AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010357.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010357.01.T01 MTR_2g082650 99.261 541 4 0 1 541 1 541 0.0 1121
MsG0280010357.01.T01 MTR_2g082650 99.515 412 2 0 130 541 1 412 0.0 857
MsG0280010357.01.T01 MTR_4g133570 67.669 532 104 6 10 541 1 464 0.0 684
MsG0280010357.01.T01 MTR_7g012370 54.095 525 234 3 10 528 1 524 0.0 597
MsG0280010357.01.T01 MTR_6g013840 52.731 531 249 2 10 539 1 530 0.0 582
MsG0280010357.01.T01 MTR_7g012370 52.360 445 205 3 10 448 1 444 8.91e-166 478
MsG0280010357.01.T01 MTR_3g452360 41.682 547 283 8 10 539 1 528 3.01e-142 421
MsG0280010357.01.T01 MTR_3g452360 48.072 389 189 2 154 539 1 379 9.01e-129 381
MsG0280010357.01.T01 MTR_2g027740 41.096 438 236 6 103 539 249 665 6.72e-115 355
MsG0280010357.01.T01 MTR_8g092000 40.865 416 222 5 124 539 187 578 1.32e-113 349
MsG0280010357.01.T01 MTR_7g055600 42.118 425 226 6 115 539 28 432 7.29e-109 332
MsG0280010357.01.T01 MTR_7g057530 42.118 425 226 6 115 539 28 432 7.29e-109 332
MsG0280010357.01.T01 MTR_7g075840 41.587 416 224 5 124 539 266 662 7.34e-109 339
MsG0280010357.01.T01 MTR_3g107930 39.243 423 240 5 118 540 182 587 7.74e-109 337
MsG0280010357.01.T01 MTR_2g015550 39.506 405 221 8 138 539 149 532 1.08e-108 335
MsG0280010357.01.T01 MTR_3g107930 39.243 423 240 5 118 540 259 664 4.91e-108 337
MsG0280010357.01.T01 MTR_6g016380 40.136 441 232 10 108 539 136 553 1.86e-105 327
MsG0280010357.01.T01 MTR_4g109890 38.532 436 232 8 109 537 126 532 3.79e-104 323
MsG0280010357.01.T01 MTR_8g033360 41.361 382 207 5 124 505 233 597 3.40e-100 318
MsG0280010357.01.T01 MTR_2g461670 36.512 430 251 6 110 539 182 589 4.54e-96 304
MsG0280010357.01.T01 MTR_2g006790 35.309 405 214 9 138 539 149 508 1.50e-84 271
MsG0280010357.01.T01 MTR_7g096160 34.053 417 232 6 126 541 280 654 2.17e-84 275
MsG0280010357.01.T01 MTR_1g070490 31.920 401 228 6 142 539 239 597 1.42e-64 221
MsG0280010357.01.T01 MTR_7g074680 30.093 432 255 9 121 541 210 605 2.25e-51 185
MsG0280010357.01.T01 MTR_7g074680 30.093 432 255 9 121 541 230 625 3.24e-51 185
MsG0280010357.01.T01 MTR_7g074680 30.324 432 254 9 121 541 170 565 3.31e-51 184
MsG0280010357.01.T01 MTR_7g074680 30.324 432 254 9 121 541 230 625 4.79e-51 185
MsG0280010357.01.T01 MTR_7g074680 30.324 432 254 9 121 541 250 645 6.90e-51 185
MsG0280010357.01.T01 MTR_7g074680 31.000 400 236 8 146 541 299 662 1.32e-50 184
MsG0280010357.01.T01 MTR_4g133942 39.764 254 110 7 292 539 116 332 4.80e-45 162
MsG0280010357.01.T01 MTR_4g118030 29.255 188 110 6 338 514 145 320 2.68e-23 101
MsG0280010357.01.T01 MTR_4g081360 61.111 72 12 1 470 541 3 58 7.62e-21 86.7
MsG0280010357.01.T01 MTR_3g092310 29.064 203 117 7 338 526 140 329 1.76e-20 93.2
MsG0280010357.01.T01 MTR_5g036580 30.151 199 121 8 338 526 166 356 2.70e-19 90.5
MsG0280010357.01.T01 MTR_3g111600 30.348 201 118 9 338 526 80 270 6.47e-19 87.4
MsG0280010357.01.T01 MTR_7g109210 29.949 197 123 9 338 526 159 348 2.74e-18 87.0
MsG0280010357.01.T01 MTR_7g094230 27.128 188 113 6 338 514 151 325 4.46e-18 86.3
MsG0280010357.01.T01 MTR_6g008900 28.889 225 139 10 313 526 143 357 7.45e-18 85.9
MsG0280010357.01.T01 MTR_4g071620 28.889 225 139 10 313 526 143 357 7.45e-18 85.9
MsG0280010357.01.T01 MTR_1g021855 30.151 199 122 8 338 526 165 356 1.56e-17 84.7
MsG0280010357.01.T01 MTR_8g078240 25.592 211 137 8 335 533 139 341 2.31e-15 78.2
MsG0280010357.01.T01 MTR_1g089820 27.128 188 113 6 338 514 154 328 7.82e-14 73.6
MsG0280010357.01.T01 MTR_5g059865 51.163 86 39 2 171 254 49 133 1.72e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010357.01.T01 AT5G54690 79.588 534 107 2 10 541 1 534 0.0 868
MsG0280010357.01.T01 AT5G15470 55.367 531 235 2 10 539 1 530 0.0 632
MsG0280010357.01.T01 AT3G01040 55.179 531 236 2 10 539 1 530 0.0 624
MsG0280010357.01.T01 AT3G01040 55.179 531 236 2 10 539 1 530 0.0 624
MsG0280010357.01.T01 AT3G01040 52.354 531 218 3 10 539 1 497 0.0 567
MsG0280010357.01.T01 AT3G58790 41.650 509 279 6 40 539 39 538 3.45e-131 393
MsG0280010357.01.T01 AT3G58790 45.813 406 209 3 139 539 7 406 1.30e-127 379
MsG0280010357.01.T01 AT5G47780 43.192 426 214 6 121 539 210 614 3.38e-118 362
MsG0280010357.01.T01 AT3G61130 41.587 416 223 5 124 539 276 671 2.53e-117 362
MsG0280010357.01.T01 AT3G25140 41.647 425 228 6 115 539 153 557 5.99e-113 347
MsG0280010357.01.T01 AT1G18580 38.928 429 242 6 109 537 126 534 1.17e-109 337
MsG0280010357.01.T01 AT3G02350 43.333 420 218 6 121 539 159 559 1.21e-107 333
MsG0280010357.01.T01 AT4G38270 40.976 410 221 6 134 539 286 678 1.06e-105 332
MsG0280010357.01.T01 AT4G38270 40.976 410 221 6 134 539 282 674 1.12e-105 332
MsG0280010357.01.T01 AT2G46480 39.120 432 246 4 108 539 124 538 2.46e-101 316
MsG0280010357.01.T01 AT2G46480 39.120 432 246 4 108 539 137 551 3.39e-101 316
MsG0280010357.01.T01 AT2G20810 40.295 407 217 9 138 539 150 535 1.07e-97 306
MsG0280010357.01.T01 AT2G46480 35.417 432 237 4 108 539 124 513 9.15e-87 278
MsG0280010357.01.T01 AT2G46480 35.417 432 237 4 108 539 137 526 1.39e-86 277
MsG0280010357.01.T01 AT1G06780 32.874 435 251 7 108 541 195 589 1.28e-79 261
MsG0280010357.01.T01 AT1G06780 32.874 435 251 7 108 541 208 602 1.45e-79 261
MsG0280010357.01.T01 AT2G30575 33.573 417 235 7 124 539 233 608 9.13e-79 259
MsG0280010357.01.T01 AT2G38650 32.326 430 239 10 121 539 229 617 1.24e-60 211
