AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009908.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009908.01.T01 MTR_2g072830 85.619 299 31 3 1 299 1 287 9.74e-177 498
MsG0280009908.01.T01 MTR_2g072830 98.947 95 1 0 338 432 266 360 6.22e-56 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009908.01.T01 AT1G17160 56.206 427 107 7 19 429 13 375 2.24e-152 437
MsG0280009908.01.T01 AT1G17160 53.500 400 106 7 19 402 13 348 9.69e-133 386
MsG0280009908.01.T01 AT5G43910 23.810 378 233 8 64 422 13 354 1.68e-12 68.9

Find 142 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTAACTCACCAATTTA+TGG 0.092451 2:-60609016 None:intergenic
AAGGAATTGGATTGGATTAA+TGG 0.179404 2:-60605884 None:intergenic
GGATGGTTCAGGTTTGATTT+TGG 0.187953 2:+60610929 MsG0280009908.01.T01:three_prime_UTR
AAGGGTTGTTTGGTTCATTT+TGG 0.199327 2:-60605794 None:intergenic
ATAAGACAAGGTTAGTTTAA+AGG 0.204058 2:+60610845 MsG0280009908.01.T01:three_prime_UTR
AGAAATTTCAAAACCTTGTT+TGG 0.216905 2:-60609298 None:intergenic
AAAATCTAACCATGACTATT+AGG 0.236511 2:-60610873 None:intergenic
CTTAGGTAAATTGTATAAAA+TGG 0.238377 2:+60610908 MsG0280009908.01.T01:three_prime_UTR
TAAGACAAGGTTAGTTTAAA+GGG 0.302864 2:+60610846 MsG0280009908.01.T01:three_prime_UTR
TTGGATTGGATTAATGGGTT+TGG 0.305946 2:-60605878 None:intergenic
GCGACCAAGTTCACTTTCAT+TGG 0.309537 2:-60608937 None:intergenic
GATAAAAGTATAATAACTTT+TGG 0.315388 2:+60610693 MsG0280009908.01.T01:intron
AGTGAACTTGGTCGCCTTAC+AGG 0.324230 2:+60608945 MsG0280009908.01.T01:CDS
AAAATGGCAGGTTGCTGAAT+TGG 0.327018 2:-60609927 None:intergenic
ACCTATTCCACAAGAATTAC+TGG 0.332773 2:+60608893 MsG0280009908.01.T01:CDS
TTCTCTATGTGTTCAAGTTA+AGG 0.339622 2:+60610162 MsG0280009908.01.T01:CDS
AAATCTGAGGCATTCCTTCT+TGG 0.343182 2:-60610030 None:intergenic
TTGAGTTTGGTTGATTTGTA+AGG 0.344764 2:-60605837 None:intergenic
TTGTATAAAATGGATGGTTC+AGG 0.348682 2:+60610918 MsG0280009908.01.T01:three_prime_UTR
TGTAGAGATCGACCGCCTTC+CGG 0.349083 2:+60606029 MsG0280009908.01.T01:CDS
ACTTGAACATTAACGAAATC+AGG 0.349385 2:-60608032 None:intergenic
CAACAATAACAATAGAATTC+TGG 0.354205 2:-60607914 None:intergenic
CAAAACCTTGTTTGGGAAGT+AGG 0.364900 2:-60609290 None:intergenic
GAGTGTTGAATCGAAGGAAT+TGG 0.374705 2:-60605897 None:intergenic
GTTCTTCTCCTTCTATGAAA+AGG 0.376450 2:-60609905 None:intergenic
TGCTGCAAAATGCCATAAAT+TGG 0.377917 2:+60609004 MsG0280009908.01.T01:CDS
TCCAGTAATTCTTGTGGAAT+AGG 0.380540 2:-60608894 None:intergenic
TATGAAAAGGGCAGATCCTT+TGG 0.380777 2:-60609892 None:intergenic
GAGATTGTTTCGCCTTCTTC+CGG 0.389244 2:-60606048 None:intergenic
AGGAATTGGATTGGATTAAT+GGG 0.389540 2:-60605883 None:intergenic
AAGGAATGCCTCAGATTTGC+CGG 0.394393 2:+60610035 MsG0280009908.01.T01:CDS
TCTCTATGTGTTCAAGTTAA+GGG 0.396310 2:+60610163 MsG0280009908.01.T01:CDS
GTGATGAAAGTGTTTGAGTT+TGG 0.398090 2:-60605850 None:intergenic
CACTTCGAGATGGTGGTGTT+CGG 0.407353 2:+60607823 MsG0280009908.01.T01:CDS
CAGAATTCTATTGTTATTGT+TGG 0.408758 2:+60607915 MsG0280009908.01.T01:CDS
TGCTTAGGTGGCAGAGTTTG+AGG 0.415526 2:-60607960 None:intergenic
TTTACAGCGAAACGCAGAAC+TGG 0.417675 2:-60605949 None:intergenic
GAAATTTCAAAACCTTGTTT+GGG 0.419394 2:-60609297 None:intergenic
TACATAAATGTCGGCATTGG+CGG 0.423987 2:-60606010 None:intergenic
CGACCAAGTTCACTTTCATT+GGG 0.429267 2:-60608936 None:intergenic
GTTGATTTGTAAGGTGGTAA+TGG 0.431089 2:-60605828 None:intergenic
GTGGTGATGAAAGGGTTGTT+TGG 0.433676 2:-60605804 None:intergenic
TCCGACTTACTTCCTTGGTC+AGG 0.434049 2:+60606143 MsG0280009908.01.T01:CDS
TTTGCTGTGGCCTTGGTGGA+GGG 0.436917 2:+60610002 MsG0280009908.01.T01:CDS
GTGGTGCTAATGTGAGTTGT+TGG 0.437540 2:+60607937 MsG0280009908.01.T01:CDS
GTGCCAGTAATATTTGATGC+TGG 0.439488 2:+60608858 MsG0280009908.01.T01:CDS
AACTTCTCAATCATCATTGA+AGG 0.441155 2:+60610224 MsG0280009908.01.T01:CDS
AATTCTATTGTTATTGTTGG+TGG 0.445042 2:+60607918 MsG0280009908.01.T01:CDS
GTTGTGCCTTCTGCTCCAAC+TGG 0.453426 2:+60607861 MsG0280009908.01.T01:CDS
AGATTTCCTATCCGGCATGC+TGG 0.453661 2:-60610194 None:intergenic
TTGGAGGTTGTTTCCTCCGC+AGG 0.458050 2:+60607984 MsG0280009908.01.T01:CDS
ACCATTTCTTTCTTATCCAC+AGG 0.458545 2:-60609191 None:intergenic
TTGAATCGAAGGAATTGGAT+TGG 0.461198 2:-60605892 None:intergenic
AAAACCTTGTTTGGGAAGTA+GGG 0.461795 2:-60609289 None:intergenic
TCCTGTGGATAAGAAAGAAA+TGG 0.464583 2:+60609190 MsG0280009908.01.T01:CDS
TCGAGAACAGATTTCCTATC+CGG 0.464837 2:-60610202 None:intergenic
CCTATCCGGCATGCTGGGAA+TGG 0.464959 2:-60610188 None:intergenic
AAAAGTGGGCAGACGTTAGC+CGG 0.466722 2:+60606075 MsG0280009908.01.T01:CDS
ATCGACCGCCTTCCGGAAGA+AGG 0.472527 2:+60606036 MsG0280009908.01.T01:CDS
AGTCCCAATGAAAGTGAACT+TGG 0.472556 2:+60608933 MsG0280009908.01.T01:CDS
AAAACAGTCATCGATACAAC+TGG 0.475052 2:+60609954 MsG0280009908.01.T01:CDS
TTCTTCTCCTTCTATGAAAA+GGG 0.482858 2:-60609904 None:intergenic
ACCGGTGGAGTCTGTGAGGA+TGG 0.488517 2:-60605973 None:intergenic
CGTTAATGTTCAAGTGGCAC+AGG 0.490281 2:+60608040 MsG0280009908.01.T01:CDS
