AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013860.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013860.01.T01 MTR_1g024920 81.170 393 18 3 1 380 51 400 0.0 626
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013860.01.T01 AT2G45730 50.000 396 113 6 1 380 63 389 1.89e-105 320

Find 121 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGTATCCATTGAAAAT+TGG 0.166239 3:+46778412 MsG0380013860.01.T01:CDS
ATGGTTGGTGGCCTTCTTAC+TGG 0.198600 3:+46779009 MsG0380013860.01.T01:CDS
CAATGGATACTTCTTGAAAT+AGG 0.217844 3:-46778404 None:intergenic
TCCAGCCTTTATAGCTTTGC+AGG 0.222527 3:-46780271 None:intergenic
ATTGACTCGTGGAAGGAAAA+TGG 0.227278 3:+46780315 MsG0380013860.01.T01:CDS
CGTATCAAATGTTGCGCTAT+TGG 0.240963 3:-46777404 None:intergenic
ACCAGTGAGTTGACCGTCTT+TGG 0.244796 3:-46776985 None:intergenic
ATCTCTCATTCGTCAGAAAA+TGG 0.252753 3:+46780183 MsG0380013860.01.T01:CDS
TTTGTATGCAATTCATATCT+TGG 0.278999 3:+46779307 MsG0380013860.01.T01:CDS
ACACCGCCGTCATCATGTTT+TGG 0.300209 3:-46780027 None:intergenic
GAAAATGGAATTTCTGATCT+TGG 0.300851 3:+46780198 MsG0380013860.01.T01:CDS
TATCTTCACCAGTGAGGCTT+TGG 0.305154 3:-46777049 None:intergenic
CGTTAGCCATTGAAAGTAGA+AGG 0.321154 3:-46778954 None:intergenic
TGACATTCTCGTTGTTGATA+TGG 0.336210 3:+46778990 MsG0380013860.01.T01:CDS
CTAACTCAACCTTACAAAAC+TGG 0.337683 3:-46776491 None:intergenic
AAGAGCCTGCAAAGCTATAA+AGG 0.342065 3:+46780266 MsG0380013860.01.T01:CDS
CTAATACCTTTGGGTTGAAA+TGG 0.345383 3:-46775966 None:intergenic
ACAAACAAGAGGTAGTTAAA+AGG 0.346132 3:-46781513 None:intergenic
GCATGCAAATGAGTGCATTT+GGG 0.359567 3:+46781279 MsG0380013860.01.T01:CDS
AGAAGTATCCATTGAAAATT+GGG 0.361508 3:+46778413 MsG0380013860.01.T01:CDS
TGCATGCAAATGAGTGCATT+TGG 0.363049 3:+46781278 MsG0380013860.01.T01:CDS
AGTCTGGTGCAGCAATAATT+AGG 0.382222 3:-46780431 None:intergenic
CTGCACCAGACTTGGATACT+TGG 0.382708 3:+46780442 MsG0380013860.01.T01:CDS
GGACGTCTCATAAGTACTTT+TGG 0.387747 3:-46777871 None:intergenic
ATCTTCACCAGTGAGGCTTT+GGG 0.389493 3:-46777048 None:intergenic
ATTGGTGATAAATAGCAAAT+GGG 0.397185 3:-46780506 None:intergenic
GGTGCTGTGGCAGAGCGTTT+AGG 0.400582 3:+46779030 MsG0380013860.01.T01:CDS
TATTTATCACCAATATCTTC+AGG 0.407320 3:+46780515 MsG0380013860.01.T01:CDS
AATTGCAGAAAATTGAAGAT+TGG 0.413722 3:+46775850 MsG0380013860.01.T01:intron
TATTGGTGATAAATAGCAAA+TGG 0.415287 3:-46780507 None:intergenic
CCGGTTTCGATCCTTGTATC+AGG 0.416979 3:-46781478 None:intergenic
ATTGTCCCTTCTACTTTCAA+TGG 0.417484 3:+46778948 MsG0380013860.01.T01:CDS
CAGCCAAATGGCTAAAAGTA+TGG 0.419192 3:+46781381 MsG0380013860.01.T01:CDS
ATATTTCTCCTGCACAGATA+TGG 0.421785 3:-46777821 None:intergenic
AAAGGTCACCTTCGAGCAAC+AGG 0.421884 3:-46777892 None:intergenic
GCCATGATTGGTTGTCCATT+CGG 0.422303 3:+46775894 MsG0380013860.01.T01:exon
TTGCTCACTACAGCCATGAT+TGG 0.432032 3:+46775882 MsG0380013860.01.T01:exon
GACCGTCTTTGGACTCGGCT+TGG 0.436624 3:-46776974 None:intergenic
TTGTATCAGGAGGTTGAAAC+AGG 0.437225 3:-46781465 None:intergenic
TTATTTATTGCAGAATTGTA+AGG 0.438615 3:+46779956 MsG0380013860.01.T01:intron
AGACTTGGATACTTGGACAT+TGG 0.439819 3:+46780449 MsG0380013860.01.T01:CDS
AGCTATAAAGGCTGGAGAAA+AGG 0.443779 3:+46780278 MsG0380013860.01.T01:CDS
GAGTTGACCGTCTTTGGACT+CGG 0.444453 3:-46776979 None:intergenic
TTGACTCGTGGAAGGAAAAT+GGG 0.449843 3:+46780316 MsG0380013860.01.T01:CDS
GCCTGCAAAGCTATAAAGGC+TGG 0.451952 3:+46780270 MsG0380013860.01.T01:CDS
TTGTGACAACAATTCAGAAA+TGG 0.460444 3:-46779983 None:intergenic
AAGGATCGAAACCGGCTTTG+AGG 0.460540 3:+46781486 MsG0380013860.01.T01:three_prime_UTR
ATCCAATGTAAGGCTCTTAA+CGG 0.463859 3:-46776415 None:intergenic
AATTATTGCTGCACCAGACT+TGG 0.465888 3:+46780434 MsG0380013860.01.T01:CDS
GCCTTATCTCATCCAATGTA+AGG 0.473749 3:-46776425 None:intergenic
AAATGTGTAATCAAGGTAGA+TGG 0.474761 3:-46781352 None:intergenic
TATATGCAGGCAGGGTGCTA+AGG 0.479379 3:+46777354 MsG0380013860.01.T01:intron
GGGGAAGAGTTTGCTAAAAG+TGG 0.485901 3:-46780486 None:intergenic
CTGGTGAGTTGAGGGACAAC+CGG 0.488388 3:+46777003 MsG0380013860.01.T01:CDS
GACCACAAAATGTGTAATCA+AGG 0.489635 3:-46781359 None:intergenic
CTCGTTGTTGATATGGTTGG+TGG 0.492274 3:+46778997 MsG0380013860.01.T01:CDS
TAAAAGGCTTTCCTCAAAGC+CGG 0.494874 3:-46781497 None:intergenic
ACAATAAGAAACGAGTTACA+TGG 0.495662 3:+46775682 MsG0380013860.01.T01:five_prime_UTR
CCTGATACAAGGATCGAAAC+CGG 0.496909 3:+46781478 MsG0380013860.01.T01:three_prime_UTR
GATAGAAAAGGAGCGCCATC+GGG 0.504380 3:-46775942 None:intergenic
CAAAACTGGTTTGTAAGTTG+AGG 0.505425 3:-46776477 None:intergenic
CAACTCGACACTTCTCCCGA+TGG 0.506727 3:+46775927 MsG0380013860.01.T01:CDS
AATACTGCCCAAAGCCTCAC+TGG 0.508455 3:+46777041 MsG0380013860.01.T01:CDS
CTGCCACAGCACCAGTAAGA+AGG 0.510669 3:-46779020 None:intergenic
ATCAAGGTAGATGGTAGAGT+TGG 0.511965 3:-46781343 None:intergenic
AATGTCCAAGTATCCAAGTC+TGG 0.512151 3:-46780447 None:intergenic
TACCGTTAAGAGCCTTACAT+TGG 0.514722 3:+46776413 MsG0380013860.01.T01:CDS
GGTTGAAATGGAGATAGAAA+AGG 0.517330 3:-46775954 None:intergenic
ACCGAATGGACAACCAATCA+TGG 0.519728 3:-46775895 None:intergenic
TCAACTCACTGGTGAGTTGA+GGG 0.521142 3:+46776995 MsG0380013860.01.T01:CDS