MsG0280010357.01.T01 AT2G38650 32.326 430 239 10 121 539 229 617 1.24e-60 211
MsG0280010357.01.T01 AT2G38650 33.036 336 174 9 121 445 229 524 3.52e-38 147
MsG0280010357.01.T01 AT4G02130 30.612 196 123 7 338 526 150 339 2.30e-20 93.2
MsG0280010357.01.T01 AT4G02130 30.612 196 123 7 338 526 150 339 2.30e-20 93.2
MsG0280010357.01.T01 AT4G02130 30.612 196 123 7 338 526 150 339 2.30e-20 93.2
MsG0280010357.01.T01 AT3G28340 29.864 221 125 10 321 526 141 346 2.36e-20 93.2
MsG0280010357.01.T01 AT3G06260 25.373 201 137 6 320 514 131 324 2.55e-20 93.2
MsG0280010357.01.T01 AT3G62660 29.592 196 125 7 338 526 164 353 3.58e-18 86.7
MsG0280010357.01.T01 AT1G70090 26.136 352 201 16 188 526 54 359 4.03e-18 87.0
MsG0280010357.01.T01 AT1G70090 26.136 352 201 16 188 526 54 359 4.03e-18 87.0
MsG0280010357.01.T01 AT1G02720 29.082 196 126 7 338 526 165 354 5.13e-18 86.3
MsG0280010357.01.T01 AT1G02720 29.082 196 126 7 338 526 165 354 5.13e-18 86.3
MsG0280010357.01.T01 AT1G13250 29.302 215 138 8 320 526 125 333 4.53e-16 80.1
MsG0280010357.01.T01 AT1G19300 28.358 201 122 9 338 526 150 340 8.62e-16 79.3
MsG0280010357.01.T01 AT1G24170 28.934 197 126 8 338 526 172 362 1.67e-15 79.0
MsG0280010357.01.T01 AT3G50760 27.053 207 140 7 335 533 133 336 3.04e-15 77.8

Find 153 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTAGGGCCAAGGATTT+TGG 0.132357 2:-68472575 MsG0280010357.01.T01:CDS
TATATTGTGTATGTCTATTT+TGG 0.156127 2:-68474047 MsG0280010357.01.T01:exon
TCCACGTTATAGATCCTTTC+TGG 0.192422 2:-68470628 MsG0280010357.01.T01:CDS
ATATAGATACTCTTGGATTT+TGG 0.205827 2:+68471991 None:intergenic
TAACTGTTTACGACCTAATA+AGG 0.231203 2:-68471762 MsG0280010357.01.T01:CDS
CGTCGAGGCGCCTTTCTTAT+AGG 0.234099 2:-68473925 MsG0280010357.01.T01:CDS
AAAGTTTGGTATATCACTTC+TGG 0.235664 2:+68472416 None:intergenic
ACCTAACCTTGCTTAGCATT+TGG 0.237670 2:+68474270 None:intergenic
AATTATATTTGCAGGTTGTC+TGG 0.274163 2:-68472602 MsG0280010357.01.T01:intron
ATGTGTATAACAACCTTATT+AGG 0.277373 2:+68471749 None:intergenic
TAAGAGATTACAGTTGATTC+AGG 0.287098 2:+68472544 None:intergenic
GAAGGTGAGGTCGCAGTTTA+GGG 0.291398 2:-68471576 MsG0280010357.01.T01:CDS
AGAAGGTGAGGTCGCAGTTT+AGG 0.293050 2:-68471577 MsG0280010357.01.T01:CDS
CCTAACCTTGCTTAGCATTT+GGG 0.308038 2:+68474271 None:intergenic
ACAAGTTTGTGATGTCAAAA+AGG 0.308600 2:-68471186 MsG0280010357.01.T01:CDS
TGTCAAGGTTATGCTGTAAA+AGG 0.317717 2:+68474208 None:intergenic
GTCCACAATGACCTTAGTTC+TGG 0.325187 2:+68470497 None:intergenic
CTGCAACATTAGAGCATGAT+AGG 0.327435 2:-68470438 MsG0280010357.01.T01:exon
CAATTGGTTCATCTAAAGTT+TGG 0.330150 2:+68472402 None:intergenic
AAGTTTAACTGCAAATGTTT+TGG 0.330421 2:+68472295 None:intergenic
ACAAACTTTAGAAGAGTTCA+TGG 0.335034 2:-68472345 MsG0280010357.01.T01:CDS
ACCTAGTCCTTTGTTCCATA+AGG 0.339141 2:+68472017 None:intergenic
ATGATATGTATTGCTTATAT+TGG 0.339918 2:+68471051 None:intergenic
CTGTTATTAGGTAACCCTTA+TGG 0.345194 2:-68472032 MsG0280010357.01.T01:intron
CCTTTGAAAACCAATCAAAA+TGG 0.349718 2:+68471636 None:intergenic
AGGCATGTTACTGTCCTTCC+AGG 0.350319 2:-68473983 MsG0280010357.01.T01:CDS
TTCTCCATTGCTTCTAAAAC+AGG 0.359856 2:+68471605 None:intergenic
TGCAGTTAAACTTAGAGAAA+TGG 0.369361 2:-68472285 MsG0280010357.01.T01:intron
TATCTGAGGCTAAAACAAAA+TGG 0.373236 2:+68471825 None:intergenic
TTCTGGCATATGCTTGGATT+GGG 0.375631 2:-68470611 MsG0280010357.01.T01:CDS
TAGTTCTTCTTCCACTGATT+AGG 0.378429 2:-68470343 MsG0280010357.01.T01:three_prime_UTR
AAGGCGTGCTGCTGCGTTGT+TGG 0.378821 2:+68471898 None:intergenic
AAATTCAATGAATGGTCCTT+TGG 0.381479 2:+68470066 None:intergenic
ATGAACTCTTCTAAAGTTTG+TGG 0.385053 2:+68472347 None:intergenic
CCTAGTCCTTTGTTCCATAA+GGG 0.386334 2:+68472018 None:intergenic
GGCTAAAACAAAATGGTAAT+AGG 0.387821 2:+68471832 None:intergenic
TTTCTGGCATATGCTTGGAT+TGG 0.395599 2:-68470612 MsG0280010357.01.T01:CDS
TATGCTTGGATTGGGATATC+AGG 0.401194 2:-68470603 MsG0280010357.01.T01:CDS
TCAATCACAGCAGGTGATAA+AGG 0.405589 2:+68471674 None:intergenic
TTTAGTTCATCATTGCCAAT+TGG 0.409872 2:+68472386 None:intergenic
CAACCGAGACAACAATGATA+TGG 0.411465 2:-68470310 MsG0280010357.01.T01:three_prime_UTR
CCTGGATTGATAGCATTTCA+TGG 0.413843 2:-68470656 MsG0280010357.01.T01:CDS
TCAAGACAATGAAGTTGTTT+CGG 0.419494 2:+68471944 None:intergenic
ACAGCTGTGGATGGCATTGA+TGG 0.427978 2:-68473845 MsG0280010357.01.T01:CDS
AACGAATGTGCTTGGGCCTA+CGG 0.428513 2:-68471109 MsG0280010357.01.T01:CDS
CTTATTATCCCATGCAGGCT+TGG 0.429889 2:-68471709 MsG0280010357.01.T01:CDS
TTTATCACCTGCTGTGATTG+AGG 0.440648 2:-68471672 MsG0280010357.01.T01:CDS
GATCCTTTCTGGCATATGCT+TGG 0.446300 2:-68470617 MsG0280010357.01.T01:CDS
CCTTGCTTAGCATTTGGGTC+AGG 0.448391 2:+68474276 None:intergenic
AGATAATGTGCTTGCTGCCT+CGG 0.449906 2:-68471807 MsG0280010357.01.T01:CDS
AGAGTTCATGGTTAAAATGA+AGG 0.450820 2:-68472333 MsG0280010357.01.T01:CDS
CAAACTTTAGATGAACCAAT+TGG 0.453888 2:-68472401 MsG0280010357.01.T01:CDS
GCTTTGCCCTGCCATTGAAA+TGG 0.454180 2:+68470540 None:intergenic
TCAATCCCAACGAATGTGCT+TGG 0.455578 2:-68471117 MsG0280010357.01.T01:CDS
AATTGGCAATGATGAACTAA+AGG 0.456766 2:-68472384 MsG0280010357.01.T01:CDS
TTAAATCAGACCTGAGTTTG+TGG 0.457853 2:-68470697 MsG0280010357.01.T01:CDS
GTGTCATCCATTTCAATGGC+AGG 0.458742 2:-68470547 MsG0280010357.01.T01:CDS
AAGTTTGGTATATCACTTCT+GGG 0.462799 2:+68472417 None:intergenic
TAAGCAATACATATCATCAC+TGG 0.462837 2:-68471045 MsG0280010357.01.T01:CDS