TGCCAGTAATATTTGATGCT+GGG 0.497614 2:+60608859 MsG0280009908.01.T01:CDS
GAAACAATCTCGGCGAAAAG+TGG 0.498858 2:+60606060 MsG0280009908.01.T01:CDS
GGTAAATTGTATAAAATGGA+TGG 0.504469 2:+60610912 MsG0280009908.01.T01:three_prime_UTR
TCTCATCCGACTTACTTCCT+TGG 0.504568 2:+60606138 MsG0280009908.01.T01:CDS
AACTCTGCCACCTAAGCAGT+TGG 0.509248 2:+60607965 MsG0280009908.01.T01:CDS
GAAACAACCTCCAACTGCTT+AGG 0.511706 2:-60607975 None:intergenic
CCATTCCCAGCATGCCGGAT+AGG 0.512773 2:+60610188 MsG0280009908.01.T01:CDS
ACTGTTGAGGGAAATAGAGC+TGG 0.513158 2:+60609330 MsG0280009908.01.T01:CDS
CAGACGTTAGCCGGCGGGAA+AGG 0.513911 2:+60606084 MsG0280009908.01.T01:CDS
GTTGTTATGCTTCAGTCTAG+TGG 0.516229 2:+60607891 MsG0280009908.01.T01:CDS
TGGTCTTTATGTAGATATGA+AGG 0.521189 2:+60609210 MsG0280009908.01.T01:CDS
ATCTCTTCAAAACTTTCAGT+CGG 0.524236 2:-60608972 None:intergenic
GATTTCCTATCCGGCATGCT+GGG 0.528334 2:-60610193 None:intergenic
GGTAATGGTGTGGTGATGAA+AGG 0.529006 2:-60605813 None:intergenic
CTTGTGAAACTTGGTGCCAA+AGG 0.533467 2:+60609876 MsG0280009908.01.T01:CDS
CTCTACATAAATGTCGGCAT+TGG 0.535640 2:-60606013 None:intergenic
TTTCAGTCGGAAGTCCTGTA+AGG 0.536142 2:-60608959 None:intergenic
AAGCAAGTTCTTGTGAAACT+TGG 0.537488 2:+60609867 MsG0280009908.01.T01:CDS
ACTCCACCGGTCGTTGTTGT+CGG 0.538793 2:+60605985 MsG0280009908.01.T01:CDS
AAGGGTTCACCTAATAGTCA+TGG 0.540174 2:+60610864 MsG0280009908.01.T01:three_prime_UTR
TTGTAGATGGGCACTTCTCG+AGG 0.543813 2:+60610800 MsG0280009908.01.T01:three_prime_UTR
GTAATGGTGTGGTGATGAAA+GGG 0.548075 2:-60605812 None:intergenic
GTGGGCAGACGTTAGCCGGC+GGG 0.550446 2:+60606079 MsG0280009908.01.T01:CDS
TGATTTCGTTAATGTTCAAG+TGG 0.552750 2:+60608034 MsG0280009908.01.T01:CDS
ACAACCTCCAACTGCTTAGG+TGG 0.553951 2:-60607972 None:intergenic
CAGGGATTGTTCTGTTGCAG+AGG 0.556827 2:+60608003 MsG0280009908.01.T01:CDS
ACAAAATCCAGTAATTCTTG+TGG 0.556936 2:-60608900 None:intergenic
CCGGTGGAGTCTGTGAGGAT+GGG 0.557693 2:-60605972 None:intergenic
ATCACTGATGCACTTCGAGA+TGG 0.557824 2:+60607813 MsG0280009908.01.T01:CDS
TTGTTTCGCCTTCTTCCGGA+AGG 0.561830 2:-60606044 None:intergenic
GGAAGAAGGCGAAACAATCT+CGG 0.562233 2:+60606050 MsG0280009908.01.T01:CDS
AAAACAAAACTTGTATGAAG+AGG 0.562678 2:+60610771 MsG0280009908.01.T01:three_prime_UTR
GCATGACCAGTTGGAGCAGA+AGG 0.567196 2:-60607867 None:intergenic
TGGAGGTTGTTTCCTCCGCA+GGG 0.567397 2:+60607985 MsG0280009908.01.T01:CDS
TCTGCCACCTAAGCAGTTGG+AGG 0.569384 2:+60607968 MsG0280009908.01.T01:CDS
CTGTTGAGGGAAATAGAGCT+GGG 0.570994 2:+60609331 MsG0280009908.01.T01:CDS
AGTTTGGTTGATTTGTAAGG+TGG 0.572728 2:-60605834 None:intergenic
TGGGCACTTCTCGAGGCTGT+AGG 0.574182 2:+60610807 MsG0280009908.01.T01:three_prime_UTR
CTTGGACTTGCCCTCCACCA+AGG 0.575509 2:-60610012 None:intergenic
AAACAATCTCGGCGAAAAGT+GGG 0.580343 2:+60606061 MsG0280009908.01.T01:CDS
GGGAGCCATTCCCAGCATGC+CGG 0.582454 2:+60610183 MsG0280009908.01.T01:CDS
GCGGATCCGACAACAACGAC+CGG 0.583456 2:-60605991 None:intergenic
AGGGATTGTTCTGTTGCAGA+GGG 0.587419 2:+60608004 MsG0280009908.01.T01:CDS
GTTGCCCTACTTCCCAAACA+AGG 0.590588 2:+60609285 MsG0280009908.01.T01:CDS
GATTTGGAGTGTTGAATCGA+AGG 0.591684 2:-60605903 None:intergenic
GTCATCGATACAACTGGAGC+TGG 0.591914 2:+60609960 MsG0280009908.01.T01:CDS
CTTGAACATTAACGAAATCA+GGG 0.598796 2:-60608031 None:intergenic
TTTCGCCTTCTTCCGGAAGG+CGG 0.599981 2:-60606041 None:intergenic
GTCGATCTCTACATAAATGT+CGG 0.600361 2:-60606019 None:intergenic
GCCAGTAATATTTGATGCTG+GGG 0.602316 2:+60608860 MsG0280009908.01.T01:CDS
CCCATCCTCACAGACTCCAC+CGG 0.603573 2:+60605972 MsG0280009908.01.T01:CDS
CTCGAAGTGCATCAGTGATG+AGG 0.611238 2:-60607809 None:intergenic
GGTGGAGGGCAAGTCCAAGA+AGG 0.612411 2:+60610016 MsG0280009908.01.T01:CDS
TTACAGCGAAACGCAGAACT+GGG 0.622967 2:-60605948 None:intergenic
ATAACAACTGCATGACCAGT+TGG 0.632822 2:-60607876 None:intergenic
TTTGTAAGGTGGTAATGGTG+TGG 0.633183 2:-60605823 None:intergenic
AGATATGAAGGAAATGATCA+TGG 0.633834 2:+60609222 MsG0280009908.01.T01:CDS
ATACAGGCTGCAAAGAATGC+TGG 0.637748 2:+60608834 MsG0280009908.01.T01:intron
CAACAGAACAATCCCTGCGG+AGG 0.637913 2:-60607997 None:intergenic
CAGGTTGGGAACGATGCTCA+CGG 0.639205 2:+60607783 MsG0280009908.01.T01:intron
GATCCGACAACAACGACCGG+TGG 0.642400 2:-60605988 None:intergenic
AACACATACCGGCAAATCTG+AGG 0.647842 2:-60610043 None:intergenic
AGGATTACAATGACTGTGCA+TGG 0.650471 2:+60610721 MsG0280009908.01.T01:three_prime_UTR
ACTGATGCACTTCGAGATGG+TGG 0.651475 2:+60607816 MsG0280009908.01.T01:CDS
ACCTGACCAAGGAAGTAAGT+CGG 0.652089 2:-60606144 None:intergenic
TTGATTAGCACCTTTCCCGC+CGG 0.653337 2:-60606094 None:intergenic
AGTGGGCAGACGTTAGCCGG+CGG 0.657845 2:+60606078 MsG0280009908.01.T01:CDS
TTTGTCATTTCAATAAGACA+AGG 0.663874 2:+60610833 MsG0280009908.01.T01:three_prime_UTR
TTTATCTACCAACCTGACCA+AGG 0.669703 2:-60606155 None:intergenic
AACGACCGGTGGAGTCTGTG+AGG 0.677660 2:-60605977 None:intergenic
AGAAAGAAAGTATATTCCTG+TGG 0.688078 2:+60609175 MsG0280009908.01.T01:CDS
