AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010520.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010520.01.T01 MTR_2g086530 97.849 372 7 1 1 371 1 372 0.0 732
MsG0280010520.01.T01 MTR_2g086530 94.262 366 20 1 22 386 1 366 0.0 697
MsG0280010520.01.T01 MTR_4g052970 68.272 353 104 2 16 366 16 362 1.28e-177 501
MsG0280010520.01.T01 MTR_1g077990 61.755 319 119 2 29 345 31 348 7.96e-143 414
MsG0280010520.01.T01 MTR_4g084480 50.000 338 167 1 10 345 6 343 4.03e-124 365
MsG0280010520.01.T01 MTR_4g084480 50.000 338 167 1 10 345 13 350 5.43e-124 365
MsG0280010520.01.T01 MTR_4g084480 50.000 338 167 1 10 345 13 350 6.13e-124 365
MsG0280010520.01.T01 MTR_2g019345 48.980 343 170 3 5 345 2 341 1.45e-116 347
MsG0280010520.01.T01 MTR_4g010200 45.326 353 183 4 5 350 8 357 4.76e-114 340
MsG0280010520.01.T01 MTR_4g114850 48.758 322 158 2 29 345 26 345 3.91e-108 324
MsG0280010520.01.T01 MTR_4g114850 46.439 351 176 4 29 371 26 372 6.57e-108 323
MsG0280010520.01.T01 MTR_4g114850 48.758 322 158 2 29 345 26 345 6.76e-108 324
MsG0280010520.01.T01 MTR_4g069940 42.655 354 199 3 2 352 3 355 2.19e-94 292
MsG0280010520.01.T01 MTR_3g080410 43.768 345 182 5 20 353 17 360 1.36e-93 286
MsG0280010520.01.T01 MTR_1g022160 43.210 324 180 3 29 348 24 347 2.24e-93 288
MsG0280010520.01.T01 MTR_5g085580 45.092 326 174 3 24 345 20 344 4.10e-93 289
MsG0280010520.01.T01 MTR_1g022160 43.210 324 180 3 29 348 24 347 9.10e-93 288
MsG0280010520.01.T01 MTR_1g022160 43.210 324 180 3 29 348 24 347 1.24e-92 288
MsG0280010520.01.T01 MTR_1g022160 43.210 324 180 3 29 348 24 347 2.75e-92 287
MsG0280010520.01.T01 MTR_3g116510 42.407 349 193 4 6 351 10 353 7.77e-92 285
MsG0280010520.01.T01 MTR_1g056640 44.237 321 174 4 29 345 38 357 1.90e-91 285
MsG0280010520.01.T01 MTR_6g088885 41.667 348 196 3 6 350 7 350 1.25e-88 278
MsG0280010520.01.T01 MTR_1g007810 42.433 337 182 6 10 342 1 329 3.31e-86 268
MsG0280010520.01.T01 MTR_7g053500 40.719 334 180 7 30 351 27 354 1.49e-84 266
MsG0280010520.01.T01 MTR_7g026340 40.625 320 180 7 30 345 24 337 5.10e-79 252
MsG0280010520.01.T01 MTR_4g083500 41.617 334 188 6 28 357 43 373 9.33e-78 251
MsG0280010520.01.T01 MTR_8g012400 36.975 357 214 7 10 356 7 362 5.03e-77 247
MsG0280010520.01.T01 MTR_8g102340 41.401 314 152 4 30 343 29 310 9.21e-77 247
MsG0280010520.01.T01 MTR_4g088155 32.895 456 249 12 11 433 8 439 2.59e-76 245
MsG0280010520.01.T01 MTR_4g076490 36.288 361 200 6 2 344 54 402 4.81e-75 241
MsG0280010520.01.T01 MTR_8g085720 35.484 372 227 5 1 363 1 368 3.53e-74 241
MsG0280010520.01.T01 MTR_4g132280 38.226 327 195 3 23 343 39 364 1.47e-71 234
MsG0280010520.01.T01 MTR_3g083580 36.308 325 199 4 26 343 23 346 3.91e-70 230
MsG0280010520.01.T01 MTR_4g076470 37.278 338 188 8 12 341 3 324 1.22e-68 221
MsG0280010520.01.T01 MTR_4g076430 36.095 338 198 8 10 343 3 326 3.77e-67 217
MsG0280010520.01.T01 MTR_1g052430 38.679 318 181 8 23 336 28 335 5.60e-67 219
MsG0280010520.01.T01 MTR_7g053500 37.993 279 163 5 77 351 5 277 1.79e-66 217
MsG0280010520.01.T01 MTR_4g076440 34.718 337 204 7 10 343 3 326 2.01e-65 213
MsG0280010520.01.T01 MTR_4g076570 37.304 319 190 6 29 344 22 333 2.91e-65 213
MsG0280010520.01.T01 MTR_3g065460 36.628 344 209 5 8 345 5 345 5.73e-65 216
MsG0280010520.01.T01 MTR_2g034480 36.023 347 200 10 30 370 28 358 1.16e-64 212
MsG0280010520.01.T01 MTR_1g031900 35.380 342 214 4 10 345 5 345 1.40e-64 216
MsG0280010520.01.T01 MTR_4g076255 36.709 316 185 6 30 343 26 328 1.58e-64 211
MsG0280010520.01.T01 MTR_1g031900 35.380 342 214 4 10 345 5 345 2.26e-64 215
MsG0280010520.01.T01 MTR_3g116510 45.205 219 120 0 133 351 1 219 3.14e-62 204
MsG0280010520.01.T01 MTR_4g076500 36.538 312 186 6 30 338 79 381 9.46e-62 205
MsG0280010520.01.T01 MTR_5g078200 35.000 340 214 3 12 345 6 344 1.73e-61 211
MsG0280010520.01.T01 MTR_8g012400 38.202 267 160 4 94 356 17 282 5.70e-61 203
MsG0280010520.01.T01 MTR_7g081350 33.333 342 212 9 8 343 4 335 4.25e-60 199
MsG0280010520.01.T01 MTR_2g034470 35.168 327 194 10 30 349 31 346 2.58e-59 198
MsG0280010520.01.T01 MTR_5g078200 36.218 312 192 3 40 345 1 311 3.90e-59 204
MsG0280010520.01.T01 MTR_2g034440 35.144 313 187 9 30 336 23 325 1.66e-57 192
MsG0280010520.01.T01 MTR_2g034470 34.891 321 191 10 36 349 2 311 6.77e-57 191
MsG0280010520.01.T01 MTR_7g081370 31.778 343 204 10 8 343 4 323 5.78e-53 180
MsG0280010520.01.T01 MTR_5g081720 33.981 309 181 11 45 342 53 349 9.47e-47 165
MsG0280010520.01.T01 MTR_4g124440 32.303 356 210 16 7 345 6 347 3.21e-45 164
MsG0280010520.01.T01 MTR_8g092070 30.675 326 201 13 30 341 35 349 7.50e-45 164
MsG0280010520.01.T01 MTR_6g032820 29.863 365 224 13 5 351 4 354 9.07e-45 161
MsG0280010520.01.T01 MTR_4g112025 31.638 354 217 12 8 346 10 353 1.07e-44 163
MsG0280010520.01.T01 MTR_7g085390 32.635 334 203 14 29 349 26 350 1.17e-44 162
MsG0280010520.01.T01 MTR_1g010120 31.844 358 212 16 7 349 9 349 2.11e-44 161
MsG0280010520.01.T01 MTR_2g027560 31.343 335 205 13 30 348 29 354 9.10e-43 157
MsG0280010520.01.T01 MTR_1g053320 29.213 356 228 12 11 353 16 360 1.49e-39 148
MsG0280010520.01.T01 MTR_3g095050 31.498 327 197 12 29 341 34 347 1.85e-39 148