GCATGGGATAATAAGTCTTC+CGG 0.467541 2:+68471717 None:intergenic
TGCATATATCTCCAAGTTTG+AGG 0.468657 2:-68474003 MsG0280010357.01.T01:CDS
TTGTGAAACCTTGAGGATGC+AGG 0.473802 2:+68470123 None:intergenic
AACTCTTTAAGTCCTTTGCC+TGG 0.474489 2:+68473965 None:intergenic
ACCTGAGTTTGTGGCAGCTA+GGG 0.474996 2:-68470688 MsG0280010357.01.T01:CDS
CAATCCCAACGAATGTGCTT+GGG 0.478614 2:-68471116 MsG0280010357.01.T01:CDS
GAAATGGTATTTGTAATCCA+AGG 0.478797 2:-68470382 MsG0280010357.01.T01:three_prime_UTR
ATTCAGTGATGAACCACATT+CGG 0.485585 2:-68471469 MsG0280010357.01.T01:CDS
ATTATATTTGCAGGTTGTCT+GGG 0.486059 2:-68472601 MsG0280010357.01.T01:intron
TAGAAACTAAATTCAATGAA+TGG 0.486412 2:+68470058 None:intergenic
ACAGTAACATGCCTCAAACT+TGG 0.488081 2:+68473992 None:intergenic
CATTGTTGTCTCGGTTGTCA+TGG 0.491035 2:+68470316 None:intergenic
TAGGCCCAAGCACATTCGTT+GGG 0.491286 2:+68471112 None:intergenic
CTTTAAGTCCTTTGCCTGGA+AGG 0.491497 2:+68473969 None:intergenic
ATTGGCAATGATGAACTAAA+GGG 0.496348 2:-68472383 MsG0280010357.01.T01:CDS
GCAGTTTAGGGGAGGTTCAT+CGG 0.501375 2:-68471564 MsG0280010357.01.T01:CDS
CATGGCGATATAGATACTCT+TGG 0.502065 2:+68471984 None:intergenic
AAGACCACCTTGTTAAGACT+TGG 0.504189 2:+68471310 None:intergenic
GACATGAATGGAAAAGTGAA+TGG 0.504634 2:-68471235 MsG0280010357.01.T01:CDS
CTGTGGGACATTGACATGAA+TGG 0.510723 2:-68471247 MsG0280010357.01.T01:CDS
ACCTGCTGTGATTGAGGTCA+AGG 0.515480 2:-68471666 MsG0280010357.01.T01:CDS
CAATGAGAACCAAGCCTGCA+TGG 0.521244 2:+68471700 None:intergenic
CCCAAATGCTAAGCAAGGTT+AGG 0.522482 2:-68474271 MsG0280010357.01.T01:five_prime_UTR
TAGGAATTGTCAACAAGGGC+AGG 0.527659 2:+68471851 None:intergenic
ACTGTATGATCAACAAATAG+AGG 0.531080 2:+68474164 None:intergenic
ATGCCATATCATTGTTGTCT+CGG 0.531199 2:+68470307 None:intergenic
CCATGAAATGCTATCAATCC+AGG 0.531538 2:+68470656 None:intergenic
ATATCATCACTGGGTTGCGC+AGG 0.531838 2:-68471035 MsG0280010357.01.T01:intron
TCAACTACGAGTTACAGAAA+TGG 0.532738 2:-68470398 MsG0280010357.01.T01:three_prime_UTR
TTGATTTGGAGGCTTGGAGG+AGG 0.533922 2:-68471075 MsG0280010357.01.T01:CDS
TCCCTAGCTGCCACAAACTC+AGG 0.537117 2:+68470687 None:intergenic
GCTGGTGTCATCCATTTCAA+TGG 0.546735 2:-68470551 MsG0280010357.01.T01:CDS
GACCTGAGTTTGTGGCAGCT+AGG 0.547386 2:-68470689 MsG0280010357.01.T01:CDS
AGAAGAGCATCCTATAAGAA+AGG 0.547606 2:+68473915 None:intergenic
GTATGCTGCTTGATGCTACA+TGG 0.547890 2:+68471966 None:intergenic
GTAGGCCCAAGCACATTCGT+TGG 0.549124 2:+68471111 None:intergenic
AACTGATCTTACACCTCTGT+GGG 0.552088 2:-68471263 MsG0280010357.01.T01:CDS
CAGCTAGGGACATTACCTCC+TGG 0.553175 2:-68470674 MsG0280010357.01.T01:CDS
TTCATCACTGAATTATACTT+CGG 0.553891 2:+68471479 None:intergenic
AACTCGTAGTTGAGAGGTCA+TGG 0.554697 2:+68470408 None:intergenic
AGCAATGGAGAAAGATCAGA+AGG 0.555930 2:-68471594 MsG0280010357.01.T01:CDS
TGTTATTGCAGCAAAACTAC+AGG 0.556038 2:-68471510 MsG0280010357.01.T01:CDS
GGTCGTCTACCCAAAATCCT+TGG 0.557130 2:+68472565 None:intergenic
GCCTTGACCTCAATCACAGC+AGG 0.559932 2:+68471665 None:intergenic
AGACATACACAATATAAGAC+AGG 0.561353 2:+68474054 None:intergenic
CAAAACAAGTGCTCTACCAT+AGG 0.561432 2:-68473821 MsG0280010357.01.T01:intron
TTCATGGTTAAAATGAAGGA+AGG 0.563822 2:-68472329 MsG0280010357.01.T01:CDS
ATGGTTAAAATGAAGGAAGG+TGG 0.565029 2:-68472326 MsG0280010357.01.T01:CDS
AATCCAAGCATATGCCAGAA+AGG 0.569673 2:+68470614 None:intergenic
AAGGTTATGCTGTAAAAGGA+AGG 0.570046 2:+68474212 None:intergenic
GTTACTGTCCTTCCAGGCAA+AGG 0.576045 2:-68473977 MsG0280010357.01.T01:CDS
GAAGACTTATTATCCCATGC+AGG 0.581237 2:-68471714 MsG0280010357.01.T01:CDS
TTCTGTAACTCGTAGTTGAG+AGG 0.584112 2:+68470402 None:intergenic
TGTGAAATGAAATAAAGAAG+AGG 0.586272 2:-68474131 MsG0280010357.01.T01:five_prime_UTR
CGGGTAGATGTATCCGAATG+TGG 0.586568 2:+68471456 None:intergenic
TTCCAGAACTAAGGTCATTG+TGG 0.590238 2:-68470499 MsG0280010357.01.T01:CDS
TGCAACATTAGAGCATGATA+GGG 0.593846 2:-68470437 MsG0280010357.01.T01:exon
GTTGACGATGTTGAGAATGC+TGG 0.595078 2:-68470569 MsG0280010357.01.T01:CDS
AATGAGAACCAAGCCTGCAT+GGG 0.602294 2:+68471701 None:intergenic
TATGGAACAAAGGACTAGGT+TGG 0.602971 2:-68472014 MsG0280010357.01.T01:CDS
AACTGCAAGAACTCATGTCA+AGG 0.603464 2:+68474193 None:intergenic
AAATGGTATTTGTAATCCAA+GGG 0.606129 2:-68470381 MsG0280010357.01.T01:three_prime_UTR
CCCTTATGGAACAAAGGACT+AGG 0.608232 2:-68472018 MsG0280010357.01.T01:CDS
AAGCTAATTGTGAAACCTTG+AGG 0.610786 2:+68470116 None:intergenic
TGTCATCCATTTCAATGGCA+GGG 0.612684 2:-68470546 MsG0280010357.01.T01:CDS
AGGTAACCCTTATGGAACAA+AGG 0.619724 2:-68472024 MsG0280010357.01.T01:CDS
TCAATGGCAGGGCAAAGCCA+TGG 0.623067 2:-68470535 MsG0280010357.01.T01:CDS
TGAAATAAAAGAGAGACCAA+AGG 0.623407 2:-68470082 MsG0280010357.01.T01:three_prime_UTR
GTTGTTTCCAAGTCTTAACA+AGG 0.625853 2:-68471317 MsG0280010357.01.T01:CDS
AAACTGATCTTACACCTCTG+TGG 0.626571 2:-68471264 MsG0280010357.01.T01:CDS
CCTGACCCAAATGCTAAGCA+AGG 0.628392 2:-68474276 MsG0280010357.01.T01:five_prime_UTR
GCAATGATGAACTAAAGGGA+AGG 0.629505 2:-68472379 MsG0280010357.01.T01:CDS
GTGAGGTCGCAGTTTAGGGG+AGG 0.635528 2:-68471572 MsG0280010357.01.T01:CDS
GTTCTGCAGACGGTAGCTGA+AGG 0.636222 2:+68471879 None:intergenic
GGAGCAGTGGAAACATGCAA+TGG 0.639468 2:-68471214 MsG0280010357.01.T01:CDS
GGCAGCAAGCACATTATCTG+AGG 0.641548 2:+68471811 None:intergenic
GTTTCCAAGTCTTAACAAGG+TGG 0.642127 2:-68471314 MsG0280010357.01.T01:CDS
GGAAAAGCTATGTCTAGCCA+TGG 0.645591 2:+68470518 None:intergenic