CTGAACAAAAGTTTATAAGC+GGG 0.525590 3:+46776448 MsG0380013860.01.T01:CDS
CTATCTCCATTTCAACCCAA+AGG 0.529076 3:+46775960 MsG0380013860.01.T01:CDS
TCTTGGACAGGCACCATCCA+TGG 0.531216 3:+46779324 MsG0380013860.01.T01:CDS
ATGCAATTCATATCTTGGAC+AGG 0.532059 3:+46779312 MsG0380013860.01.T01:CDS
TGTTTCAACCTCCTGATACA+AGG 0.533102 3:+46781467 MsG0380013860.01.T01:three_prime_UTR
AATGCACTCATTTGCATGCA+CGG 0.534233 3:-46781275 None:intergenic
ATTCTCGTTGTTGATATGGT+TGG 0.536995 3:+46778994 MsG0380013860.01.T01:CDS
GAAGCTCACCATATCTGTGC+AGG 0.538596 3:+46777813 MsG0380013860.01.T01:CDS
AACACTGAAGAAATAAAAGA+TGG 0.541792 3:+46776945 MsG0380013860.01.T01:CDS
ATATGCAGGCAGGGTGCTAA+GGG 0.541866 3:+46777355 MsG0380013860.01.T01:intron
GCTTTGCAGGCTCTTAGAGC+AGG 0.543207 3:-46780258 None:intergenic
GCCTTACATTGGATGAGATA+AGG 0.544590 3:+46776424 MsG0380013860.01.T01:CDS
AGATAGAAAAGGAGCGCCAT+CGG 0.545055 3:-46775943 None:intergenic
GTCAACTCACTGGTGAGTTG+AGG 0.545293 3:+46776994 MsG0380013860.01.T01:CDS
TAAGCGACGAAATCTGCAAA+AGG 0.546332 3:+46779368 MsG0380013860.01.T01:CDS
AAATATCCTCACAATATCCA+TGG 0.553785 3:-46779341 None:intergenic
ATGCACGGGTGAGTTCTTGA+AGG 0.554827 3:-46781260 None:intergenic
TCCAAAGACGGTCAACTCAC+TGG 0.557860 3:+46776984 MsG0380013860.01.T01:CDS
ATGCACTCATTTGCATGCAC+GGG 0.558786 3:-46781274 None:intergenic
AAGGTAGTTAAATAGCTAGT+GGG 0.573522 3:-46781441 None:intergenic
CTCAAGAAATCATTGACTCG+TGG 0.573979 3:+46780304 MsG0380013860.01.T01:CDS
GGCTCTTAGAGCAGGAAATG+TGG 0.580777 3:-46780250 None:intergenic
AAGAAACGAGTTACATGGGA+AGG 0.585329 3:+46775687 MsG0380013860.01.T01:five_prime_UTR
AGAAATCATTGACTCGTGGA+AGG 0.586169 3:+46780308 MsG0380013860.01.T01:CDS
TGGCCTTCTTACTGGTGCTG+TGG 0.592640 3:+46779017 MsG0380013860.01.T01:CDS
CAAGGTAGTTAAATAGCTAG+TGG 0.594272 3:-46781442 None:intergenic
CATGCAAATGAGTGCATTTG+GGG 0.597684 3:+46781280 MsG0380013860.01.T01:CDS
GTTTCGATCCTTGTATCAGG+AGG 0.597808 3:-46781475 None:intergenic
TATTATTGTCGATCAACGAC+CGG 0.599829 3:-46777022 None:intergenic
AGTTTGCTAAAAGTGGTAAG+AGG 0.599948 3:-46780479 None:intergenic
TTGGTGATAAATAGCAAATG+GGG 0.602700 3:-46780505 None:intergenic
ATCCTCACAATATCCATGGA+TGG 0.603371 3:-46779337 None:intergenic
AAACTGACGCTGCAGGAGAG+AGG 0.608079 3:-46775761 None:intergenic
CTAATTCAGATTCTTGCGTG+TGG 0.610376 3:+46778921 MsG0380013860.01.T01:intron
TTCCAAGCCGAGTCCAAAGA+CGG 0.617977 3:+46776972 MsG0380013860.01.T01:CDS
CAAAATCCAAAACATGATGA+CGG 0.620534 3:+46780021 MsG0380013860.01.T01:CDS
AATATGTGCATCAGTCAGCA+TGG 0.624090 3:+46780155 MsG0380013860.01.T01:intron
CAATAAGAAACGAGTTACAT+GGG 0.624626 3:+46775683 MsG0380013860.01.T01:five_prime_UTR
CACCATCCATGGATATTGTG+AGG 0.625248 3:+46779335 MsG0380013860.01.T01:CDS
CCTGAACAAAAGTTTATAAG+CGG 0.631648 3:+46776447 MsG0380013860.01.T01:CDS
AAGATATAGAAGACATGCGA+AGG 0.637003 3:+46777066 MsG0380013860.01.T01:CDS
GTTAGCCATTGAAAGTAGAA+GGG 0.644218 3:-46778953 None:intergenic
TGAGACGTCCTGTTGCTCGA+AGG 0.645575 3:+46777884 MsG0380013860.01.T01:CDS
TCAGGAGGTTGAAACAGGCA+AGG 0.653247 3:-46781460 None:intergenic
CTTCTATATCTTCACCAGTG+AGG 0.664706 3:-46777055 None:intergenic
TGAACAAAAGTTTATAAGCG+GGG 0.669900 3:+46776449 MsG0380013860.01.T01:CDS
GTCTTGCTTGATATCAACGA+TGG 0.678428 3:+46775717 MsG0380013860.01.T01:five_prime_UTR
GCTGTGGCAGAGCGTTTAGG+AGG 0.683534 3:+46779033 MsG0380013860.01.T01:CDS
AATCCAAAACATGATGACGG+CGG 0.730375 3:+46780024 MsG0380013860.01.T01:CDS
ATGTGCATCAGTCAGCATGG+AGG 0.746880 3:+46780158 MsG0380013860.01.T01:intron
ATGCAAATGAGTGCATTTGG+GGG 0.754346 3:+46781281 MsG0380013860.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATATTTTATATGTCTT+TGG + Chr3:46778059-46778078 MsG0380013860.01.T01:intron 10.0%
!!! TTATAATTTCTTTCTATTTT+GGG + Chr3:46777302-46777321 MsG0380013860.01.T01:intron 10.0%
!! AAGTACAATTTACATTTAAT+TGG - Chr3:46780059-46780078 None:intergenic 15.0%
!! AATCAAAAAGAAATGTTTAT+AGG + Chr3:46779668-46779687 MsG0380013860.01.T01:intron 15.0%
!! AGAAATATGGTATATTATAA+AGG + Chr3:46776301-46776320 MsG0380013860.01.T01:intron 15.0%
!! CAATAATAACAGAAAAATAA+AGG - Chr3:46777913-46777932 None:intergenic 15.0%
!! GAAATATGGTATATTATAAA+GGG + Chr3:46776302-46776321 MsG0380013860.01.T01:intron 15.0%
!! GATATAAATTTAAACTTAGT+TGG + Chr3:46779059-46779078 MsG0380013860.01.T01:intron 15.0%
!! TAAAGATGTATTTATTTATC+TGG - Chr3:46777218-46777237 None:intergenic 15.0%
!! TAATCATATATTTCTTATTC+AGG + Chr3:46781232-46781251 MsG0380013860.01.T01:intron 15.0%
!! TGAATAGTGATTTATTATAA+AGG + Chr3:46780566-46780585 MsG0380013860.01.T01:intron 15.0%
!! TGTTATTATAATTACCTAAA+TGG - Chr3:46776929-46776948 None:intergenic 15.0%
!! TTAAAAGTTAGATAGAAATA+TGG + Chr3:46776288-46776307 MsG0380013860.01.T01:intron 15.0%
!!! AAAATTATTGATTACATCAT+AGG - Chr3:46779819-46779838 None:intergenic 15.0%
!!! AAATTGTTTTCATAAATTCT+TGG - Chr3:46776176-46776195 None:intergenic 15.0%
!!! AGTTTACCATTTATTTTTTT+GGG + Chr3:46779412-46779431 MsG0380013860.01.T01:intron 15.0%
!!! ATTCTTGATTTTTGTTTTTT+GGG + Chr3:46778698-46778717 MsG0380013860.01.T01:intron 15.0%
!!! ATTTTGCTACTTTTTTAATA+TGG + Chr3:46779090-46779109 MsG0380013860.01.T01:intron 15.0%