MsG0280010520.01.T01 MTR_3g108600 30.793 328 187 13 30 345 32 331 8.17e-39 146
MsG0280010520.01.T01 MTR_3g031770 29.042 334 202 13 30 345 28 344 1.70e-30 123
MsG0280010520.01.T01 MTR_4g134280 32.377 244 147 10 114 348 3 237 1.89e-28 115
MsG0280010520.01.T01 MTR_4g036775 42.727 110 50 5 243 351 80 177 2.92e-18 83.6
MsG0280010520.01.T01 MTR_4g036680 42.727 110 50 5 243 351 80 177 3.34e-18 83.6
MsG0280010520.01.T01 MTR_6g078180 50.000 50 25 0 90 139 5 54 8.79e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010520.01.T01 AT2G27500 60.428 374 134 4 26 396 26 388 3.23e-164 468
MsG0280010520.01.T01 AT2G27500 64.912 342 111 3 26 364 26 361 9.81e-163 463
MsG0280010520.01.T01 AT1G32860 54.023 348 156 2 1 344 1 348 6.07e-134 392
MsG0280010520.01.T01 AT2G27500 58.255 321 120 4 79 396 1 310 7.41e-134 387
MsG0280010520.01.T01 AT5G42100 54.969 322 140 3 30 346 28 349 1.60e-123 365
MsG0280010520.01.T01 AT5G42100 54.969 322 140 3 30 346 28 349 1.81e-123 365
MsG0280010520.01.T01 AT1G30080 47.875 353 173 3 3 344 1 353 7.39e-115 342
MsG0280010520.01.T01 AT1G30080 47.875 353 173 3 3 344 1 353 1.11e-114 342
MsG0280010520.01.T01 AT3G15800 50.311 322 154 3 29 345 43 363 2.22e-113 338
MsG0280010520.01.T01 AT4G18340 45.349 344 185 2 4 345 10 352 5.96e-111 332
MsG0280010520.01.T01 AT4G18340 45.349 344 185 2 4 345 10 352 8.39e-111 332
MsG0280010520.01.T01 AT2G26600 47.531 324 163 2 29 347 34 355 6.74e-107 322
MsG0280010520.01.T01 AT4G26830 43.804 347 185 6 1 343 1 341 5.99e-97 298
MsG0280010520.01.T01 AT4G26830 45.283 318 168 4 30 343 30 345 3.12e-95 294
MsG0280010520.01.T01 AT5G55180 42.901 324 180 3 29 348 27 349 2.61e-93 289
MsG0280010520.01.T01 AT2G05790 44.345 336 176 6 30 356 26 359 2.77e-93 290
MsG0280010520.01.T01 AT5G55180 42.901 324 180 3 29 348 27 349 3.18e-93 289
MsG0280010520.01.T01 AT5G56590 44.099 322 176 3 26 343 23 344 2.61e-92 288
MsG0280010520.01.T01 AT2G16230 42.197 346 189 4 24 358 19 364 1.07e-91 286
MsG0280010520.01.T01 AT2G26600 51.181 254 124 0 94 347 8 261 1.18e-90 276
MsG0280010520.01.T01 AT5G42720 42.105 342 193 4 8 345 6 346 1.31e-90 281
MsG0280010520.01.T01 AT5G24318 41.159 345 192 6 7 345 7 346 3.45e-90 278
MsG0280010520.01.T01 AT5G24318 39.516 372 211 7 7 369 7 373 3.26e-89 278
MsG0280010520.01.T01 AT5G24318 39.516 372 211 7 7 369 7 373 3.62e-89 278
MsG0280010520.01.T01 AT4G34480 42.286 350 192 5 1 345 1 345 2.53e-87 270
MsG0280010520.01.T01 AT4G34480 41.713 362 196 6 1 352 1 357 6.98e-86 271
MsG0280010520.01.T01 AT3G07320 41.265 332 177 6 30 349 26 351 3.17e-83 263
MsG0280010520.01.T01 AT4G29360 42.210 353 190 6 6 348 10 358 3.24e-83 266
MsG0280010520.01.T01 AT4G29360 41.228 342 197 3 10 348 8 348 3.77e-82 263
MsG0280010520.01.T01 AT4G14080 37.067 375 216 6 1 356 1 374 4.98e-78 250
MsG0280010520.01.T01 AT2G01630 40.248 323 186 3 29 345 23 344 1.02e-77 247
MsG0280010520.01.T01 AT2G01630 40.248 323 186 3 29 345 23 344 1.78e-77 248
MsG0280010520.01.T01 AT2G01630 40.248 323 186 3 29 345 23 344 9.59e-77 248
MsG0280010520.01.T01 AT3G23770 40.120 334 190 6 30 354 38 370 1.57e-74 241
MsG0280010520.01.T01 AT4G16260 37.092 337 200 6 7 341 4 330 5.28e-73 233
MsG0280010520.01.T01 AT1G11820 38.507 335 198 4 30 357 45 378 6.03e-72 231
MsG0280010520.01.T01 AT3G13560 38.769 325 190 4 24 341 21 343 6.11e-72 235
MsG0280010520.01.T01 AT3G13560 38.769 325 190 4 24 341 21 343 6.11e-72 235
MsG0280010520.01.T01 AT3G13560 38.769 325 190 4 24 341 21 343 6.11e-72 235
MsG0280010520.01.T01 AT3G13560 38.769 325 190 4 24 341 21 343 6.11e-72 235
MsG0280010520.01.T01 AT3G13560 38.769 325 190 4 24 341 21 343 6.11e-72 235
MsG0280010520.01.T01 AT3G55430 36.772 378 218 12 2 372 7 370 7.77e-72 233
MsG0280010520.01.T01 AT1G11820 39.375 320 187 3 30 343 45 363 5.44e-71 232
MsG0280010520.01.T01 AT1G11820 39.375 320 187 3 30 343 45 363 7.10e-71 233
MsG0280010520.01.T01 AT2G39640 38.529 340 197 6 10 345 9 340 3.10e-69 229
MsG0280010520.01.T01 AT3G46570 39.017 346 196 10 9 345 5 344 1.56e-68 222
MsG0280010520.01.T01 AT4G16260 37.662 308 182 5 36 341 2 301 3.02e-68 220
MsG0280010520.01.T01 AT3G57260 35.608 337 200 10 10 343 14 336 2.52e-65 213
MsG0280010520.01.T01 AT3G57260 35.608 337 200 10 10 343 30 352 3.12e-65 213
MsG0280010520.01.T01 AT3G57270 35.952 331 196 9 20 343 16 337 2.95e-64 210
MsG0280010520.01.T01 AT4G34480 44.672 244 130 1 114 352 3 246 8.28e-63 208
MsG0280010520.01.T01 AT3G61810 34.259 324 195 7 29 343 55 369 1.04e-61 204
MsG0280010520.01.T01 AT1G66250 35.583 326 202 4 29 348 32 355 1.12e-61 208
MsG0280010520.01.T01 AT5G24318 42.017 238 130 3 136 369 1 234 2.86e-61 202
MsG0280010520.01.T01 AT3G57240 33.968 315 191 8 30 341 36 336 6.85e-57 191
MsG0280010520.01.T01 AT1G77780 33.333 342 212 12 7 343 2 332 7.29e-57 192
MsG0280010520.01.T01 AT1G77790 33.526 346 214 11 8 346 8 344 1.21e-56 191
MsG0280010520.01.T01 AT5G20390 34.311 341 210 10 8 343 12 343 5.37e-56 189
MsG0280010520.01.T01 AT5G20340 33.051 354 210 12 6 343 11 353 2.48e-52 179
MsG0280010520.01.T01 AT5G20330 32.857 350 208 10 9 343 7 344 1.29e-51 177
MsG0280010520.01.T01 AT1G64760 31.198 359 222 13 3 348 1 347 8.75e-45 162
