50509980-50509999 MsG0280009335.01.T01:intron 25.0%
!! TTTCTAGTGTTGTCAAATAT+TGG - Chr2:50509335-50509354 MsG0280009335.01.T01:CDS 25.0%
!!! CCCTTTTTTATTTGTATGTA+GGG - Chr2:50510285-50510304 MsG0280009335.01.T01:intron 25.0%
!!! TCACCAAAAATACGTTTTTT+AGG + Chr2:50509540-50509559 None:intergenic 25.0%
!!! TCCCTTTTTTATTTGTATGT+AGG - Chr2:50510284-50510303 MsG0280009335.01.T01:intron 25.0%
!!! TTTCTAGTTATTAGGTTTCA+TGG - Chr2:50508577-50508596 MsG0280009335.01.T01:intron 25.0%
!!! TTTTAGTTTATTTTGATGGC+GGG - Chr2:50507933-50507952 MsG0280009335.01.T01:intron 25.0%
AAAACTAAAGTCCACAATTC+AGG + Chr2:50509044-50509063 None:intergenic 30.0%
AAAATCACGATCAAACTCAT+GGG + Chr2:50509736-50509755 None:intergenic 30.0%
AAAGAGAAATGAAACTGGAT+TGG + Chr2:50507213-50507232 None:intergenic 30.0%
AACAATTAGTAACGGTGATT+TGG - Chr2:50508851-50508870 MsG0280009335.01.T01:intron 30.0%
AACAGAAGAAGAATTAGGAT+AGG + Chr2:50511146-50511165 None:intergenic 30.0%
AACATAACAGGTTTCACATT+GGG + Chr2:50507554-50507573 None:intergenic 30.0%
AAGAGAAATGAAACTGGATT+GGG + Chr2:50507212-50507231 None:intergenic 30.0%
AATAAGTTGCTTATCCAATC+AGG - Chr2:50508543-50508562 MsG0280009335.01.T01:intron 30.0%
ACAAATAAAAAAGGGAATGG+AGG + Chr2:50510280-50510299 None:intergenic 30.0%
AGATGAAAGAGAAATGAAAC+TGG + Chr2:50507218-50507237 None:intergenic 30.0%
AGTTTCTCAAACAACATAAC+AGG + Chr2:50507566-50507585 None:intergenic 30.0%
ATAAGTTGCTTATCCAATCA+GGG - Chr2:50508544-50508563 MsG0280009335.01.T01:intron 30.0%
ATGGAAAGCTTAGAGATTAA+CGG - Chr2:50511052-50511071 MsG0280009335.01.T01:intron 30.0%
ATTGGATAGGAAAGTCATTT+GGG - Chr2:50508967-50508986 MsG0280009335.01.T01:intron 30.0%
ATTGTAAAAATAAGCCACGT+TGG + Chr2:50510188-50510207 None:intergenic 30.0%
ATTTGGCAATTGTTTATGCA+AGG - Chr2:50508868-50508887 MsG0280009335.01.T01:intron 30.0%
CCAAACATGAATTTCCTATA+TGG + Chr2:50511356-50511375 None:intergenic 30.0%
CCATATAGGAAATTCATGTT+TGG - Chr2:50511353-50511372 MsG0280009335.01.T01:intron 30.0%
CTTAATTCACAACATTCATG+TGG - Chr2:50511307-50511326 MsG0280009335.01.T01:intron 30.0%
GAAATAGAAGATAGTAACGT+GGG + Chr2:50510368-50510387 None:intergenic 30.0%
GACTTATTTCAACTGTTATG+CGG - Chr2:50510329-50510348 MsG0280009335.01.T01:intron 30.0%
GGTAATTGTAATCTCCATAT+AGG - Chr2:50511339-50511358 MsG0280009335.01.T01:intron 30.0%
GTATGTCAAAGTGTATCTTT+AGG - Chr2:50507831-50507850 MsG0280009335.01.T01:intron 30.0%
GTTGTACTTGTTCAATACAT+GGG + Chr2:50510814-50510833 None:intergenic 30.0%
TATTGTATTACGGTGAATAC+AGG + Chr2:50510241-50510260 None:intergenic 30.0%
TCCTAATTCTTCTTCTGTTA+TGG - Chr2:50511147-50511166 MsG0280009335.01.T01:five_prime_UTR 30.0%
TCTATGCATGTTTGAATTGA+CGG - Chr2:50508136-50508155 MsG0280009335.01.T01:intron 30.0%
TGAAATAGAAGATAGTAACG+TGG + Chr2:50510369-50510388 None:intergenic 30.0%
TTCAAACATTCAGATTGGAT+AGG - Chr2:50508954-50508973 MsG0280009335.01.T01:intron 30.0%
TTGTAAAAATAAGCCACGTT+GGG + Chr2:50510187-50510206 None:intergenic 30.0%
TTGTACTTGTTCAATACATG+GGG + Chr2:50510813-50510832 None:intergenic 30.0%
TTTAACTACTTCACTTGCAA+GGG - Chr2:50509172-50509191 MsG0280009335.01.T01:intron 30.0%
TTTCCGTAATATGCTATTGA+TGG - Chr2:50510398-50510417 MsG0280009335.01.T01:intron 30.0%