CAGCGAAACGCAGAACTGGG+TGG 0.691330 2:-60605945 None:intergenic
GGTGCTAATCAAGCTTGCTG+TGG 0.692795 2:+60606105 MsG0280009908.01.T01:CDS
TCATGGTGTAGATATTCATG+AGG 0.697786 2:+60609239 MsG0280009908.01.T01:CDS
TGTTGAGGGAAATAGAGCTG+GGG 0.721221 2:+60609332 MsG0280009908.01.T01:CDS
AGTTGGAGCAGAAGGCACAA+CGG 0.725665 2:-60607859 None:intergenic
CCAGTAATATTTGATGCTGG+GGG 0.735674 2:+60608861 MsG0280009908.01.T01:CDS
CTGCAACAGAACAATCCCTG+CGG 0.743915 2:-60608000 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTCAATAGTTTGAAA+AGG - Chr2:60609670-60609689 None:intergenic 15.0%
!!! AATACTTGTATTTTTATACT+AGG + Chr2:60608522-60608541 MsG0280009908.01.T01:intron 15.0%
!!! ATTTTATACAATTTACCTAA+GGG - Chr2:60610909-60610928 None:intergenic 15.0%
!!! GATAAAAGTATAATAACTTT+TGG + Chr2:60610693-60610712 MsG0280009908.01.T01:intron 15.0%
!!! TGATAAACTAGATTTTTTTA+CGG + Chr2:60606775-60606794 MsG0280009908.01.T01:intron 15.0%
!!! TTTTTTTCAATTAAGATTGT+AGG + Chr2:60606489-60606508 MsG0280009908.01.T01:intron 15.0%
!! ACACAACTAATTCAAATTTA+TGG - Chr2:60607182-60607201 None:intergenic 20.0%
!! ATAAATTTATTGAAGTCTAG+TGG + Chr2:60608699-60608718 MsG0280009908.01.T01:intron 20.0%
!! CAATAAATTTATTTGCAACA+CGG - Chr2:60608691-60608710 None:intergenic 20.0%
!! CTAATTAAATTTGTAGTGTT+TGG + Chr2:60606397-60606416 MsG0280009908.01.T01:intron 20.0%
!! CTTAGGTAAATTGTATAAAA+TGG + Chr2:60610908-60610927 MsG0280009908.01.T01:three_prime_UTR 20.0%
!! GTAACTAATCAAAACTAATT+TGG - Chr2:60606225-60606244 None:intergenic 20.0%
!! TAAAAATAACAGTTACCAAA+CGG + Chr2:60606644-60606663 MsG0280009908.01.T01:intron 20.0%
!! TGTATAGCTTAAAAGAATAA+TGG - Chr2:60610631-60610650 None:intergenic 20.0%
!! TTACAAAAATTTCAAATCTC+AGG - Chr2:60608395-60608414 None:intergenic 20.0%
!!! ACTATAATTTAGATTTCTAG+AGG + Chr2:60610358-60610377 MsG0280009908.01.T01:intron 20.0%
!!! AGTTTTGATTAGTTACAATT+TGG + Chr2:60606229-60606248 MsG0280009908.01.T01:intron 20.0%
!!! CAAAAAATTCTGAAATTTCA+GGG + Chr2:60609840-60609859 MsG0280009908.01.T01:intron 20.0%
!!! CATTTTATACAATTTACCTA+AGG - Chr2:60610910-60610929 None:intergenic 20.0%
!!! GATTGATTTTGAAATTGATA+AGG - Chr2:60607710-60607729 None:intergenic 20.0%
!!! TATAATAACTTTTGGTTGTT+AGG + Chr2:60610701-60610720 MsG0280009908.01.T01:three_prime_UTR 20.0%
!!! TCAAAAAATTCTGAAATTTC+AGG + Chr2:60609839-60609858 MsG0280009908.01.T01:intron 20.0%
!!! TGTTTTAATTAAGATAACAG+TGG + Chr2:60606975-60606994 MsG0280009908.01.T01:intron 20.0%
! AAAAATAACAGTTACCAAAC+GGG + Chr2:60606645-60606664 MsG0280009908.01.T01:intron 25.0%
! AAAACAAAACTTGTATGAAG+AGG + Chr2:60610771-60610790 MsG0280009908.01.T01:three_prime_UTR 25.0%
! AAAATCTAACCATGACTATT+AGG - Chr2:60610876-60610895 None:intergenic 25.0%
! AAGACATAAATTTGAGCTTA+TGG - Chr2:60606712-60606731 None:intergenic 25.0%
! AGAAATTTCAAAACCTTGTT+TGG - Chr2:60609301-60609320 None:intergenic 25.0%
! AGGAAAAAATTGATACAATG+AGG - Chr2:60607690-60607709 None:intergenic 25.0%
! AGTTATCATTATGTAGAAGT+TGG + Chr2:60607624-60607643 MsG0280009908.01.T01:intron 25.0%
! ATAAGATAGTGAGAAAATGA+CGG + Chr2:60607459-60607478 MsG0280009908.01.T01:intron 25.0%
! ATATCGCTTATAATCTCATT+TGG - Chr2:60606681-60606700 None:intergenic 25.0%
! ATTATGTAATTCAATCATGC+AGG - Chr2:60610484-60610503 None:intergenic 25.0%
! ATTCAAATTTATGGTCTGTT+TGG - Chr2:60607173-60607192 None:intergenic 25.0%
! CAACAATAACAATAGAATTC+TGG - Chr2:60607917-60607936 None:intergenic 25.0%
! CTGTTTGGTAAACAAAAATA+GGG + Chr2:60606327-60606346 MsG0280009908.01.T01:intron 25.0%
! GGTAAATTGTATAAAATGGA+TGG + Chr2:60610912-60610931 MsG0280009908.01.T01:three_prime_UTR 25.0%
! TAAAATCTCACGTATTAGTT+AGG - Chr2:60610123-60610142 None:intergenic 25.0%
! TACTTTAACTCACCAATTTA+TGG - Chr2:60609019-60609038 None:intergenic 25.0%
! TAGCTTAAAAGAATAATGGT+AGG - Chr2:60610627-60610646 None:intergenic 25.0%
! TATGATTATTATGACTCTGT+TGG + Chr2:60606735-60606754 MsG0280009908.01.T01:intron 25.0%
! TCACAACTAATTCTAATTTG+AGG - Chr2:60607561-60607580 None:intergenic 25.0%
! TCTGTTTGGTAAACAAAAAT+AGG + Chr2:60606326-60606345 MsG0280009908.01.T01:intron 25.0%
! TGTTTGGTAAACAAAAATAG+GGG + Chr2:60606328-60606347 MsG0280009908.01.T01:intron 25.0%
!! AATATTTTCTACTGTGAAAC+CGG + Chr2:60608564-60608583 MsG0280009908.01.T01:intron 25.0%
!! AATTCTATTGTTATTGTTGG+TGG + Chr2:60607918-60607937 MsG0280009908.01.T01:CDS 25.0%
!! ACTTATAGTGTGATTAGTTA+TGG + Chr2:60606267-60606286 MsG0280009908.01.T01:intron 25.0%
!! AGTTATGATTAGTTAGAAGT+TGG + Chr2:60607255-60607274 MsG0280009908.01.T01:intron 25.0%
!! CAGAATTCTATTGTTATTGT+TGG + Chr2:60607915-60607934 MsG0280009908.01.T01:CDS 25.0%
!! GAAATTTCAAAACCTTGTTT+GGG - Chr2:60609300-60609319 None:intergenic 25.0%
!! GTTCAAATTAGATTCAAGTT+TGG - Chr2:60608373-60608392 None:intergenic 25.0%
!! TAACTAGCCAAAATGTATTT+TGG + Chr2:60608803-60608822 MsG0280009908.01.T01:intron 25.0%
!! TTTGTCATTTCAATAAGACA+AGG + Chr2:60610833-60610852 MsG0280009908.01.T01:three_prime_UTR 25.0%