MsG0280010520.01.T01 AT1G64760 31.198 359 222 13 3 348 1 347 8.75e-45 162
MsG0280010520.01.T01 AT1G33220 30.814 344 212 10 6 343 11 334 1.34e-44 159
MsG0280010520.01.T01 AT2G19440 32.121 330 207 10 29 348 21 343 1.55e-44 162
MsG0280010520.01.T01 AT2G19440 32.121 330 207 10 29 348 21 343 1.55e-44 162
MsG0280010520.01.T01 AT5G18220 28.763 372 242 12 13 375 13 370 2.15e-43 159
MsG0280010520.01.T01 AT3G55780 32.492 317 194 12 42 347 48 355 4.10e-43 155
MsG0280010520.01.T01 AT3G04010 30.851 376 233 15 12 375 15 375 5.70e-42 155
MsG0280010520.01.T01 AT5G64790 30.056 356 219 13 10 351 14 353 5.27e-41 152
MsG0280010520.01.T01 AT5G58480 31.845 336 202 12 30 349 27 351 5.92e-40 149
MsG0280010520.01.T01 AT4G31140 28.895 353 231 13 2 345 5 346 2.03e-39 148
MsG0280010520.01.T01 AT5G20870 32.320 362 212 16 12 350 10 361 3.02e-39 148
MsG0280010520.01.T01 AT5G20560 31.310 313 197 10 30 335 35 336 6.17e-39 143
MsG0280010520.01.T01 AT3G24330 29.379 354 226 13 10 348 19 363 4.38e-37 142
MsG0280010520.01.T01 AT4G17180 30.816 331 205 13 30 348 26 344 5.13e-37 141
MsG0280010520.01.T01 AT5G58090 28.875 329 217 11 30 347 23 345 1.09e-35 137

Find 76 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCAATGGTTTGGATTT+TGG 0.082492 2:+70897290 MsG0280010520.01.T01:CDS
TCTCTTTATTCTTACATTCT+TGG 0.132771 2:+70898555 MsG0280010520.01.T01:CDS
ATGCTGTTTCTCACCGTTTC+AGG 0.170134 2:+70896942 MsG0280010520.01.T01:CDS
TACATTAATAGAAGTGATTT+TGG 0.178543 2:-70897549 None:intergenic
TGATTCTCAGCCTTAACTTT+TGG 0.194590 2:+70896880 MsG0280010520.01.T01:five_prime_UTR
ACCCATGATTGTGCCTTAAT+AGG 0.222049 2:-70897494 None:intergenic
TACATTCTTGGTGTTTGTTT+GGG 0.256184 2:+70898567 MsG0280010520.01.T01:CDS
TTACATTCTTGGTGTTTGTT+TGG 0.257209 2:+70898566 MsG0280010520.01.T01:CDS
GAGAATGTTGTTAGAACATT+TGG 0.274660 2:-70897416 None:intergenic
TGCTGTTTACGCTGCTATAA+AGG 0.295122 2:+70897955 MsG0280010520.01.T01:CDS
TATAATGCACTTGTTAATCT+TGG 0.303970 2:+70897641 MsG0280010520.01.T01:CDS
TCAAATGGATCATTCTTTAC+AGG 0.308501 2:+70898636 MsG0280010520.01.T01:CDS
CAAAATTATATGAATAGTTT+CGG 0.327619 2:-70901520 None:intergenic
TCAAATGTTGAATTCATGAT+AGG 0.342689 2:+70897443 MsG0280010520.01.T01:CDS
CCCATGATTGTGCCTTAATA+GGG 0.349920 2:-70897493 None:intergenic
TTCAATCCAAGGTTATAAAC+TGG 0.351246 2:-70898238 None:intergenic
TTATACACTGATTTCATTGC+TGG 0.353428 2:-70897623 None:intergenic
TTGCCTTCAATAATCATTCC+TGG 0.356449 2:-70898289 None:intergenic
AATTCATTCCCTCCTTCATC+TGG 0.362933 2:+70897716 MsG0280010520.01.T01:CDS
AAGTATGAAAGACCCTATTA+AGG 0.379469 2:+70897481 MsG0280010520.01.T01:CDS
TAAATATCAATAGGAATAGA+AGG 0.399395 2:-70898133 None:intergenic
TCTTTACAGGAGGGACTAGT+TGG 0.401333 2:+70898649 MsG0280010520.01.T01:CDS
GTTTATGCAAAGCAATGGTT+TGG 0.402259 2:+70897283 MsG0280010520.01.T01:CDS
AATAAAGAGAACAAAATTGA+TGG 0.410669 2:-70898542 None:intergenic
AAAAGTGCAGGACTTGCTTT+CGG 0.419240 2:-70901462 None:intergenic
CCTGCATCAGAGAGAAACTA+TGG 0.421805 2:+70898193 MsG0280010520.01.T01:CDS
GATTGCTATGAAATTTCAAA+TGG 0.426462 2:+70898621 MsG0280010520.01.T01:CDS
AGTGAAGCTCCAACCTCATC+AGG 0.429944 2:-70898040 None:intergenic
CCATTCTCACCCAAAAGTTA+AGG 0.431048 2:-70896890 None:intergenic
CTGATTTCATTGCTGGAAGA+AGG 0.436678 2:-70897616 None:intergenic
ATCATAATAATTTGTTGAAG+AGG 0.447117 2:+70898080 MsG0280010520.01.T01:CDS
TTTCCAGGAATGATTATTGA+AGG 0.454929 2:+70898286 MsG0280010520.01.T01:CDS
TCATCAGGATCACCTTTAGA+AGG 0.456945 2:-70898025 None:intergenic
GGTACTCCAGTTTATAACCT+TGG 0.457524 2:+70898232 MsG0280010520.01.T01:CDS
TTTAATGAAGATTTGAAGAC+TGG 0.458468 2:+70898169 MsG0280010520.01.T01:CDS
TTACTAACATATGCTTACAT+TGG 0.476813 2:-70898314 None:intergenic
CCCTATTAAGGCACAATCAT+GGG 0.483365 2:+70897493 MsG0280010520.01.T01:CDS
ACCCTATTAAGGCACAATCA+TGG 0.484483 2:+70897492 MsG0280010520.01.T01:CDS
TCTCTAAATGCACCAGATGA+AGG 0.485251 2:-70897728 None:intergenic
GAGACAGGTTGGCCTTCTAA+AGG 0.497141 2:+70898013 MsG0280010520.01.T01:CDS
TTACAGGAGGGACTAGTTGG+AGG 0.498028 2:+70898652 MsG0280010520.01.T01:CDS
TCATAATGCAAATTTGTAGC+AGG 0.507641 2:-70897908 None:intergenic
AAAATCACTTCTATTAATGT+AGG 0.515150 2:+70897551 MsG0280010520.01.T01:CDS
CTGGAAAATAACCTCCTTGA+GGG 0.515738 2:-70898270 None:intergenic
AGTAAAAGACTAACCTGAAA+CGG 0.517656 2:-70896955 None:intergenic
TTTAGAAGGCCAACCTGTCT+CGG 0.517858 2:-70898011 None:intergenic
CTAAGGATTGCCACAAAACA+AGG 0.523627 2:-70896854 None:intergenic
GAGGTTAAGATTTCCGAGAC+AGG 0.525013 2:+70897998 MsG0280010520.01.T01:CDS
CCATAGTTTCTCTCTGATGC+AGG 0.528755 2:-70898193 None:intergenic
TTATAAACTGGAGTACCATC+AGG 0.532992 2:-70898226 None:intergenic
AAGGCTGAGAATCAAAACTA+AGG 0.533627 2:-70896871 None:intergenic
TGCGCTTGAAAGCTAAGAAG+TGG 0.540232 2:-70897773 None:intergenic
TATGGTCTTTATTATCCTGA+TGG 0.543216 2:+70898211 MsG0280010520.01.T01:CDS
CATTATCACTCTGAAGAAGA+AGG 0.546977 2:-70896922 None:intergenic
TAGTTTAATGAAACATGTTG+TGG 0.553999 2:-70897851 None:intergenic
GTCTTGTTTCAACCGAACCC+TGG 0.554364 2:+70897875 MsG0280010520.01.T01:CDS
GGATCAATAGAACCAGGGTT+CGG 0.558568 2:-70897887 None:intergenic
AAAGGTGATCCTGATGAGGT+TGG 0.562864 2:+70898031 MsG0280010520.01.T01:CDS