TGGAAAAGTGAATGGAGCAG+TGG 0.647140 2:-68471227 MsG0280010357.01.T01:CDS
GGTAATAGGAATTGTCAACA+AGG 0.647228 2:+68471846 None:intergenic
AAGCAATACATATCATCACT+GGG 0.652205 2:-68471044 MsG0280010357.01.T01:CDS
TGGAGAAAGATCAGAAGGTG+AGG 0.652916 2:-68471589 MsG0280010357.01.T01:CDS
TTATACACATAATTACAGAC+CGG 0.653156 2:-68471736 MsG0280010357.01.T01:CDS
GTCATGGAATGCCTAATCAG+TGG 0.656243 2:+68470332 None:intergenic
GCAGGAACTAGTTCTGCAGA+CGG 0.658382 2:+68471869 None:intergenic
GTAATAGGAATTGTCAACAA+GGG 0.660966 2:+68471847 None:intergenic
AAGGTGAGGTCGCAGTTTAG+GGG 0.680449 2:-68471575 MsG0280010357.01.T01:CDS
GCCAGAAAGGATCTATAACG+TGG 0.683226 2:+68470627 None:intergenic
TCAAAGTGAAAGTTGCGTCG+AGG 0.683701 2:-68473940 MsG0280010357.01.T01:CDS
GTATCACAATGTCATCGTCG+AGG 0.702865 2:+68471287 None:intergenic
GAGTGATGTTGCAACAACCG+AGG 0.712252 2:+68471790 None:intergenic
TGAAATGCTATCAATCCAGG+AGG 0.724414 2:+68470659 None:intergenic
CATTCGGATACATCTACCCG+AGG 0.731272 2:-68471453 MsG0280010357.01.T01:intron
TTCATGTCAATGTCCCACAG+AGG 0.769997 2:+68471250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATAAAAAAAACCAAA+TGG + Chr2:68470235-68470254 None:intergenic 10.0%
!! ATTTCATTATAAAATAGATA+AGG - Chr2:68471313-68471332 MsG0280010357.01.T01:CDS 10.0%
!!! TAATGAAATTTTTTATTCTA+TGG + Chr2:68471302-68471321 None:intergenic 10.0%
!! ACTGTTAAAATAACTTATAA+TGG + Chr2:68471506-68471525 None:intergenic 15.0%
!!! AATGATTCATATTTTAAACT+CGG - Chr2:68470628-68470647 MsG0280010357.01.T01:CDS 15.0%
!!! AATTTAGATCTATTTTCATA+TGG - Chr2:68471604-68471623 MsG0280010357.01.T01:CDS 15.0%
!!! ATTTTACTTTGATTTTCTAT+TGG - Chr2:68471843-68471862 MsG0280010357.01.T01:CDS 15.0%
!!! TGAAATTTTTAGATATTAGA+GGG + Chr2:68473180-68473199 None:intergenic 15.0%
!!! TTGAAATTTTTAGATATTAG+AGG + Chr2:68473181-68473200 None:intergenic 15.0%
!!! TTTTGATATATGTTATTTCA+AGG + Chr2:68470082-68470101 None:intergenic 15.0%
!! AAGATAATTCATTATATGCA+AGG + Chr2:68471362-68471381 None:intergenic 20.0%
!! ATGATAAATGAACTGTTATT+AGG - Chr2:68472270-68472289 MsG0280010357.01.T01:intron 20.0%
!! ATGATATGTATTGCTTATAT+TGG + Chr2:68473266-68473285 None:intergenic 20.0%
!! CAAATCAATAAAAATGTTAC+CGG - Chr2:68471037-68471056 MsG0280010357.01.T01:CDS 20.0%
!! CACTAGAATTATTTCAAATT+TGG + Chr2:68472214-68472233 None:intergenic 20.0%
!! CATTTGTCTTTATTGTATTA+TGG + Chr2:68473476-68473495 None:intergenic 20.0%
!! GTATTACATTCTACAAAAAA+GGG - Chr2:68473309-68473328 MsG0280010357.01.T01:intron 20.0%
!! TAACTTCTAATTATATTTGC+AGG - Chr2:68471704-68471723 MsG0280010357.01.T01:CDS 20.0%
!! TAGAAACTAAATTCAATGAA+TGG + Chr2:68474259-68474278 None:intergenic 20.0%
!! TATCACTCATATTGTTATAT+CGG - Chr2:68471661-68471680 MsG0280010357.01.T01:CDS 20.0%
!! TGTATTACATTCTACAAAAA+AGG - Chr2:68473308-68473327 MsG0280010357.01.T01:intron 20.0%
!! TTTATTGTATTATGGTAGAA+GGG + Chr2:68473468-68473487 None:intergenic 20.0%
!!! AACTTGTCTGTATTTTTATA+TGG - Chr2:68471530-68471549 MsG0280010357.01.T01:CDS 20.0%
!!! AAGATTTTAAAATCAAAAGC+CGG + Chr2:68471059-68471078 None:intergenic 20.0%
!!! ATAGTAATTATGTCACATTT+TGG - Chr2:68470851-68470870 MsG0280010357.01.T01:intron 20.0%
!!! CATTTTTATTGATTTGTTAG+AGG + Chr2:68471033-68471052 None:intergenic 20.0%
!!! GATGATTCATATTTTAAACT+CGG - Chr2:68470758-68470777 MsG0280010357.01.T01:intron 20.0%
!!! GTAAAATTTTAAAGCAAGAA+AGG + Chr2:68474039-68474058 None:intergenic 20.0%
!!! TATATTGTGTATGTCTATTT+TGG - Chr2:68470267-68470286 MsG0280010357.01.T01:three_prime_UTR 20.0%
!!! TATTTTATCTTGCAATTACA+TGG - Chr2:68474277-68474296 MsG0280010357.01.T01:five_prime_UTR 20.0%
! AAATGGTATTTGTAATCCAA+GGG - Chr2:68473933-68473952 MsG0280010357.01.T01:CDS 25.0%
! ACAATTAGAATAGTTACTGT+TGG - Chr2:68471265-68471284 MsG0280010357.01.T01:CDS 25.0%
! ACTGTAAAATTTCAATCCAA+CGG + Chr2:68472126-68472145 None:intergenic 25.0%
! AGTGCACAAAAACATTTATT+TGG + Chr2:68472943-68472962 None:intergenic 25.0%
! ATCATTTGATCTTCAATCAA+TGG - Chr2:68470812-68470831 MsG0280010357.01.T01:intron 25.0%
! ATGTGTATAACAACCTTATT+AGG + Chr2:68472568-68472587 None:intergenic 25.0%
! CTTTATTGTATTATGGTAGA+AGG + Chr2:68473469-68473488 None:intergenic 25.0%
! TGTGAAATGAAATAAAGAAG+AGG - Chr2:68470183-68470202 MsG0280010357.01.T01:three_prime_UTR 25.0%
! TTAAGTCTTAGCTTCATTAT+AGG + Chr2:68471586-68471605 None:intergenic 25.0%
! TTATACACATAATTACAGAC+CGG - Chr2:68472578-68472597 MsG0280010357.01.T01:CDS 25.0%
! TTATTGTATTATGGTAGAAG+GGG + Chr2:68473467-68473486 None:intergenic 25.0%
! TTCATCACTGAATTATACTT+CGG + Chr2:68472838-68472857 None:intergenic 25.0%
!! AAGTTTAACTGCAAATGTTT+TGG + Chr2:68472022-68472041 None:intergenic 25.0%
!! ATATAGATACTCTTGGATTT+TGG + Chr2:68472326-68472345 None:intergenic 25.0%
!!! AAATGACATGACTTTTTCAT+AGG - Chr2:68471873-68471892 MsG0280010357.01.T01:CDS 25.0%
!!! AAGCATGTTATTTTTTGCAA+AGG - Chr2:68470962-68470981 MsG0280010357.01.T01:intron 25.0%
!!! ATTTTGATTGGTTTTCAAAG+GGG - Chr2:68472680-68472699 MsG0280010357.01.T01:intron 25.0%
!!! CATTTTGATTGGTTTTCAAA+GGG - Chr2:68472679-68472698 MsG0280010357.01.T01:intron 25.0%
!!! TTACTTTGATTTTCTATTGG+TGG - Chr2:68471846-68471865 MsG0280010357.01.T01:CDS 25.0%
!!! TTTATTGATTTGTTAGAGGT+TGG + Chr2:68471029-68471048 None:intergenic 25.0%
AAAGTTTGGTATATCACTTC+TGG + Chr2:68471901-68471920 None:intergenic 30.0%
AAATTCAATGAATGGTCCTT+TGG + Chr2:68474251-68474270 None:intergenic 30.0%