!!! AGTTATGATTAGTTTGAAGA+TGG + Chr2:60607204-60607223 MsG0280009908.01.T01:intron 25.0%
!!! ATAAGACAAGGTTAGTTTAA+AGG + Chr2:60610845-60610864 MsG0280009908.01.T01:three_prime_UTR 25.0%
!!! TAAGACAAGGTTAGTTTAAA+GGG + Chr2:60610846-60610865 MsG0280009908.01.T01:three_prime_UTR 25.0%
!!! TTGTTTTCTGTCATTTACAA+GGG - Chr2:60610758-60610777 None:intergenic 25.0%
!!! TTTGTTTTCTGTCATTTACA+AGG - Chr2:60610759-60610778 None:intergenic 25.0%
AACTTCTCAATCATCATTGA+AGG + Chr2:60610224-60610243 MsG0280009908.01.T01:CDS 30.0%
AAGAGACAATGTAAAATCGA+TGG - Chr2:60609718-60609737 None:intergenic 30.0%
AATGGCCTCTTCTTATAAAA+AGG - Chr2:60608632-60608651 None:intergenic 30.0%
ACAAAATCCAGTAATTCTTG+TGG - Chr2:60608903-60608922 None:intergenic 30.0%
ACTTGAACATTAACGAAATC+AGG - Chr2:60608035-60608054 None:intergenic 30.0%
AGATATGAAGGAAATGATCA+TGG + Chr2:60609222-60609241 MsG0280009908.01.T01:CDS 30.0%
AGTTGTGATTAATTAGCAGT+TGG + Chr2:60607573-60607592 MsG0280009908.01.T01:intron 30.0%
ATCTCTTCAAAACTTTCAGT+CGG - Chr2:60608975-60608994 None:intergenic 30.0%
CAATTCTCTTCAAATACACA+CGG - Chr2:60608177-60608196 None:intergenic 30.0%
CTGTATAGCTTAAAGTATGT+AGG - Chr2:60607026-60607045 None:intergenic 30.0%
CTTGAACATTAACGAAATCA+GGG - Chr2:60608034-60608053 None:intergenic 30.0%
TGATTCTTTACACTTGATTC+TGG + Chr2:60610572-60610591 MsG0280009908.01.T01:intron 30.0%
TGATTTCGTTAATGTTCAAG+TGG + Chr2:60608034-60608053 MsG0280009908.01.T01:CDS 30.0%
TGGTCTTTATGTAGATATGA+AGG + Chr2:60609210-60609229 MsG0280009908.01.T01:CDS 30.0%
TTCTTCTCCTTCTATGAAAA+GGG - Chr2:60609907-60609926 None:intergenic 30.0%
TTGTATAAAATGGATGGTTC+AGG + Chr2:60610918-60610937 MsG0280009908.01.T01:three_prime_UTR 30.0%
! AAGGAATTGGATTGGATTAA+TGG - Chr2:60605887-60605906 None:intergenic 30.0%
! ACATTTTCTCACAAGCTTAT+AGG - Chr2:60607095-60607114 None:intergenic 30.0%
! AGAAAGAAAGTATATTCCTG+TGG + Chr2:60609175-60609194 MsG0280009908.01.T01:CDS 30.0%
! AGGAATTGGATTGGATTAAT+GGG - Chr2:60605886-60605905 None:intergenic 30.0%
! AGTCATGGTTAGATTTTGAA+AGG + Chr2:60610879-60610898 MsG0280009908.01.T01:three_prime_UTR 30.0%
! AGTTATGGTTAGTTAGAAGT+TGG + Chr2:60606282-60606301 MsG0280009908.01.T01:intron 30.0%
! CAAATTAGATTCAAGTTTGG+AGG - Chr2:60608370-60608389 None:intergenic 30.0%
! CACCATACCAAAATACATTT+TGG - Chr2:60608813-60608832 None:intergenic 30.0%
! GTAGACCTTTTTATAAGAAG+AGG + Chr2:60608624-60608643 MsG0280009908.01.T01:intron 30.0%
! TCTCTATGTGTTCAAGTTAA+GGG + Chr2:60610163-60610182 MsG0280009908.01.T01:CDS 30.0%
! TGGAATCAAACTTTTGCAAA+TGG - Chr2:60609588-60609607 None:intergenic 30.0%
! TGTAGGACACTATTTTCAAA+TGG - Chr2:60608650-60608669 None:intergenic 30.0%
! TTCTCTATGTGTTCAAGTTA+AGG + Chr2:60610162-60610181 MsG0280009908.01.T01:CDS 30.0%
!! AATTTGCTAATAGTACAACC+TGG + Chr2:60609478-60609497 MsG0280009908.01.T01:intron 30.0%
!! TATTTTGCTGTGTATCTTCT+TGG + Chr2:60610074-60610093 MsG0280009908.01.T01:intron 30.0%
!! TTGAGTTTGGTTGATTTGTA+AGG - Chr2:60605840-60605859 None:intergenic 30.0%
!!! AAGAGGCTTTTTTTGTAGAT+GGG + Chr2:60610788-60610807 MsG0280009908.01.T01:three_prime_UTR 30.0%
!!! AAGTTTTGAAGAGATTAGAC+AGG + Chr2:60608980-60608999 MsG0280009908.01.T01:CDS 30.0%
!!! AGCCAAAATGTATTTTGGTA+TGG + Chr2:60608808-60608827 MsG0280009908.01.T01:intron 30.0%
!!! ATGTTTGGTTTCACTTTTTG+AGG + Chr2:60608284-60608303 MsG0280009908.01.T01:intron 30.0%
!!! GATGACTGTTTTAGCAAAAA+TGG - Chr2:60609946-60609965 None:intergenic 30.0%
AAAACAGTCATCGATACAAC+TGG + Chr2:60609954-60609973 MsG0280009908.01.T01:CDS 35.0%
AAATAGAGCTGGGGTAAAAT+AGG + Chr2:60609341-60609360 MsG0280009908.01.T01:intron 35.0%
AAGCAAGTTCTTGTGAAACT+TGG + Chr2:60609867-60609886 MsG0280009908.01.T01:CDS 35.0%
AATAGAGCTGGGGTAAAATA+GGG + Chr2:60609342-60609361 MsG0280009908.01.T01:intron 35.0%
AATGCACGTGTTAATTGTAC+AGG - Chr2:60610544-60610563 None:intergenic 35.0%
ACCATAAGGTGAAATTATGG+AGG + Chr2:60609423-60609442 MsG0280009908.01.T01:intron 35.0%
ACCATTTCTTTCTTATCCAC+AGG - Chr2:60609194-60609213 None:intergenic 35.0%
ACCTATTCCACAAGAATTAC+TGG + Chr2:60608893-60608912 MsG0280009908.01.T01:CDS 35.0%
ACGTTAGATAAGTGCATGTT+TGG + Chr2:60608269-60608288 MsG0280009908.01.T01:intron 35.0%
AGTTGTACTTTGTCTCTGTT+TGG + Chr2:60606312-60606331 MsG0280009908.01.T01:intron 35.0%
ATACATTCTGCAACACATAC+CGG - Chr2:60610057-60610076 None:intergenic 35.0%
ATAGTACAACCTGGTACTAT+AGG + Chr2:60609487-60609506 MsG0280009908.01.T01:intron 35.0%
ATCCAATTACATGCACCATA+AGG + Chr2:60609409-60609428 MsG0280009908.01.T01:intron 35.0%
ATTGACATGCATGCATATGT+GGG + Chr2:60609142-60609161 MsG0280009908.01.T01:intron 35.0%
CATGTCAATGAATATGGCAA+TGG - Chr2:60609131-60609150 None:intergenic 35.0%
CTGAGACTCTTGTAATATCA+CGG - Chr2:60609793-60609812 None:intergenic 35.0%
GAATTGCAATGTGATCTGTA+AGG - Chr2:60609045-60609064 None:intergenic 35.0%
GCAGTGTTTAGTAAAATCAG+TGG + Chr2:60607312-60607331 MsG0280009908.01.T01:intron 35.0%
GCATTCATTTACTTACAGTC+AGG - Chr2:60610444-60610463 None:intergenic 35.0%