AGCTTTCAATATTATGATGA+GGG 0.563109 2:+70898590 MsG0280010520.01.T01:CDS
AAGAGGATTGCGATGAAACA+AGG 0.567615 2:+70898097 MsG0280010520.01.T01:CDS
AATGGATCATTCTTTACAGG+AGG 0.574633 2:+70898639 MsG0280010520.01.T01:CDS
GAGCTTTCAATATTATGATG+AGG 0.575702 2:+70898589 MsG0280010520.01.T01:CDS
GATTTGTTTATGCAAAGCAA+TGG 0.583237 2:+70897278 MsG0280010520.01.T01:intron
GTAGCAGGATCAATAGAACC+AGG 0.591805 2:-70897893 None:intergenic
TTAAGATTTCCGAGACAGGT+TGG 0.593135 2:+70898002 MsG0280010520.01.T01:CDS
CTAAATGCACCAGATGAAGG+AGG 0.616012 2:-70897725 None:intergenic
TACGCTGCTATAAAGGCGGT+AGG 0.619683 2:+70897962 MsG0280010520.01.T01:CDS
ATGGATCATTCTTTACAGGA+GGG 0.625996 2:+70898640 MsG0280010520.01.T01:CDS
TTCTAAAGGTGATCCTGATG+AGG 0.626238 2:+70898027 MsG0280010520.01.T01:CDS
CCTGGAAAATAACCTCCTTG+AGG 0.629807 2:-70898271 None:intergenic
TAAATGCACCAGATGAAGGA+GGG 0.634421 2:-70897724 None:intergenic
ACTGCTACACGTGAATGAGA+TGG 0.641775 2:-70897344 None:intergenic
ACGCTGCTATAAAGGCGGTA+GGG 0.646566 2:+70897963 MsG0280010520.01.T01:CDS
TAGCAGGATCAATAGAACCA+GGG 0.673870 2:-70897892 None:intergenic
GGTAGGGCATAGCGATATCG+AGG 0.719545 2:+70897979 MsG0280010520.01.T01:CDS
TGTTTACGCTGCTATAAAGG+CGG 0.719749 2:+70897958 MsG0280010520.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAATAAAAATAATATG+TGG - Chr2:70897009-70897028 None:intergenic 10.0%
!!! CTATTGTTATTATTATAATA+TGG + Chr2:70899236-70899255 MsG0280010520.01.T01:intron 10.0%
!! ATTAACACTAAATAAAATTC+AGG - Chr2:70898700-70898719 None:intergenic 15.0%
!! CAAAATTATATGAATAGTTT+CGG - Chr2:70901523-70901542 None:intergenic 15.0%
!! CTAAAAATATTTGTAAAAAG+TGG - Chr2:70901346-70901365 None:intergenic 15.0%
!! CTGTTATCTTAAATTATTAT+CGG - Chr2:70899103-70899122 None:intergenic 15.0%
!! TAACAAAACTTCAAATAAAA+TGG + Chr2:70901103-70901122 MsG0280010520.01.T01:intron 15.0%
!! TATTATTATAATATGGTGAT+GGG + Chr2:70899243-70899262 MsG0280010520.01.T01:intron 15.0%
!! TTAAATTGTATGATCTTAAT+CGG - Chr2:70900931-70900950 None:intergenic 15.0%
!! TTATTATTATAATATGGTGA+TGG + Chr2:70899242-70899261 MsG0280010520.01.T01:intron 15.0%
!!! GAAAAATAAGTAGTTTTTTT+AGG - Chr2:70899213-70899232 None:intergenic 15.0%
!!! TGATTTTCTTAAGAAATAAA+AGG - Chr2:70899768-70899787 None:intergenic 15.0%
!!! TTCTAACTTAATAAAAGTTT+TGG + Chr2:70900653-70900672 MsG0280010520.01.T01:intron 15.0%
!! AAAAAAAAGTTCATACCAAT+AGG + Chr2:70899881-70899900 MsG0280010520.01.T01:intron 20.0%
!! AAAATCACTTCTATTAATGT+AGG + Chr2:70897551-70897570 MsG0280010520.01.T01:CDS 20.0%
!! AATAAAGAGAACAAAATTGA+TGG - Chr2:70898545-70898564 None:intergenic 20.0%
!! ATACTACAAAATGATAGAAA+GGG - Chr2:70899499-70899518 None:intergenic 20.0%
!! ATTAAAATTGAATAACCAAC+CGG + Chr2:70901139-70901158 MsG0280010520.01.T01:intron 20.0%
!! ATTTATGATTCAGTATTTGT+AGG + Chr2:70898730-70898749 MsG0280010520.01.T01:intron 20.0%
!! GATATTATATAGTATAGACA+TGG + Chr2:70900361-70900380 MsG0280010520.01.T01:intron 20.0%
!! GCAAAAACATAAATATCAAT+AGG - Chr2:70898145-70898164 None:intergenic 20.0%
!! TAAATATCAATAGGAATAGA+AGG - Chr2:70898136-70898155 None:intergenic 20.0%
!! TACAAATACTGAATCATAAA+TGG - Chr2:70898731-70898750 None:intergenic 20.0%
!! TAGAAAATTTCAATAAAGCT+TGG + Chr2:70900158-70900177 MsG0280010520.01.T01:intron 20.0%
!! TATATAAAAAGATAGGCAAA+GGG - Chr2:70899854-70899873 None:intergenic 20.0%
!! TATTAGATTCATAAAACTCA+AGG + Chr2:70900734-70900753 MsG0280010520.01.T01:intron 20.0%
!! TGTTTCAATAATATGTGATT+AGG + Chr2:70900999-70901018 MsG0280010520.01.T01:intron 20.0%
!! TTATAAACCATTGATCAAAT+CGG - Chr2:70899947-70899966 None:intergenic 20.0%
!! TTCAACAAAATTGTTAAAAC+AGG - Chr2:70897186-70897205 None:intergenic 20.0%
!! TTCTCTCTATATAAAAAGAT+AGG - Chr2:70899861-70899880 None:intergenic 20.0%
!! TTGAAACATAATTGTATCAT+AGG - Chr2:70900987-70901006 None:intergenic 20.0%
!! TTTATGATTCAGTATTTGTA+GGG + Chr2:70898731-70898750 MsG0280010520.01.T01:intron 20.0%
!! TTTATTGCTACTAATTACTA+TGG - Chr2:70898846-70898865 None:intergenic 20.0%
!!! AAAGAGTAGTTTTTATTTTC+TGG - Chr2:70897110-70897129 None:intergenic 20.0%
!!! AAGAGTAGTTTTTATTTTCT+GGG - Chr2:70897109-70897128 None:intergenic 20.0%
!!! ATCATAATAATTTGTTGAAG+AGG + Chr2:70898080-70898099 MsG0280010520.01.T01:CDS 20.0%
!!! ATTAACTATCGTATTTGTTA+CGG - Chr2:70900575-70900594 None:intergenic 20.0%
!!! GACAAGAATAATTTTATTCA+CGG - Chr2:70899324-70899343 None:intergenic 20.0%
!!! TAATCCATTACATCATATTT+TGG - Chr2:70901311-70901330 None:intergenic 20.0%
!!! TACATTAATAGAAGTGATTT+TGG - Chr2:70897552-70897571 None:intergenic 20.0%
!!! TCTGTTTTTTTAGTAAACTA+GGG - Chr2:70900766-70900785 None:intergenic 20.0%
!!! TTCTGTTTTTTTAGTAAACT+AGG - Chr2:70900767-70900786 None:intergenic 20.0%
!!! TTTTTTAAGTCTAGACAATT+TGG + Chr2:70901207-70901226 MsG0280010520.01.T01:intron 20.0%
! AAATTCGGTAATACAAAAAG+AGG + Chr2:70899363-70899382 MsG0280010520.01.T01:intron 25.0%
! AATATTGATGTTTGGTTATC+TGG - Chr2:70899421-70899440 None:intergenic 25.0%
! ACATTGACAATATTGATGTT+TGG - Chr2:70899429-70899448 None:intergenic 25.0%
! AGCTTTCAATATTATGATGA+GGG + Chr2:70898590-70898609 MsG0280010520.01.T01:CDS 25.0%
! CAATAATATGTGATTAGGTT+TGG + Chr2:70901004-70901023 MsG0280010520.01.T01:intron 25.0%