!!! GAAAAATAAAAGCTTTAAAA+AGG - Chr3:46779517-46779536 None:intergenic 15.0%
!!! GTTATAATTTCTTTCTATTT+TGG + Chr3:46777301-46777320 MsG0380013860.01.T01:intron 15.0%
!!! TATTCTTGATTTTTGTTTTT+TGG + Chr3:46778697-46778716 MsG0380013860.01.T01:intron 15.0%
!!! TATTTACAAAAGTACATAAA+GGG + Chr3:46781121-46781140 MsG0380013860.01.T01:intron 15.0%
!!! TGAGTTTTTCTTTTATAATT+TGG + Chr3:46780404-46780423 MsG0380013860.01.T01:intron 15.0%
!!! TTATGTACTTTTGTAAATAA+AGG - Chr3:46781120-46781139 None:intergenic 15.0%
!!! TTATTTACAAAAGTACATAA+AGG + Chr3:46781120-46781139 MsG0380013860.01.T01:intron 15.0%
!!! TTTTAACCCAAAAAAATAAA+TGG - Chr3:46779421-46779440 None:intergenic 15.0%
!! AAATGTTTATAGGTTTCTTA+TGG + Chr3:46779678-46779697 MsG0380013860.01.T01:intron 20.0%
!! AATCAAATATGTACATGATA+TGG + Chr3:46778025-46778044 MsG0380013860.01.T01:intron 20.0%
!! AATGTTTATAGGTTTCTTAT+GGG + Chr3:46779679-46779698 MsG0380013860.01.T01:intron 20.0%
!! ATAAAGAAAGAAGAAAATTG+AGG - Chr3:46775796-46775815 None:intergenic 20.0%
!! ATGTTGTTAAAAACTAACAA+TGG - Chr3:46776663-46776682 None:intergenic 20.0%
!! ATTGAAAATATTATCATGCA+CGG - Chr3:46780595-46780614 None:intergenic 20.0%
!! CAAAATTCTTATACATTTCA+AGG - Chr3:46778598-46778617 None:intergenic 20.0%
!! GAAAAAAAATTCAAACCAAA+AGG - Chr3:46778225-46778244 None:intergenic 20.0%
!! TAAGCACTTATCATTATATT+GGG + Chr3:46776541-46776560 MsG0380013860.01.T01:intron 20.0%
!! TAGATATATCTTAGAACTTT+GGG - Chr3:46776523-46776542 None:intergenic 20.0%
!! TATTATAATTACCTAAATGG+TGG - Chr3:46776926-46776945 None:intergenic 20.0%
!! TCTATAACTTTGATATAGAT+GGG + Chr3:46777192-46777211 MsG0380013860.01.T01:intron 20.0%
!! TGGCTATTATATTATTGAAT+TGG + Chr3:46778845-46778864 MsG0380013860.01.T01:intron 20.0%
!! TTAGATATATCTTAGAACTT+TGG - Chr3:46776524-46776543 None:intergenic 20.0%
!! TTATTTATTGCAGAATTGTA+AGG + Chr3:46779956-46779975 MsG0380013860.01.T01:intron 20.0%
!! TTCTATAACTTTGATATAGA+TGG + Chr3:46777191-46777210 MsG0380013860.01.T01:intron 20.0%
!! TTGTTTGTTTGCTTTATAAA+CGG + Chr3:46780955-46780974 MsG0380013860.01.T01:intron 20.0%
!!! AGTTTTTAACAACATTTTTG+TGG + Chr3:46776668-46776687 MsG0380013860.01.T01:intron 20.0%
!!! ATGTACATATTTGATTTTCA+AGG - Chr3:46778021-46778040 None:intergenic 20.0%
!!! CAGTTTACCATTTATTTTTT+TGG + Chr3:46779411-46779430 MsG0380013860.01.T01:intron 20.0%
!!! GTTTTCTTTTGTTTCTTTTA+AGG + Chr3:46780621-46780640 MsG0380013860.01.T01:intron 20.0%
!!! TCAACTTTTTTTTTTGAAGA+TGG - Chr3:46779791-46779810 None:intergenic 20.0%
!!! TTAGTTTTACAATCTAAAGT+TGG + Chr3:46779266-46779285 MsG0380013860.01.T01:intron 20.0%
!!! TTATATTTGAGCTATTCTTT+TGG + Chr3:46778467-46778486 MsG0380013860.01.T01:intron 20.0%
!!! TTCTTGATTTTTGTTTTTTG+GGG + Chr3:46778699-46778718 MsG0380013860.01.T01:intron 20.0%
!!! TTTTATAATATACATAGCTC+AGG + Chr3:46779645-46779664 MsG0380013860.01.T01:intron 20.0%
! AAATAAACAATCCAAACAGA+CGG - Chr3:46776116-46776135 None:intergenic 25.0%
! AACACTGAAGAAATAAAAGA+TGG + Chr3:46776945-46776964 MsG0380013860.01.T01:CDS 25.0%
! AATAAAAATCTAGTGTACAC+TGG - Chr3:46781407-46781426 None:intergenic 25.0%
! AATTGCAGAAAATTGAAGAT+TGG + Chr3:46775850-46775869 MsG0380013860.01.T01:intron 25.0%
! ACAATCTCTAAACAAATTTG+AGG + Chr3:46778198-46778217 MsG0380013860.01.T01:intron 25.0%
! AGATATTGTAACACAAAAAG+AGG - Chr3:46778295-46778314 None:intergenic 25.0%
! ATAACAGAAGTAAATGCATA+TGG - Chr3:46778451-46778470 None:intergenic 25.0%
! ATACCTACTAATTCAACATA+TGG - Chr3:46779709-46779728 None:intergenic 25.0%
! ATGTTGAATTAGTAGGTATT+AGG + Chr3:46779710-46779729 MsG0380013860.01.T01:intron 25.0%
! CAAAAATTACCTGAAGATAT+TGG - Chr3:46780527-46780546 None:intergenic 25.0%
! CAATCTCTAAACAAATTTGA+GGG + Chr3:46778199-46778218 MsG0380013860.01.T01:intron 25.0%
! CTAAGCACTTATCATTATAT+TGG + Chr3:46776540-46776559 MsG0380013860.01.T01:intron 25.0%
! CTGAATTCGTTATTAATATC+TGG + Chr3:46778726-46778745 MsG0380013860.01.T01:intron 25.0%
! GATAAACAGAGTAAACAATT+TGG - Chr3:46777780-46777799 None:intergenic 25.0%
! GCTGATCATATTATCAATTT+GGG + Chr3:46780845-46780864 MsG0380013860.01.T01:intron 25.0%
! TAAAAACTAACAATGGCAAA+TGG - Chr3:46776656-46776675 None:intergenic 25.0%
! TATATTGAACTAGTTGCTAA+GGG - Chr3:46776739-46776758 None:intergenic 25.0%
! TATTTATCACCAATATCTTC+AGG + Chr3:46780515-46780534 MsG0380013860.01.T01:CDS 25.0%
! TGCTGATCATATTATCAATT+TGG + Chr3:46780844-46780863 MsG0380013860.01.T01:intron 25.0%
! TGTTTGATCCCTTAAAAATT+TGG - Chr3:46780719-46780738 None:intergenic 25.0%
! TTACTTCAACTTCTTTACAA+GGG + Chr3:46777673-46777692 MsG0380013860.01.T01:intron 25.0%
! TTATATTGAACTAGTTGCTA+AGG - Chr3:46776740-46776759 None:intergenic 25.0%
! TTTACTTCAACTTCTTTACA+AGG + Chr3:46777672-46777691 MsG0380013860.01.T01:intron 25.0%
! TTTGTATGCAATTCATATCT+TGG + Chr3:46779307-46779326 MsG0380013860.01.T01:CDS 25.0%
!! AAAATTTTCAAAGCTTCCTT+TGG + Chr3:46780876-46780895 MsG0380013860.01.T01:intron 25.0%
!! ATTGGTGATAAATAGCAAAT+GGG - Chr3:46780509-46780528 None:intergenic 25.0%
!! CAATATCTTCAGGTAATTTT+TGG + Chr3:46780525-46780544 MsG0380013860.01.T01:intron 25.0%
!! GAATAGTGCCAAATTTTTAA+GGG + Chr3:46780708-46780727 MsG0380013860.01.T01:intron 25.0%
