Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007878.01.T01 | XP_003594792.1 | 98.742 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007878.01.T01 | Q9LSP9 | 79.791 | 287 | 58 | 0 | 21 | 307 | 33 | 319 | 0 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007878.01.T01 | G7IMU8 | 98.742 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000297.01 | MsG0280007878.01 | 0.819265 | 1.271429e-52 | 9.737064e-50 |
| MsG0180000319.01 | MsG0280007878.01 | 0.833580 | 4.914021e-56 | 5.683131e-53 |
| MsG0180001553.01 | MsG0280007878.01 | 0.836489 | 9.082225e-57 | 1.146253e-53 |
| MsG0280006910.01 | MsG0280007878.01 | 0.855307 | 6.887741e-62 | 1.583403e-58 |
| MsG0280006922.01 | MsG0280007878.01 | 0.819725 | 9.987535e-53 | 7.747615e-50 |
| MsG0280007878.01 | MsG0280008107.01 | 0.942525 | 6.163053e-102 | 7.779081e-97 |
| MsG0280007878.01 | MsG0280009493.01 | 0.808481 | 3.032892e-50 | 1.736114e-47 |
| MsG0280007878.01 | MsG0280010125.01 | 0.907159 | 6.843564e-81 | 1.198651e-76 |
| MsG0280007878.01 | MsG0280010357.01 | 0.803298 | 3.726696e-49 | 1.865961e-46 |
| MsG0280007878.01 | MsG0280010779.01 | 0.801138 | 1.037126e-48 | 4.915844e-46 |
| MsG0280007878.01 | MsG0280010788.01 | 0.864192 | 1.450750e-64 | 4.515760e-61 |
| MsG0280007878.01 | MsG0280010892.01 | 0.812436 | 4.243734e-51 | 2.698304e-48 |
| MsG0280007878.01 | MsG0280010907.01 | 0.805910 | 1.062553e-49 | 5.690132e-47 |
| MsG0280007878.01 | MsG0280011282.01 | 0.800946 | 1.135057e-48 | 5.353953e-46 |
| MsG0280007878.01 | MsG0280011305.01 | 0.806254 | 8.994325e-50 | 4.859193e-47 |
| MsG0280007878.01 | MsG0380014871.01 | 0.829923 | 3.923111e-55 | 4.072406e-52 |
| MsG0280007878.01 | MsG0380015196.01 | 0.831744 | 1.403607e-55 | 1.537195e-52 |
| MsG0280007878.01 | MsG0380017027.01 | 0.816692 | 4.850072e-52 | 3.460514e-49 |
| MsG0280007878.01 | MsG0480022322.01 | 0.836296 | 1.016963e-56 | 1.276339e-53 |
| MsG0280007878.01 | MsG0580024370.01 | 0.844416 | 7.661556e-59 | 1.236066e-55 |
| MsG0280007878.01 | MsG0580025090.01 | 0.829875 | 4.029276e-55 | 4.177246e-52 |
| MsG0280007878.01 | MsG0580025594.01 | 0.819403 | 1.183035e-52 | 9.094773e-50 |
| MsG0280007878.01 | MsG0580026251.01 | 0.844077 | 9.452963e-59 | 1.508973e-55 |
| MsG0280007878.01 | MsG0580029251.01 | 0.834604 | 2.722270e-56 | 3.246774e-53 |
| MsG0280007878.01 | MsG0680030447.01 | 0.826092 | 3.278580e-54 | 3.044491e-51 |
| MsG0280007878.01 | MsG0780038804.01 | 0.824443 | 8.048370e-54 | 7.129636e-51 |
| MsG0280007878.01 | MsG0780039257.01 | 0.847010 | 1.515384e-59 | 2.656530e-56 |
| MsG0280007878.01 | MsG0780040921.01 | 0.860064 | 2.679218e-63 | 7.231360e-60 |
| MsG0280007878.01 | MsG0880041898.01 | 0.805774 | 1.134975e-49 | 6.056865e-47 |
| MsG0280007878.01 | MsG0880042902.01 | 0.826462 | 2.676978e-54 | 2.512215e-51 |
| MsG0280007878.01 | MsG0880046216.01 | 0.812610 | 3.888570e-51 | 2.483624e-48 |
| MsG0280007878.01 | MsG0880047577.01 | 0.858399 | 8.462163e-63 | 2.156832e-59 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007878.01.T01 | MTR_2g034680 | 98.742 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 0.0 | 655 |
| MsG0280007878.01.T01 | MTR_7g021640 | 72.436 | 312 | 83 | 2 | 5 | 316 | 11 | 319 | 1.62e-172 | 481 |