! CAATTTGGACAAAATATTCT+AGG + Chr2:70901222-70901241 MsG0280010520.01.T01:intron 25.0%
! CTATATAAAAAGATAGGCAA+AGG - Chr2:70899855-70899874 None:intergenic 25.0%
! GAATTCTTTCTTCATTCTTT+AGG + Chr2:70898800-70898819 MsG0280010520.01.T01:intron 25.0%
! GATACTACAAAATGATAGAA+AGG - Chr2:70899500-70899519 None:intergenic 25.0%
! GATTGCTATGAAATTTCAAA+TGG + Chr2:70898621-70898640 MsG0280010520.01.T01:CDS 25.0%
! GTTTGAAAAATGAGAAAGTT+TGG + Chr2:70898923-70898942 MsG0280010520.01.T01:intron 25.0%
! TAGTTTAATGAAACATGTTG+TGG - Chr2:70897854-70897873 None:intergenic 25.0%
! TCAAATGTTGAATTCATGAT+AGG + Chr2:70897443-70897462 MsG0280010520.01.T01:CDS 25.0%
! TCTCTTTATTCTTACATTCT+TGG + Chr2:70898555-70898574 MsG0280010520.01.T01:CDS 25.0%
! TGCTTAAATTGATACCATTT+AGG - Chr2:70898972-70898991 None:intergenic 25.0%
! TTACTAAAAAAACAGAAGTG+TGG + Chr2:70900770-70900789 MsG0280010520.01.T01:intron 25.0%
! TTACTAACATATGCTTACAT+TGG - Chr2:70898317-70898336 None:intergenic 25.0%
! TTGTAGATTCTTCAAAATGT+GGG + Chr2:70900302-70900321 MsG0280010520.01.T01:intron 25.0%
! TTTAATGAAGATTTGAAGAC+TGG + Chr2:70898169-70898188 MsG0280010520.01.T01:CDS 25.0%
!! AATGTAGGAAATGAAGTTTT+AGG + Chr2:70897566-70897585 MsG0280010520.01.T01:CDS 25.0%
!! TATAATGCACTTGTTAATCT+TGG + Chr2:70897641-70897660 MsG0280010520.01.T01:CDS 25.0%
!! TTAACTATCGTATTTGTTAC+GGG - Chr2:70900574-70900593 None:intergenic 25.0%
!!! ACATTTTGATTGAAATCAGA+CGG - Chr2:70900020-70900039 None:intergenic 25.0%
!!! CTTAGGTGTCTTATTTTAAT+TGG + Chr2:70900851-70900870 MsG0280010520.01.T01:intron 25.0%
!!! GAGTTTTATGAATCTAATAG+AGG - Chr2:70900733-70900752 None:intergenic 25.0%
!!! GTGCTGATTAATTAAATTGT+TGG + Chr2:70900262-70900281 MsG0280010520.01.T01:intron 25.0%
!!! TATCCATTTTTTGCATACAA+AGG + Chr2:70897824-70897843 MsG0280010520.01.T01:CDS 25.0%
!!! TCCAATTTTTGTTAATTTGC+AGG + Chr2:70898513-70898532 MsG0280010520.01.T01:intron 25.0%
!!! TTGGATTTTGGAATAAACTA+TGG + Chr2:70897302-70897321 MsG0280010520.01.T01:CDS 25.0%
!!! TTTTAGAACTTCAGATTTCA+TGG + Chr2:70901360-70901379 MsG0280010520.01.T01:intron 25.0%
!!! TTTTTGGGTATAAAAGTTCT+AGG + Chr2:70901255-70901274 MsG0280010520.01.T01:intron 25.0%
AAAAGATCAAGCATAGACAA+AGG - Chr2:70900518-70900537 None:intergenic 30.0%
AAATGATAGAAAGGGAAAAG+TGG - Chr2:70899491-70899510 None:intergenic 30.0%
AAGTATGAAAGACCCTATTA+AGG + Chr2:70897481-70897500 MsG0280010520.01.T01:CDS 30.0%
AATAAAGTCACCTAACCATA+TGG - Chr2:70900105-70900124 None:intergenic 30.0%
AGTAAAAGACTAACCTGAAA+CGG - Chr2:70896958-70896977 None:intergenic 30.0%
ATAAAGTCACCTAACCATAT+GGG - Chr2:70900104-70900123 None:intergenic 30.0%
ATATGGTTAGGTGACTTTAT+TGG + Chr2:70900104-70900123 MsG0280010520.01.T01:intron 30.0%
ATGTTCCTTTGACATGAATT+TGG + Chr2:70900390-70900409 MsG0280010520.01.T01:intron 30.0%
ATTGTCCAAATTCATGTCAA+AGG - Chr2:70900398-70900417 None:intergenic 30.0%
GAATTCTACAACACAAACTA+TGG - Chr2:70898786-70898805 None:intergenic 30.0%
GAGAATGTTGTTAGAACATT+TGG - Chr2:70897419-70897438 None:intergenic 30.0%
GAGCTTTCAATATTATGATG+AGG + Chr2:70898589-70898608 MsG0280010520.01.T01:CDS 30.0%
GCCTGCAAATTAACAAAAAT+TGG - Chr2:70898517-70898536 None:intergenic 30.0%
GTTGTAGATTCTTCAAAATG+TGG + Chr2:70900301-70900320 MsG0280010520.01.T01:intron 30.0%
TATGGTCTTTATTATCCTGA+TGG + Chr2:70898211-70898230 MsG0280010520.01.T01:CDS 30.0%
TCAAATGGATCATTCTTTAC+AGG + Chr2:70898636-70898655 MsG0280010520.01.T01:CDS 30.0%
TCACCTTTGTATGCAAAAAA+TGG - Chr2:70897830-70897849 None:intergenic 30.0%
TCATAATGCAAATTTGTAGC+AGG - Chr2:70897911-70897930 None:intergenic 30.0%
TGAAGTCCAAATTACAACAA+AGG + Chr2:70899800-70899819 MsG0280010520.01.T01:intron 30.0%
TGAGCCAAAATATGATGTAA+TGG + Chr2:70901304-70901323 MsG0280010520.01.T01:intron 30.0%
TGCATATGATTAATTGCATG+TGG - Chr2:70899288-70899307 None:intergenic 30.0%
TTCAATCCAAGGTTATAAAC+TGG - Chr2:70898241-70898260 None:intergenic 30.0%
TTTCCAGGAATGATTATTGA+AGG + Chr2:70898286-70898305 MsG0280010520.01.T01:CDS 30.0%
! AATGTTTTCATTCAAACCAC+CGG + Chr2:70900035-70900054 MsG0280010520.01.T01:intron 30.0%
! ACGATACAAAAGTGCAAATT+CGG + Chr2:70899348-70899367 MsG0280010520.01.T01:intron 30.0%
! CATTTTCTTAATAACCCACT+TGG - Chr2:70898760-70898779 None:intergenic 30.0%
! CTAGGCTCTTTTTCTTTTTT+GGG + Chr2:70901240-70901259 MsG0280010520.01.T01:intron 30.0%
! GATTTGTTTATGCAAAGCAA+TGG + Chr2:70897278-70897297 MsG0280010520.01.T01:intron 30.0%
! TCTAGGCTCTTTTTCTTTTT+TGG + Chr2:70901239-70901258 MsG0280010520.01.T01:intron 30.0%
!! GGATAAGCATTGATCAAAAA+AGG - Chr2:70897809-70897828 None:intergenic 30.0%
!! TACATTCTTGGTGTTTGTTT+GGG + Chr2:70898567-70898586 MsG0280010520.01.T01:CDS 30.0%
!! TATTTTCTGGGTATTGTAAG+CGG - Chr2:70897097-70897116 None:intergenic 30.0%
!! TTACATTCTTGGTGTTTGTT+TGG + Chr2:70898566-70898585 MsG0280010520.01.T01:CDS 30.0%
!! TTATACACTGATTTCATTGC+TGG - Chr2:70897626-70897645 None:intergenic 30.0%
!!! ATAGAAGTGATTTTGGTTTG+TGG - Chr2:70897545-70897564 None:intergenic 30.0%
!!! TCTAGGCTAGTTTTCTTTTT+CGG + Chr2:70901272-70901291 MsG0280010520.01.T01:intron 30.0%
AAAAGACCTGAATGTCATAC+CGG - Chr2:70900057-70900076 None:intergenic 35.0%