!! GCTAATATACAACTATTTTG+CGG + Chr3:46776617-46776636 MsG0380013860.01.T01:intron 25.0%
!! TATTGGTGATAAATAGCAAA+TGG - Chr3:46780510-46780529 None:intergenic 25.0%
!! TGAATAGTGCCAAATTTTTA+AGG + Chr3:46780707-46780726 MsG0380013860.01.T01:intron 25.0%
!! TTTAGAGTGAAGATGTAATT+TGG + Chr3:46777496-46777515 MsG0380013860.01.T01:intron 25.0%
!!! AAGAAGTATCCATTGAAAAT+TGG + Chr3:46778412-46778431 MsG0380013860.01.T01:CDS 25.0%
!!! AGAAGTATCCATTGAAAATT+GGG + Chr3:46778413-46778432 MsG0380013860.01.T01:CDS 25.0%
!!! CATATAAGCTGTTTTCATAA+GGG - Chr3:46776250-46776269 None:intergenic 25.0%
!!! GATACACATGCTTTAAAAAT+TGG + Chr3:46778622-46778641 MsG0380013860.01.T01:intron 25.0%
!!! GTATATTATAAAGGGCATTA+TGG + Chr3:46776310-46776329 MsG0380013860.01.T01:intron 25.0%
!!! GTTGTTTTTGATAAAGTTTG+TGG - Chr3:46778676-46778695 None:intergenic 25.0%
!!! TAATCACGTTGATAATGTAA+AGG - Chr3:46779577-46779596 None:intergenic 25.0%
!!! TAGTTTTGAACACTTTGTAT+TGG + Chr3:46779542-46779561 MsG0380013860.01.T01:intron 25.0%
!!! TCATATAAGCTGTTTTCATA+AGG - Chr3:46776251-46776270 None:intergenic 25.0%
!!! TTTTTTGGGTTAAAATCATG+AGG + Chr3:46779426-46779445 MsG0380013860.01.T01:intron 25.0%
AAATATCCTCACAATATCCA+TGG - Chr3:46779344-46779363 None:intergenic 30.0%
AAATGTGTAATCAAGGTAGA+TGG - Chr3:46781355-46781374 None:intergenic 30.0%
AAGGTAGTTAAATAGCTAGT+GGG - Chr3:46781444-46781463 None:intergenic 30.0%
ACAATAAGAAACGAGTTACA+TGG + Chr3:46775682-46775701 MsG0380013860.01.T01:five_prime_UTR 30.0%
AGACAAGTTGTATAAAGTAC+TGG - Chr3:46779881-46779900 None:intergenic 30.0%
ATAGTCTGAAAAATGTGAAG+AGG + Chr3:46778810-46778829 MsG0380013860.01.T01:intron 30.0%
ATATTGAACTAGTTGCTAAG+GGG - Chr3:46776738-46776757 None:intergenic 30.0%
ATCCATATGTATACTTAGAG+AGG + Chr3:46780811-46780830 MsG0380013860.01.T01:intron 30.0%
CAAAATCCAAAACATGATGA+CGG + Chr3:46780021-46780040 MsG0380013860.01.T01:CDS 30.0%
CAATAAGAAACGAGTTACAT+GGG + Chr3:46775683-46775702 MsG0380013860.01.T01:five_prime_UTR 30.0%
CAATGGATACTTCTTGAAAT+AGG - Chr3:46778407-46778426 None:intergenic 30.0%
CCTGAACAAAAGTTTATAAG+CGG + Chr3:46776447-46776466 MsG0380013860.01.T01:CDS 30.0%
CTAACTTTGGTTAGAACTTT+AGG + Chr3:46780664-46780683 MsG0380013860.01.T01:intron 30.0%
CTATGCTATTCTATATATGC+AGG + Chr3:46777341-46777360 MsG0380013860.01.T01:intron 30.0%
CTGAACAAAAGTTTATAAGC+GGG + Chr3:46776448-46776467 MsG0380013860.01.T01:CDS 30.0%
GAAAATGGAATTTCTGATCT+TGG + Chr3:46780198-46780217 MsG0380013860.01.T01:CDS 30.0%
GGGATCAAACATATAAAAGA+TGG + Chr3:46780728-46780747 MsG0380013860.01.T01:intron 30.0%
GTTAGTTAGAAACCAATTCA+AGG - Chr3:46778896-46778915 None:intergenic 30.0%
GTTTATTGTTCTGCTAACTT+TGG + Chr3:46780651-46780670 MsG0380013860.01.T01:intron 30.0%
TAGCCATATGTTGAATTAGT+AGG + Chr3:46779703-46779722 MsG0380013860.01.T01:intron 30.0%
TATATCTTAGAACTTTGGGT+TGG - Chr3:46776519-46776538 None:intergenic 30.0%
TGAAACTGATTAGAAGATGA+AGG - Chr3:46780082-46780101 None:intergenic 30.0%
TGAACAAAAGTTTATAAGCG+GGG + Chr3:46776449-46776468 MsG0380013860.01.T01:CDS 30.0%
TGATGTAAAGCATGAATAGA+TGG + Chr3:46778494-46778513 MsG0380013860.01.T01:intron 30.0%
TGTTCGATCTCTTACAAATT+TGG - Chr3:46780767-46780786 None:intergenic 30.0%
TTCCATTCTTAACAAGCTTT+GGG + Chr3:46779192-46779211 MsG0380013860.01.T01:intron 30.0%
TTGTGACAACAATTCAGAAA+TGG - Chr3:46779986-46780005 None:intergenic 30.0%
TTTCCATTCTTAACAAGCTT+TGG + Chr3:46779191-46779210 MsG0380013860.01.T01:intron 30.0%
! AAAAGCAGTAGCATCTTTTA+TGG + Chr3:46777753-46777772 MsG0380013860.01.T01:intron 30.0%
! ACATCTTACCCAATTTTCAA+TGG - Chr3:46778424-46778443 None:intergenic 30.0%
! AGGTTATCTGTGATTGATTT+CGG + Chr3:46776821-46776840 MsG0380013860.01.T01:intron 30.0%
! ATATCTTAGAACTTTGGGTT+GGG - Chr3:46776518-46776537 None:intergenic 30.0%
! ATGGATGCTTCAATTTTGTA+TGG - Chr3:46779772-46779791 None:intergenic 30.0%
! CTGTTTTCATAAGGGATTTT+GGG - Chr3:46776242-46776261 None:intergenic 30.0%
! CTTCAATTTTGTATGGTGAT+TGG - Chr3:46779765-46779784 None:intergenic 30.0%
! GAACAGAAGCATAATCTATT+TGG - Chr3:46780911-46780930 None:intergenic 30.0%
! TACCTTGATTACACATTTTG+TGG + Chr3:46781357-46781376 MsG0380013860.01.T01:CDS 30.0%
! TTGGTGATAAATAGCAAATG+GGG - Chr3:46780508-46780527 None:intergenic 30.0%
!! ACTTACAAACCAGTTTTGTA+AGG + Chr3:46776482-46776501 MsG0380013860.01.T01:intron 30.0%
!! ATGTTCAACTTGTTTTCATG+AGG + Chr3:46776214-46776233 MsG0380013860.01.T01:intron 30.0%
!! ATTAGCATTGACACATATAC+CGG + Chr3:46775984-46776003 MsG0380013860.01.T01:intron 30.0%
!! ATTCTTTTTCATCAAGTCTC+AGG - Chr3:46777137-46777156 None:intergenic 30.0%
!! GGTCAAAACTTGTTACAAAT+TGG + Chr3:46776689-46776708 MsG0380013860.01.T01:intron 30.0%
!!! ATCTAAAGTTGGTGTTTTAC+AGG + Chr3:46779277-46779296 MsG0380013860.01.T01:intron 30.0%
!!! GAAGTTTTGTTTCTTTTGTC+TGG + Chr3:46779916-46779935 MsG0380013860.01.T01:intron 30.0%
!!! TTGTTTTTGCAGTATATGTG+AGG + Chr3:46778381-46778400 MsG0380013860.01.T01:intron 30.0%
AACGCAAGAAAAAGTGAACT+CGG - Chr3:46778763-46778782 None:intergenic 35.0%
AAGATATAGAAGACATGCGA+AGG + Chr3:46777066-46777085 MsG0380013860.01.T01:CDS 35.0%
ACACACGTATTTGTGTACTT+TGG + Chr3:46777168-46777187 MsG0380013860.01.T01:intron 35.0%