! AGCAGAAAAAAGAGACTTTT+AGG - Chr2:50509459-50509478 MsG0280009335.01.T01:CDS 30.0%
! GAAAGATATAAGGACTTTTG+AGG - Chr2:50510994-50511013 MsG0280009335.01.T01:intron 30.0%
! GAAGCATTAGTATTACTGAA+GGG + Chr2:50507190-50507209 None:intergenic 30.0%
! GTCTAAAGTATTCAGCAATA+AGG - Chr2:50508989-50509008 MsG0280009335.01.T01:intron 30.0%
! GTGTTTTCAAACATTCAGAT+TGG - Chr2:50508949-50508968 MsG0280009335.01.T01:intron 30.0%
! TCATTGTTTTCTCTGTTTTC+GGG - Chr2:50508764-50508783 MsG0280009335.01.T01:intron 30.0%
! TGAAAGTATGGATTTCACAT+TGG + Chr2:50507630-50507649 None:intergenic 30.0%
!! ATCTTGCAATTCATTGATTC+AGG + Chr2:50509612-50509631 None:intergenic 30.0%
!! CAGCTTTGTTGTTATGTATT+TGG - Chr2:50509100-50509119 MsG0280009335.01.T01:intron 30.0%
!!! AAACGTATTTTTGGTGAAAC+TGG - Chr2:50509543-50509562 MsG0280009335.01.T01:CDS 30.0%
!!! AACGTATTTTTGGTGAAACT+GGG - Chr2:50509544-50509563 MsG0280009335.01.T01:CDS 30.0%
!!! AACGTGGCTTATTTTTACAA+TGG - Chr2:50510187-50510206 MsG0280009335.01.T01:intron 30.0%
!!! CCAAAAATACGTTTTTTAGG+CGG + Chr2:50509537-50509556 None:intergenic 30.0%
!!! TAGTGTTGCAGTTTTTTTAG+CGG + Chr2:50509389-50509408 None:intergenic 30.0%
!!! TTGCCGTTATTCTAGTTTTT+TGG - Chr2:50509417-50509436 MsG0280009335.01.T01:CDS 30.0%
!!! TTTTTTTTTTAAGGATGGGG+TGG + Chr2:50507137-50507156 None:intergenic 30.0%
AAATTGATTATGGCCCTGAT+TGG + Chr2:50508560-50508579 None:intergenic 35.0%
AACCGTCTTATCTTACAAAG+TGG + Chr2:50508358-50508377 None:intergenic 35.0%
AACGTATAAACATGTCCTGT+AGG + Chr2:50509206-50509225 None:intergenic 35.0%
ACGTGAAGAAACTGAAAGTA+TGG + Chr2:50507642-50507661 None:intergenic 35.0%
ACTGCAGAAAATTGAAGGTA+CGG + Chr2:50509639-50509658 None:intergenic 35.0%
AGCATTAACAGGTTTCACAT+TGG + Chr2:50507526-50507545 None:intergenic 35.0%
ATAAACATGCCCTTCACAAA+TGG + Chr2:50509844-50509863 None:intergenic 35.0%
ATAGCTCTCAAAACTGAAGA+AGG + Chr2:50507349-50507368 None:intergenic 35.0%
ATATCTGTTGCAATCAGTAG+CGG - Chr2:50507083-50507102 MsG0280009335.01.T01:three_prime_UTR 35.0%
ATCCCTTCATAAATTGGCTA+TGG - Chr2:50509778-50509797 MsG0280009335.01.T01:intron 35.0%
ATGTATTTGGAGATTGTTCC+TGG - Chr2:50509113-50509132 MsG0280009335.01.T01:intron 35.0%
ATTCACAACATTCATGTGGA+AGG - Chr2:50511311-50511330 MsG0280009335.01.T01:intron 35.0%
ATTGAACCACAACAAAGCAA+AGG + Chr2:50507715-50507734 None:intergenic 35.0%
ATTGGGTTAACAGCATTAAC+AGG + Chr2:50507537-50507556 None:intergenic 35.0%
CAAAATCACGATCAAACTCA+TGG + Chr2:50509737-50509756 None:intergenic 35.0%
CAACATAACAGGTTTCACAT+TGG + Chr2:50507555-50507574 None:intergenic 35.0%
CAATGGAAAAACTTAGGAGT+CGG - Chr2:50510204-50510223 MsG0280009335.01.T01:intron 35.0%
CGTAGTAGTTATGCAACTAA+TGG - Chr2:50510921-50510940 MsG0280009335.01.T01:intron 35.0%
CGTTGTACTTGTTCAATACA+TGG + Chr2:50510815-50510834 None:intergenic 35.0%
CTATCTTCTATTTCACGTAG+CGG - Chr2:50510374-50510393 MsG0280009335.01.T01:intron 35.0%
CTCCACTTTGTAAGATAAGA+CGG - Chr2:50508353-50508372 MsG0280009335.01.T01:intron 35.0%
CTTACAACAATTAGGGTTTG+TGG + Chr2:50507384-50507403 None:intergenic 35.0%
CTTTAACTACTTCACTTGCA+AGG - Chr2:50509171-50509190 MsG0280009335.01.T01:intron 35.0%