GGTGAAATTATGGAGGAAAA+AGG + Chr2:60609430-60609449 MsG0280009908.01.T01:intron 35.0%
GGTGCATGTAATTGGATTTA+AGG - Chr2:60609406-60609425 None:intergenic 35.0%
GTCGATCTCTACATAAATGT+CGG - Chr2:60606022-60606041 None:intergenic 35.0%
GTTCTTCTCCTTCTATGAAA+AGG - Chr2:60609908-60609927 None:intergenic 35.0%
TATATGCTATGCACTTCGTA+CGG + Chr2:60608729-60608748 MsG0280009908.01.T01:intron 35.0%
TCATGGTGTAGATATTCATG+AGG + Chr2:60609239-60609258 MsG0280009908.01.T01:CDS 35.0%
TCCAGTAATTCTTGTGGAAT+AGG - Chr2:60608897-60608916 None:intergenic 35.0%
TCCTCCATAATTTCACCTTA+TGG - Chr2:60609427-60609446 None:intergenic 35.0%
TCCTGTGGATAAGAAAGAAA+TGG + Chr2:60609190-60609209 MsG0280009908.01.T01:CDS 35.0%
TGACAAGCACATTAAGCTAT+AGG - Chr2:60607532-60607551 None:intergenic 35.0%
TGATATTACAAGAGTCTCAG+TGG + Chr2:60609793-60609812 MsG0280009908.01.T01:intron 35.0%
TGCACCATAAGGTGAAATTA+TGG + Chr2:60609420-60609439 MsG0280009908.01.T01:intron 35.0%
TGCATGCATGTCAATGAATA+TGG - Chr2:60609137-60609156 None:intergenic 35.0%
TGCCAGTAATATTTGATGCT+GGG + Chr2:60608859-60608878 MsG0280009908.01.T01:CDS 35.0%
TGCTGCAAAATGCCATAAAT+TGG + Chr2:60609004-60609023 MsG0280009908.01.T01:CDS 35.0%
TGTCTACAATAGATCCAGAA+TGG - Chr2:60609555-60609574 None:intergenic 35.0%
TTGAATCGAAGGAATTGGAT+TGG - Chr2:60605895-60605914 None:intergenic 35.0%
! AAAACCTTGTTTGGGAAGTA+GGG - Chr2:60609292-60609311 None:intergenic 35.0%
! ACTTTTGCAAATGGAAGACA+AGG - Chr2:60609579-60609598 None:intergenic 35.0%
! CATGAATTCATGACTTGTGT+AGG - Chr2:60608667-60608686 None:intergenic 35.0%
! CGATTTTACATTGTCTCTTC+AGG + Chr2:60609719-60609738 MsG0280009908.01.T01:intron 35.0%
! TCATTGAAGGTACATGCAAA+AGG + Chr2:60610237-60610256 MsG0280009908.01.T01:intron 35.0%
! TTGGCTAGTTAAGAATCTTG+CGG - Chr2:60608794-60608813 None:intergenic 35.0%
!! AAGGGTTGTTTGGTTCATTT+TGG - Chr2:60605797-60605816 None:intergenic 35.0%
!! AGCTTACTGCATTTTTCGAT+AGG - Chr2:60607061-60607080 None:intergenic 35.0%
!! AGGAGTTTTAGTGCAATAGT+TGG - Chr2:60609650-60609669 None:intergenic 35.0%
!! AGTTTGGTTGATTTGTAAGG+TGG - Chr2:60605837-60605856 None:intergenic 35.0%
!! CTGTTGTGTTTGAGTTTTCT+CGG + Chr2:60608329-60608348 MsG0280009908.01.T01:intron 35.0%
!! GTGATGAAAGTGTTTGAGTT+TGG - Chr2:60605853-60605872 None:intergenic 35.0%
!! GTTGATTTGTAAGGTGGTAA+TGG - Chr2:60605831-60605850 None:intergenic 35.0%
!! TGTTGTGTTTGAGTTTTCTC+GGG + Chr2:60608330-60608349 MsG0280009908.01.T01:intron 35.0%
!! TTGGATTGGATTAATGGGTT+TGG - Chr2:60605881-60605900 None:intergenic 35.0%
!!! ACTGTTTTAGCAAAAATGGC+AGG - Chr2:60609942-60609961 None:intergenic 35.0%
!!! GAAGAGGCTTTTTTTGTAGA+TGG + Chr2:60610787-60610806 MsG0280009908.01.T01:three_prime_UTR 35.0%
!!! TATTTTGGTATGGTGCATAC+AGG + Chr2:60608818-60608837 MsG0280009908.01.T01:intron 35.0%
!!! TCTTTTGTGTTGACTGTTGA+GGG + Chr2:60609318-60609337 MsG0280009908.01.T01:CDS 35.0%
!!! TTCTTTTGTGTTGACTGTTG+AGG + Chr2:60609317-60609336 MsG0280009908.01.T01:CDS 35.0%
!!! TTTGGTTTCACTTTTTGAGG+AGG + Chr2:60608287-60608306 MsG0280009908.01.T01:intron 35.0%
AAAATGGCAGGTTGCTGAAT+TGG - Chr2:60609930-60609949 None:intergenic 40.0%
AAACAATCTCGGCGAAAAGT+GGG + Chr2:60606061-60606080 MsG0280009908.01.T01:CDS 40.0%
AAGGGTTCACCTAATAGTCA+TGG + Chr2:60610864-60610883 MsG0280009908.01.T01:three_prime_UTR 40.0%
ACATCAATCTACAAGCCTTC+AGG - Chr2:60609759-60609778 None:intergenic 40.0%
AGGATTACAATGACTGTGCA+TGG + Chr2:60610721-60610740 MsG0280009908.01.T01:three_prime_UTR 40.0%
AGTCCCAATGAAAGTGAACT+TGG + Chr2:60608933-60608952 MsG0280009908.01.T01:CDS 40.0%
ATAACAACTGCATGACCAGT+TGG - Chr2:60607879-60607898 None:intergenic 40.0%
CACCTTATGGTGCATGTAAT+TGG - Chr2:60609414-60609433 None:intergenic 40.0%
CAGTCTCATGCATACTACAA+TGG - Chr2:60608489-60608508 None:intergenic 40.0%
CATCAATCTACAAGCCTTCA+GGG - Chr2:60609758-60609777 None:intergenic 40.0%
CATTGACATGCATGCATATG+TGG + Chr2:60609141-60609160 MsG0280009908.01.T01:intron 40.0%
CCAGTAATATTTGATGCTGG+GGG + Chr2:60608861-60608880 MsG0280009908.01.T01:CDS 40.0%
CGACCAAGTTCACTTTCATT+GGG - Chr2:60608939-60608958 None:intergenic 40.0%
CTAGTTAAGAATCTTGCGGA+TGG - Chr2:60608790-60608809 None:intergenic 40.0%
CTCTACATAAATGTCGGCAT+TGG - Chr2:60606016-60606035 None:intergenic 40.0%
GCCAGTAATATTTGATGCTG+GGG + Chr2:60608860-60608879 MsG0280009908.01.T01:CDS 40.0%
GCGGTTGAGTTTGTAGTATT+TGG + Chr2:60606887-60606906 MsG0280009908.01.T01:intron 40.0%
GTAGTGTCTGGTGAAATTAG+CGG + Chr2:60606868-60606887 MsG0280009908.01.T01:intron 40.0%
GTGCCAGTAATATTTGATGC+TGG + Chr2:60608858-60608877 MsG0280009908.01.T01:CDS 40.0%
GTTGTTATGCTTCAGTCTAG+TGG + Chr2:60607891-60607910 MsG0280009908.01.T01:CDS 40.0%
TATGAAAAGGGCAGATCCTT+TGG - Chr2:60609895-60609914 None:intergenic 40.0%
TATGATTCTCAACGCAGGTT+GGG + Chr2:60607769-60607788 MsG0280009908.01.T01:intron 40.0%
TCGAGAACAGATTTCCTATC+CGG - Chr2:60610205-60610224 None:intergenic 40.0%
TCGGTTGAATTTGTAGTGTC+TGG + Chr2:60606856-60606875 MsG0280009908.01.T01:intron 40.0%