ACATCCATTTGAGCAATAAG+AGG + Chr3:46776793-46776812 MsG0380013860.01.T01:intron 35.0%
ACATCTTTAATGTCCGTATG+TGG + Chr3:46778524-46778543 MsG0380013860.01.T01:intron 35.0%
AGAGGAACAAAGTGAAATCA+AGG - Chr3:46778277-46778296 None:intergenic 35.0%
ATATTTCTCCTGCACAGATA+TGG - Chr3:46777824-46777843 None:intergenic 35.0%
ATCAGAGATTTGCACAGAAT+TGG - Chr3:46781205-46781224 None:intergenic 35.0%
ATCCAATGTAAGGCTCTTAA+CGG - Chr3:46776418-46776437 None:intergenic 35.0%
ATCTCTCATTCGTCAGAAAA+TGG + Chr3:46780183-46780202 MsG0380013860.01.T01:CDS 35.0%
ATGCAATTCATATCTTGGAC+AGG + Chr3:46779312-46779331 MsG0380013860.01.T01:CDS 35.0%
ATTCTCGTTGTTGATATGGT+TGG + Chr3:46778994-46779013 MsG0380013860.01.T01:CDS 35.0%
ATTGTCCCTTCTACTTTCAA+TGG + Chr3:46778948-46778967 MsG0380013860.01.T01:CDS 35.0%
CAAACAGACGGTATATAGTA+AGG - Chr3:46776104-46776123 None:intergenic 35.0%
CAAGGTAGTTAAATAGCTAG+TGG - Chr3:46781445-46781464 None:intergenic 35.0%
CAATCTACAGCTTGAGAAAA+TGG + Chr3:46781001-46781020 MsG0380013860.01.T01:intron 35.0%
CATCCATTTGAGCAATAAGA+GGG + Chr3:46776794-46776813 MsG0380013860.01.T01:intron 35.0%
CTAACTCAACCTTACAAAAC+TGG - Chr3:46776494-46776513 None:intergenic 35.0%
CTATTCTATATATGCAGGCA+GGG + Chr3:46777346-46777365 MsG0380013860.01.T01:intron 35.0%
CTGTGGATATATCCTTGAAT+TGG + Chr3:46778881-46778900 MsG0380013860.01.T01:intron 35.0%
CTTACTATATACCGTCTGTT+TGG + Chr3:46776102-46776121 MsG0380013860.01.T01:intron 35.0%
GACCACAAAATGTGTAATCA+AGG - Chr3:46781362-46781381 None:intergenic 35.0%
GACGATACCAAATAATCGAA+GGG + Chr3:46777702-46777721 MsG0380013860.01.T01:intron 35.0%
GAGGAACAAAGTGAAATCAA+GGG - Chr3:46778276-46778295 None:intergenic 35.0%
GATAACCATAAGTCATTGAG+TGG - Chr3:46778356-46778375 None:intergenic 35.0%
GGTTGAAATGGAGATAGAAA+AGG - Chr3:46775957-46775976 None:intergenic 35.0%
GTAAGGATGCTACATATTGA+AGG - Chr3:46776087-46776106 None:intergenic 35.0%
GTATAAGCTATTCCTATAGC+AGG - Chr3:46776396-46776415 None:intergenic 35.0%
GTGTCAATGCTAATACCTTT+GGG - Chr3:46775978-46775997 None:intergenic 35.0%
GTTAGCCATTGAAAGTAGAA+GGG - Chr3:46778956-46778975 None:intergenic 35.0%
TATTATTGTCGATCAACGAC+CGG - Chr3:46777025-46777044 None:intergenic 35.0%
TCTTGTAGAATAGTGCCAAA+AGG - Chr3:46778151-46778170 None:intergenic 35.0%
TGACATTCTCGTTGTTGATA+TGG + Chr3:46778990-46779009 MsG0380013860.01.T01:CDS 35.0%
TGACGATACCAAATAATCGA+AGG + Chr3:46777701-46777720 MsG0380013860.01.T01:intron 35.0%
TGCCTCTCTAAGTATACATA+TGG - Chr3:46780816-46780835 None:intergenic 35.0%
TGTATCCACTCAATGACTTA+TGG + Chr3:46778348-46778367 MsG0380013860.01.T01:intron 35.0%
TGTGTCAATGCTAATACCTT+TGG - Chr3:46775979-46775998 None:intergenic 35.0%
TGTTACAGAAAAGCAAGATG+TGG - Chr3:46777272-46777291 None:intergenic 35.0%
TTAATGTCCGTATGTGGTTT+AGG + Chr3:46778530-46778549 MsG0380013860.01.T01:intron 35.0%
! AAACAAATTTGAGGGCCTTT+TGG + Chr3:46778207-46778226 MsG0380013860.01.T01:intron 35.0%
! AGTTGAAAAACAGTACCGAA+TGG - Chr3:46775912-46775931 None:intergenic 35.0%
! CCGCTTATAAACTTTTGTTC+AGG - Chr3:46776450-46776469 None:intergenic 35.0%
! CTCTGTTATTTGCAATCCAA+TGG - Chr3:46781027-46781046 None:intergenic 35.0%
! CTGATTTGTATAGACAGAAG+AGG - Chr3:46777553-46777572 None:intergenic 35.0%
! TGCATCTAGAGCTATTCATT+TGG - Chr3:46779610-46779629 None:intergenic 35.0%
! TTGAACACTTTGTATTGGCA+TGG + Chr3:46779547-46779566 MsG0380013860.01.T01:intron 35.0%
!! AGTTTGCTAAAAGTGGTAAG+AGG - Chr3:46780482-46780501 None:intergenic 35.0%
!! CAAAACTGGTTTGTAAGTTG+AGG - Chr3:46776480-46776499 None:intergenic 35.0%
!! CAGTTTTGTAAGGTTGAGTT+AGG + Chr3:46776492-46776511 MsG0380013860.01.T01:intron 35.0%
!! CTAATACCTTTGGGTTGAAA+TGG - Chr3:46775969-46775988 None:intergenic 35.0%
!! GCTGTTTTCATAAGGGATTT+TGG - Chr3:46776243-46776262 None:intergenic 35.0%
!! GGTATAGTGATTGATAGTGT+TGG + Chr3:46779213-46779232 MsG0380013860.01.T01:intron 35.0%
!! TACCCAAAGCTTGTTAAGAA+TGG - Chr3:46779197-46779216 None:intergenic 35.0%
!! TATATGTCTTTGGAGCATCT+GGG + Chr3:46778069-46778088 MsG0380013860.01.T01:intron 35.0%
!! TTATATGTCTTTGGAGCATC+TGG + Chr3:46778068-46778087 MsG0380013860.01.T01:intron 35.0%
!!! GTTCACTTTTTCTTGCGTTT+TGG + Chr3:46778764-46778783 MsG0380013860.01.T01:intron 35.0%
!!! TGAGGACATCTTGTTTTGTT+TGG + Chr3:46777089-46777108 MsG0380013860.01.T01:intron 35.0%
AAGAAACGAGTTACATGGGA+AGG + Chr3:46775687-46775706 MsG0380013860.01.T01:five_prime_UTR 40.0%
AAGAGCCTGCAAAGCTATAA+AGG + Chr3:46780266-46780285 MsG0380013860.01.T01:CDS 40.0%
AATATGTGCATCAGTCAGCA+TGG + Chr3:46780155-46780174 MsG0380013860.01.T01:intron 40.0%
AATGCACTCATTTGCATGCA+CGG - Chr3:46781278-46781297 None:intergenic 40.0%
AATGTCCAAGTATCCAAGTC+TGG - Chr3:46780450-46780469 None:intergenic 40.0%
AATTATTGCTGCACCAGACT+TGG + Chr3:46780434-46780453 MsG0380013860.01.T01:CDS 40.0%
ACTAGTTGCTAAGGGGTTAT+CGG - Chr3:46776731-46776750 None:intergenic 40.0%
AGACTTGGATACTTGGACAT+TGG + Chr3:46780449-46780468 MsG0380013860.01.T01:CDS 40.0%
AGCTATAAAGGCTGGAGAAA+AGG + Chr3:46780278-46780297 MsG0380013860.01.T01:CDS 40.0%
AGTCTGGTGCAGCAATAATT+AGG - Chr3:46780434-46780453 None:intergenic 40.0%
ATCAAGGTAGATGGTAGAGT+TGG - Chr3:46781346-46781365 None:intergenic 40.0%