GATTGGATAGGAAAGTCATT+TGG - Chr2:50508966-50508985 MsG0280009335.01.T01:intron 35.0%
GCAAAAATGTTACGACATGA+CGG - Chr2:50510770-50510789 MsG0280009335.01.T01:intron 35.0%
GCCATAACAGAAGAAGAATT+AGG + Chr2:50511151-50511170 None:intergenic 35.0%
GGTTATCTTCCTTGAAATTC+CGG + Chr2:50509591-50509610 None:intergenic 35.0%
GTGCCATCAATAGCATATTA+CGG + Chr2:50510404-50510423 None:intergenic 35.0%
GTTATCTTCCTTGAAATTCC+GGG + Chr2:50509590-50509609 None:intergenic 35.0%
TAAACACTTGTGACACTGAT+TGG - Chr2:50508253-50508272 MsG0280009335.01.T01:intron 35.0%
TTAGAGATTAACGGTGATGA+CGG - Chr2:50511061-50511080 MsG0280009335.01.T01:five_prime_UTR 35.0%
TTGTTTACAATTGCAACCAG+CGG + Chr2:50507994-50508013 None:intergenic 35.0%
! AAACACTTGTGACACTGATT+GGG - Chr2:50508254-50508273 MsG0280009335.01.T01:intron 35.0%
! AAAGTATTCAGCAATAAGGG+CGG - Chr2:50508993-50509012 MsG0280009335.01.T01:intron 35.0%
! ATTTGATTTCCATGAGCACA+GGG - Chr2:50509866-50509885 MsG0280009335.01.T01:intron 35.0%
! CCGCCTAAAAAACGTATTTT+TGG - Chr2:50509534-50509553 MsG0280009335.01.T01:CDS 35.0%
! GATTTTCACGAACAAAGATC+TGG - Chr2:50509227-50509246 MsG0280009335.01.T01:CDS 35.0%
! TCGGTTTTACAGAATCGATT+CGG - Chr2:50508927-50508946 MsG0280009335.01.T01:intron 35.0%
!! CTTTGAGATGTTCAGTGTAA+AGG - Chr2:50510562-50510581 MsG0280009335.01.T01:intron 35.0%
!! GGAAGCATTAGTATTACTGA+AGG + Chr2:50507191-50507210 None:intergenic 35.0%
!! GTCATTTTCATGAGCTATCT+TGG + Chr2:50508436-50508455 None:intergenic 35.0%
!!! ATACGTTTTTTAGGCGGTAA+TGG + Chr2:50509531-50509550 None:intergenic 35.0%
AAAGTCCACAATTCAGGAGT+AGG + Chr2:50509038-50509057 None:intergenic 40.0%
AACAAAGATCTGGATCAGCT+AGG - Chr2:50509237-50509256 MsG0280009335.01.T01:CDS 40.0%
ACAATGCAATCCAACTTCAC+CGG - Chr2:50510845-50510864 MsG0280009335.01.T01:intron 40.0%
ACAGAATCACAGTGCAAGAT+GGG - Chr2:50508167-50508186 MsG0280009335.01.T01:intron 40.0%
ACATGACAGGTTTCTCACAT+TGG + Chr2:50507602-50507621 None:intergenic 40.0%
ACATTCATGTGGAAGGTTTC+TGG - Chr2:50511318-50511337 MsG0280009335.01.T01:intron 40.0%
ACGCATGTATCAAACATCAG+AGG + Chr2:50509921-50509940 None:intergenic 40.0%
ACTATTGTGCTATCACATGG+TGG - Chr2:50510004-50510023 MsG0280009335.01.T01:intron 40.0%
ATATTGGCGCTATAGCATAG+CGG - Chr2:50509351-50509370 MsG0280009335.01.T01:CDS 40.0%
ATCAAACATCAGAGGAAGTC+TGG + Chr2:50509913-50509932 None:intergenic 40.0%
ATCAACAAGCGATATAGGAG+GGG + Chr2:50508111-50508130 None:intergenic 40.0%
ATCGCATCAACAAGCGATAT+AGG + Chr2:50508116-50508135 None:intergenic 40.0%
ATGCATGTTTGAATTGACGG+TGG - Chr2:50508139-50508158 MsG0280009335.01.T01:intron 40.0%
CAAAGACGCATGAACATAAC+AGG + Chr2:50507692-50507711 None:intergenic 40.0%
CATATAGAATCTGTGTCCTG+TGG + Chr2:50509070-50509089 None:intergenic 40.0%
CATCAACAAGCGATATAGGA+GGG + Chr2:50508112-50508131 None:intergenic 40.0%
CCTTCATAAATTGGCTATGG+CGG - Chr2:50509781-50509800 MsG0280009335.01.T01:intron 40.0%
CGCCATAGCCAATTTATGAA+GGG + Chr2:50509783-50509802 None:intergenic 40.0%
CGTTGACATTCTGAACAGTA+GGG + Chr2:50510499-50510518 None:intergenic 40.0%
CTATCCCAGTTTCACTATCA+GGG - Chr2:50510058-50510077 MsG0280009335.01.T01:intron 40.0%
CTTATCTTACAAAGTGGAGC+CGG + Chr2:50508352-50508371 None:intergenic 40.0%