| MsG0280007878.01.T01 | MTR_1g105535 | 69.481 | 308 | 93 | 1 | 8 | 315 | 15 | 321 | 1.11e-166 | 466 |
| MsG0280007878.01.T01 | MTR_8g074350 | 40.476 | 252 | 138 | 6 | 56 | 307 | 80 | 319 | 9.25e-59 | 191 |
| MsG0280007878.01.T01 | MTR_3g118390 | 37.860 | 243 | 140 | 5 | 65 | 307 | 135 | 366 | 3.95e-53 | 179 |
| MsG0280007878.01.T01 | MTR_7g110780 | 39.370 | 254 | 142 | 7 | 56 | 308 | 36 | 278 | 1.47e-51 | 172 |
| MsG0280007878.01.T01 | MTR_8g074330 | 37.860 | 243 | 139 | 5 | 65 | 307 | 89 | 319 | 3.20e-51 | 172 |
| MsG0280007878.01.T01 | MTR_8g074335 | 34.553 | 246 | 136 | 5 | 62 | 307 | 88 | 308 | 7.18e-46 | 158 |
| MsG0280007878.01.T01 | MTR_5g064330 | 60.526 | 76 | 29 | 1 | 45 | 120 | 16 | 90 | 2.84e-25 | 97.8 |
| MsG0280007878.01.T01 | MTR_2g099470 | 30.705 | 241 | 122 | 8 | 62 | 301 | 86 | 282 | 1.85e-23 | 97.8 |
| MsG0280007878.01.T01 | MTR_2g099465 | 29.876 | 241 | 125 | 10 | 62 | 301 | 57 | 254 | 8.67e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007878.01.T01 | AT3G16920 | 79.791 | 287 | 58 | 0 | 21 | 307 | 57 | 343 | 0.0 | 509 |
| MsG0280007878.01.T01 | AT3G16920 | 79.791 | 287 | 58 | 0 | 21 | 307 | 33 | 319 | 0.0 | 507 |
| MsG0280007878.01.T01 | AT1G05850 | 70.724 | 304 | 87 | 2 | 7 | 310 | 12 | 313 | 7.76e-166 | 464 |
| MsG0280007878.01.T01 | AT1G05850 | 70.724 | 304 | 87 | 2 | 7 | 310 | 12 | 313 | 7.76e-166 | 464 |
| MsG0280007878.01.T01 | AT3G12500 | 39.370 | 254 | 139 | 6 | 56 | 307 | 86 | 326 | 3.96e-58 | 190 |
| MsG0280007878.01.T01 | AT1G02360 | 38.272 | 243 | 140 | 6 | 65 | 307 | 39 | 271 | 2.18e-50 | 168 |
| MsG0280007878.01.T01 | AT1G02360 | 38.272 | 243 | 140 | 6 | 65 | 307 | 85 | 317 | 4.99e-50 | 169 |
| MsG0280007878.01.T01 | AT1G02360 | 38.272 | 243 | 140 | 6 | 65 | 307 | 91 | 323 | 5.02e-50 | 169 |
| MsG0280007878.01.T01 | AT4G01700 | 37.037 | 243 | 143 | 6 | 65 | 307 | 47 | 279 | 2.95e-48 | 163 |
| MsG0280007878.01.T01 | AT2G43570 | 30.992 | 242 | 112 | 9 | 65 | 301 | 86 | 277 | 9.07e-25 | 101 |
| MsG0280007878.01.T01 | AT2G43590 | 30.672 | 238 | 114 | 11 | 65 | 301 | 77 | 264 | 2.36e-22 | 94.7 |
| MsG0280007878.01.T01 | AT3G54420 | 29.825 | 228 | 120 | 7 | 62 | 288 | 77 | 265 | 5.68e-22 | 93.6 |
| MsG0280007878.01.T01 | AT2G43610 | 29.960 | 247 | 121 | 10 | 55 | 301 | 87 | 281 | 1.80e-21 | 92.4 |
| MsG0280007878.01.T01 | AT2G43620 | 28.112 | 249 | 127 | 10 | 53 | 301 | 87 | 283 | 4.82e-20 | 88.6 |
| MsG0280007878.01.T01 | AT2G43580 | 28.571 | 224 | 116 | 8 | 65 | 288 | 78 | 257 | 1.53e-18 | 84.0 |
| MsG0280007878.01.T01 | AT2G43600 | 29.167 | 240 | 112 | 13 | 65 | 301 | 89 | 273 | 4.53e-15 | 74.3 |
| MsG0280007878.01.T01 | AT2G43600 | 29.167 | 240 | 112 | 13 | 65 | 301 | 110 | 294 | 5.32e-15 | 74.7 |
| MsG0280007878.01.T01 | AT1G56680 | 30.144 | 209 | 101 | 9 | 81 | 288 | 108 | 272 | 3.48e-14 | 72.0 |
| MsG0280007878.01.T01 | AT1G56680 | 30.144 | 209 | 101 | 9 | 81 | 288 | 131 | 295 | 4.60e-14 | 72.0 |
Find 75 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCACATGCTTCTGGATTT+TGG | 0.066004 | 2:+22195979 | MsG0280007878.01.T01:CDS |
| GGTGGTTATGGGGTGGCTAC+TGG | 0.204419 | 2:+22196904 | MsG0280007878.01.T01:intron |
| CCTCTTGGATTTGGTACTTC+TGG | 0.205257 | 2:+22196041 | MsG0280007878.01.T01:CDS |
| CTTTATTACCTTGATTTATT+AGG | 0.217041 | 2:+22197522 | MsG0280007878.01.T01:CDS |