AACATAAAGTCCAGAATTTG+AGG + Chr2:68471433-68471452 None:intergenic 30.0%
AACCAAATGGAAAAACAAAC+AGG + Chr2:68470222-68470241 None:intergenic 30.0%
AAGCAATACATATCATCACT+GGG - Chr2:68473270-68473289 MsG0280010357.01.T01:intron 30.0%
AAGTTTGGTATATCACTTCT+GGG + Chr2:68471900-68471919 None:intergenic 30.0%
AATTATATTTGCAGGTTGTC+TGG - Chr2:68471712-68471731 MsG0280010357.01.T01:CDS 30.0%
AATTGGCAATGATGAACTAA+AGG - Chr2:68471930-68471949 MsG0280010357.01.T01:CDS 30.0%
ACAAGTTTGTGATGTCAAAA+AGG - Chr2:68473128-68473147 MsG0280010357.01.T01:intron 30.0%
ACTGTATGATCAACAAATAG+AGG + Chr2:68470153-68470172 None:intergenic 30.0%
AGACATACACAATATAAGAC+AGG + Chr2:68470263-68470282 None:intergenic 30.0%
AGAGTTCATGGTTAAAATGA+AGG - Chr2:68471981-68472000 MsG0280010357.01.T01:CDS 30.0%
ATGTAGGAAATAGATTCCTT+AGG + Chr2:68470878-68470897 None:intergenic 30.0%
ATTATATTTGCAGGTTGTCT+GGG - Chr2:68471713-68471732 MsG0280010357.01.T01:CDS 30.0%
ATTGGCAATGATGAACTAAA+GGG - Chr2:68471931-68471950 MsG0280010357.01.T01:CDS 30.0%
CAAACTTTAGATGAACCAAT+TGG - Chr2:68471913-68471932 MsG0280010357.01.T01:CDS 30.0%
GAAATGGTATTTGTAATCCA+AGG - Chr2:68473932-68473951 MsG0280010357.01.T01:CDS 30.0%
GGCTAAAACAAAATGGTAAT+AGG + Chr2:68472485-68472504 None:intergenic 30.0%
GTAATAGGAATTGTCAACAA+GGG + Chr2:68472470-68472489 None:intergenic 30.0%
GTTGTCTGGGAAAAAAATTA+GGG - Chr2:68471726-68471745 MsG0280010357.01.T01:CDS 30.0%
TAACTGTTTACGACCTAATA+AGG - Chr2:68472552-68472571 MsG0280010357.01.T01:intron 30.0%
TAAGCAATACATATCATCAC+TGG - Chr2:68473269-68473288 MsG0280010357.01.T01:intron 30.0%
TCAAGACAATGAAGTTGTTT+CGG + Chr2:68472373-68472392 None:intergenic 30.0%
TGAAATAAAAGAGAGACCAA+AGG - Chr2:68474232-68474251 MsG0280010357.01.T01:five_prime_UTR 30.0%
TGCAGTTAAACTTAGAGAAA+TGG - Chr2:68472029-68472048 MsG0280010357.01.T01:intron 30.0%
TGTAGGAAATAGATTCCTTA+GGG + Chr2:68470877-68470896 None:intergenic 30.0%
TTCATGGTTAAAATGAAGGA+AGG - Chr2:68471985-68472004 MsG0280010357.01.T01:CDS 30.0%
! ACAAACTTTAGAAGAGTTCA+TGG - Chr2:68471969-68471988 MsG0280010357.01.T01:CDS 30.0%
! AGTTTTGCTGCAATAACATT+TGG + Chr2:68472802-68472821 None:intergenic 30.0%
! ATCTCATTTTCTTTTTCCCT+TGG + Chr2:68473952-68473971 None:intergenic 30.0%
! CAATTGGTTCATCTAAAGTT+TGG + Chr2:68471915-68471934 None:intergenic 30.0%
! CCTTTGAAAACCAATCAAAA+TGG + Chr2:68472681-68472700 None:intergenic 30.0%
! TAAGAGATTACAGTTGATTC+AGG + Chr2:68471773-68471792 None:intergenic 30.0%
! TATCTGAGGCTAAAACAAAA+TGG + Chr2:68472492-68472511 None:intergenic 30.0%
! TTTAGTTCATCATTGCCAAT+TGG + Chr2:68471931-68471950 None:intergenic 30.0%
! TTTGAGACTTCAACTTGAAA+AGG + Chr2:68472248-68472267 None:intergenic 30.0%
! TTTTACAGTTCTCAATCCAA+CGG - Chr2:68472137-68472156 MsG0280010357.01.T01:intron 30.0%
!! AACCTGTTTGTTTTTCCATT+TGG - Chr2:68470217-68470236 MsG0280010357.01.T01:three_prime_UTR 30.0%
!! ATGAACTCTTCTAAAGTTTG+TGG + Chr2:68471970-68471989 None:intergenic 30.0%
!! ATTTAACTTGCCTCAAATTC+TGG - Chr2:68471420-68471439 MsG0280010357.01.T01:intron 30.0%
!! CTTATGAGCTATCACTTTTA+TGG + Chr2:68473558-68473577 None:intergenic 30.0%
!! TCTTTCAAACAAAAGGCATT+GGG + Chr2:68473374-68473393 None:intergenic 30.0%
!! TGTGTATGTCTATTTTGGAT+TGG - Chr2:68470272-68470291 MsG0280010357.01.T01:three_prime_UTR 30.0%
!!! CATGAACATTTTTGATTTGG+AGG - Chr2:68473228-68473247 MsG0280010357.01.T01:intron 30.0%
!!! CCATTTTGATTGGTTTTCAA+AGG - Chr2:68472678-68472697 MsG0280010357.01.T01:intron 30.0%
AAGCGAGATATTGTGACTAA+AGG + Chr2:68470579-68470598 None:intergenic 35.0%
AAGCTAATTGTGAAACCTTG+AGG + Chr2:68474201-68474220 None:intergenic 35.0%
AAGGTTATGCTGTAAAAGGA+AGG + Chr2:68470105-68470124 None:intergenic 35.0%
ACCAAGCTCTTTCAAACAAA+AGG + Chr2:68473381-68473400 None:intergenic 35.0%
ACCAATAACACGAATTCTAG+TGG + Chr2:68472178-68472197 None:intergenic 35.0%
ACCACTAGAATTCGTGTTAT+TGG - Chr2:68472174-68472193 MsG0280010357.01.T01:intron 35.0%
ATCAAAAATGTTCATGCCGT+AGG + Chr2:68473224-68473243 None:intergenic 35.0%
ATGCCATATCATTGTTGTCT+CGG + Chr2:68474010-68474029 None:intergenic 35.0%
ATGGTTAAAATGAAGGAAGG+TGG - Chr2:68471988-68472007 MsG0280010357.01.T01:CDS 35.0%
ATTCAGTGATGAACCACATT+CGG - Chr2:68472845-68472864 MsG0280010357.01.T01:intron 35.0%
CTGTTATTAGGTAACCCTTA+TGG - Chr2:68472282-68472301 MsG0280010357.01.T01:intron 35.0%
GACATGAATGGAAAAGTGAA+TGG - Chr2:68473079-68473098 MsG0280010357.01.T01:intron 35.0%
GGTAATAGGAATTGTCAACA+AGG + Chr2:68472471-68472490 None:intergenic 35.0%
GGTTGTCTGGGAAAAAAATT+AGG - Chr2:68471725-68471744 MsG0280010357.01.T01:CDS 35.0%
TATAAAAACCTGCATCCTCA+AGG - Chr2:68474183-68474202 MsG0280010357.01.T01:five_prime_UTR 35.0%
TCAACTACGAGTTACAGAAA+TGG - Chr2:68473916-68473935 MsG0280010357.01.T01:CDS 35.0%
TCTGTTATTACAGATTCACC+TGG + Chr2:68471164-68471183 None:intergenic 35.0%
TGATTACGCAGTTAGAAAGA+AGG - Chr2:68470712-68470731 MsG0280010357.01.T01:intron 35.0%
TGCAACATTAGAGCATGATA+GGG - Chr2:68473877-68473896 MsG0280010357.01.T01:CDS 35.0%
TGCATATATCTCCAAGTTTG+AGG - Chr2:68470311-68470330 MsG0280010357.01.T01:three_prime_UTR 35.0%
TGTCAAGGTTATGCTGTAAA+AGG + Chr2:68470109-68470128 None:intergenic 35.0%
TGTTATTGCAGCAAAACTAC+AGG - Chr2:68472804-68472823 MsG0280010357.01.T01:intron 35.0%
TTAAATCAGACCTGAGTTTG+TGG - Chr2:68473617-68473636 MsG0280010357.01.T01:intron 35.0%
TTTCAAATTTGGATTCCGTG+CGG + Chr2:68472203-68472222 None:intergenic 35.0%