CTTCATAAATTGGCTATGGC+GGG - Chr2:50509782-50509801 MsG0280009335.01.T01:intron 40.0%
GAGCCAGACAAAAAAGTTTG+GGG + Chr2:50507969-50507988 None:intergenic 40.0%
GAGCTATCTTGGAGAGTTTA+TGG + Chr2:50508425-50508444 None:intergenic 40.0%
GGAGCCAGACAAAAAAGTTT+GGG + Chr2:50507970-50507989 None:intergenic 40.0%
GGATCACTGCAGAAAATTGA+AGG + Chr2:50509644-50509663 None:intergenic 40.0%
GTATGGTCGGAATCAGAATT+TGG + Chr2:50509679-50509698 None:intergenic 40.0%
TCTGATCCATGTAGTATAGC+CGG - Chr2:50508330-50508349 MsG0280009335.01.T01:intron 40.0%
TGACAACATGAAGCCAGTAA+CGG - Chr2:50508893-50508912 MsG0280009335.01.T01:intron 40.0%
TGCATGTTTGAATTGACGGT+GGG - Chr2:50508140-50508159 MsG0280009335.01.T01:intron 40.0%
TTAGGCAGTGTTGTCAATTG+TGG - Chr2:50509477-50509496 MsG0280009335.01.T01:CDS 40.0%
TTTCACTATCAGGGCAATAG+CGG - Chr2:50510067-50510086 MsG0280009335.01.T01:intron 40.0%
! AGGGATGACTTTGAGAAGAT+TGG - Chr2:50510620-50510639 MsG0280009335.01.T01:intron 40.0%
! ATTGCCCTGATAGTGAAACT+GGG + Chr2:50510065-50510084 None:intergenic 40.0%
! CATTTGATTTCCATGAGCAC+AGG - Chr2:50509865-50509884 MsG0280009335.01.T01:intron 40.0%
! CGTAACATTTTTGCAGCTGA+AGG + Chr2:50510764-50510783 None:intergenic 40.0%
! GAAGAAAAAACGGGAAGTAC+CGG + Chr2:50510867-50510886 None:intergenic 40.0%
! GACACTGATTGGGAAAACTT+AGG - Chr2:50508264-50508283 MsG0280009335.01.T01:intron 40.0%
! TATTGCCCTGATAGTGAAAC+TGG + Chr2:50510066-50510085 None:intergenic 40.0%
! TCAATTTTCTGCAGTGATCC+TGG - Chr2:50509644-50509663 MsG0280009335.01.T01:exon 40.0%
! TCTTTGCCTTTGCTTTGTTG+TGG - Chr2:50507706-50507725 MsG0280009335.01.T01:CDS 40.0%
! TTGAATCTGGTACTGGAAGT+GGG - Chr2:50509147-50509166 MsG0280009335.01.T01:intron 40.0%
! TTTTGGATCTACCTCAACCT+TGG - Chr2:50510729-50510748 MsG0280009335.01.T01:intron 40.0%
!!! CTTGGCTGATGCAGTTTTTT+TGG - Chr2:50510712-50510731 MsG0280009335.01.T01:intron 40.0%
!!! GATCGTGATTTTGACTTCCT+TGG - Chr2:50509744-50509763 MsG0280009335.01.T01:intron 40.0%
!!! GGACTTTAGTTTTAAGCCAC+AGG - Chr2:50509051-50509070 MsG0280009335.01.T01:intron 40.0%
!!! TTATTTTGATGGCGGGATGA+CGG - Chr2:50507940-50507959 MsG0280009335.01.T01:intron 40.0%
!!! TTTTTTTAAGGATGGGGTGG+CGG + Chr2:50507134-50507153 None:intergenic 40.0%
AACATGCCCTTCACAAATGG+TGG + Chr2:50509841-50509860 None:intergenic 45.0%
AAGCCAGTAACGGTATCTGA+GGG - Chr2:50508903-50508922 MsG0280009335.01.T01:intron 45.0%
AGTAACGGTATCTGAGGGAT+CGG - Chr2:50508908-50508927 MsG0280009335.01.T01:intron 45.0%
ATAAGCAGCTTAGTCACTGC+GGG - Chr2:50510644-50510663 MsG0280009335.01.T01:intron 45.0%
CACATTGGCATGAACATGAC+AGG + Chr2:50507587-50507606 None:intergenic 45.0%
CATAAGCAGCTTAGTCACTG+CGG - Chr2:50510643-50510662 MsG0280009335.01.T01:intron 45.0%
CCAGACAAAAAAGTTTGGGG+TGG + Chr2:50507966-50507985 None:intergenic 45.0%
CCGCCATAGCCAATTTATGA+AGG + Chr2:50509784-50509803 None:intergenic 45.0%
CGGAGCCAGACAAAAAAGTT+TGG + Chr2:50507971-50507990 None:intergenic 45.0%
GACAGAATCACAGTGCAAGA+TGG - Chr2:50508166-50508185 MsG0280009335.01.T01:intron 45.0%
GATTCAAGAACGACACAACC+AGG + Chr2:50509134-50509153 None:intergenic 45.0%
GCAGTGTTGTCAATTGTGGA+AGG - Chr2:50509481-50509500 MsG0280009335.01.T01:CDS 45.0%