AAACCATTGATCAAATCGGA+TGG - Chr2:70899943-70899962 None:intergenic 35.0%
AAGGCTGAGAATCAAAACTA+AGG - Chr2:70896874-70896893 None:intergenic 35.0%
AATGGATCATTCTTTACAGG+AGG + Chr2:70898639-70898658 MsG0280010520.01.T01:CDS 35.0%
ATGGATCATTCTTTACAGGA+GGG + Chr2:70898640-70898659 MsG0280010520.01.T01:CDS 35.0%
CAAACTACAAGAAAGACACT+TGG - Chr2:70899037-70899056 None:intergenic 35.0%
CATGTGGAAGATAAGAAAGA+TGG - Chr2:70899272-70899291 None:intergenic 35.0%
CTATTTGGACAACATTGGAA+AGG - Chr2:70898998-70899017 None:intergenic 35.0%
CTCGCATTGCAATCTTTAAT+CGG + Chr2:70899592-70899611 MsG0280010520.01.T01:intron 35.0%
GATCGTTTGTTTACGTAGTT+CGG + Chr2:70899655-70899674 MsG0280010520.01.T01:intron 35.0%
GGACAATTCTTACATCATCA+TGG + Chr2:70900411-70900430 MsG0280010520.01.T01:intron 35.0%
GTTTATGCAAAGCAATGGTT+TGG + Chr2:70897283-70897302 MsG0280010520.01.T01:CDS 35.0%
TATCGTTACTTGCACGATTA+GGG + Chr2:70899713-70899732 MsG0280010520.01.T01:intron 35.0%
TCAAATGAGTCGTAATCAGA+AGG - Chr2:70898380-70898399 None:intergenic 35.0%
TCGGTAATACAAAAAGAGGA+AGG + Chr2:70899367-70899386 MsG0280010520.01.T01:intron 35.0%
TTGAAAAATCAAGTCCCTCA+AGG + Chr2:70898256-70898275 MsG0280010520.01.T01:CDS 35.0%
TTGCCTTCAATAATCATTCC+TGG - Chr2:70898292-70898311 None:intergenic 35.0%
TTTGTCACCTTTGTTGAACA+CGG + Chr2:70900076-70900095 MsG0280010520.01.T01:intron 35.0%
! ATAGGAATAGAAGGTTTTGC+AGG - Chr2:70898127-70898146 None:intergenic 35.0%
! CATTATCACTCTGAAGAAGA+AGG - Chr2:70896925-70896944 None:intergenic 35.0%
! GAATTAGTGAAGAAGTGCAT+TGG - Chr2:70901170-70901189 None:intergenic 35.0%
! GATTCTCAGCCTTAACTTTT+GGG + Chr2:70896881-70896900 MsG0280010520.01.T01:five_prime_UTR 35.0%
! GGCAAAACTTTTGCACTATT+TGG - Chr2:70898951-70898970 None:intergenic 35.0%
! GTGCAAAAGTTTTGCCTAAA+TGG + Chr2:70898955-70898974 MsG0280010520.01.T01:intron 35.0%
! TGATTCTCAGCCTTAACTTT+TGG + Chr2:70896880-70896899 MsG0280010520.01.T01:five_prime_UTR 35.0%
! TTATAAACTGGAGTACCATC+AGG - Chr2:70898229-70898248 None:intergenic 35.0%
!! ATAAGTGCTGAATTTCTCTG+TGG + Chr2:70897042-70897061 MsG0280010520.01.T01:intron 35.0%
!! CAAAGCAATGGTTTGGATTT+TGG + Chr2:70897290-70897309 MsG0280010520.01.T01:CDS 35.0%
!! GGACTTGATTTTTCAATCCA+AGG - Chr2:70898252-70898271 None:intergenic 35.0%
!! TGTTGTTGACTTAACTCTGT+TGG + Chr2:70901397-70901416 MsG0280010520.01.T01:intron 35.0%
!!! AAGTGATTTTGGTTTGTGGA+AGG - Chr2:70897541-70897560 None:intergenic 35.0%
!!! ATTTTGGTTTGTGGAAGGTA+AGG - Chr2:70897536-70897555 None:intergenic 35.0%
!!! CTAGGCTAGTTTTCTTTTTC+GGG + Chr2:70901273-70901292 MsG0280010520.01.T01:intron 35.0%
AAAAATCAAGTCCCTCAAGG+AGG + Chr2:70898259-70898278 MsG0280010520.01.T01:CDS 40.0%
AAAATGTGGGTCGCAAAAAG+TGG + Chr2:70900315-70900334 MsG0280010520.01.T01:intron 40.0%
AAAGAGGAAGGAAAGTCTTG+AGG + Chr2:70899379-70899398 MsG0280010520.01.T01:intron 40.0%
AACTCTGTTGGATCTATGCA+GGG + Chr2:70901409-70901428 MsG0280010520.01.T01:intron 40.0%
AAGAGGATTGCGATGAAACA+AGG + Chr2:70898097-70898116 MsG0280010520.01.T01:CDS 40.0%
AATATCCGAAGCAGACTACT+CGG - Chr2:70898421-70898440 None:intergenic 40.0%
AATTCATTCCCTCCTTCATC+TGG + Chr2:70897716-70897735 MsG0280010520.01.T01:CDS 40.0%
ACCCATGATTGTGCCTTAAT+AGG - Chr2:70897497-70897516 None:intergenic 40.0%
ACCCTATTAAGGCACAATCA+TGG + Chr2:70897492-70897511 MsG0280010520.01.T01:CDS 40.0%
ACGCCTTTAATCCTAAGCAT+GGG + Chr2:70899160-70899179 MsG0280010520.01.T01:intron 40.0%
AGGTTTGGAGATTGCAAGTA+GGG + Chr2:70901019-70901038 MsG0280010520.01.T01:intron 40.0%
CCAAATTACAACAAAGGTCG+CGG + Chr2:70899806-70899825 MsG0280010520.01.T01:intron 40.0%
CCATTCTCACCCAAAAGTTA+AGG - Chr2:70896893-70896912 None:intergenic 40.0%
CCCATGATTGTGCCTTAATA+GGG - Chr2:70897496-70897515 None:intergenic 40.0%
CCCTATTAAGGCACAATCAT+GGG + Chr2:70897493-70897512 MsG0280010520.01.T01:CDS 40.0%
CTAAGGATTGCCACAAAACA+AGG - Chr2:70896857-70896876 None:intergenic 40.0%
CTACAACTACTCTGTAGTCT+TGG - Chr2:70899688-70899707 None:intergenic 40.0%
CTGATTTCATTGCTGGAAGA+AGG - Chr2:70897619-70897638 None:intergenic 40.0%
CTGGAAAATAACCTCCTTGA+GGG - Chr2:70898273-70898292 None:intergenic 40.0%
GGACACTATTTGGACAACAT+TGG - Chr2:70899003-70899022 None:intergenic 40.0%
GGTACTCCAGTTTATAACCT+TGG + Chr2:70898232-70898251 MsG0280010520.01.T01:CDS 40.0%
GGTTAGGTGACTTTATTGGA+CGG + Chr2:70900108-70900127 MsG0280010520.01.T01:intron 40.0%
GTACCCATGCTTAGGATTAA+AGG - Chr2:70899166-70899185 None:intergenic 40.0%
GTATCGTTACTTGCACGATT+AGG + Chr2:70899712-70899731 MsG0280010520.01.T01:intron 40.0%
TAAATGCACCAGATGAAGGA+GGG - Chr2:70897727-70897746 None:intergenic 40.0%
TAACTCTGTTGGATCTATGC+AGG + Chr2:70901408-70901427 MsG0280010520.01.T01:intron 40.0%
TACATCATCATGGTCCAAGT+GGG + Chr2:70900421-70900440 MsG0280010520.01.T01:intron 40.0%
TAGCAGGATCAATAGAACCA+GGG - Chr2:70897895-70897914 None:intergenic 40.0%
TAGGTTTGGAGATTGCAAGT+AGG + Chr2:70901018-70901037 MsG0280010520.01.T01:intron 40.0%
TATTTGTAGGGATGCCAAGT+GGG + Chr2:70898743-70898762 MsG0280010520.01.T01:intron 40.0%
TCATCAGGATCACCTTTAGA+AGG - Chr2:70898028-70898047 None:intergenic 40.0%
TCTCTAAATGCACCAGATGA+AGG - Chr2:70897731-70897750 None:intergenic 40.0%