! AAAATTAGGGCCAAGGATTT+TGG - Chr2:68471739-68471758 MsG0280010357.01.T01:CDS 35.0%
! AAATTAGGGCCAAGGATTTT+GGG - Chr2:68471740-68471759 MsG0280010357.01.T01:CDS 35.0%
! ACATAGCTTTTCCAGAACTA+AGG - Chr2:68473806-68473825 MsG0280010357.01.T01:intron 35.0%
! CTCTTTCAAACAAAAGGCAT+TGG + Chr2:68473375-68473394 None:intergenic 35.0%
! GTTGTTTCCAAGTCTTAACA+AGG - Chr2:68472997-68473016 MsG0280010357.01.T01:intron 35.0%
! TAGTTCTTCTTCCACTGATT+AGG - Chr2:68473971-68473990 MsG0280010357.01.T01:CDS 35.0%
!! AGAAGAGCATCCTATAAGAA+AGG + Chr2:68470402-68470421 None:intergenic 35.0%
!! CGGCATGAACATTTTTGATT+TGG - Chr2:68473225-68473244 MsG0280010357.01.T01:intron 35.0%
!! TTCTCCATTGCTTCTAAAAC+AGG + Chr2:68472712-68472731 None:intergenic 35.0%
!!! ACATTTTTGATTTGGAGGCT+TGG - Chr2:68473233-68473252 MsG0280010357.01.T01:intron 35.0%
!!! TGTGTTTGTTTTAACAGCTG+TGG - Chr2:68470456-68470475 MsG0280010357.01.T01:CDS 35.0%
!!! TTTGTTTTAACAGCTGTGGA+TGG - Chr2:68470460-68470479 MsG0280010357.01.T01:CDS 35.0%
AAACTGATCTTACACCTCTG+TGG - Chr2:68473050-68473069 MsG0280010357.01.T01:intron 40.0%
AACCAAAACGTGACGAAGTT+TGG + Chr2:68471634-68471653 None:intergenic 40.0%
AACTCTTTAAGTCCTTTGCC+TGG + Chr2:68470352-68470371 None:intergenic 40.0%
AACTGATCTTACACCTCTGT+GGG - Chr2:68473051-68473070 MsG0280010357.01.T01:intron 40.0%
AACTGCAAGAACTCATGTCA+AGG + Chr2:68470124-68470143 None:intergenic 40.0%
AAGACCACCTTGTTAAGACT+TGG + Chr2:68473007-68473026 None:intergenic 40.0%
AAGCATGAACACATGTGTGA+AGG - Chr2:68470910-68470929 MsG0280010357.01.T01:intron 40.0%
AATCCAAGCATATGCCAGAA+AGG + Chr2:68473703-68473722 None:intergenic 40.0%
AATTCTAGTGGTCAGCACAT+CGG + Chr2:68472166-68472185 None:intergenic 40.0%
ACAGTAACATGCCTCAAACT+TGG + Chr2:68470325-68470344 None:intergenic 40.0%
ACCAAAACGTGACGAAGTTT+GGG + Chr2:68471633-68471652 None:intergenic 40.0%
ACCTAACCTTGCTTAGCATT+TGG + Chr2:68470047-68470066 None:intergenic 40.0%
ACCTAGTCCTTTGTTCCATA+AGG + Chr2:68472300-68472319 None:intergenic 40.0%
AGCAATGGAGAAAGATCAGA+AGG - Chr2:68472720-68472739 MsG0280010357.01.T01:intron 40.0%
AGGTAACCCTTATGGAACAA+AGG - Chr2:68472290-68472309 MsG0280010357.01.T01:CDS 40.0%
ATACATCTACCCGAGGTAAA+AGG - Chr2:68472868-68472887 MsG0280010357.01.T01:intron 40.0%
CAAAACAAGTGCTCTACCAT+AGG - Chr2:68470493-68470512 MsG0280010357.01.T01:CDS 40.0%
CAACCGAGACAACAATGATA+TGG - Chr2:68474004-68474023 MsG0280010357.01.T01:CDS 40.0%
CAACTTCAATTGTTGAGCCA+AGG - Chr2:68473439-68473458 MsG0280010357.01.T01:intron 40.0%
CATGGCGATATAGATACTCT+TGG + Chr2:68472333-68472352 None:intergenic 40.0%
CCATGAAATGCTATCAATCC+AGG + Chr2:68473661-68473680 None:intergenic 40.0%
CCTAACCTTGCTTAGCATTT+GGG + Chr2:68470046-68470065 None:intergenic 40.0%
CCTAGTCCTTTGTTCCATAA+GGG + Chr2:68472299-68472318 None:intergenic 40.0%
CTGCAACATTAGAGCATGAT+AGG - Chr2:68473876-68473895 MsG0280010357.01.T01:CDS 40.0%
GAAGACTTATTATCCCATGC+AGG - Chr2:68472600-68472619 MsG0280010357.01.T01:intron 40.0%
GCAATGATGAACTAAAGGGA+AGG - Chr2:68471935-68471954 MsG0280010357.01.T01:CDS 40.0%
GCATGGGATAATAAGTCTTC+CGG + Chr2:68472600-68472619 None:intergenic 40.0%
GTTTCCAAGTCTTAACAAGG+TGG - Chr2:68473000-68473019 MsG0280010357.01.T01:intron 40.0%
TACATCTACCCGAGGTAAAA+GGG - Chr2:68472869-68472888 MsG0280010357.01.T01:intron 40.0%
TATGGAACAAAGGACTAGGT+TGG - Chr2:68472300-68472319 MsG0280010357.01.T01:CDS 40.0%
TCAATCACAGCAGGTGATAA+AGG + Chr2:68472643-68472662 None:intergenic 40.0%
TCCACGTTATAGATCCTTTC+TGG - Chr2:68473686-68473705 MsG0280010357.01.T01:intron 40.0%
TGAAATGCTATCAATCCAGG+AGG + Chr2:68473658-68473677 None:intergenic 40.0%
TGGGAAAAAAATTAGGGCCA+AGG - Chr2:68471732-68471751 MsG0280010357.01.T01:CDS 40.0%
TGTCATCCATTTCAATGGCA+GGG - Chr2:68473768-68473787 MsG0280010357.01.T01:intron 40.0%
TTCCAGAACTAAGGTCATTG+TGG - Chr2:68473815-68473834 MsG0280010357.01.T01:intron 40.0%
TTCTGGCATATGCTTGGATT+GGG - Chr2:68473703-68473722 MsG0280010357.01.T01:intron 40.0%
TTCTGTAACTCGTAGTTGAG+AGG + Chr2:68473915-68473934 None:intergenic 40.0%
TTTATCACCTGCTGTGATTG+AGG - Chr2:68472642-68472661 MsG0280010357.01.T01:intron 40.0%
! CCTGGATTGATAGCATTTCA+TGG - Chr2:68473658-68473677 MsG0280010357.01.T01:intron 40.0%
! TATGCTTGGATTGGGATATC+AGG - Chr2:68473711-68473730 MsG0280010357.01.T01:intron 40.0%
! TTTCTGGCATATGCTTGGAT+TGG - Chr2:68473702-68473721 MsG0280010357.01.T01:intron 40.0%
!! AGGCATTGCACCATTTTGAT+TGG - Chr2:68472668-68472687 MsG0280010357.01.T01:intron 40.0%
!! GCCTTTTGTTTGAAAGAGCT+TGG - Chr2:68473377-68473396 MsG0280010357.01.T01:intron 40.0%
!! TATGTCACATTTTGGCCCTA+AGG - Chr2:68470859-68470878 MsG0280010357.01.T01:intron 40.0%
!!! GGTACCTGTTTTAGAAGCAA+TGG - Chr2:68472705-68472724 MsG0280010357.01.T01:intron 40.0%
!!! TGATTGGTTTTCAAAGGGGA+AGG - Chr2:68472684-68472703 MsG0280010357.01.T01:intron 40.0%
!!! TTTTTGATTTGGAGGCTTGG+AGG - Chr2:68473236-68473255 MsG0280010357.01.T01:intron 40.0%
AACTCGTAGTTGAGAGGTCA+TGG + Chr2:68473909-68473928 None:intergenic 45.0%
AATGAGAACCAAGCCTGCAT+GGG + Chr2:68472616-68472635 None:intergenic 45.0%
ATCAGCACATTTGTGACCGT+TGG - Chr2:68472107-68472126 MsG0280010357.01.T01:intron 45.0%
CAATCCCAACGAATGTGCTT+GGG - Chr2:68473198-68473217 MsG0280010357.01.T01:intron 45.0%
CACATGTGTGAAGGTGGATA+AGG - Chr2:68470919-68470938 MsG0280010357.01.T01:intron 45.0%
CATGAACACATGTGTGAAGG+TGG - Chr2:68470913-68470932 MsG0280010357.01.T01:intron 45.0%
