AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010615.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010615.01.T02 MTR_2g088730 92.063 63 5 0 20 82 19 81 6.99e-39 124
MsG0280010615.01.T02 MTR_4g046737 57.831 83 22 3 1 80 1 73 4.32e-23 84.0
MsG0280010615.01.T02 MTR_0247s0040 73.171 41 11 0 35 75 65 105 2.26e-18 75.1
MsG0280010615.01.T02 MTR_8g060940 73.171 41 11 0 35 75 65 105 3.22e-18 75.9
MsG0280010615.01.T02 MTR_4g125520 78.049 41 9 0 35 75 70 110 3.22e-18 76.6
MsG0280010615.01.T02 MTR_5g079670 73.171 41 11 0 35 75 69 109 4.50e-18 74.7
MsG0280010615.01.T02 MTR_4g100720 80.000 40 8 0 36 75 72 111 5.83e-18 73.9
MsG0280010615.01.T02 MTR_2g023100 57.143 49 21 0 33 81 27 75 1.22e-17 70.5
MsG0280010615.01.T02 MTR_5g009460 67.391 46 15 0 33 78 37 82 1.22e-17 70.9
MsG0280010615.01.T02 MTR_3g083540 71.429 42 12 0 34 75 98 139 1.31e-17 75.1
MsG0280010615.01.T02 MTR_7g017260 70.732 41 12 0 35 75 85 125 4.03e-17 73.2
MsG0280010615.01.T02 MTR_4g485530 68.293 41 13 0 35 75 70 110 1.14e-16 70.9
MsG0280010615.01.T02 MTR_7g117730 70.732 41 12 0 35 75 70 110 1.78e-16 71.2
MsG0280010615.01.T02 MTR_0001s0360 65.854 41 14 0 35 75 65 105 1.89e-16 71.2
MsG0280010615.01.T02 MTR_5g079220 65.854 41 14 0 35 75 79 119 3.99e-16 70.9
MsG0280010615.01.T02 MTR_8g020490 70.732 41 12 0 35 75 66 106 4.09e-16 70.5
MsG0280010615.01.T02 MTR_0193s0090 64.286 42 15 0 34 75 64 105 8.96e-16 68.9
MsG0280010615.01.T02 MTR_5g078800 65.854 41 14 0 35 75 65 105 9.34e-16 69.7
MsG0280010615.01.T02 MTR_0197s0010 62.500 40 15 0 35 74 59 98 9.71e-16 68.9
MsG0280010615.01.T02 MTR_5g078910 60.976 41 16 0 35 75 65 105 1.79e-15 69.3
MsG0280010615.01.T02 MTR_4g073420 63.415 41 15 0 35 75 70 110 2.40e-15 68.6
MsG0280010615.01.T02 MTR_5g079290 60.976 41 16 0 35 75 75 115 2.76e-15 68.2
MsG0280010615.01.T02 MTR_5g078950 63.415 41 15 0 35 75 65 105 2.91e-15 68.2
MsG0280010615.01.T02 MTR_5g078860 60.976 41 16 0 35 75 65 105 4.85e-15 68.2
MsG0280010615.01.T02 MTR_8g027345 70.000 40 12 0 36 75 71 110 5.26e-15 67.8
MsG0280010615.01.T02 MTR_5g078930 63.415 41 15 0 35 75 67 107 6.28e-15 66.6
MsG0280010615.01.T02 MTR_3g097450 63.415 41 15 0 35 75 70 110 1.47e-14 66.6
MsG0280010615.01.T02 MTR_5g079120 60.976 41 16 0 35 75 119 159 3.11e-14 65.9
MsG0280010615.01.T02 MTR_4g105130 63.415 41 15 0 35 75 70 110 6.48e-14 65.1
MsG0280010615.01.T02 MTR_3g077110 65.854 41 14 0 35 75 70 110 7.01e-14 65.1
MsG0280010615.01.T02 MTR_1g112760 65.854 41 14 0 35 75 71 111 7.04e-14 63.9
MsG0280010615.01.T02 MTR_2g097910 65.854 41 14 0 35 75 78 118 1.86e-13 63.9