GCATCAACAAGCGATATAGG+AGG + Chr2:50508113-50508132 None:intergenic 45.0%
GCTATCCCAGTTTCACTATC+AGG - Chr2:50510057-50510076 MsG0280009335.01.T01:intron 45.0%
GCTCTCAAAACTGAAGAAGG+AGG + Chr2:50507346-50507365 None:intergenic 45.0%
GGCACTATTGTGCTATCACA+TGG - Chr2:50510001-50510020 MsG0280009335.01.T01:intron 45.0%
GGGTTTCCTGAAGAATTTGC+TGG - Chr2:50510689-50510708 MsG0280009335.01.T01:intron 45.0%
GGTCGGAATCAGAATTTGGT+GGG + Chr2:50509675-50509694 None:intergenic 45.0%
GTCGTTCTTGAATCTGGTAC+TGG - Chr2:50509140-50509159 MsG0280009335.01.T01:intron 45.0%
TAGCACCTACTCCTGAATTG+TGG - Chr2:50509030-50509049 MsG0280009335.01.T01:intron 45.0%
TCAACAAGCGATATAGGAGG+GGG + Chr2:50508110-50508129 None:intergenic 45.0%
TCTGTTATGGCTAGACCATG+TGG - Chr2:50511160-50511179 MsG0280009335.01.T01:five_prime_UTR 45.0%
TGGTCGGAATCAGAATTTGG+TGG + Chr2:50509676-50509695 None:intergenic 45.0%
TTAGGGTTTGTGGAGAGAGA+TGG + Chr2:50507374-50507393 None:intergenic 45.0%
TTTACAATTGCAACCAGCGG+CGG + Chr2:50507991-50508010 None:intergenic 45.0%
! ATAGCGCTGCGGTTTTCATA+GGG + Chr2:50510042-50510061 None:intergenic 45.0%
! CGTATGATTTTGCTACCCCT+TGG + Chr2:50509711-50509730 None:intergenic 45.0%
! CTTGAATCTGGTACTGGAAG+TGG - Chr2:50509146-50509165 MsG0280009335.01.T01:intron 45.0%
! GAATCAGAATTTGGTGGGTG+CGG + Chr2:50509670-50509689 None:intergenic 45.0%
! GCAGAAAATTGAAGGTACGG+CGG + Chr2:50509636-50509655 None:intergenic 45.0%
! GCGTTGACATTCTGAACAGT+AGG + Chr2:50510500-50510519 None:intergenic 45.0%
! GGTTGTGTCGTTCTTGAATC+TGG - Chr2:50509134-50509153 MsG0280009335.01.T01:intron 45.0%
! TGTTGCAATCAGTAGCGGAA+CGG - Chr2:50507088-50507107 MsG0280009335.01.T01:three_prime_UTR 45.0%
!! TCCTGAAGAATTTGCTGGCT+TGG - Chr2:50510694-50510713 MsG0280009335.01.T01:intron 45.0%
!! TTTTTGGTGAAACTGGGTCC+TGG - Chr2:50509550-50509569 MsG0280009335.01.T01:CDS 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG - Chr2:50507963-50507982 MsG0280009335.01.T01:intron 45.0%
!!! GATTTTGACTTCCTTGGCCA+TGG - Chr2:50509750-50509769 MsG0280009335.01.T01:intron 45.0%
!!! GGACTTTTGAGGTACTCCTA+CGG - Chr2:50511005-50511024 MsG0280009335.01.T01:intron 45.0%
!!! TTTCTCTGTTTTCGGGTTGC+AGG - Chr2:50508771-50508790 MsG0280009335.01.T01:intron 45.0%
!! TTTATAATTAAAATATTTGA+GGG - Chr2:50511398-50511417 MsG0280009335.01.T01:five_prime_UTR 5.0%
!!! ATAATTTGTTTTTTTTTTTA+AGG + Chr2:50507146-50507165 None:intergenic 5.0%
!!! TTTTATAATTAAAATATTTG+AGG - Chr2:50511397-50511416 MsG0280009335.01.T01:five_prime_UTR 5.0%
AACAAGCGATATAGGAGGGG+GGG + Chr2:50508108-50508127 None:intergenic 50.0%
ACCATACTCCAGCATGCCAA+GGG - Chr2:50509692-50509711 MsG0280009335.01.T01:intron 50.0%
AGACCATGTGGTGAAGCTAG+AGG - Chr2:50511172-50511191 MsG0280009335.01.T01:five_prime_UTR 50.0%
AGTGAGGGACATTCAAGGTG+AGG - Chr2:50510667-50510686 MsG0280009335.01.T01:intron 50.0%
ATGGTTCTCTCCCTTGCAAG+AGG - Chr2:50511089-50511108 MsG0280009335.01.T01:five_prime_UTR 50.0%
CAACAAGCGATATAGGAGGG+GGG + Chr2:50508109-50508128 None:intergenic 50.0%
GAAGCCAGTAACGGTATCTG+AGG - Chr2:50508902-50508921 MsG0280009335.01.T01:intron 50.0%
GAGATTAATCCGCCACTGGA+TGG + Chr2:50507324-50507343 None:intergenic 50.0%