TCTACTATGATTCTCAACGC+AGG + Chr2:60607764-60607783 MsG0280009908.01.T01:intron 40.0%
TGTAACCTCCAATCACATGA+CGG + Chr2:60609619-60609638 MsG0280009908.01.T01:intron 40.0%
TTGGTTAACAAAGACCCGTT+TGG - Chr2:60606662-60606681 None:intergenic 40.0%
TTTATCTACCAACCTGACCA+AGG - Chr2:60606158-60606177 None:intergenic 40.0%
! AAATCTGAGGCATTCCTTCT+TGG - Chr2:60610033-60610052 None:intergenic 40.0%
! CAAAACCTTGTTTGGGAAGT+AGG - Chr2:60609293-60609312 None:intergenic 40.0%
! GCACATTTTTCCACAGAGAA+AGG - Chr2:60610101-60610120 None:intergenic 40.0%
! GCTCTACGCTTTAAGCTATA+AGG + Chr2:60607397-60607416 MsG0280009908.01.T01:intron 40.0%
! GTAATGGTGTGGTGATGAAA+GGG - Chr2:60605815-60605834 None:intergenic 40.0%
! GTTGATGAGTTAACTGACAG+TGG + Chr2:60606824-60606843 MsG0280009908.01.T01:intron 40.0%
! TACATAAATGTCGGCATTGG+CGG - Chr2:60606013-60606032 None:intergenic 40.0%
! TAGATTCAAGTTTGGAGGCA+AGG - Chr2:60608365-60608384 None:intergenic 40.0%
!! ATTTTGAAAGGTCGACCCTT+AGG + Chr2:60610891-60610910 MsG0280009908.01.T01:three_prime_UTR 40.0%
!! GAGTGTTGAATCGAAGGAAT+TGG - Chr2:60605900-60605919 None:intergenic 40.0%
!! GATTTGGAGTGTTGAATCGA+AGG - Chr2:60605906-60605925 None:intergenic 40.0%
!! GGATGGTTCAGGTTTGATTT+TGG + Chr2:60610929-60610948 MsG0280009908.01.T01:three_prime_UTR 40.0%
!! TCTCACTGCTTGCTTTTCTT+TGG + Chr2:60609263-60609282 MsG0280009908.01.T01:CDS 40.0%
!! TTTGTAAGGTGGTAATGGTG+TGG - Chr2:60605826-60605845 None:intergenic 40.0%
!!! GGTGGTTTTGTTTGTCGTTT+TGG - Chr2:60605930-60605949 None:intergenic 40.0%
!!! TGCAATAGCCACTTTTGATC+TGG + Chr2:60608149-60608168 MsG0280009908.01.T01:intron 40.0%
!!! TGTTTGTCGTTTTGGCGATT+TGG - Chr2:60605922-60605941 None:intergenic 40.0%
AACACATACCGGCAAATCTG+AGG - Chr2:60610046-60610065 None:intergenic 45.0%
AAGGAATGCCTCAGATTTGC+CGG + Chr2:60610035-60610054 MsG0280009908.01.T01:CDS 45.0%
AATGTTCAAGTGGCACAGGT+TGG + Chr2:60608044-60608063 MsG0280009908.01.T01:intron 45.0%
ACACGGTTCCAGATCAAAAG+TGG - Chr2:60608160-60608179 None:intergenic 45.0%
ACCTGACCAAGGAAGTAAGT+CGG - Chr2:60606147-60606166 None:intergenic 45.0%
ACTGTTGAGGGAAATAGAGC+TGG + Chr2:60609330-60609349 MsG0280009908.01.T01:CDS 45.0%
ACTTACTTCCTTGGTCAGGT+TGG + Chr2:60606147-60606166 MsG0280009908.01.T01:intron 45.0%
AGGGATTGTTCTGTTGCAGA+GGG + Chr2:60608004-60608023 MsG0280009908.01.T01:CDS 45.0%
AGTCTCAGTGGTTACTTCTC+TGG + Chr2:60609805-60609824 MsG0280009908.01.T01:intron 45.0%
AGTTACCGTCATGTGATTGG+AGG - Chr2:60609627-60609646 None:intergenic 45.0%
AGTTAGTTGGAGAAGCAGAC+TGG + Chr2:60608591-60608610 MsG0280009908.01.T01:intron 45.0%
ATACAGGCTGCAAAGAATGC+TGG + Chr2:60608834-60608853 MsG0280009908.01.T01:intron 45.0%
ATCACTGATGCACTTCGAGA+TGG + Chr2:60607813-60607832 MsG0280009908.01.T01:CDS 45.0%
ATCCGCTATAAGCGAGCTAT+CGG - Chr2:60606803-60606822 None:intergenic 45.0%
CCCCCAGCATCAAATATTAC+TGG - Chr2:60608864-60608883 None:intergenic 45.0%
CGTTAATGTTCAAGTGGCAC+AGG + Chr2:60608040-60608059 MsG0280009908.01.T01:CDS 45.0%
CTATGATTCTCAACGCAGGT+TGG + Chr2:60607768-60607787 MsG0280009908.01.T01:intron 45.0%
CTGACAGTGGATAAGCTAGT+CGG + Chr2:60606837-60606856 MsG0280009908.01.T01:intron 45.0%
CTGTTGAGGGAAATAGAGCT+GGG + Chr2:60609331-60609350 MsG0280009908.01.T01:CDS 45.0%
CTTCTCCAACTAACTGTGTC+CGG - Chr2:60608586-60608605 None:intergenic 45.0%
GAAACAACCTCCAACTGCTT+AGG - Chr2:60607978-60607997 None:intergenic 45.0%
GAAACAATCTCGGCGAAAAG+TGG + Chr2:60606060-60606079 MsG0280009908.01.T01:CDS 45.0%
GAGATTGTTTCGCCTTCTTC+CGG - Chr2:60606051-60606070 None:intergenic 45.0%
GCGACCAAGTTCACTTTCAT+TGG - Chr2:60608940-60608959 None:intergenic 45.0%
GGAAGAAGGCGAAACAATCT+CGG + Chr2:60606050-60606069 MsG0280009908.01.T01:CDS 45.0%
GTCATGTGATTGGAGGTTAC+AGG - Chr2:60609620-60609639 None:intergenic 45.0%
GTTAGTTGGAGAAGCAGACT+GGG + Chr2:60608592-60608611 MsG0280009908.01.T01:intron 45.0%
TCTCATCCGACTTACTTCCT+TGG + Chr2:60606138-60606157 MsG0280009908.01.T01:CDS 45.0%
TCTTCTTGGACCTTTCTCTG+TGG + Chr2:60610088-60610107 MsG0280009908.01.T01:intron 45.0%
TGAAACCGGACACAGTTAGT+TGG + Chr2:60608578-60608597 MsG0280009908.01.T01:intron 45.0%
TGGAGTTACCGTCATGTGAT+TGG - Chr2:60609630-60609649 None:intergenic 45.0%
TGGGGTAAAATAGGGAGAGA+AGG + Chr2:60609350-60609369 MsG0280009908.01.T01:intron 45.0%
TGTTGAGGGAAATAGAGCTG+GGG + Chr2:60609332-60609351 MsG0280009908.01.T01:CDS 45.0%
TTACAGCGAAACGCAGAACT+GGG - Chr2:60605951-60605970 None:intergenic 45.0%
TTTACAGCGAAACGCAGAAC+TGG - Chr2:60605952-60605971 None:intergenic 45.0%
TTTCAGTCGGAAGTCCTGTA+AGG - Chr2:60608962-60608981 None:intergenic 45.0%
! GGATCTGCCCTTTTCATAGA+AGG + Chr2:60609897-60609916 MsG0280009908.01.T01:CDS 45.0%
! GGTAATGGTGTGGTGATGAA+AGG - Chr2:60605816-60605835 None:intergenic 45.0%
! GTGGTGATGAAAGGGTTGTT+TGG - Chr2:60605807-60605826 None:intergenic 45.0%
! GTGGTGCTAATGTGAGTTGT+TGG + Chr2:60607937-60607956 MsG0280009908.01.T01:CDS 45.0%