MsG0280010615.01.T02 MTR_0251s0050 62.222 45 14 1 35 79 71 112 2.26e-13 63.2
MsG0280010615.01.T02 MTR_8g098860 65.854 41 14 0 35 75 70 110 2.35e-13 63.5
MsG0280010615.01.T02 MTR_0008s0470 62.222 45 14 1 35 79 71 112 2.89e-13 63.2
MsG0280010615.01.T02 MTR_4g065017 63.415 41 15 0 35 75 75 115 7.85e-13 62.0
MsG0280010615.01.T02 MTR_7g115650 52.381 42 20 0 34 75 69 110 8.71e-13 60.8
MsG0280010615.01.T02 MTR_3g028740 63.415 41 15 0 35 75 80 120 1.12e-12 61.6
MsG0280010615.01.T02 MTR_0008s0390 60.000 45 15 1 35 79 71 112 1.14e-12 61.2
MsG0280010615.01.T02 MTR_5g010020 63.415 41 15 0 35 75 70 110 1.26e-12 61.6
MsG0280010615.01.T02 MTR_7g110830 60.976 41 16 0 35 75 70 110 1.64e-12 61.2
MsG0280010615.01.T02 MTR_2g011660 58.537 41 17 0 35 75 71 111 1.82e-12 61.2
MsG0280010615.01.T02 MTR_4g121460 62.162 37 14 0 39 75 74 110 1.84e-12 61.2
MsG0280010615.01.T02 MTR_1g085040 60.976 41 16 0 35 75 70 110 2.21e-12 60.8
MsG0280010615.01.T02 MTR_3g011610 55.556 45 20 0 32 76 92 136 2.23e-12 60.8
MsG0280010615.01.T02 MTR_1g085640 58.537 41 17 0 35 75 70 110 2.26e-12 60.8
MsG0280010615.01.T02 MTR_1g043050 58.537 41 17 0 35 75 70 110 2.26e-12 60.5
MsG0280010615.01.T02 MTR_4g091490 57.143 42 18 0 35 76 71 112 2.90e-12 60.5
MsG0280010615.01.T02 MTR_7g096930 58.537 41 17 0 35 75 70 110 3.09e-12 60.1
MsG0280010615.01.T02 MTR_7g076740 53.659 41 19 0 35 75 71 111 3.74e-12 60.1
MsG0280010615.01.T02 MTR_1g100653 56.098 41 18 0 35 75 70 110 4.37e-12 59.7
MsG0280010615.01.T02 MTR_6g055910 56.098 41 18 0 35 75 2 42 4.43e-12 58.9
MsG0280010615.01.T02 MTR_2g089620 58.537 41 17 0 35 75 70 110 4.70e-12 59.7
MsG0280010615.01.T02 MTR_6g009430 52.381 42 20 0 35 76 70 111 6.34e-12 59.7
MsG0280010615.01.T02 MTR_8g095390 56.098 41 18 0 35 75 70 110 6.59e-12 59.3
MsG0280010615.01.T02 MTR_0063s0090 47.917 48 25 0 35 82 70 117 6.80e-12 58.5
MsG0280010615.01.T02 MTR_5g007370 54.762 42 19 0 34 75 69 110 8.42e-12 58.9
MsG0280010615.01.T02 MTR_3g052430 53.333 45 21 0 32 76 96 140 1.11e-11 58.9
MsG0280010615.01.T02 MTR_6g055910 56.098 41 18 0 35 75 43 83 1.15e-11 58.5
MsG0280010615.01.T02 MTR_2g034790 56.098 41 18 0 35 75 70 110 1.27e-11 58.5
MsG0280010615.01.T02 MTR_2g064160 53.659 41 19 0 35 75 69 109 1.63e-11 58.2
MsG0280010615.01.T02 MTR_6g055910 56.098 41 18 0 35 75 72 112 1.89e-11 58.2
MsG0280010615.01.T02 MTR_3g461490 50.000 42 21 0 35 76 70 111 2.13e-11 58.2
MsG0280010615.01.T02 MTR_1g100667 54.762 42 19 0 34 75 70 111 2.35e-11 57.8