GATCCCTCAGATACCGTTAC+TGG + Chr2:50508909-50508928 None:intergenic 50.0%
GCCAAGCCAGCAAATTCTTC+AGG + Chr2:50510698-50510717 None:intergenic 50.0%
GCGGGCATCCCTTCATAAAT+TGG - Chr2:50509772-50509791 MsG0280009335.01.T01:intron 50.0%
GCTGAAGGAATAGCTAGCCA+AGG + Chr2:50510749-50510768 None:intergenic 50.0%
GGAATAGCTAGCCAAGGTTG+AGG + Chr2:50510743-50510762 None:intergenic 50.0%
GTGAGGGACATTCAAGGTGA+GGG - Chr2:50510668-50510687 MsG0280009335.01.T01:intron 50.0%
TCCTTGAAATTCCGGGTTCG+CGG + Chr2:50509583-50509602 None:intergenic 50.0%
TGAGGGACATTCAAGGTGAG+GGG - Chr2:50510669-50510688 MsG0280009335.01.T01:intron 50.0%
TTAATCCGCCACTGGATGGA+TGG + Chr2:50507320-50507339 None:intergenic 50.0%
TTGGCATGCTGGAGTATGGT+CGG + Chr2:50509692-50509711 None:intergenic 50.0%
! GATAGCGCTGCGGTTTTCAT+AGG + Chr2:50510043-50510062 None:intergenic 50.0%
! GTTGCAATCAGTAGCGGAAC+GGG - Chr2:50507089-50507108 MsG0280009335.01.T01:three_prime_UTR 50.0%
! TAGCGCTGCGGTTTTCATAG+GGG + Chr2:50510041-50510060 None:intergenic 50.0%
! TGACCTCTAGCTTCACCACA+TGG + Chr2:50511178-50511197 None:intergenic 50.0%
! TTGCAATCAGTAGCGGAACG+GGG - Chr2:50507090-50507109 MsG0280009335.01.T01:three_prime_UTR 50.0%
! TTTGACTTCCTTGGCCATGG+CGG - Chr2:50509753-50509772 MsG0280009335.01.T01:intron 50.0%
!! AACGGTGATGACGGCTCTAA+TGG - Chr2:50511070-50511089 MsG0280009335.01.T01:five_prime_UTR 50.0%
AAATTCCGGGTTCGCGGGTT+GGG + Chr2:50509577-50509596 None:intergenic 55.0%
AACGCTGCCTCCTCTTGCAA+GGG + Chr2:50511102-50511121 None:intergenic 55.0%
ACCGTGGCCACCATTTGTGA+AGG - Chr2:50509831-50509850 MsG0280009335.01.T01:intron 55.0%
AGATGGGTCGCGGCACTATT+AGG - Chr2:50508183-50508202 MsG0280009335.01.T01:intron 55.0%
ATCTGCATGTGTGCCCAACG+TGG - Chr2:50510171-50510190 MsG0280009335.01.T01:intron 55.0%
CACTGGATGGATGGAGAAGG+AGG + Chr2:50507311-50507330 None:intergenic 55.0%
CCATACTCCAGCATGCCAAG+GGG - Chr2:50509693-50509712 MsG0280009335.01.T01:intron 55.0%
CCCTTCACAAATGGTGGCCA+CGG + Chr2:50509835-50509854 None:intergenic 55.0%
CCGTGGCCACCATTTGTGAA+GGG - Chr2:50509832-50509851 MsG0280009335.01.T01:intron 55.0%
CCTTGAAATTCCGGGTTCGC+GGG + Chr2:50509582-50509601 None:intergenic 55.0%
CTCCTTCTCCATCCATCCAG+TGG - Chr2:50507309-50507328 MsG0280009335.01.T01:CDS 55.0%
CTTAGTCACTGCGGGAGTGA+GGG - Chr2:50510652-50510671 MsG0280009335.01.T01:intron 55.0%
CTTCTCCATCCATCCAGTGG+CGG - Chr2:50507312-50507331 MsG0280009335.01.T01:CDS 55.0%
GACCATACTCCAGCATGCCA+AGG - Chr2:50509691-50509710 MsG0280009335.01.T01:intron 55.0%
GATTTCCATGAGCACAGGGC+TGG - Chr2:50509870-50509889 MsG0280009335.01.T01:intron 55.0%
GGAGGAGATTAATCCGCCAC+TGG + Chr2:50507328-50507347 None:intergenic 55.0%
GGTGAAGCTAGAGGTCACAC+TGG - Chr2:50511181-50511200 MsG0280009335.01.T01:five_prime_UTR 55.0%
GTGAAACTGGGATAGCGCTG+CGG + Chr2:50510053-50510072 None:intergenic 55.0%
GTGGAGCCGGCTATACTACA+TGG + Chr2:50508339-50508358 None:intergenic 55.0%
GTTCTCTCCCTTGCAAGAGG+AGG - Chr2:50511092-50511111 MsG0280009335.01.T01:five_prime_UTR 55.0%
TCACAGTGCAAGATGGGTCG+CGG - Chr2:50508173-50508192 MsG0280009335.01.T01:intron 55.0%
TCTGCCTCACAATTCCACCG+TGG - Chr2:50509815-50509834 MsG0280009335.01.T01:intron 55.0%