TGATAGAAAGGGAAAAGTGG+TGG - Chr2:70899488-70899507 None:intergenic 40.0%
TGTGAACCTTATCTCAGATG+TGG + Chr2:70899450-70899469 MsG0280010520.01.T01:intron 40.0%
TGTTTACGCTGCTATAAAGG+CGG + Chr2:70897958-70897977 MsG0280010520.01.T01:CDS 40.0%
TTAAGATTTCCGAGACAGGT+TGG + Chr2:70898002-70898021 MsG0280010520.01.T01:CDS 40.0%
TTACATCATCATGGTCCAAG+TGG + Chr2:70900420-70900439 MsG0280010520.01.T01:intron 40.0%
TTGAGCATCTGAATGGTGAA+TGG + Chr2:70900195-70900214 MsG0280010520.01.T01:intron 40.0%
TTGTCACCTTTGTTGAACAC+GGG + Chr2:70900077-70900096 MsG0280010520.01.T01:intron 40.0%
! AAAAGTGCAGGACTTGCTTT+CGG - Chr2:70901465-70901484 None:intergenic 40.0%
! AAGGGAAAAGTGGTGGAAAA+AGG - Chr2:70899481-70899500 None:intergenic 40.0%
! AGGGAAAAGTGGTGGAAAAA+GGG - Chr2:70899480-70899499 None:intergenic 40.0%
! CAACCATCCGATTTGATCAA+TGG + Chr2:70899937-70899956 MsG0280010520.01.T01:intron 40.0%
! CTAAGCACTACAAAAAGTGC+AGG - Chr2:70901477-70901496 None:intergenic 40.0%
! CTTAGGATTAAAGGCGTGTT+CGG - Chr2:70899157-70899176 None:intergenic 40.0%
! TAGTGAAGAAGTGCATTGGT+AGG - Chr2:70901166-70901185 None:intergenic 40.0%
! TGCTGTTTACGCTGCTATAA+AGG + Chr2:70897955-70897974 MsG0280010520.01.T01:CDS 40.0%
! TTCTAAAGGTGATCCTGATG+AGG + Chr2:70898027-70898046 MsG0280010520.01.T01:CDS 40.0%
!! CCTTAACTTTTGGGTGAGAA+TGG + Chr2:70896890-70896909 MsG0280010520.01.T01:exon 40.0%
AAAAAGATAGGCAAAGGGCG+AGG - Chr2:70899849-70899868 None:intergenic 45.0%
AAAAGATAGGCAAAGGGCGA+GGG - Chr2:70899848-70899867 None:intergenic 45.0%
AAACCACCGGTATGACATTC+AGG + Chr2:70900048-70900067 MsG0280010520.01.T01:intron 45.0%
AAAGGTGATCCTGATGAGGT+TGG + Chr2:70898031-70898050 MsG0280010520.01.T01:CDS 45.0%
AATAGGTCGTGCGGTCAAAT+AGG + Chr2:70899898-70899917 MsG0280010520.01.T01:intron 45.0%
ACATCATAAGTCGTGACGGT+AGG - Chr2:70900806-70900825 None:intergenic 45.0%
ACTGCTACACGTGAATGAGA+TGG - Chr2:70897347-70897366 None:intergenic 45.0%
ATAGGTCGTGCGGTCAAATA+GGG + Chr2:70899899-70899918 MsG0280010520.01.T01:intron 45.0%
CACGCCTTTAATCCTAAGCA+TGG + Chr2:70899159-70899178 MsG0280010520.01.T01:intron 45.0%
CCATAGTTTCTCTCTGATGC+AGG - Chr2:70898196-70898215 None:intergenic 45.0%
CCTGCATCAGAGAGAAACTA+TGG + Chr2:70898193-70898212 MsG0280010520.01.T01:CDS 45.0%
CCTGGAAAATAACCTCCTTG+AGG - Chr2:70898274-70898293 None:intergenic 45.0%
CTAAATGCACCAGATGAAGG+AGG - Chr2:70897728-70897747 None:intergenic 45.0%
CTCTATACTACCCAGAACCA+CGG + Chr2:70899538-70899557 MsG0280010520.01.T01:intron 45.0%
GAGGTTAAGATTTCCGAGAC+AGG + Chr2:70897998-70898017 MsG0280010520.01.T01:CDS 45.0%
GAGTCGTAATCAGAAGGTCT+AGG - Chr2:70898374-70898393 None:intergenic 45.0%
GATGTTTGGTTATCTGGCAC+TGG - Chr2:70899415-70899434 None:intergenic 45.0%
GCATGCACTAGGACACTATT+TGG - Chr2:70899013-70899032 None:intergenic 45.0%
GCTATGTAGTACCCATGCTT+AGG - Chr2:70899174-70899193 None:intergenic 45.0%
GGATCAATAGAACCAGGGTT+CGG - Chr2:70897890-70897909 None:intergenic 45.0%
GTAGCAGGATCAATAGAACC+AGG - Chr2:70897896-70897915 None:intergenic 45.0%
GTATTTGTAGGGATGCCAAG+TGG + Chr2:70898742-70898761 MsG0280010520.01.T01:intron 45.0%
GTGACTCTTGAGCATCTGAA+TGG + Chr2:70900188-70900207 MsG0280010520.01.T01:intron 45.0%
GTTCATACCAATAGGTCGTG+CGG + Chr2:70899889-70899908 MsG0280010520.01.T01:intron 45.0%
TATTTGACCGCACGACCTAT+TGG - Chr2:70899899-70899918 None:intergenic 45.0%
TCTGTCAATCTCAACCCACT+TGG - Chr2:70900438-70900457 None:intergenic 45.0%
TGCGCTTGAAAGCTAAGAAG+TGG - Chr2:70897776-70897795 None:intergenic 45.0%
TTTAGAAGGCCAACCTGTCT+CGG - Chr2:70898014-70898033 None:intergenic 45.0%
! AAGAAGTGCATTGGTAGGAC+CGG - Chr2:70901161-70901180 None:intergenic 45.0%
! CCGCGACCTTTGTTGTAATT+TGG - Chr2:70899809-70899828 None:intergenic 45.0%
! GGGAAAAGTGGTGGAAAAAG+GGG - Chr2:70899479-70899498 None:intergenic 45.0%
! GGGATTCCACATCTGAGATA+AGG - Chr2:70899459-70899478 None:intergenic 45.0%
! TACTCTGTAGTCTTGGCACA+CGG - Chr2:70899681-70899700 None:intergenic 45.0%
! TCTTTACAGGAGGGACTAGT+TGG + Chr2:70898649-70898668 MsG0280010520.01.T01:CDS 45.0%
!! ACTACTCGGTTGGTGAGATA+AGG - Chr2:70898407-70898426 None:intergenic 45.0%
!! ATGCTGTTTCTCACCGTTTC+AGG + Chr2:70896942-70896961 MsG0280010520.01.T01:CDS 45.0%
!! CCTCAAGGAGGTTATTTTCC+AGG + Chr2:70898271-70898290 MsG0280010520.01.T01:CDS 45.0%
!! CTACTCGGTTGGTGAGATAA+GGG - Chr2:70898406-70898425 None:intergenic 45.0%
!! TGTTCGGTGCAAGACACATA+TGG - Chr2:70899141-70899160 None:intergenic 45.0%
!! ACTTAAAAAAAAAAAAAAAA+AGG - Chr2:70901197-70901216 None:intergenic 5.0%
AAAAACTGCGACCGTGGTTC+TGG - Chr2:70899552-70899571 None:intergenic 50.0%
AAAACTGCGACCGTGGTTCT+GGG - Chr2:70899551-70899570 None:intergenic 50.0%
AACACGGGTCCCATATGGTT+AGG + Chr2:70900092-70900111 MsG0280010520.01.T01:intron 50.0%
ACCAACCGAGTAGTCTGCTT+CGG + Chr2:70898413-70898432 MsG0280010520.01.T01:intron 50.0%
ACGCTGCTATAAAGGCGGTA+GGG + Chr2:70897963-70897982 MsG0280010520.01.T01:CDS 50.0%
AGACCTGAATGTCATACCGG+TGG - Chr2:70900054-70900073 None:intergenic 50.0%
AGTGAAGCTCCAACCTCATC+AGG - Chr2:70898043-70898062 None:intergenic 50.0%
ATGGGACCCGTGTTCAACAA+AGG - Chr2:70900086-70900105 None:intergenic 50.0%