!! CTTGTGAAACTTGGTGCCAA+AGG + Chr2:60609876-60609895 MsG0280009908.01.T01:CDS 45.0%
!! GAGGTTACAGGTTTGAGTTG+TGG - Chr2:60609608-60609627 None:intergenic 45.0%
!! GTGTCTTGTTTGATCCCTGA+AGG + Chr2:60609741-60609760 MsG0280009908.01.T01:intron 45.0%
!!! TTTCACTGCTGCTTTTGCTG+TGG + Chr2:60609989-60610008 MsG0280009908.01.T01:CDS 45.0%
AAAAGTGGGCAGACGTTAGC+CGG + Chr2:60606075-60606094 MsG0280009908.01.T01:CDS 50.0%
AACTCTGCCACCTAAGCAGT+TGG + Chr2:60607965-60607984 MsG0280009908.01.T01:CDS 50.0%
ACAACCTCCAACTGCTTAGG+TGG - Chr2:60607975-60607994 None:intergenic 50.0%
ACTGATGCACTTCGAGATGG+TGG + Chr2:60607816-60607835 MsG0280009908.01.T01:CDS 50.0%
AGATCCTGATTCCAGACACC+AGG - Chr2:60610389-60610408 None:intergenic 50.0%
AGATTTCCTATCCGGCATGC+TGG - Chr2:60610197-60610216 None:intergenic 50.0%
AGTGAACTTGGTCGCCTTAC+AGG + Chr2:60608945-60608964 MsG0280009908.01.T01:CDS 50.0%
CACCGATAGCTCGCTTATAG+CGG + Chr2:60606798-60606817 MsG0280009908.01.T01:intron 50.0%
CAGGGATTGTTCTGTTGCAG+AGG + Chr2:60608003-60608022 MsG0280009908.01.T01:CDS 50.0%
CTCGAAGTGCATCAGTGATG+AGG - Chr2:60607812-60607831 None:intergenic 50.0%
CTGCAACAGAACAATCCCTG+CGG - Chr2:60608003-60608022 None:intergenic 50.0%
GATTTCCTATCCGGCATGCT+GGG - Chr2:60610196-60610215 None:intergenic 50.0%
GGTTGGACTTGGATCCATTC+TGG + Chr2:60609538-60609557 MsG0280009908.01.T01:intron 50.0%
GTCATCGATACAACTGGAGC+TGG + Chr2:60609960-60609979 MsG0280009908.01.T01:CDS 50.0%
GTTGCCCTACTTCCCAAACA+AGG + Chr2:60609285-60609304 MsG0280009908.01.T01:CDS 50.0%
TCCGACTTACTTCCTTGGTC+AGG + Chr2:60606143-60606162 MsG0280009908.01.T01:CDS 50.0%
TGCTTAGGTGGCAGAGTTTG+AGG - Chr2:60607963-60607982 None:intergenic 50.0%
TTGATTAGCACCTTTCCCGC+CGG - Chr2:60606097-60606116 None:intergenic 50.0%
TTGTAGATGGGCACTTCTCG+AGG + Chr2:60610800-60610819 MsG0280009908.01.T01:three_prime_UTR 50.0%
TTGTTTCGCCTTCTTCCGGA+AGG - Chr2:60606047-60606066 None:intergenic 50.0%
! AGATTTCTAGAGGACGAGCC+TGG + Chr2:60610368-60610387 MsG0280009908.01.T01:intron 50.0%
! AGTTGGAGCAGAAGGCACAA+CGG - Chr2:60607862-60607881 None:intergenic 50.0%
! CACTTCGAGATGGTGGTGTT+CGG + Chr2:60607823-60607842 MsG0280009908.01.T01:CDS 50.0%
!! GGTGCTAATCAAGCTTGCTG+TGG + Chr2:60606105-60606124 MsG0280009908.01.T01:CDS 50.0%
ACTCCACCGGTCGTTGTTGT+CGG + Chr2:60605985-60606004 MsG0280009908.01.T01:CDS 55.0%
AGAAGCTGCAGCAGCTGTTG+TGG - Chr2:60610146-60610165 None:intergenic 55.0%
CAACAGAACAATCCCTGCGG+AGG - Chr2:60608000-60608019 None:intergenic 55.0%
GCATGACCAGTTGGAGCAGA+AGG - Chr2:60607870-60607889 None:intergenic 55.0%
GTTGTGCCTTCTGCTCCAAC+TGG + Chr2:60607861-60607880 MsG0280009908.01.T01:CDS 55.0%
TCTGCCACCTAAGCAGTTGG+AGG + Chr2:60607968-60607987 MsG0280009908.01.T01:CDS 55.0%
TGTAGAGATCGACCGCCTTC+CGG + Chr2:60606029-60606048 MsG0280009908.01.T01:CDS 55.0%
TTTCGCCTTCTTCCGGAAGG+CGG - Chr2:60606044-60606063 None:intergenic 55.0%
! CAGGTTGGGAACGATGCTCA+CGG + Chr2:60607783-60607802 MsG0280009908.01.T01:intron 55.0%
! TGGAGGTTGTTTCCTCCGCA+GGG + Chr2:60607985-60608004 MsG0280009908.01.T01:CDS 55.0%
! TTGGAGGTTGTTTCCTCCGC+AGG + Chr2:60607984-60608003 MsG0280009908.01.T01:CDS 55.0%
! TTTGCTGTGGCCTTGGTGGA+GGG + Chr2:60610002-60610021 MsG0280009908.01.T01:CDS 55.0%
!! TGCTTTTGCTGTGGCCTTGG+TGG + Chr2:60609998-60610017 MsG0280009908.01.T01:CDS 55.0%
!! TTTTGCTGTGGCCTTGGTGG+AGG + Chr2:60610001-60610020 MsG0280009908.01.T01:CDS 55.0%
!!! TGCTGCTTTTGCTGTGGCCT+TGG + Chr2:60609995-60610014 MsG0280009908.01.T01:CDS 55.0%
AACGACCGGTGGAGTCTGTG+AGG - Chr2:60605980-60605999 None:intergenic 60.0%
ACCGGTGGAGTCTGTGAGGA+TGG - Chr2:60605976-60605995 None:intergenic 60.0%
ATCGACCGCCTTCCGGAAGA+AGG + Chr2:60606036-60606055 MsG0280009908.01.T01:CDS 60.0%
CAGCGAAACGCAGAACTGGG+TGG - Chr2:60605948-60605967 None:intergenic 60.0%
CCATTCCCAGCATGCCGGAT+AGG + Chr2:60610188-60610207 MsG0280009908.01.T01:CDS 60.0%
CCCATCCTCACAGACTCCAC+CGG + Chr2:60605972-60605991 MsG0280009908.01.T01:CDS 60.0%
CCGGTGGAGTCTGTGAGGAT+GGG - Chr2:60605975-60605994 None:intergenic 60.0%
CCTATCCGGCATGCTGGGAA+TGG - Chr2:60610191-60610210 None:intergenic 60.0%
CTTGGACTTGCCCTCCACCA+AGG - Chr2:60610015-60610034 None:intergenic 60.0%
GATCCGACAACAACGACCGG+TGG - Chr2:60605991-60606010 None:intergenic 60.0%
GCGGATCCGACAACAACGAC+CGG - Chr2:60605994-60606013 None:intergenic 60.0%
GGTGGAGGGCAAGTCCAAGA+AGG + Chr2:60610016-60610035 MsG0280009908.01.T01:CDS 60.0%
GTACTATAGGCCCCCTGCCA+TGG + Chr2:60609500-60609519 MsG0280009908.01.T01:intron 60.0%
GTTCAGGGGAGGGTTGGACT+TGG + Chr2:60609527-60609546 MsG0280009908.01.T01:intron 60.0%
TAGAGGACGAGCCTGGTGTC+TGG + Chr2:60610375-60610394 MsG0280009908.01.T01:intron 60.0%
TGGGCACTTCTCGAGGCTGT+AGG + Chr2:60610807-60610826 MsG0280009908.01.T01:three_prime_UTR 60.0%
! CGAGCCTGGTGTCTGGAATC+AGG + Chr2:60610382-60610401 MsG0280009908.01.T01:intron 60.0%
AGTGGGCAGACGTTAGCCGG+CGG + Chr2:60606078-60606097 MsG0280009908.01.T01:CDS 65.0%
ATAGGCCCCCTGCCATGGTG+CGG + Chr2:60609505-60609524 MsG0280009908.01.T01:intron 65.0%