| TCGAGAACAAATTCTCAAAT+TGG | 0.234101 | 2:-22195941 | None:intergenic |
| AATATTGTTTCAGGTGGTTA+TGG | 0.269978 | 2:+22196892 | MsG0280007878.01.T01:intron |
| GATCCAACGGCACATGCTTC+TGG | 0.270290 | 2:+22195972 | MsG0280007878.01.T01:CDS |
| CTTTATGAGCCTCTTGGATT+TGG | 0.284586 | 2:+22196032 | MsG0280007878.01.T01:CDS |
| TAGCATTCCAAGCAGCATTA+TGG | 0.312742 | 2:+22197304 | MsG0280007878.01.T01:CDS |
| TCCAAAAGGGTACCTGGATT+TGG | 0.330784 | 2:+22197414 | MsG0280007878.01.T01:CDS |
| GTGGTTATGGGGTGGCTACT+GGG | 0.358281 | 2:+22196905 | MsG0280007878.01.T01:CDS |
| TGGTTATGGGGTGGCTACTG+GGG | 0.370044 | 2:+22196906 | MsG0280007878.01.T01:CDS |
| ACCAAATCCAGGTACCCTTT+TGG | 0.377427 | 2:-22197415 | None:intergenic |
| ATTATGATGCTATTATATCT+TGG | 0.384373 | 2:+22197722 | MsG0280007878.01.T01:three_prime_UTR |
| GTGGCGCCATACCGATTTAT+TGG | 0.392331 | 2:+22197043 | MsG0280007878.01.T01:CDS |
| GCTGCACTTTATGAGCCTCT+TGG | 0.400754 | 2:+22196026 | MsG0280007878.01.T01:CDS |
| AAAATGACACATTGTCCAAA+AGG | 0.404045 | 2:+22197400 | MsG0280007878.01.T01:CDS |
| GCACAAGAGAGAATTTCATT+AGG | 0.411754 | 2:-22197567 | None:intergenic |
| TCCAAGCAGCATTATGGAAA+TGG | 0.420085 | 2:+22197310 | MsG0280007878.01.T01:CDS |
| GGTTATGGGGTGGCTACTGG+GGG | 0.424621 | 2:+22196907 | MsG0280007878.01.T01:CDS |
| CTTGGATTTGGTACTTCTGG+TGG | 0.426651 | 2:+22196044 | MsG0280007878.01.T01:CDS |
| ATATTGTTTCAGGTGGTTAT+GGG | 0.429063 | 2:+22196893 | MsG0280007878.01.T01:intron |
| AAAGAGGTTGCTGCTTTCCT+TGG | 0.429315 | 2:+22196083 | MsG0280007878.01.T01:CDS |
| GTTTGGTTGTGAATTAATCT+TGG | 0.429733 | 2:+22197656 | MsG0280007878.01.T01:three_prime_UTR |
| AAATATGAATACCAATAAAT+CGG | 0.435970 | 2:-22197054 | None:intergenic |
| ATTGCAACAATATTAGTGAT+AGG | 0.439273 | 2:+22195786 | MsG0280007878.01.T01:CDS |
| GGTTGTGAATTAATCTTGGT+TGG | 0.452231 | 2:+22197660 | MsG0280007878.01.T01:three_prime_UTR |
| GTTTAATAGATCCACTTTCA+AGG | 0.461556 | 2:-22197250 | None:intergenic |
| AGTCCTGGTGCAGCATACTA+TGG | 0.462195 | 2:+22197018 | MsG0280007878.01.T01:CDS |
| CCATTGATGAAAACAGTAAA+GGG | 0.468879 | 2:+22195831 | MsG0280007878.01.T01:CDS |
| GCCATTGATGAAAACAGTAA+AGG | 0.469304 | 2:+22195830 | MsG0280007878.01.T01:CDS |
| TCATCACAATAGAATTGATC+TGG | 0.469856 | 2:-22196970 | None:intergenic |
| TTGAGAATTTGTTCTCGAAA+CGG | 0.470513 | 2:+22195946 | MsG0280007878.01.T01:CDS |
| TACCTTGATTTATTAGGAGT+TGG | 0.479087 | 2:+22197528 | MsG0280007878.01.T01:CDS |
| TCCATTTCCATAATGCTGCT+TGG | 0.479625 | 2:-22197311 | None:intergenic |
| TTTGTTCTATGTATTCTGGA+TGG | 0.487919 | 2:-22197272 | None:intergenic |
| GCTGCTTTCCTTGGTCATGT+TGG | 0.489882 | 2:+22196092 | MsG0280007878.01.T01:CDS |
| TACCAACTCCTAATAAATCA+AGG | 0.502150 | 2:-22197530 | None:intergenic |
| TTTATTGTGGCACCAAATCC+AGG | 0.511197 | 2:-22197426 | None:intergenic |
| TTGCTTCATTATCAGAACCT+TGG | 0.516239 | 2:-22197476 | None:intergenic |
| TATCACTAATATTGTTGCAA+TGG | 0.516493 | 2:-22195784 | None:intergenic |
| GGTGCAGCATACTATGGCCG+TGG | 0.516578 | 2:+22197024 | MsG0280007878.01.T01:CDS |
| TATTGTTTCAGGTGGTTATG+GGG | 0.516864 | 2:+22196894 | MsG0280007878.01.T01:intron |
| TAGCATAAGCCCCAGGCAAA+GGG | 0.519173 | 2:-22196931 | None:intergenic |
| GTAGCATAAGCCCCAGGCAA+AGG | 0.520031 | 2:-22196932 | None:intergenic |