CATTGTTGTCTCGGTTGTCA+TGG + Chr2:68474001-68474020 None:intergenic 45.0%
CCCAAATGCTAAGCAAGGTT+AGG - Chr2:68470043-68470062 MsG0280010357.01.T01:three_prime_UTR 45.0%
CCCTTATGGAACAAAGGACT+AGG - Chr2:68472296-68472315 MsG0280010357.01.T01:CDS 45.0%
CGTGTGTGAGAGAGAAAAGA+GGG + Chr2:68470525-68470544 None:intergenic 45.0%
CTGTGGGACATTGACATGAA+TGG - Chr2:68473067-68473086 MsG0280010357.01.T01:intron 45.0%
CTTATTATCCCATGCAGGCT+TGG - Chr2:68472605-68472624 MsG0280010357.01.T01:intron 45.0%
CTTTAAGTCCTTTGCCTGGA+AGG + Chr2:68470348-68470367 None:intergenic 45.0%
GCCAGAAAGGATCTATAACG+TGG + Chr2:68473690-68473709 None:intergenic 45.0%
GCTTGTGACTCTGTCTATGT+AGG + Chr2:68470894-68470913 None:intergenic 45.0%
GGAAAAGCTATGTCTAGCCA+TGG + Chr2:68473799-68473818 None:intergenic 45.0%
GTATCACAATGTCATCGTCG+AGG + Chr2:68473030-68473049 None:intergenic 45.0%
GTCATGGAATGCCTAATCAG+TGG + Chr2:68473985-68474004 None:intergenic 45.0%
GTCCACAATGACCTTAGTTC+TGG + Chr2:68473820-68473839 None:intergenic 45.0%
GTGTCATCCATTTCAATGGC+AGG - Chr2:68473767-68473786 MsG0280010357.01.T01:intron 45.0%
GTTGACGATGTTGAGAATGC+TGG - Chr2:68473745-68473764 MsG0280010357.01.T01:intron 45.0%
TAGGAATTGTCAACAAGGGC+AGG + Chr2:68472466-68472485 None:intergenic 45.0%
TCAAAGTGAAAGTTGCGTCG+AGG - Chr2:68470374-68470393 MsG0280010357.01.T01:three_prime_UTR 45.0%
TCAATCCCAACGAATGTGCT+TGG - Chr2:68473197-68473216 MsG0280010357.01.T01:intron 45.0%
TGGAAAAGTGAATGGAGCAG+TGG - Chr2:68473087-68473106 MsG0280010357.01.T01:intron 45.0%
TGGAGAAAGATCAGAAGGTG+AGG - Chr2:68472725-68472744 MsG0280010357.01.T01:intron 45.0%
TTCATGTCAATGTCCCACAG+AGG + Chr2:68473067-68473086 None:intergenic 45.0%
TTGTGAAACCTTGAGGATGC+AGG + Chr2:68474194-68474213 None:intergenic 45.0%
! AGATAATGTGCTTGCTGCCT+CGG - Chr2:68472507-68472526 MsG0280010357.01.T01:intron 45.0%
! CTAGCTATCCCTTTTACCTC+GGG + Chr2:68472880-68472899 None:intergenic 45.0%
! GATCCTTTCTGGCATATGCT+TGG - Chr2:68473697-68473716 MsG0280010357.01.T01:intron 45.0%
! GCTAGCTATCCCTTTTACCT+CGG + Chr2:68472881-68472900 None:intergenic 45.0%
! GTATGCTGCTTGATGCTACA+TGG + Chr2:68472351-68472370 None:intergenic 45.0%
! TCCCAAACTTCGTCACGTTT+TGG - Chr2:68471629-68471648 MsG0280010357.01.T01:CDS 45.0%
!! GAAAAGAGGGAGAGTACCTA+TGG + Chr2:68470512-68470531 None:intergenic 45.0%
!! GCTGGTGTCATCCATTTCAA+TGG - Chr2:68473763-68473782 MsG0280010357.01.T01:intron 45.0%
!! AATTGAAAAATTTAATAAAA+TGG + Chr2:68471823-68471842 None:intergenic 5.0%
AACGAATGTGCTTGGGCCTA+CGG - Chr2:68473205-68473224 MsG0280010357.01.T01:intron 50.0%
AAGGTGAGGTCGCAGTTTAG+GGG - Chr2:68472739-68472758 MsG0280010357.01.T01:intron 50.0%
ACCTGAGTTTGTGGCAGCTA+GGG - Chr2:68473626-68473645 MsG0280010357.01.T01:intron 50.0%
ACCTGCTGTGATTGAGGTCA+AGG - Chr2:68472648-68472667 MsG0280010357.01.T01:intron 50.0%
ACCTTGCAGTAGCAGGATGA+GGG + Chr2:68471141-68471160 None:intergenic 50.0%
AGAAGGTGAGGTCGCAGTTT+AGG - Chr2:68472737-68472756 MsG0280010357.01.T01:intron 50.0%
AGGCATGTTACTGTCCTTCC+AGG - Chr2:68470331-68470350 MsG0280010357.01.T01:three_prime_UTR 50.0%
ATATCATCACTGGGTTGCGC+AGG - Chr2:68473279-68473298 MsG0280010357.01.T01:intron 50.0%
CAATGAGAACCAAGCCTGCA+TGG + Chr2:68472617-68472636 None:intergenic 50.0%
CATTCGGATACATCTACCCG+AGG - Chr2:68472861-68472880 MsG0280010357.01.T01:intron 50.0%
CCTGACCCAAATGCTAAGCA+AGG - Chr2:68470038-68470057 MsG0280010357.01.T01:three_prime_UTR 50.0%
CCTTGCTTAGCATTTGGGTC+AGG + Chr2:68470041-68470060 None:intergenic 50.0%
CGGGTAGATGTATCCGAATG+TGG + Chr2:68472861-68472880 None:intergenic 50.0%
GAAGGTGAGGTCGCAGTTTA+GGG - Chr2:68472738-68472757 MsG0280010357.01.T01:intron 50.0%
GAGTGATGTTGCAACAACCG+AGG + Chr2:68472527-68472546 None:intergenic 50.0%
GCAGTTTAGGGGAGGTTCAT+CGG - Chr2:68472750-68472769 MsG0280010357.01.T01:intron 50.0%
GCGTGTGTGAGAGAGAAAAG+AGG + Chr2:68470526-68470545 None:intergenic 50.0%
GCTTTGCCCTGCCATTGAAA+TGG + Chr2:68473777-68473796 None:intergenic 50.0%
GGAGCAGTGGAAACATGCAA+TGG - Chr2:68473100-68473119 MsG0280010357.01.T01:intron 50.0%
GGCAGCAAGCACATTATCTG+AGG + Chr2:68472506-68472525 None:intergenic 50.0%
GGTCGTCTACCCAAAATCCT+TGG + Chr2:68471752-68471771 None:intergenic 50.0%
GTTACTGTCCTTCCAGGCAA+AGG - Chr2:68470337-68470356 MsG0280010357.01.T01:three_prime_UTR 50.0%
TAGGCCCAAGCACATTCGTT+GGG + Chr2:68473205-68473224 None:intergenic 50.0%
TGAAGTTGCTGCCATGTGAC+TGG + Chr2:68473427-68473446 None:intergenic 50.0%
TTATGGTAGAAGGGGAGCCT+TGG + Chr2:68473459-68473478 None:intergenic 50.0%
! ACAGCTGTGGATGGCATTGA+TGG - Chr2:68470469-68470488 MsG0280010357.01.T01:CDS 50.0%
! TCGTGTTATTGGTGACCGCA+CGG - Chr2:68472185-68472204 MsG0280010357.01.T01:intron 50.0%
! TGTCCTCTTCTTTTCCCCTG+CGG - Chr2:68472060-68472079 MsG0280010357.01.T01:intron 50.0%
!! GCAGGAACTAGTTCTGCAGA+CGG + Chr2:68472448-68472467 None:intergenic 50.0%
!! TTGATTTGGAGGCTTGGAGG+AGG - Chr2:68473239-68473258 MsG0280010357.01.T01:intron 50.0%
ATCCTGCTACTGCAAGGTCC+AGG - Chr2:68471143-68471162 MsG0280010357.01.T01:CDS 55.0%
CAGCTAGGGACATTACCTCC+TGG - Chr2:68473640-68473659 MsG0280010357.01.T01:intron 55.0%
GACCTGAGTTTGTGGCAGCT+AGG - Chr2:68473625-68473644 MsG0280010357.01.T01:intron 55.0%
GACCTTGCAGTAGCAGGATG+AGG + Chr2:68471142-68471161 None:intergenic 55.0%
GCCTTGACCTCAATCACAGC+AGG + Chr2:68472652-68472671 None:intergenic 55.0%
GTAGGCCCAAGCACATTCGT+TGG + Chr2:68473206-68473225 None:intergenic 55.0%