CAGACGTTAGCCGGCGGGAA+AGG + Chr2:60606084-60606103 MsG0280009908.01.T01:CDS 65.0%
CCATGGTGCGGTTCAGGGGA+GGG + Chr2:60609517-60609536 MsG0280009908.01.T01:intron 65.0%
CCCTGAACCGCACCATGGCA+GGG - Chr2:60609515-60609534 None:intergenic 65.0%
CCCTGCCATGGTGCGGTTCA+GGG + Chr2:60609512-60609531 MsG0280009908.01.T01:intron 65.0%
CCTGAACCGCACCATGGCAG+GGG - Chr2:60609514-60609533 None:intergenic 65.0%
CCTGCCATGGTGCGGTTCAG+GGG + Chr2:60609513-60609532 MsG0280009908.01.T01:intron 65.0%
CTGAACCGCACCATGGCAGG+GGG - Chr2:60609513-60609532 None:intergenic 65.0%
GGCAGGGGGCCTATAGTACC+AGG - Chr2:60609499-60609518 None:intergenic 65.0%
GGGAGCCATTCCCAGCATGC+CGG + Chr2:60610183-60610202 MsG0280009908.01.T01:CDS 65.0%
CCCCTGAACCGCACCATGGC+AGG - Chr2:60609516-60609535 None:intergenic 70.0%
CCCCTGCCATGGTGCGGTTC+AGG + Chr2:60609511-60609530 MsG0280009908.01.T01:intron 70.0%
CCCTCCCCTGAACCGCACCA+TGG - Chr2:60609520-60609539 None:intergenic 70.0%
GCCATGGTGCGGTTCAGGGG+AGG + Chr2:60609516-60609535 MsG0280009908.01.T01:intron 70.0%
GGTGCGGTTCAGGGGAGGGT+TGG + Chr2:60609521-60609540 MsG0280009908.01.T01:intron 70.0%
GTGGGCAGACGTTAGCCGGC+GGG + Chr2:60606079-60606098 MsG0280009908.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 60605789 60611000 60605789 ID=MsG0280009908.01;Name=MsG0280009908.01
Chr2 mRNA 60605789 60611000 60605789 ID=MsG0280009908.01.T01;Parent=MsG0280009908.01;Name=MsG0280009908.01.T01;_AED=0.37;_eAED=0.45;_QI=10|0.66|0.85|1|0.83|0.71|7|305|432
Chr2 exon 60605789 60606164 60605789 ID=MsG0280009908.01.T01:exon:34359;Parent=MsG0280009908.01.T01
Chr2 exon 60607786 60608061 60607786 ID=MsG0280009908.01.T01:exon:34360;Parent=MsG0280009908.01.T01
Chr2 exon 60608840 60609025 60608840 ID=MsG0280009908.01.T01:exon:34361;Parent=MsG0280009908.01.T01
Chr2 exon 60609171 60609353 60609171 ID=MsG0280009908.01.T01:exon:34362;Parent=MsG0280009908.01.T01
Chr2 exon 60609861 60610056 60609861 ID=MsG0280009908.01.T01:exon:34363;Parent=MsG0280009908.01.T01
Chr2 exon 60610152 60610245 60610152 ID=MsG0280009908.01.T01:exon:34364;Parent=MsG0280009908.01.T01
Chr2 exon 60610698 60611000 60610698 ID=MsG0280009908.01.T01:exon:34365;Parent=MsG0280009908.01.T01
Chr2 five_prime_UTR 60605789 60605798 60605789 ID=MsG0280009908.01.T01:five_prime_utr;Parent=MsG0280009908.01.T01
Chr2 CDS 60605799 60606164 60605799 ID=MsG0280009908.01.T01:cds;Parent=MsG0280009908.01.T01
Chr2 CDS 60607786 60608061 60607786 ID=MsG0280009908.01.T01:cds;Parent=MsG0280009908.01.T01
Chr2 CDS 60608840 60609025 60608840 ID=MsG0280009908.01.T01:cds;Parent=MsG0280009908.01.T01
Chr2 CDS 60609171 60609353 60609171 ID=MsG0280009908.01.T01:cds;Parent=MsG0280009908.01.T01
Chr2 CDS 60609861 60610056 60609861 ID=MsG0280009908.01.T01:cds;Parent=MsG0280009908.01.T01
Chr2 CDS 60610152 60610243 60610152 ID=MsG0280009908.01.T01:cds;Parent=MsG0280009908.01.T01
Chr2 three_prime_UTR 60610244 60610245 60610244 ID=MsG0280009908.01.T01:three_prime_utr;Parent=MsG0280009908.01.T01
Chr2 three_prime_UTR 60610698 60611000 60610698 ID=MsG0280009908.01.T01:three_prime_utr;Parent=MsG0280009908.01.T01
Gene Sequence

>MsG0280009908.01.T01

ATGAACCAAACAACCCTTTCATCACCACACCATTACCACCTTACAAATCAACCAAACTCAAACACTTTCATCACTTCATCCAAACCCATTAATCCAATCCAATTCCTTCGATTCAACACTCCAAATCGCCAAAACGACAAACAAAACCACCCAGTTCTGCGTTTCGCTGTAAACCCATCCTCACAGACTCCACCGGTCGTTGTTGTCGGATCCGCCAATGCCGACATTTATGTAGAGATCGACCGCCTTCCGGAAGAAGGCGAAACAATCTCGGCGAAAAGTGGGCAGACGTTAGCCGGCGGGAAAGGTGCTAATCAAGCTTGCTGTGGTGCTAAATTATCTCATCCGACTTACTTCCTTGGTCAGGTTGGGAACGATGCTCACGGAAACCTCATCACTGATGCACTTCGAGATGGTGGTGTTCGGCTTGATTATCTTGCCGTTGTGCCTTCTGCTCCAACTGGTCATGCAGTTGTTATGCTTCAGTCTAGTGGCCAGAATTCTATTGTTATTGTTGGTGGTGCTAATGTGAGTTGTTGGCCTCAAACTCTGCCACCTAAGCAGTTGGAGGTTGTTTCCTCCGCAGGGATTGTTCTGTTGCAGAGGGAGATCCCTGATTTCGTTAATGTTCAAGTGGCACAGGCTGCAAAGAATGCTGGTGTGCCAGTAATATTTGATGCTGGGGGAATCGATGCACCTATTCCACAAGAATTACTGGATTTTGTTGATATTTTTAGTCCCAATGAAAGTGAACTTGGTCGCCTTACAGGACTTCCGACTGAAAGTTTTGAAGAGATTAGACAGGCTGCTGCAAAATGCCATAAATTGAAGCAGAAAGAAAGTATATTCCTGTGGATAAGAAAGAAATGGTCTTTATGTAGATATGAAGGAAATGATCATGGTGTAGATATTCATGAGGTTCTCACTGCTTGCTTTTCTTTGGTTGCCCTACTTCCCAAACAAGGTTTTGAAATTTCTTTTGTGTTGACTGTTGAGGGAAATAGAGCTGGGGGTGTTAAGCAAGTTCTTGTGAAACTTGGTGCCAAAGGATCTGCCCTTTTCATAGAAGGAGAAGAACCAATTCAGCAACCTGCCATTTTTGCTAAAACAGTCATCGATACAACTGGAGCTGGTGATACTTTCACTGCTGCTTTTGCTGTGGCCTTGGTGGAGGGCAAGTCCAAGAAGGAATGCCTCAGATTTGCCGCTGCTGCAGCTTCTCTATGTGTTCAAGTTAAGGGAGCCATTCCCAGCATGCCGGATAGGAAATCTGTTCTCGAACTTCTCAATCATCATTGA
Protein sequence

>MsG0280009908.01.T01

MNQTTLSSPHHYHLTNQPNSNTFITSSKPINPIQFLRFNTPNRQNDKQNHPVLRFAVNPSSQTPPVVVVGSANADIYVEIDRLPEEGETISAKSGQTLAGGKGANQACCGAKLSHPTYFLGQVGNDAHGNLITDALRDGGVRLDYLAVVPSAPTGHAVVMLQSSGQNSIVIVGGANVSCWPQTLPPKQLEVVSSAGIVLLQREIPDFVNVQVAQAAKNAGVPVIFDAGGIDAPIPQELLDFVDIFSPNESELGRLTGLPTESFEEIRQAAAKCHKLKQKESIFLWIRKKWSLCRYEGNDHGVDIHEVLTACFSLVALLPKQGFEISFVLTVEGNRAGGVKQVLVKLGAKGSALFIEGEEPIQQPAIFAKTVIDTTGAGDTFTAAFAVALVEGKSKKECLRFAAAAASLCVQVKGAIPSMPDRKSVLELLNHH*