ATCCTCACAATATCCATGGA+TGG - Chr3:46779340-46779359 None:intergenic 40.0%
ATGCAAATGAGTGCATTTGG+GGG + Chr3:46781281-46781300 MsG0380013860.01.T01:CDS 40.0%
CAGCCAAATGGCTAAAAGTA+TGG + Chr3:46781381-46781400 MsG0380013860.01.T01:CDS 40.0%
CATGCAAATGAGTGCATTTG+GGG + Chr3:46781280-46781299 MsG0380013860.01.T01:CDS 40.0%
CATTTGAGCAATAAGAGGGA+GGG + Chr3:46776798-46776817 MsG0380013860.01.T01:intron 40.0%
CGTATCAAATGTTGCGCTAT+TGG - Chr3:46777407-46777426 None:intergenic 40.0%
CGTTAGCCATTGAAAGTAGA+AGG - Chr3:46778957-46778976 None:intergenic 40.0%
CTAATTCAGATTCTTGCGTG+TGG + Chr3:46778921-46778940 MsG0380013860.01.T01:intron 40.0%
CTATCTCCATTTCAACCCAA+AGG + Chr3:46775960-46775979 MsG0380013860.01.T01:CDS 40.0%
CTGTTCACTCAGCATGTTAA+CGG + Chr3:46780925-46780944 MsG0380013860.01.T01:intron 40.0%
CTTCTATATCTTCACCAGTG+AGG - Chr3:46777058-46777077 None:intergenic 40.0%
GATTGCAAATAACAGAGCCT+TGG + Chr3:46781030-46781049 MsG0380013860.01.T01:intron 40.0%
GCATGCAAATGAGTGCATTT+GGG + Chr3:46781279-46781298 MsG0380013860.01.T01:CDS 40.0%
GCCTTACATTGGATGAGATA+AGG + Chr3:46776424-46776443 MsG0380013860.01.T01:CDS 40.0%
GCCTTATCTCATCCAATGTA+AGG - Chr3:46776428-46776447 None:intergenic 40.0%
GCTATTCTATATATGCAGGC+AGG + Chr3:46777345-46777364 MsG0380013860.01.T01:intron 40.0%
GTAGTCACCCTTCGATTATT+TGG - Chr3:46777712-46777731 None:intergenic 40.0%
GTCTTGCTTGATATCAACGA+TGG + Chr3:46775717-46775736 MsG0380013860.01.T01:five_prime_UTR 40.0%
TAAAAGGCTTTCCTCAAAGC+CGG - Chr3:46781500-46781519 None:intergenic 40.0%
TAAAGATGCCACACATCTAC+AGG - Chr3:46778791-46778810 None:intergenic 40.0%
TAAGCGACGAAATCTGCAAA+AGG + Chr3:46779368-46779387 MsG0380013860.01.T01:CDS 40.0%
TACATCTCGATCCACCATTT+AGG + Chr3:46776912-46776931 MsG0380013860.01.T01:intron 40.0%
TACCGTTAAGAGCCTTACAT+TGG + Chr3:46776413-46776432 MsG0380013860.01.T01:CDS 40.0%
TATTTGGCATTCAGTGCCAA+AGG - Chr3:46780895-46780914 None:intergenic 40.0%
TCTCTGACCTAAACCACATA+CGG - Chr3:46778540-46778559 None:intergenic 40.0%
TGCATGCAAATGAGTGCATT+TGG + Chr3:46781278-46781297 MsG0380013860.01.T01:CDS 40.0%
TGTTTCAACCTCCTGATACA+AGG + Chr3:46781467-46781486 MsG0380013860.01.T01:three_prime_UTR 40.0%
TTGTATCAGGAGGTTGAAAC+AGG - Chr3:46781468-46781487 None:intergenic 40.0%
! ACATTTTGTGGTCAGCCAAA+TGG + Chr3:46781369-46781388 MsG0380013860.01.T01:CDS 40.0%
! ACGATGCTTTTACTCAATGC+TGG - Chr3:46775584-46775603 None:intergenic 40.0%
! AGAGTAAAAACGAAGAGTGC+AGG - Chr3:46776875-46776894 None:intergenic 40.0%
! GATTGATTTCGGCTTCTTTG+TGG + Chr3:46776832-46776851 MsG0380013860.01.T01:intron 40.0%
! GGACGTCTCATAAGTACTTT+TGG - Chr3:46777874-46777893 None:intergenic 40.0%
! TCTGGGTTTTGCTCTGATAA+TGG + Chr3:46778086-46778105 MsG0380013860.01.T01:intron 40.0%
! TGGCCATACTTTTAGCCATT+TGG - Chr3:46781387-46781406 None:intergenic 40.0%
! TTGACTCGTGGAAGGAAAAT+GGG + Chr3:46780316-46780335 MsG0380013860.01.T01:CDS 40.0%
! TTGGAGTATCATTCTCTCTG+TGG + Chr3:46778864-46778883 MsG0380013860.01.T01:intron 40.0%
! TTGTTGTTGTCTCCTGCTAT+AGG + Chr3:46776381-46776400 MsG0380013860.01.T01:intron 40.0%
!! AATCCAAAACATGATGACGG+CGG + Chr3:46780024-46780043 MsG0380013860.01.T01:CDS 40.0%
!! AGAAATCATTGACTCGTGGA+AGG + Chr3:46780308-46780327 MsG0380013860.01.T01:CDS 40.0%
!! ATTGACTCGTGGAAGGAAAA+TGG + Chr3:46780315-46780334 MsG0380013860.01.T01:CDS 40.0%
!! CTCAAGAAATCATTGACTCG+TGG + Chr3:46780304-46780323 MsG0380013860.01.T01:CDS 40.0%
!! GGAAGGAAAATGGGTTTTCT+AGG + Chr3:46780325-46780344 MsG0380013860.01.T01:CDS 40.0%
!!! GCTTTTATTTTGATCCCCGA+GGG - Chr3:46777739-46777758 None:intergenic 40.0%
!!! TGCTTTTATTTTGATCCCCG+AGG - Chr3:46777740-46777759 None:intergenic 40.0%
ACCGAATGGACAACCAATCA+TGG - Chr3:46775898-46775917 None:intergenic 45.0%
ACCTGATATTCACGTAGCCA+AGG - Chr3:46781050-46781069 None:intergenic 45.0%
ACTATCAGCAAATGCCGGAA+GGG - Chr3:46777600-46777619 None:intergenic 45.0%
ATAGAAGACATGCGAAGGTG+AGG + Chr3:46777071-46777090 MsG0380013860.01.T01:intron 45.0%
ATCTTCACCAGTGAGGCTTT+GGG - Chr3:46777051-46777070 None:intergenic 45.0%
ATGCACTCATTTGCATGCAC+GGG - Chr3:46781277-46781296 None:intergenic 45.0%
CACCATCCATGGATATTGTG+AGG + Chr3:46779335-46779354 MsG0380013860.01.T01:CDS 45.0%
CAGCTTGAGAAAATGGCCAT+TGG + Chr3:46781008-46781027 MsG0380013860.01.T01:intron 45.0%
CCATTTGAGCAATAAGAGGG+AGG + Chr3:46776797-46776816 MsG0380013860.01.T01:intron 45.0%
CCTCCCTCTTATTGCTCAAA+TGG - Chr3:46776800-46776819 None:intergenic 45.0%
CCTGATACAAGGATCGAAAC+CGG + Chr3:46781478-46781497 MsG0380013860.01.T01:three_prime_UTR 45.0%
CTCGTTGTTGATATGGTTGG+TGG + Chr3:46778997-46779016 MsG0380013860.01.T01:CDS 45.0%
GAAAAAGAAACTGACGCTGC+AGG - Chr3:46775771-46775790 None:intergenic 45.0%
GTTTCGATCCTTGTATCAGG+AGG - Chr3:46781478-46781497 None:intergenic 45.0%
GTTTGTGTCAGTGTCGTATC+CGG - Chr3:46776006-46776025 None:intergenic 45.0%
TACTCTCACTCTAACCTGCA+TGG + Chr3:46776889-46776908 MsG0380013860.01.T01:intron 45.0%
TATCTTCACCAGTGAGGCTT+TGG - Chr3:46777052-46777071 None:intergenic 45.0%
TTGCTCACTACAGCCATGAT+TGG + Chr3:46775882-46775901 MsG0380013860.01.T01:exon 45.0%
TTGGGGGTTACATTCTCAGT+GGG + Chr3:46781297-46781316 MsG0380013860.01.T01:CDS 45.0%