CTGTTGGATCTATGCAGGGA+GGG + Chr2:70901413-70901432 MsG0280010520.01.T01:intron 50.0%
GGGGACATCATAAGTCGTGA+CGG - Chr2:70900810-70900829 None:intergenic 50.0%
TACGCTGCTATAAAGGCGGT+AGG + Chr2:70897962-70897981 MsG0280010520.01.T01:CDS 50.0%
TAGGCCACTTGCGCAATCAT+AGG + Chr2:70898819-70898838 MsG0280010520.01.T01:intron 50.0%
TCTGTTGGATCTATGCAGGG+AGG + Chr2:70901412-70901431 MsG0280010520.01.T01:intron 50.0%
TGGACCTATGATTGCGCAAG+TGG - Chr2:70898826-70898845 None:intergenic 50.0%
TGTTGAACACGGGTCCCATA+TGG + Chr2:70900087-70900106 MsG0280010520.01.T01:intron 50.0%
! AGAACCACGGTCGCAGTTTT+TGG + Chr2:70899551-70899570 MsG0280010520.01.T01:intron 50.0%
!! AGACACTTGGTGCATGCACT+AGG - Chr2:70899024-70899043 None:intergenic 50.0%
!! GAGACAGGTTGGCCTTCTAA+AGG + Chr2:70898013-70898032 MsG0280010520.01.T01:CDS 50.0%
!! GTCTTGTTTCAACCGAACCC+TGG + Chr2:70897875-70897894 MsG0280010520.01.T01:CDS 50.0%
!! TTACAGGAGGGACTAGTTGG+AGG + Chr2:70898652-70898671 MsG0280010520.01.T01:CDS 50.0%
!! TTTGGTTATCTGGCACTGGC+AGG - Chr2:70899411-70899430 None:intergenic 50.0%
!!! CGCAGTTTTTGGCATGCTAG+CGG + Chr2:70899562-70899581 MsG0280010520.01.T01:intron 50.0%
CATGCCAAAAACTGCGACCG+TGG - Chr2:70899558-70899577 None:intergenic 55.0%
CGCAAAAAGTGGCATGGAGG+TGG + Chr2:70900326-70900345 MsG0280010520.01.T01:intron 55.0%
GGTAGGGCATAGCGATATCG+AGG + Chr2:70897979-70897998 MsG0280010520.01.T01:CDS 55.0%
GGTCGCAAAAAGTGGCATGG+AGG + Chr2:70900323-70900342 MsG0280010520.01.T01:intron 55.0%
GTGGGTCGCAAAAAGTGGCA+TGG + Chr2:70900320-70900339 MsG0280010520.01.T01:intron 55.0%
TCCGAAGCAGACTACTCGGT+TGG - Chr2:70898417-70898436 None:intergenic 55.0%
! AGTGCATTGGTAGGACCGGT+TGG - Chr2:70901157-70901176 None:intergenic 55.0%
! GGGTATTGTAAGCGGCAGAG+TGG - Chr2:70897089-70897108 None:intergenic 55.0%
!! GTTATCTGGCACTGGCAGGA+GGG - Chr2:70899407-70899426 None:intergenic 55.0%
!! GGAGGGACTAGTTGGAGGTG+AGG + Chr2:70898657-70898676 MsG0280010520.01.T01:intron 60.0%
!! GGTTATCTGGCACTGGCAGG+AGG - Chr2:70899408-70899427 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 70896847 70901611 70896847 ID=MsG0280010520.01;Name=MsG0280010520.01
Chr2 mRNA 70896847 70901611 70896847 ID=MsG0280010520.01.T01;Parent=MsG0280010520.01;Name=MsG0280010520.01.T01;_AED=0.48;_eAED=0.48;_QI=62|0.66|0.75|1|0.33|0.5|4|115|436
Chr2 exon 70896847 70896963 70896847 ID=MsG0280010520.01.T01:exon:10052;Parent=MsG0280010520.01.T01
Chr2 exon 70897279 70898328 70897279 ID=MsG0280010520.01.T01:exon:10053;Parent=MsG0280010520.01.T01
Chr2 exon 70898535 70898673 70898535 ID=MsG0280010520.01.T01:exon:10054;Parent=MsG0280010520.01.T01
Chr2 exon 70901430 70901611 70901430 ID=MsG0280010520.01.T01:exon:10055;Parent=MsG0280010520.01.T01
Chr2 five_prime_UTR 70896847 70896908 70896847 ID=MsG0280010520.01.T01:five_prime_utr;Parent=MsG0280010520.01.T01
Chr2 CDS 70896909 70896963 70896909 ID=MsG0280010520.01.T01:cds;Parent=MsG0280010520.01.T01
Chr2 CDS 70897279 70898328 70897279 ID=MsG0280010520.01.T01:cds;Parent=MsG0280010520.01.T01
Chr2 CDS 70898535 70898673 70898535 ID=MsG0280010520.01.T01:cds;Parent=MsG0280010520.01.T01
Chr2 CDS 70901430 70901496 70901430 ID=MsG0280010520.01.T01:cds;Parent=MsG0280010520.01.T01
Chr2 three_prime_UTR 70901497 70901611 70901497 ID=MsG0280010520.01.T01:three_prime_utr;Parent=MsG0280010520.01.T01
Gene Sequence

>MsG0280010520.01.T01

ATGGCAATCTCTTCCTTCTTCTTCAGAGTGATAATGCTGTTTCTCACCGTTTCAGATTTGTTTATGCAAAGCAATGGTTTGGATTTTGGAATAAACTATGGACAAATAGCAAACAATTTACCATCTCATTCACGTGTAGCAGTTCTTATAAAATCATTGAATGTGAGCAGAATCAAACTCTATGATGCTGATCCAAATGTTCTAACAACATTCTCAAATTCAAATGTTGAATTCATGATAGGACTTAATGATCTTCAAAGTATGAAAGACCCTATTAAGGCACAATCATGGGTTCAACAAAATGTTCAACCTTACCTTCCACAAACCAAAATCACTTCTATTAATGTAGGAAATGAAGTTTTAGGTAACAATGATATAAACAGTTATAATAACCTTCTTCCAGCAATGAAATCAGTGTATAATGCACTTGTTAATCTTGGATTATCTCAACAAGTTACTGTCACAACTTCACATTCTTTCATCATTATGTCAAATTCATTCCCTCCTTCATCTGGTGCATTTAGAGAAGATTTGATTCAATATATTCAACCACTTCTTAGCTTTCAAGCGCAAATCAAATCGCCTTTTTTGATCAATGCTTATCCATTTTTTGCATACAAAGGTGATCCACAACATGTTTCATTAAACTATGTCTTGTTTCAACCGAACCCTGGTTCTATTGATCCTGCTACAAATTTGCATTATGATAACATGTTGTATGCTCAAATCGATGCTGTTTACGCTGCTATAAAGGCGGTAGGGCATAGCGATATCGAGGTTAAGATTTCCGAGACAGGTTGGCCTTCTAAAGGTGATCCTGATGAGGTTGGAGCTTCACTACAGAATGCAGAAATTTATCATAATAATTTGTTGAAGAGGATTGCGATGAAACAAGGAACTCCTGCAAAACCTTCTATTCCTATTGATATTTATGTTTTTGCACTTTTTAATGAAGATTTGAAGACTGGTCCTGCATCAGAGAGAAACTATGGTCTTTATTATCCTGATGGTACTCCAGTTTATAACCTTGGATTGAAAAATCAAGTCCCTCAAGGAGGTTATTTTCCAGGAATGATTATTGAAGGCAAATCCAATGTAAGCATATGCTTTGTCCATCAATTTTGTTCTCTTTATTCTTACATTCTTGGTGTTTGTTTGGGAGCTTTCAATATTATGATGAGGGAAGAAAATGATTGCTATGAAATTTCAAATGGATCATTCTTTACAGGAGGGACTAGTTGGAGGGAGGGAGACAAAAGAAGCAGATCTTTTCATTCCGAAAGCAAGTCCTGCACTTTTTGTAGTGCTTAG
Protein sequence

>MsG0280010520.01.T01

MAISSFFFRVIMLFLTVSDLFMQSNGLDFGINYGQIANNLPSHSRVAVLIKSLNVSRIKLYDADPNVLTTFSNSNVEFMIGLNDLQSMKDPIKAQSWVQQNVQPYLPQTKITSINVGNEVLGNNDINSYNNLLPAMKSVYNALVNLGLSQQVTVTTSHSFIIMSNSFPPSSGAFREDLIQYIQPLLSFQAQIKSPFLINAYPFFAYKGDPQHVSLNYVLFQPNPGSIDPATNLHYDNMLYAQIDAVYAAIKAVGHSDIEVKISETGWPSKGDPDEVGASLQNAEIYHNNLLKRIAMKQGTPAKPSIPIDIYVFALFNEDLKTGPASERNYGLYYPDGTPVYNLGLKNQVPQGGYFPGMIIEGKSNVSICFVHQFCSLYSYILGVCLGAFNIMMREENDCYEISNGSFFTGGTSWREGDKRSRSFHSESKSCTFCSA*