| ACATTGTCCAAAAGGGTACC+TGG | 0.530667 | 2:+22197408 | MsG0280007878.01.T01:CDS |
| TTAACCTATCCATGTAGTCC+TGG | 0.535696 | 2:+22197003 | MsG0280007878.01.T01:CDS |
| AAATGACACATTGTCCAAAA+GGG | 0.536961 | 2:+22197401 | MsG0280007878.01.T01:CDS |
| ATTAGGAGTTGGTAGAGAAG+AGG | 0.537611 | 2:+22197539 | MsG0280007878.01.T01:CDS |
| TATGCTGCACCAGGACTACA+TGG | 0.539685 | 2:-22197012 | None:intergenic |
| TGTTTCAGGTGGTTATGGGG+TGG | 0.542192 | 2:+22196897 | MsG0280007878.01.T01:intron |
| TGAATACCAATAAATCGGTA+TGG | 0.549661 | 2:-22197049 | None:intergenic |
| GGAAAGAAACTATGTGACAA+AGG | 0.557916 | 2:+22195852 | MsG0280007878.01.T01:CDS |
| ACCATATAAAACATTTATTG+TGG | 0.559699 | 2:-22197439 | None:intergenic |
| CGGCCATAGTATGCTGCACC+AGG | 0.566654 | 2:-22197021 | None:intergenic |
| AGAAACTATGTGACAAAGGG+TGG | 0.568667 | 2:+22195856 | MsG0280007878.01.T01:CDS |
| AATTGGGGAAGCCTTGAAAG+TGG | 0.572731 | 2:+22197239 | MsG0280007878.01.T01:CDS |
| GAAAGAAACTATGTGACAAA+GGG | 0.573194 | 2:+22195853 | MsG0280007878.01.T01:CDS |
| GGTACTTCTGGTGGAAAGCA+TGG | 0.578987 | 2:+22196053 | MsG0280007878.01.T01:CDS |
| CTTGTTGTAGCATAAGCCCC+AGG | 0.584068 | 2:-22196938 | None:intergenic |
| AATCCAGAAGCATGTGCCGT+TGG | 0.586749 | 2:-22195975 | None:intergenic |
| GGTGATCAAGTTTGTGACCA+AGG | 0.587507 | 2:+22197459 | MsG0280007878.01.T01:CDS |
| GGAGTTGGTAGAGAAGAGGC+AGG | 0.599089 | 2:+22197543 | MsG0280007878.01.T01:CDS |
| AAAGCATGGTGGTCAGAAAG+AGG | 0.601879 | 2:+22196067 | MsG0280007878.01.T01:CDS |
| GAAACTATGTGACAAAGGGT+GGG | 0.610521 | 2:+22195857 | MsG0280007878.01.T01:CDS |
| GAAGAAGAAAGTGAGCCAGT+AGG | 0.622743 | 2:-22197609 | None:intergenic |
| AAGGGTGGGAATGTAAAGGT+TGG | 0.625286 | 2:+22195871 | MsG0280007878.01.T01:CDS |
| AATAAATCGGTATGGCGCCA+CGG | 0.629344 | 2:-22197041 | None:intergenic |
| CTCGAAACGGAATGATCCAA+CGG | 0.641016 | 2:+22195959 | MsG0280007878.01.T01:CDS |
| CTGGGGCTTATGCTACAACA+AGG | 0.655521 | 2:+22196939 | MsG0280007878.01.T01:CDS |
| GACAAAGGGTGGGAATGTAA+AGG | 0.668253 | 2:+22195867 | MsG0280007878.01.T01:CDS |
| TCTTGCTTCCAACATGACCA+AGG | 0.673449 | 2:-22196100 | None:intergenic |
| TGCACCAGGACTACATGGAT+AGG | 0.675927 | 2:-22197007 | None:intergenic |
| CCAGAAGTACCAAATCCAAG+AGG | 0.703394 | 2:-22196041 | None:intergenic |
| ACTTCTGGTGGAAAGCATGG+TGG | 0.730500 | 2:+22196056 | MsG0280007878.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGATTTGAATATATTTT+TGG | + | Chr2:22197763-22197782 | MsG0280007878.01.T01:three_prime_UTR | 10.0% |
| !! | AAATATGAATACCAATAAAT+CGG | - | Chr2:22197057-22197076 | None:intergenic | 15.0% |
| !!! | TTTAAGATGATAAAATTGTA+AGG | + | Chr2:22196862-22196881 | MsG0280007878.01.T01:intron | 15.0% |
| !! | AAAAACATAAGATCAAGAAA+AGG | - | Chr2:22196217-22196236 | None:intergenic | 20.0% |
| !! | AACTCATGGTAAAAAATTAT+AGG | - | Chr2:22196621-22196640 | None:intergenic | 20.0% |
| !! | AAGAAAAAATGAATTCCAAA+TGG | + | Chr2:22195745-22195764 | MsG0280007878.01.T01:exon | 20.0% |
| !! | AATTACAACTATGGAAAAAT+TGG | + | Chr2:22197222-22197241 | MsG0280007878.01.T01:CDS | 20.0% |
| !! | ACCATATAAAACATTTATTG+TGG | - | Chr2:22197442-22197461 | None:intergenic | 20.0% |
| !! | ACTCATGGTAAAAAATTATA+GGG | - | Chr2:22196620-22196639 | None:intergenic | 20.0% |