TTGTTCATGCACGTTGCTAG+AGG - Chr3:46780984-46781003 None:intergenic 45.0%
TTTGGGGGTTACATTCTCAG+TGG + Chr3:46781296-46781315 MsG0380013860.01.T01:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - Chr3:46776359-46776378 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - Chr3:46776360-46776379 None:intergenic 45.0%
! GCCATGATTGGTTGTCCATT+CGG + Chr3:46775894-46775913 MsG0380013860.01.T01:exon 45.0%
! TCAACTCACTGGTGAGTTGA+GGG + Chr3:46776995-46777014 MsG0380013860.01.T01:CDS 45.0%
! TCCAGCCTTTATAGCTTTGC+AGG - Chr3:46780274-46780293 None:intergenic 45.0%
!! AAGGGGTTATCGGCTTATCA+TGG - Chr3:46776721-46776740 None:intergenic 45.0%
!! AGATAGAAAAGGAGCGCCAT+CGG - Chr3:46775946-46775965 None:intergenic 45.0%
!! AGTTGGTGTTTTACAGGCAC+TGG + Chr3:46779283-46779302 MsG0380013860.01.T01:intron 45.0%
!! GGGGAAGAGTTTGCTAAAAG+TGG - Chr3:46780489-46780508 None:intergenic 45.0%
!! GTGGACTTGTTAGCAAGTCT+TGG - Chr3:46777578-46777597 None:intergenic 45.0%
!! GTTTTGGACCTGTAGATGTG+TGG + Chr3:46778780-46778799 MsG0380013860.01.T01:intron 45.0%
AAAGGTCACCTTCGAGCAAC+AGG - Chr3:46777895-46777914 None:intergenic 50.0%
AAGGGTGACTACTTCACCCT+CGG + Chr3:46777720-46777739 MsG0380013860.01.T01:intron 50.0%
AATACTGCCCAAAGCCTCAC+TGG + Chr3:46777041-46777060 MsG0380013860.01.T01:CDS 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - Chr3:46776347-46776366 None:intergenic 50.0%
ATGCACGGGTGAGTTCTTGA+AGG - Chr3:46781263-46781282 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG + Chr3:46776346-46776365 MsG0380013860.01.T01:intron 50.0%
ATGTGCATCAGTCAGCATGG+AGG + Chr3:46780158-46780177 MsG0380013860.01.T01:intron 50.0%
CACTATCAGCAAATGCCGGA+AGG - Chr3:46777601-46777620 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + Chr3:46776358-46776377 MsG0380013860.01.T01:intron 50.0%
CCGGTTTCGATCCTTGTATC+AGG - Chr3:46781481-46781500 None:intergenic 50.0%
CGCTCACTATCAGCAAATGC+CGG - Chr3:46777605-46777624 None:intergenic 50.0%
CTGCACCAGACTTGGATACT+TGG + Chr3:46780442-46780461 MsG0380013860.01.T01:CDS 50.0%
GAAGCTCACCATATCTGTGC+AGG + Chr3:46777813-46777832 MsG0380013860.01.T01:CDS 50.0%
GAGTTGACCGTCTTTGGACT+CGG - Chr3:46776982-46777001 None:intergenic 50.0%
GCCTGCAAAGCTATAAAGGC+TGG + Chr3:46780270-46780289 MsG0380013860.01.T01:CDS 50.0%
GCCTTGGCTACGTGAATATC+AGG + Chr3:46781046-46781065 MsG0380013860.01.T01:intron 50.0%
GGCTCTTAGAGCAGGAAATG+TGG - Chr3:46780253-46780272 None:intergenic 50.0%
GTCAACTCACTGGTGAGTTG+AGG + Chr3:46776994-46777013 MsG0380013860.01.T01:CDS 50.0%
TCAGGAGGTTGAAACAGGCA+AGG - Chr3:46781463-46781482 None:intergenic 50.0%
TCCAAAGACGGTCAACTCAC+TGG + Chr3:46776984-46777003 MsG0380013860.01.T01:CDS 50.0%
TGACCCCACTTAGTGGGATA+AGG + Chr3:46776353-46776372 MsG0380013860.01.T01:intron 50.0%
TGCTAACAAGTCCACCCTTC+CGG + Chr3:46777583-46777602 MsG0380013860.01.T01:intron 50.0%
TGGATCGAGATGTACCATGC+AGG - Chr3:46776906-46776925 None:intergenic 50.0%
TGTAGCTGACCCCACTTAGT+GGG + Chr3:46776347-46776366 MsG0380013860.01.T01:intron 50.0%
TTCCAAGCCGAGTCCAAAGA+CGG + Chr3:46776972-46776991 MsG0380013860.01.T01:CDS 50.0%
TTGAGCAATAAGAGGGAGGG+AGG + Chr3:46776801-46776820 MsG0380013860.01.T01:intron 50.0%
! AAGGATCGAAACCGGCTTTG+AGG + Chr3:46781486-46781505 MsG0380013860.01.T01:three_prime_UTR 50.0%
! ACACCGCCGTCATCATGTTT+TGG - Chr3:46780030-46780049 None:intergenic 50.0%
! ACCAGTGAGTTGACCGTCTT+TGG - Chr3:46776988-46777007 None:intergenic 50.0%
! ATATGCAGGCAGGGTGCTAA+GGG + Chr3:46777355-46777374 MsG0380013860.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - Chr3:46776361-46776380 None:intergenic 50.0%
! CTACGTGCTGTCATGCCTTT+TGG + Chr3:46778133-46778152 MsG0380013860.01.T01:intron 50.0%
! TATATGCAGGCAGGGTGCTA+AGG + Chr3:46777354-46777373 MsG0380013860.01.T01:intron 50.0%
! TGAAGAGGTGTGTGCATGTG+TGG + Chr3:46778825-46778844 MsG0380013860.01.T01:intron 50.0%
!! AAAACATGATGACGGCGGTG+TGG + Chr3:46780029-46780048 MsG0380013860.01.T01:intron 50.0%
!! ATGGTTGGTGGCCTTCTTAC+TGG + Chr3:46779009-46779028 MsG0380013860.01.T01:CDS 50.0%
!! GATAGAAAAGGAGCGCCATC+GGG - Chr3:46775945-46775964 None:intergenic 50.0%
AAACTGACGCTGCAGGAGAG+AGG - Chr3:46775764-46775783 None:intergenic 55.0%
AGGGTGACTACTTCACCCTC+GGG + Chr3:46777721-46777740 MsG0380013860.01.T01:intron 55.0%
ATCAGCAAATGCCGGAAGGG+TGG - Chr3:46777597-46777616 None:intergenic 55.0%
CAACTCGACACTTCTCCCGA+TGG + Chr3:46775927-46775946 MsG0380013860.01.T01:CDS 55.0%
CTGCCACAGCACCAGTAAGA+AGG - Chr3:46779023-46779042 None:intergenic 55.0%
GCTTTGCAGGCTCTTAGAGC+AGG - Chr3:46780261-46780280 None:intergenic 55.0%
TCTTGGACAGGCACCATCCA+TGG + Chr3:46779324-46779343 MsG0380013860.01.T01:CDS 55.0%
TGAGACGTCCTGTTGCTCGA+AGG + Chr3:46777884-46777903 MsG0380013860.01.T01:CDS 55.0%
! CTGGTGAGTTGAGGGACAAC+CGG + Chr3:46777003-46777022 MsG0380013860.01.T01:CDS 55.0%
! TGGCCTTCTTACTGGTGCTG+TGG + Chr3:46779017-46779036 MsG0380013860.01.T01:CDS 55.0%
GACCGTCTTTGGACTCGGCT+TGG - Chr3:46776977-46776996 None:intergenic 60.0%
GGGTGACTACTTCACCCTCG+GGG + Chr3:46777722-46777741 MsG0380013860.01.T01:intron 60.0%
! GCTGTGGCAGAGCGTTTAGG+AGG + Chr3:46779033-46779052 MsG0380013860.01.T01:CDS 60.0%