TGGATGGAGAAGGAGGAGAG+TGG + Chr2:50507304-50507323 None:intergenic 55.0%
TTATGAAGGGATGCCCGCCA+TGG + Chr2:50509770-50509789 None:intergenic 55.0%
TTCACAAATGGTGGCCACGG+TGG + Chr2:50509832-50509851 None:intergenic 55.0%
TTGACTTCCTTGGCCATGGC+GGG - Chr2:50509754-50509773 MsG0280009335.01.T01:intron 55.0%
TTGCAAGAGGAGGCAGCGTT+CGG - Chr2:50511102-50511121 MsG0280009335.01.T01:five_prime_UTR 55.0%
TTTGCTACCCCTTGGCATGC+TGG + Chr2:50509703-50509722 None:intergenic 55.0%
! TGCAATCAGTAGCGGAACGG+GGG - Chr2:50507091-50507110 MsG0280009335.01.T01:three_prime_UTR 55.0%
!! ACGGGAAGTACCGGTGAAGT+TGG + Chr2:50510858-50510877 None:intergenic 55.0%
!! TTTTAAGGATGGGGTGGCGG+TGG + Chr2:50507131-50507150 None:intergenic 55.0%
AAGAGGAGGCAGCGTTCGGA+TGG - Chr2:50511106-50511125 MsG0280009335.01.T01:five_prime_UTR 60.0%
AGCGATATAGGAGGGGGGGA+AGG + Chr2:50508104-50508123 None:intergenic 60.0%
CCCCTTGGCATGCTGGAGTA+TGG + Chr2:50509696-50509715 None:intergenic 60.0%
CCCGCGAACCCGGAATTTCA+AGG - Chr2:50509579-50509598 MsG0280009335.01.T01:CDS 60.0%
CGCCACTGGATGGATGGAGA+AGG + Chr2:50507314-50507333 None:intergenic 60.0%
CTCATCCAGCCCTGTGCTCA+TGG + Chr2:50509878-50509897 None:intergenic 60.0%
GAAATTCCGGGTTCGCGGGT+TGG + Chr2:50509578-50509597 None:intergenic 60.0%
GAACGCTGCCTCCTCTTGCA+AGG + Chr2:50511103-50511122 None:intergenic 60.0%
GCAAGGGCAGTTGCTCCTAC+AGG - Chr2:50509188-50509207 MsG0280009335.01.T01:intron 60.0%
GCGATATAGGAGGGGGGGAA+GGG + Chr2:50508103-50508122 None:intergenic 60.0%
GCGGGAGTGAGGGACATTCA+AGG - Chr2:50510662-50510681 MsG0280009335.01.T01:intron 60.0%
GCGTTCGGATGGAGCTAGTG+TGG - Chr2:50511117-50511136 MsG0280009335.01.T01:five_prime_UTR 60.0%
GCTTAGTCACTGCGGGAGTG+AGG - Chr2:50510651-50510670 MsG0280009335.01.T01:intron 60.0%
GTGGCCACGGTGGAATTGTG+AGG + Chr2:50509822-50509841 None:intergenic 60.0%
TGGAGAAGGAGGAGAGTGGC+CGG + Chr2:50507300-50507319 None:intergenic 60.0%
! AGAATTTGGTGGGTGCGGCC+AGG + Chr2:50509665-50509684 None:intergenic 60.0%
! GCAATCAGTAGCGGAACGGG+GGG - Chr2:50507092-50507111 MsG0280009335.01.T01:three_prime_UTR 60.0%
!! TTTTTGTCTGGCTCCGCCGC+TGG - Chr2:50507975-50507994 MsG0280009335.01.T01:intron 60.0%
AGAAGGAGGAGAGTGGCCGG+CGG + Chr2:50507297-50507316 None:intergenic 65.0%
! ATCAGTAGCGGAACGGGGGG+TGG - Chr2:50507095-50507114 MsG0280009335.01.T01:three_prime_UTR 65.0%
AGCGGAACGGGGGGTGGCAA+GGG - Chr2:50507101-50507120 MsG0280009335.01.T01:three_prime_UTR 70.0%
AGGGATGCCCGCCATGGCCA+AGG + Chr2:50509764-50509783 None:intergenic 70.0%
CGGTGGTGCGGTGGAGCGAT+TGG + Chr2:50507274-50507293 None:intergenic 70.0%
CTGGACCCAACCCGCGAACC+CGG - Chr2:50509569-50509588 MsG0280009335.01.T01:CDS 70.0%
TAGCGGAACGGGGGGTGGCA+AGG - Chr2:50507100-50507119 MsG0280009335.01.T01:three_prime_UTR 70.0%
AGGAGGAGAGTGGCCGGCGG+CGG + Chr2:50507294-50507313 None:intergenic 75.0%
CGGAACGGGGGGTGGCAAGG+GGG - Chr2:50507103-50507122 MsG0280009335.01.T01:three_prime_UTR 75.0%
GCGGAACGGGGGGTGGCAAG+GGG - Chr2:50507102-50507121 MsG0280009335.01.T01:three_prime_UTR 75.0%
!! CGGGTTCGCGGGTTGGGTCC+AGG + Chr2:50509571-50509590 None:intergenic 75.0%
! AGGAGAGTGGCCGGCGGCGG+TGG + Chr2:50507291-50507310 None:intergenic 80.0%