| !! | ATAAAATGATCAATTCATGT+GGG | + | Chr2:22196180-22196199 | MsG0280007878.01.T01:intron | 20.0% |
| !! | ATACAGTAAAATTTCAAACT+TGG | + | Chr2:22196361-22196380 | MsG0280007878.01.T01:intron | 20.0% |
| !! | ATTACAACTATGGAAAAATT+GGG | + | Chr2:22197223-22197242 | MsG0280007878.01.T01:CDS | 20.0% |
| !! | ATTATGATGCTATTATATCT+TGG | + | Chr2:22197722-22197741 | MsG0280007878.01.T01:three_prime_UTR | 20.0% |
| !! | CTTTATTACCTTGATTTATT+AGG | + | Chr2:22197522-22197541 | MsG0280007878.01.T01:CDS | 20.0% |
| !! | TAATAGAAAAAATGTCCATT+TGG | - | Chr2:22195763-22195782 | None:intergenic | 20.0% |
| !! | TATAAAATGATCAATTCATG+TGG | + | Chr2:22196179-22196198 | MsG0280007878.01.T01:intron | 20.0% |
| !!! | ACCAAAAATTTTAAGTTGTT+TGG | - | Chr2:22196774-22196793 | None:intergenic | 20.0% |
| !!! | ACCAAACAACTTAAAATTTT+TGG | + | Chr2:22196770-22196789 | MsG0280007878.01.T01:intron | 20.0% |
| !!! | TGAAGATATTTTTACTTGTT+TGG | + | Chr2:22197639-22197658 | MsG0280007878.01.T01:exon | 20.0% |
| !!! | TTATGTTTTTTGGTTCATTA+TGG | + | Chr2:22196227-22196246 | MsG0280007878.01.T01:intron | 20.0% |
| !!! | TTTCTTGATCTTATGTTTTT+TGG | + | Chr2:22196217-22196236 | MsG0280007878.01.T01:intron | 20.0% |
| ! | AAAAACAGGAATTACAACTA+TGG | + | Chr2:22197213-22197232 | MsG0280007878.01.T01:intron | 25.0% |
| ! | ATTGCAACAATATTAGTGAT+AGG | + | Chr2:22195786-22195805 | MsG0280007878.01.T01:CDS | 25.0% |
| ! | TAAAATGATCAATTCATGTG+GGG | + | Chr2:22196181-22196200 | MsG0280007878.01.T01:intron | 25.0% |
| ! | TATCACTAATATTGTTGCAA+TGG | - | Chr2:22195787-22195806 | None:intergenic | 25.0% |
| ! | TTACAACTATGGAAAAATTG+GGG | + | Chr2:22197224-22197243 | MsG0280007878.01.T01:CDS | 25.0% |
| !! | CATTTGATGATTCATAGATT+TGG | + | Chr2:22196332-22196351 | MsG0280007878.01.T01:intron | 25.0% |
| !! | GCCACAATAAATGTTTTATA+TGG | + | Chr2:22197438-22197457 | MsG0280007878.01.T01:CDS | 25.0% |
| !! | TATATAGTAGCTAACTTGTA+TGG | + | Chr2:22196714-22196733 | MsG0280007878.01.T01:intron | 25.0% |
| !!! | ATGATGTTTTTGTTGGAAAT+TGG | + | Chr2:22197367-22197386 | MsG0280007878.01.T01:CDS | 25.0% |
| !!! | GTTGTAATTCCTGTTTTTAA+AGG | - | Chr2:22197211-22197230 | None:intergenic | 25.0% |
| !!! | TTTTTTACCATGAGTTGTAT+AGG | + | Chr2:22196625-22196644 | MsG0280007878.01.T01:intron | 25.0% |
| AAAATGACACATTGTCCAAA+AGG | + | Chr2:22197400-22197419 | MsG0280007878.01.T01:CDS | 30.0% | |
| AAAATGATCAATTCATGTGG+GGG | + | Chr2:22196182-22196201 | MsG0280007878.01.T01:intron | 30.0% | |
| AAACAAGTAATGAGTCTCAA+TGG | - | Chr2:22197130-22197149 | None:intergenic | 30.0% | |
| AAATGACACATTGTCCAAAA+GGG | + | Chr2:22197401-22197420 | MsG0280007878.01.T01:CDS | 30.0% | |
| AATGAATTGTGACTTACAAG+AGG | - | Chr2:22196126-22196145 | None:intergenic | 30.0% | |
| AGATGTTGTTAGATTTAGAG+TGG | + | Chr2:22196827-22196846 | MsG0280007878.01.T01:intron | 30.0% | |
| CCATTGATGAAAACAGTAAA+GGG | + | Chr2:22195831-22195850 | MsG0280007878.01.T01:CDS | 30.0% | |
| GAAAGAAACTATGTGACAAA+GGG | + | Chr2:22195853-22195872 | MsG0280007878.01.T01:CDS | 30.0% | |
| GGTTCTTGAAATATTGTTTC+AGG | + | Chr2:22196883-22196902 | MsG0280007878.01.T01:intron | 30.0% | |
| GTCAAATATCATGCAATTGA+GGG | - | Chr2:22196253-22196272 | None:intergenic | 30.0% | |
| GTTTAATAGATCCACTTTCA+AGG | - | Chr2:22197253-22197272 | None:intergenic | 30.0% | |