MsG0280010615.01.T02 MTR_3g045430 46.512 43 23 0 34 76 70 112 2.54e-11 57.8
MsG0280010615.01.T02 MTR_7g111290 60.000 40 16 0 35 74 28 67 2.72e-11 57.8
MsG0280010615.01.T02 MTR_8g031360 53.659 41 19 0 35 75 72 112 2.88e-11 57.4
MsG0280010615.01.T02 MTR_3g052450 51.111 45 22 0 32 76 95 139 3.24e-11 57.8
MsG0280010615.01.T02 MTR_2g089450 53.659 41 19 0 35 75 70 110 3.24e-11 57.0
MsG0280010615.01.T02 MTR_8g042410 51.111 45 22 0 32 76 92 136 3.41e-11 57.8
MsG0280010615.01.T02 MTR_7g111290 60.000 40 16 0 35 74 70 109 3.84e-11 57.4
MsG0280010615.01.T02 MTR_4g082290 57.143 42 18 0 34 75 69 110 4.25e-11 57.4
MsG0280010615.01.T02 MTR_4g082230 57.143 42 18 0 34 75 69 110 4.46e-11 57.4
MsG0280010615.01.T02 MTR_3g074520 48.837 43 22 0 34 76 69 111 4.86e-11 57.0
MsG0280010615.01.T02 MTR_2g089420 53.659 41 19 0 35 75 69 109 5.22e-11 57.0
MsG0280010615.01.T02 MTR_7g011170 57.143 42 18 0 34 75 69 110 5.82e-11 56.6
MsG0280010615.01.T02 MTR_5g014990 50.000 42 21 0 35 76 71 112 6.00e-11 56.6
MsG0280010615.01.T02 MTR_4g478180 52.381 42 20 0 34 75 70 111 6.45e-11 56.6
MsG0280010615.01.T02 MTR_5g029840 52.381 42 20 0 34 75 69 110 7.38e-11 56.6
MsG0280010615.01.T03 MTR_2g088730 91.892 37 3 0 1 37 45 81 7.74e-21 76.6
MsG0280010615.01.T03 MTR_4g046737 71.429 35 10 0 1 35 39 73 5.38e-15 61.6
MsG0280010615.01.T03 MTR_4g100720 80.000 30 6 0 1 30 82 111 2.10e-12 57.4
MsG0280010615.01.T03 MTR_7g117730 76.667 30 7 0 1 30 81 110 6.06e-12 57.0
MsG0280010615.01.T03 MTR_5g009460 65.714 35 12 0 1 35 50 84 6.26e-12 54.3
MsG0280010615.01.T03 MTR_2g023100 61.111 36 14 0 1 36 40 75 9.40e-12 53.5
MsG0280010615.01.T03 MTR_0197s0010 75.862 29 7 0 1 29 70 98 1.10e-11 56.2
MsG0280010615.01.T03 MTR_3g083540 76.667 30 7 0 1 30 110 139 1.13e-11 56.6
MsG0280010615.01.T03 MTR_8g027345 73.333 30 8 0 1 30 81 110 1.49e-11 56.2
MsG0280010615.01.T03 MTR_4g125520 76.667 30 7 0 1 30 81 110 1.70e-11 55.8
MsG0280010615.01.T03 MTR_7g017260 73.333 30 8 0 1 30 96 125 1.94e-11 55.8
MsG0280010615.01.T03 MTR_0247s0040 70.000 30 9 0 1 30 76 105 2.56e-11 54.7
MsG0280010615.01.T03 MTR_5g079670 73.333 30 8 0 1 30 80 109 2.83e-11 54.7
MsG0280010615.01.T03 MTR_0001s0360 70.000 30 9 0 1 30 76 105 6.21e-11 54.3
MsG0280010615.01.T03 MTR_8g060940 70.000 30 9 0 1 30 76 105 6.48e-11 54.3
MsG0280010615.01.T03 MTR_4g485530 70.000 30 9 0 1 30 81 110 6.87e-11 53.5
MsG0280010615.01.T03 MTR_4g073420 70.000 30 9 0 1 30 81 110 9.68e-11 53.9
MsG0280010615.01.T01 MTR_2g088730 84.286 70 6 1 17 86 17 81 3.07e-37 120
MsG0280010615.01.T01 MTR_4g046737 55.172 87 22 4 1 84 1 73 9.36e-21 78.2