! GGTGCTGTGGCAGAGCGTTT+AGG + Chr3:46779030-46779049 MsG0380013860.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 46775577 46781526 46775577 ID=MsG0380013860.01;Name=MsG0380013860.01
Chr3 mRNA 46775577 46781526 46775577 ID=MsG0380013860.01.T01;Parent=MsG0380013860.01;Name=MsG0380013860.01.T01;_AED=0.27;_eAED=0.27;_QI=238|0.53|0.64|0.92|0.92|0.85|14|109|455
Chr3 exon 46775577 46775775 46775577 ID=MsG0380013860.01.T01:exon:25904;Parent=MsG0380013860.01.T01
Chr3 exon 46775858 46775981 46775858 ID=MsG0380013860.01.T01:exon:25905;Parent=MsG0380013860.01.T01
Chr3 exon 46776403 46776498 46776403 ID=MsG0380013860.01.T01:exon:25906;Parent=MsG0380013860.01.T01
Chr3 exon 46776934 46777087 46776934 ID=MsG0380013860.01.T01:exon:25907;Parent=MsG0380013860.01.T01
Chr3 exon 46777363 46777445 46777363 ID=MsG0380013860.01.T01:exon:25908;Parent=MsG0380013860.01.T01
Chr3 exon 46777803 46777905 46777803 ID=MsG0380013860.01.T01:exon:25909;Parent=MsG0380013860.01.T01
Chr3 exon 46778393 46778434 46778393 ID=MsG0380013860.01.T01:exon:25910;Parent=MsG0380013860.01.T01
Chr3 exon 46778930 46779054 46778930 ID=MsG0380013860.01.T01:exon:25911;Parent=MsG0380013860.01.T01
Chr3 exon 46779299 46779389 46779299 ID=MsG0380013860.01.T01:exon:25912;Parent=MsG0380013860.01.T01
Chr3 exon 46779969 46780045 46779969 ID=MsG0380013860.01.T01:exon:25913;Parent=MsG0380013860.01.T01
Chr3 exon 46780169 46780346 46780169 ID=MsG0380013860.01.T01:exon:25914;Parent=MsG0380013860.01.T01
Chr3 exon 46780431 46780536 46780431 ID=MsG0380013860.01.T01:exon:25915;Parent=MsG0380013860.01.T01
Chr3 exon 46781068 46781131 46781068 ID=MsG0380013860.01.T01:exon:25916;Parent=MsG0380013860.01.T01
Chr3 exon 46781254 46781526 46781254 ID=MsG0380013860.01.T01:exon:25917;Parent=MsG0380013860.01.T01
Chr3 five_prime_UTR 46775577 46775775 46775577 ID=MsG0380013860.01.T01:five_prime_utr;Parent=MsG0380013860.01.T01
Chr3 five_prime_UTR 46775858 46775896 46775858 ID=MsG0380013860.01.T01:five_prime_utr;Parent=MsG0380013860.01.T01
Chr3 CDS 46775897 46775981 46775897 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46776403 46776498 46776403 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46776934 46777087 46776934 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46777363 46777445 46777363 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46777803 46777905 46777803 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46778393 46778434 46778393 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46778930 46779054 46778930 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46779299 46779389 46779299 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46779969 46780045 46779969 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46780169 46780346 46780169 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46780431 46780536 46780431 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46781068 46781131 46781068 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 CDS 46781254 46781417 46781254 ID=MsG0380013860.01.T01:cds;Parent=MsG0380013860.01.T01
Chr3 three_prime_UTR 46781418 46781526 46781418 ID=MsG0380013860.01.T01:three_prime_utr;Parent=MsG0380013860.01.T01
Gene Sequence

>MsG0380013860.01.T01

ATGATTGGTTGTCCATTCGGTACTGTTTTTCAACTCGACACTTCTCCCGATGGCGCTCCTTTTCTATCTCCATTTCAACCCAAAGGAATAGCTTATACCGTTAAGAGCCTTACATTGGATGAGATAAGGCCTGAACAAAAGTTTATAAGCGGGGACAGTCCTCAACTTACAAACCAGTTTTGTAATTATAATAACACTGAAGAAATAAAAGATGGTCAATTCCAAGCCGAGTCCAAAGACGGTCAACTCACTGGTGAGTTGAGGGACAACCGGTCGTTGATCGACAATAATACTGCCCAAAGCCTCACTGGTGAAGATATAGAAGACATGCGAAGGCAGGGTGCTAAGGGTGATGAAATAATTGAAGCTCTCATTGCCAATAGCGCAACATTTGATACGAAAACGTCATTCTCACAGTCGAATGAACTGAAGCTCACCATATCTGTGCAGGAGAAATATAGACTTAAGAAACAGAAGAAATATGCACCAAAAGTACTTATGAGACGTCCTGTTGCTCGAAGTATATGTGAGGCCTATTTCAAGAAGTATCCATTGAAAATTGGATTCTTGCGTGTGGACACATTGTCCCTTCTACTTTCAATGGCTAACGTTTCTTCAAATTCTGACATTCTCGTTGTTGATATGGTTGGTGGCCTTCTTACTGGTGCTGTGGCAGAGCGTTTAGGAGGCACTGGTTTTGTATGCAATTCATATCTTGGACAGGCACCATCCATGGATATTGTGAGGATATTTAATTTAAGCGACGAAATCTGCAAAAGAATTGTAAGGTCTTCCATTTCTGAATTGTTGTCACAAAATGAATCATCTCAACAAAATCCAAAACATGATGACGGCGTCAGCATGGAGGAAATCTCTCATTCGTCAGAAAATGGAATTTCTGATCTTGGTGCTGACAATGCTGAAAATACTGAGAATTCCACATTTCCTGCTCTAAGAGCCTGCAAAGCTATAAAGGCTGGAGAAAAGGCATCTCAAGAAATCATTGACTCGTGGAAGGAAAATGGGTTTTCTAGCCTAATTATTGCTGCACCAGACTTGGATACTTGGACATTGGTTAAAGACCTCTTACCACTTTTAGCAAACTCTTCCCCATTTGCTATTTATCACCAATATCTTCAGGTATTTAGCTATTTTTGTCAATATTATGAAATTATAAGTATTTTGAACTCCTTTATTTACAAAAGTACTTCCTTCAAGAACTCACCCGTGCATGCAAATGAGTGCATTTGGGGGTTACATTCTCAGTGGGACAAAGATCTGCAGCAGCTGATTCCAACTCTACCATCTACCTTGATTACACATTTTGTGGTCAGCCAAATGGCTAAAAGTATGGCCAGTGTACACTAG
Protein sequence

>MsG0380013860.01.T01

MIGCPFGTVFQLDTSPDGAPFLSPFQPKGIAYTVKSLTLDEIRPEQKFISGDSPQLTNQFCNYNNTEEIKDGQFQAESKDGQLTGELRDNRSLIDNNTAQSLTGEDIEDMRRQGAKGDEIIEALIANSATFDTKTSFSQSNELKLTISVQEKYRLKKQKKYAPKVLMRRPVARSICEAYFKKYPLKIGFLRVDTLSLLLSMANVSSNSDILVVDMVGGLLTGAVAERLGGTGFVCNSYLGQAPSMDIVRIFNLSDEICKRIVRSSISELLSQNESSQQNPKHDDGVSMEEISHSSENGISDLGADNAENTENSTFPALRACKAIKAGEKASQEIIDSWKENGFSSLIIAAPDLDTWTLVKDLLPLLANSSPFAIYHQYLQVFSYFCQYYEIISILNSFIYKSTSFKNSPVHANECIWGLHSQWDKDLQQLIPTLPSTLITHFVVSQMAKSMASVH*