| GTTTGGTTGTGAATTAATCT+TGG | + | Chr2:22197656-22197675 | MsG0280007878.01.T01:three_prime_UTR | 30.0% | |
| TACCAACTCCTAATAAATCA+AGG | - | Chr2:22197533-22197552 | None:intergenic | 30.0% | |
| TACCTTGATTTATTAGGAGT+TGG | + | Chr2:22197528-22197547 | MsG0280007878.01.T01:CDS | 30.0% | |
| TCATCACAATAGAATTGATC+TGG | - | Chr2:22196973-22196992 | None:intergenic | 30.0% | |
| TCGAGAACAAATTCTCAAAT+TGG | - | Chr2:22195944-22195963 | None:intergenic | 30.0% | |
| TCTTGAAATATTGTTTCAGG+TGG | + | Chr2:22196886-22196905 | MsG0280007878.01.T01:intron | 30.0% | |
| TGAATACCAATAAATCGGTA+TGG | - | Chr2:22197052-22197071 | None:intergenic | 30.0% | |
| TGTCAAATATCATGCAATTG+AGG | - | Chr2:22196254-22196273 | None:intergenic | 30.0% | |
| TTTCCAACAAAAACATCATG+TGG | - | Chr2:22197366-22197385 | None:intergenic | 30.0% | |
| TTTGTTCTATGTATTCTGGA+TGG | - | Chr2:22197275-22197294 | None:intergenic | 30.0% | |
| ! | AATATTGTTTCAGGTGGTTA+TGG | + | Chr2:22196892-22196911 | MsG0280007878.01.T01:intron | 30.0% |
| ! | ATATTGTTTCAGGTGGTTAT+GGG | + | Chr2:22196893-22196912 | MsG0280007878.01.T01:intron | 30.0% |
| ! | GCATTTTGTTCTATGTATTC+TGG | - | Chr2:22197279-22197298 | None:intergenic | 30.0% |
| ! | TTCTTGATGCCTTTAAAAAC+AGG | + | Chr2:22197199-22197218 | MsG0280007878.01.T01:intron | 30.0% |
| ! | TTGAGAATTTGTTCTCGAAA+CGG | + | Chr2:22195946-22195965 | MsG0280007878.01.T01:CDS | 30.0% |
| !!! | GACAATGTGTCATTTTTTGT+TGG | - | Chr2:22197396-22197415 | None:intergenic | 30.0% |
| !!! | GTTGAGATAAGGATTTTTTG+TGG | - | Chr2:22196481-22196500 | None:intergenic | 30.0% |
| ACAAAAACATCATGTGGTGA+AGG | - | Chr2:22197360-22197379 | None:intergenic | 35.0% | |
| ATCAGGACATCGATAATCAT+TGG | - | Chr2:22196435-22196454 | None:intergenic | 35.0% | |
| CTGTTAGCGCTTATACATAT+AGG | + | Chr2:22196795-22196814 | MsG0280007878.01.T01:intron | 35.0% | |
| GCACAAGAGAGAATTTCATT+AGG | - | Chr2:22197570-22197589 | None:intergenic | 35.0% | |
| GCATCAAGAAAGACAACATA+AGG | - | Chr2:22197189-22197208 | None:intergenic | 35.0% | |
| GCCATTGATGAAAACAGTAA+AGG | + | Chr2:22195830-22195849 | MsG0280007878.01.T01:CDS | 35.0% | |
| GGAAAGAAACTATGTGACAA+AGG | + | Chr2:22195852-22195871 | MsG0280007878.01.T01:CDS | 35.0% | |
| GGTTGTGAATTAATCTTGGT+TGG | + | Chr2:22197660-22197679 | MsG0280007878.01.T01:three_prime_UTR | 35.0% | |
| TATGTGTGTGTGTTGAGATA+AGG | - | Chr2:22196492-22196511 | None:intergenic | 35.0% | |
| TTGCTTCATTATCAGAACCT+TGG | - | Chr2:22197479-22197498 | None:intergenic | 35.0% | |
| TTTCAGTCATTCACGTAATC+AGG | - | Chr2:22196452-22196471 | None:intergenic | 35.0% | |
| ! | CCCTTTACTGTTTTCATCAA+TGG | - | Chr2:22195834-22195853 | None:intergenic | 35.0% |
| ! | GTTGTTAGATTTAGAGTGGT+TGG | + | Chr2:22196831-22196850 | MsG0280007878.01.T01:intron | 35.0% |
| ! | GTTTTGTCCTATACAACTCA+TGG | - | Chr2:22196635-22196654 | None:intergenic | 35.0% |
| ! | TATTGTTTCAGGTGGTTATG+GGG | + | Chr2:22196894-22196913 | MsG0280007878.01.T01:intron | 35.0% |
| !! | TCACCACATGATGTTTTTGT+TGG | + | Chr2:22197360-22197379 | MsG0280007878.01.T01:CDS | 35.0% |
| AGAAACTATGTGACAAAGGG+TGG | + | Chr2:22195856-22195875 | MsG0280007878.01.T01:CDS | 40.0% | |
| CTTTATGAGCCTCTTGGATT+TGG | + | Chr2:22196032-22196051 | MsG0280007878.01.T01:CDS | 40.0% | |