GTTCTGCAGACGGTAGCTGA+AGG + Chr2:68472438-68472457 None:intergenic 55.0%
TCAATGGCAGGGCAAAGCCA+TGG - Chr2:68473779-68473798 MsG0280010357.01.T01:intron 55.0%
TCCCTAGCTGCCACAAACTC+AGG + Chr2:68473630-68473649 None:intergenic 55.0%
TCCCTCATCCTGCTACTGCA+AGG - Chr2:68471137-68471156 MsG0280010357.01.T01:CDS 55.0%
TGACCGCAGGGGAAAAGAAG+AGG + Chr2:68472066-68472085 None:intergenic 55.0%
TTGCGCGCACACACATAGTC+AGG - Chr2:68470550-68470569 MsG0280010357.01.T01:CDS 55.0%
! CGTCGAGGCGCCTTTCTTAT+AGG - Chr2:68470389-68470408 MsG0280010357.01.T01:three_prime_UTR 55.0%
CACCTGGACCTTGCAGTAGC+AGG + Chr2:68471148-68471167 None:intergenic 60.0%
CGTGCAAACAGTGACCGCAG+GGG + Chr2:68472077-68472096 None:intergenic 60.0%
GCCATGTGACTGGACCTCAC+AGG + Chr2:68473417-68473436 None:intergenic 60.0%
GCCTGTGAGGTCCAGTCACA+TGG - Chr2:68473413-68473432 MsG0280010357.01.T01:intron 60.0%
GCGTGCAAACAGTGACCGCA+GGG + Chr2:68472078-68472097 None:intergenic 60.0%
GTCAGCACATCGGTGACCGT+TGG + Chr2:68472156-68472175 None:intergenic 60.0%
GTGAGGTCGCAGTTTAGGGG+AGG - Chr2:68472742-68472761 MsG0280010357.01.T01:intron 60.0%
TGCGTGCAAACAGTGACCGC+AGG + Chr2:68472079-68472098 None:intergenic 60.0%
! AAGGCGTGCTGCTGCGTTGT+TGG + Chr2:68472419-68472438 None:intergenic 60.0%
TTGCGCGACTCGAGCCTGTG+AGG - Chr2:68473400-68473419 MsG0280010357.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 68470035 68474301 68470035 ID=MsG0280010357.01;Name=MsG0280010357.01
Chr2 mRNA 68470035 68474301 68470035 ID=MsG0280010357.01.T01;Parent=MsG0280010357.01;Name=MsG0280010357.01.T01;_AED=0.32;_eAED=0.32;_QI=242|1|1|1|1|1|6|407|541
Chr2 exon 68470035 68470723 68470035 ID=MsG0280010357.01.T01:exon:5835;Parent=MsG0280010357.01.T01
Chr2 exon 68471036 68471338 68471036 ID=MsG0280010357.01.T01:exon:5834;Parent=MsG0280010357.01.T01
Chr2 exon 68471454 68472044 68471454 ID=MsG0280010357.01.T01:exon:5833;Parent=MsG0280010357.01.T01
Chr2 exon 68472286 68472441 68472286 ID=MsG0280010357.01.T01:exon:5832;Parent=MsG0280010357.01.T01
Chr2 exon 68472555 68472610 68472555 ID=MsG0280010357.01.T01:exon:5831;Parent=MsG0280010357.01.T01
Chr2 exon 68473822 68474301 68473822 ID=MsG0280010357.01.T01:exon:5830;Parent=MsG0280010357.01.T01
Chr2 five_prime_UTR 68474060 68474301 68474060 ID=MsG0280010357.01.T01:five_prime_utr;Parent=MsG0280010357.01.T01
Chr2 CDS 68473822 68474059 68473822 ID=MsG0280010357.01.T01:cds;Parent=MsG0280010357.01.T01
Chr2 CDS 68472555 68472610 68472555 ID=MsG0280010357.01.T01:cds;Parent=MsG0280010357.01.T01
Chr2 CDS 68472286 68472441 68472286 ID=MsG0280010357.01.T01:cds;Parent=MsG0280010357.01.T01
Chr2 CDS 68471454 68472044 68471454 ID=MsG0280010357.01.T01:cds;Parent=MsG0280010357.01.T01
Chr2 CDS 68471036 68471338 68471036 ID=MsG0280010357.01.T01:cds;Parent=MsG0280010357.01.T01
Chr2 CDS 68470442 68470723 68470442 ID=MsG0280010357.01.T01:cds;Parent=MsG0280010357.01.T01
Chr2 three_prime_UTR 68470035 68470441 68470035 ID=MsG0280010357.01.T01:three_prime_utr;Parent=MsG0280010357.01.T01
Gene Sequence

>MsG0280010357.01.T01

ATGTCTATTTTGGATTGGAACAATAAAATGCAGCTGCATATATCTCCAAGTTTGAGGCATGTTACTGTCCTTCCAGGCAAAGGACTTAAAGAGTTTATCAAAGTGAAAGTTGCGTCGAGGCGCCTTTCTTATAGGATGCTCTTCTATTCACTTTTGTTCTTCACTTTTCTTCTGAGATTTGTGTTTGTTTTAACAGCTGTGGATGGCATTGATGGACAAAACAAGTGCTCTACCATAGGTTGTCTGGGAAAAAAATTAGGGCCAAGGATTTTGGGTAGACGACCTGAATCAACTGTCCCAGAAGTGATATACCAAACTTTAGATGAACCAATTGGCAATGATGAACTAAAGGGAAGGTTTGATATTCCACAAACTTTAGAAGAGTTCATGGTTAAAATGAAGGAAGGTGGATATGATGCCAAAACATTTGCAGTTAAACTTAGAGAAATGGTAACCCTTATGGAACAAAGGACTAGGTTGGCCAAAATCCAAGAGTATCTATATCGCCATGTAGCATCAAGCAGCATACCGAAACAACTTCATTGTCTTGACTTGAGATTAGCACATGAGCATACCAACAACGCAGCAGCACGCCTTCAGCTACCGTCTGCAGAACTAGTTCCTGCCCTTGTTGACAATTCCTATTACCATTTTGTTTTAGCCTCAGATAATGTGCTTGCTGCCTCGGTTGTTGCAACATCACTCGTTCGTAACTGTTTACGACCTAATAAGGTTGTTATACACATAATTACAGACCGGAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCATCCTTTATCACCTGCTGTGATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTTCAAAGGGGAAGGTACCTGTTTTAGAAGCAATGGAGAAAGATCAGAAGGTGAGGTCGCAGTTTAGGGGAGGTTCATCGGCTATAGTTGCGAATACATCTGAGAAGCCAAATGTTATTGCAGCAAAACTACAGGCACTTAGTCCGAAGTATAATTCAGTGATGAACCACATTCGGATACATCTACCCGAGTTGTTTCCAAGTCTTAACAAGGTGGTCTTCCTCGACGATGACATTGTGATACAAACTGATCTTACACCTCTGTGGGACATTGACATGAATGGAAAAGTGAATGGAGCAGTGGAAACATGCAATGGAGAAGACAAGTTTGTGATGTCAAAAAGGTTGAAAAGTTATTTGAACTTTTCTCACCCTCTAATATCTAAAAATTTCAATCCCAACGAATGTGCTTGGGCCTACGGCATGAACATTTTTGATTTGGAGGCTTGGAGGAGGACCAATATAAGCAATACATATCATCACTGGGTTGCGCAGAATATTAAATCAGACCTGAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTCATGTCCACGTTATAGATCCTTTCTGGCATATGCTTGGATTGGGATATCAGGAAAATACAAATGTTGACGATGTTGAGAATGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGACATAGCTTTTCCAGAACTAAGGTCATTGTGGACAAAATATGTCGACTTCTCAGATAAGTTCATTAAAAGCTGCAACATTAGAGCATGA
Protein sequence

>MsG0280010357.01.T01

MSILDWNNKMQLHISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGQNKCSTIGCLGKKLGPRILGRRPESTVPEVIYQTLDEPIGNDELKGRFDIPQTLEEFMVKMKEGGYDAKTFAVKLREMVTLMEQRTRLAKIQEYLYRHVASSSIPKQLHCLDLRLAHEHTNNAAARLQLPSAELVPALVDNSYYHFVLASDNVLAASVVATSLVRNCLRPNKVVIHIITDRKTYYPMQAWFSLHPLSPAVIEVKALHHFDWFSKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTSEKPNVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVIQTDLTPLWDIDMNGKVNGAVETCNGEDKFVMSKRLKSYLNFSHPLISKNFNPNECAWAYGMNIFDLEAWRRTNISNTYHHWVAQNIKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTNVDDVENAGVIHFNGRAKPWLDIAFPELRSLWTKYVDFSDKFIKSCNIRA*