! AGTGGCCGGCGGCGGTGGTG+CGG + Chr2:50507286-50507305 None:intergenic 80.0%
! CTCCACCGCACCACCGCCGC+CGG - Chr2:50507278-50507297 MsG0280009335.01.T01:CDS 80.0%
! GGCCGGCGGCGGTGGTGCGG+TGG + Chr2:50507283-50507302 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr2 gene 50507036 50511420 50507036 ID=MsG0280009335.01;Name=MsG0280009335.01
Chr2 mRNA 50507036 50511420 50507036 ID=MsG0280009335.01.T01;Parent=MsG0280009335.01;Name=MsG0280009335.01.T01;_AED=0.42;_eAED=0.42;_QI=303|1|1|1|0.5|0.4|5|189|308
Chr2 exon 50507036 50507457 50507036 ID=MsG0280009335.01.T01:exon:8229;Parent=MsG0280009335.01.T01
Chr2 exon 50507590 50507834 50507590 ID=MsG0280009335.01.T01:exon:8228;Parent=MsG0280009335.01.T01
Chr2 exon 50509198 50509663 50509198 ID=MsG0280009335.01.T01:exon:8227;Parent=MsG0280009335.01.T01
Chr2 exon 50511058 50511284 50511058 ID=MsG0280009335.01.T01:exon:8226;Parent=MsG0280009335.01.T01
Chr2 exon 50511362 50511420 50511362 ID=MsG0280009335.01.T01:exon:8225;Parent=MsG0280009335.01.T01
Chr2 five_prime_UTR 50511362 50511420 50511362 ID=MsG0280009335.01.T01:five_prime_utr;Parent=MsG0280009335.01.T01
Chr2 five_prime_UTR 50511058 50511284 50511058 ID=MsG0280009335.01.T01:five_prime_utr;Parent=MsG0280009335.01.T01
Chr2 five_prime_UTR 50509647 50509663 50509647 ID=MsG0280009335.01.T01:five_prime_utr;Parent=MsG0280009335.01.T01
Chr2 CDS 50509198 50509646 50509198 ID=MsG0280009335.01.T01:cds;Parent=MsG0280009335.01.T01
Chr2 CDS 50507590 50507834 50507590 ID=MsG0280009335.01.T01:cds;Parent=MsG0280009335.01.T01
Chr2 CDS 50507225 50507457 50507225 ID=MsG0280009335.01.T01:cds;Parent=MsG0280009335.01.T01
Chr2 three_prime_UTR 50507036 50507224 50507036 ID=MsG0280009335.01.T01:three_prime_utr;Parent=MsG0280009335.01.T01
Gene Sequence

>MsG0280009335.01.T01

ATGTTGGCTATCGATTCTACAAGAAAGATGTCATTTAATAGAACAATTAGTAACGGTGATTTGGCAATTGTTTATGCAAGGCATGACAACATGAAGCCAGTAACGGTATCTGAGGGATCGGTTTTACAGAATCGATTCGGTGTTTTCAAACATTCAGATTGGATAGGAAAGTCATTTGGGTCTAAAGTATTCAGCAATAAGGGCGGTTTTGTTTACTTATTAGCACCTACTCCTGAATTGTGGACTTTAGTTTTAAGCCACAGGACACAGATTCTATATGTTGCAGATATCAGCTTTGTTGTTATGTATTTGGAGATTGTTCCTGGTTGTGTCGTTCTTGAATCTGGTACTGGAAGTGGGTCTTTAACTACTTCACTTGCAAGGGCAGTTGCTCCTACAGGACATGTTTATACGTTTGATTTTCACGAACAAAGATCTGGATCAGCTAGGGATGACTTTGAGAAGATTGGCATAAGCAGCTTAGTCACTGCGGGAGTGAGGGACATTCAAGGTGAGGGGTTTCCTGAAGAATTTGCTGGCTTGGCTGATGCAGTTTTTTTGGATCTACCTCAACCTTGGCTAGCTATTCCTTCAGCTGCAAAAATGTTACGACATGACGGCACTTTATGTTCTTTCTCCCCATGTATTGAACAAGTACAACGATCATGTGACACAATGCAATCCAACTTCACCGATATAAGGACTTTTGAGGTACTCCTACGGACATACGAAGTTCGAGAAGGGAAAATGGAAAGCTTAGAGATTAACGGTGATGACGGCTCTAATGGTTCTCTCCCTTGCAAGAGGAGGCAGCGTTCGGATGGAGCTAGTGTGGTTACCTATCCTAATTCTTCTTCTGTTATGGCTAGACCATGTGGTGAAGCTAGAGGTCACACTGGTTATTTGACATTTGCAAGACTTAATTAA
Protein sequence

>MsG0280009335.01.T01

MLAIDSTRKMSFNRTISNGDLAIVYARHDNMKPVTVSEGSVLQNRFGVFKHSDWIGKSFGSKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYVADISFVVMYLEIVPGCVVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRSGSARDDFEKIGISSLVTAGVRDIQGEGFPEEFAGLADAVFLDLPQPWLAIPSAAKMLRHDGTLCSFSPCIEQVQRSCDTMQSNFTDIRTFEVLLRTYEVREGKMESLEINGDDGSNGSLPCKRRQRSDGASVVTYPNSSSVMARPCGEARGHTGYLTFARLN*