| GAAACTATGTGACAAAGGGT+GGG | + | Chr2:22195857-22195876 | MsG0280007878.01.T01:CDS | 40.0% | |
| TAATGAGTCTCAATGGAACG+TGG | - | Chr2:22197123-22197142 | None:intergenic | 40.0% | |
| TAGCATTCCAAGCAGCATTA+TGG | + | Chr2:22197304-22197323 | MsG0280007878.01.T01:CDS | 40.0% | |
| TCCAAGCAGCATTATGGAAA+TGG | + | Chr2:22197310-22197329 | MsG0280007878.01.T01:CDS | 40.0% | |
| TCCATTTCCATAATGCTGCT+TGG | - | Chr2:22197314-22197333 | None:intergenic | 40.0% | |
| TTAACCTATCCATGTAGTCC+TGG | + | Chr2:22197003-22197022 | MsG0280007878.01.T01:CDS | 40.0% | |
| TTTATTGTGGCACCAAATCC+AGG | - | Chr2:22197429-22197448 | None:intergenic | 40.0% | |
| !! | ACACACTAAGTGCTGAAAAG+TGG | + | Chr2:22196553-22196572 | MsG0280007878.01.T01:intron | 40.0% |
| !! | ATTAGGAGTTGGTAGAGAAG+AGG | + | Chr2:22197539-22197558 | MsG0280007878.01.T01:CDS | 40.0% |
| !! | GAAGGTATGTGTTTTTCTGG+TGG | - | Chr2:22197342-22197361 | None:intergenic | 40.0% |
| !! | GGTGAAGGTATGTGTTTTTC+TGG | - | Chr2:22197345-22197364 | None:intergenic | 40.0% |
| !!! | CAAGCTGCTTTTAAACCTAC+TGG | + | Chr2:22197594-22197613 | MsG0280007878.01.T01:CDS | 40.0% |
| AAAGCATGGTGGTCAGAAAG+AGG | + | Chr2:22196067-22196086 | MsG0280007878.01.T01:CDS | 45.0% | |
| AAGGGTGGGAATGTAAAGGT+TGG | + | Chr2:22195871-22195890 | MsG0280007878.01.T01:CDS | 45.0% | |
| AATAAATCGGTATGGCGCCA+CGG | - | Chr2:22197044-22197063 | None:intergenic | 45.0% | |
| AATTGGGGAAGCCTTGAAAG+TGG | + | Chr2:22197239-22197258 | MsG0280007878.01.T01:CDS | 45.0% | |
| CGTCGCTTCACTCTTTACAA+TGG | - | Chr2:22196529-22196548 | None:intergenic | 45.0% | |
| CTCGAAACGGAATGATCCAA+CGG | + | Chr2:22195959-22195978 | MsG0280007878.01.T01:CDS | 45.0% | |
| GAAGAAGAAAGTGAGCCAGT+AGG | - | Chr2:22197612-22197631 | None:intergenic | 45.0% | |
| GACAAAGGGTGGGAATGTAA+AGG | + | Chr2:22195867-22195886 | MsG0280007878.01.T01:CDS | 45.0% | |
| GGTGATCAAGTTTGTGACCA+AGG | + | Chr2:22197459-22197478 | MsG0280007878.01.T01:CDS | 45.0% | |
| TCTTGCTTCCAACATGACCA+AGG | - | Chr2:22196103-22196122 | None:intergenic | 45.0% | |
| ! | ACCAAATCCAGGTACCCTTT+TGG | - | Chr2:22197418-22197437 | None:intergenic | 45.0% |
| ! | CCTCTTGGATTTGGTACTTC+TGG | + | Chr2:22196041-22196060 | MsG0280007878.01.T01:CDS | 45.0% |
| ! | CTTGGATTTGGTACTTCTGG+TGG | + | Chr2:22196044-22196063 | MsG0280007878.01.T01:CDS | 45.0% |
| ! | GGCACATGCTTCTGGATTTT+GGG | + | Chr2:22195980-22195999 | MsG0280007878.01.T01:CDS | 45.0% |
| !! | AAAGAGGTTGCTGCTTTCCT+TGG | + | Chr2:22196083-22196102 | MsG0280007878.01.T01:CDS | 45.0% |
| !! | ACATTGTCCAAAAGGGTACC+TGG | + | Chr2:22197408-22197427 | MsG0280007878.01.T01:CDS | 45.0% |
| !! | CCAGAAGTACCAAATCCAAG+AGG | - | Chr2:22196044-22196063 | None:intergenic | 45.0% |
| !! | TCCAAAAGGGTACCTGGATT+TGG | + | Chr2:22197414-22197433 | MsG0280007878.01.T01:CDS | 45.0% |
| AGTCCTGGTGCAGCATACTA+TGG | + | Chr2:22197018-22197037 | MsG0280007878.01.T01:CDS | 50.0% | |
| CTGGGGCTTATGCTACAACA+AGG | + | Chr2:22196939-22196958 | MsG0280007878.01.T01:CDS | 50.0% | |
| GCTGCACTTTATGAGCCTCT+TGG | + | Chr2:22196026-22196045 | MsG0280007878.01.T01:CDS | 50.0% | |
| GGTACTTCTGGTGGAAAGCA+TGG | + | Chr2:22196053-22196072 | MsG0280007878.01.T01:CDS | 50.0% | |
| TAGCATAAGCCCCAGGCAAA+GGG | - | Chr2:22196934-22196953 | None:intergenic | 50.0% | |
| TATGCTGCACCAGGACTACA+TGG | - | Chr2:22197015-22197034 | None:intergenic | 50.0% | |
| TGCACCAGGACTACATGGAT+AGG | - | Chr2:22197010-22197029 | None:intergenic | 50.0% | |
| ! | AATCCAGAAGCATGTGCCGT+TGG | - | Chr2:22195978-22195997 | None:intergenic | 50.0% |
| ! | ACTTCTGGTGGAAAGCATGG+TGG | + | Chr2:22196056-22196075 | MsG0280007878.01.T01:CDS | 50.0% |
| ! | CGGCACATGCTTCTGGATTT+TGG | + | Chr2:22195979-22195998 | MsG0280007878.01.T01:CDS | 50.0% |
| ! | CTTGTTGTAGCATAAGCCCC+AGG | - | Chr2:22196941-22196960 | None:intergenic | 50.0% |
| ! | GCTGCTTTCCTTGGTCATGT+TGG | + | Chr2:22196092-22196111 | MsG0280007878.01.T01:CDS | 50.0% |
| ! | TGTTTCAGGTGGTTATGGGG+TGG | + | Chr2:22196897-22196916 | MsG0280007878.01.T01:intron | 50.0% |
| !! | GTGGCGCCATACCGATTTAT+TGG | + | Chr2:22197043-22197062 | MsG0280007878.01.T01:CDS | 50.0% |
| GATCCAACGGCACATGCTTC+TGG | + | Chr2:22195972-22195991 | MsG0280007878.01.T01:CDS | 55.0% | |
| GTAGCATAAGCCCCAGGCAA+AGG | - | Chr2:22196935-22196954 | None:intergenic | 55.0% | |
| GTGGTTATGGGGTGGCTACT+GGG | + | Chr2:22196905-22196924 | MsG0280007878.01.T01:CDS | 55.0% | |
| TGGTTATGGGGTGGCTACTG+GGG | + | Chr2:22196906-22196925 | MsG0280007878.01.T01:CDS | 55.0% | |
| !! | GGAGTTGGTAGAGAAGAGGC+AGG | + | Chr2:22197543-22197562 | MsG0280007878.01.T01:CDS | 55.0% |
| CGGCCATAGTATGCTGCACC+AGG | - | Chr2:22197024-22197043 | None:intergenic | 60.0% | |
| GGTGCAGCATACTATGGCCG+TGG | + | Chr2:22197024-22197043 | MsG0280007878.01.T01:CDS | 60.0% | |
| GGTGGTTATGGGGTGGCTAC+TGG | + | Chr2:22196904-22196923 | MsG0280007878.01.T01:intron | 60.0% | |
| GGTTATGGGGTGGCTACTGG+GGG | + | Chr2:22196907-22196926 | MsG0280007878.01.T01:CDS | 60.0% | |
| TACTGGGGGACCCTTTGCCT+GGG | + | Chr2:22196921-22196940 | MsG0280007878.01.T01:CDS | 60.0% | |
| ACTGGGGGACCCTTTGCCTG+GGG | + | Chr2:22196922-22196941 | MsG0280007878.01.T01:CDS | 65.0% | |
| CTACTGGGGGACCCTTTGCC+TGG | + | Chr2:22196920-22196939 | MsG0280007878.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 22195721 | 22197820 | 22195721 | ID=MsG0280007878.01;Name=MsG0280007878.01 |
| Chr2 | mRNA | 22195721 | 22197820 | 22195721 | ID=MsG0280007878.01.T01;Parent=MsG0280007878.01;Name=MsG0280007878.01.T01;_AED=0.35;_eAED=0.35;_QI=32|1|1|1|1|1|3|179|318 |
| Chr2 | exon | 22195721 | 22196128 | 22195721 | ID=MsG0280007878.01.T01:exon:2884;Parent=MsG0280007878.01.T01 |
| Chr2 | exon | 22196905 | 22197064 | 22196905 | ID=MsG0280007878.01.T01:exon:2885;Parent=MsG0280007878.01.T01 |
| Chr2 | exon | 22197221 | 22197820 | 22197221 | ID=MsG0280007878.01.T01:exon:2886;Parent=MsG0280007878.01.T01 |
| Chr2 | five_prime_UTR | 22195721 | 22195752 | 22195721 | ID=MsG0280007878.01.T01:five_prime_utr;Parent=MsG0280007878.01.T01 |
| Chr2 | CDS | 22195753 | 22196128 | 22195753 | ID=MsG0280007878.01.T01:cds;Parent=MsG0280007878.01.T01 |
| Chr2 | CDS | 22196905 | 22197064 | 22196905 | ID=MsG0280007878.01.T01:cds;Parent=MsG0280007878.01.T01 |
| Chr2 | CDS | 22197221 | 22197641 | 22197221 | ID=MsG0280007878.01.T01:cds;Parent=MsG0280007878.01.T01 |
| Chr2 | three_prime_UTR | 22197642 | 22197820 | 22197642 | ID=MsG0280007878.01.T01:three_prime_utr;Parent=MsG0280007878.01.T01 |
| Gene Sequence |
| Protein sequence |