MsG0280010615.01.T01 MTR_0247s0040 65.217 46 11 1 34 79 65 105 4.76e-16 68.9
MsG0280010615.01.T01 MTR_4g125520 69.565 46 9 1 34 79 70 110 5.50e-16 70.9
MsG0280010615.01.T01 MTR_8g060940 65.217 46 11 1 34 79 65 105 6.74e-16 69.7
MsG0280010615.01.T01 MTR_5g079670 65.217 46 11 1 34 79 69 109 1.06e-15 68.9
MsG0280010615.01.T01 MTR_4g100720 71.111 45 8 1 35 79 72 111 1.29e-15 67.8
MsG0280010615.01.T01 MTR_3g083540 63.830 47 12 1 33 79 98 139 2.20e-15 68.9
MsG0280010615.01.T01 MTR_5g009460 60.784 51 15 1 32 82 37 82 3.97e-15 64.7
MsG0280010615.01.T01 MTR_2g023100 51.852 54 21 1 32 85 27 75 4.28e-15 63.9
MsG0280010615.01.T01 MTR_7g017260 63.043 46 12 1 34 79 85 125 7.30e-15 67.4
MsG0280010615.01.T01 MTR_4g485530 60.870 46 13 1 34 79 70 110 3.04e-14 64.7
MsG0280010615.01.T01 MTR_7g117730 63.043 46 12 1 34 79 70 110 3.24e-14 65.5
MsG0280010615.01.T01 MTR_0001s0360 58.696 46 14 1 34 79 65 105 3.87e-14 65.1
MsG0280010615.01.T01 MTR_8g020490 63.043 46 12 1 34 79 66 106 7.55e-14 64.3
MsG0280010615.01.T01 MTR_5g079220 58.696 46 14 1 34 79 79 119 8.21e-14 64.7
MsG0280010615.01.T01 MTR_0193s0090 57.447 47 15 1 33 79 64 105 1.95e-13 62.8
MsG0280010615.01.T01 MTR_5g078800 58.696 46 14 1 34 79 65 105 1.97e-13 63.5
MsG0280010615.01.T01 MTR_0197s0010 55.556 45 15 1 34 78 59 98 2.48e-13 62.8
MsG0280010615.01.T01 MTR_5g078910 54.348 46 16 1 34 79 65 105 3.81e-13 62.8
MsG0280010615.01.T01 MTR_8g027345 62.222 45 12 1 35 79 71 110 4.34e-13 62.8
MsG0280010615.01.T01 MTR_4g073420 56.522 46 15 1 34 79 70 110 4.66e-13 62.8
MsG0280010615.01.T01 MTR_5g079290 54.348 46 16 1 34 79 75 115 5.53e-13 62.4
MsG0280010615.01.T01 MTR_5g078950 56.522 46 15 1 34 79 65 105 6.49e-13 62.0
MsG0280010615.01.T01 MTR_5g078860 54.348 46 16 1 34 79 65 105 1.01e-12 62.0
MsG0280010615.01.T01 MTR_5g078930 56.522 46 15 1 34 79 67 107 1.33e-12 60.8
MsG0280010615.01.T01 MTR_3g097450 56.522 46 15 1 34 79 70 110 2.88e-12 60.5
MsG0280010615.01.T01 MTR_5g079120 54.348 46 16 1 34 79 119 159 5.72e-12 59.7
MsG0280010615.01.T01 MTR_4g105130 56.522 46 15 1 34 79 70 110 1.29e-11 58.9
MsG0280010615.01.T01 MTR_3g077110 58.696 46 14 1 34 79 70 110 1.32e-11 58.9
MsG0280010615.01.T01 MTR_1g112760 58.696 46 14 1 34 79 71 111 1.65e-11 57.8
MsG0280010615.01.T01 MTR_2g097910 58.696 46 14 1 34 79 78 118 3.55e-11 57.4
MsG0280010615.01.T01 MTR_0251s0050 56.000 50 14 2 34 83 71 112 4.06e-11 57.4
MsG0280010615.01.T01 MTR_8g098860 58.696 46 14 1 34 79 70 110 4.34e-11 57.4
MsG0280010615.01.T01 MTR_0008s0470 56.000 50 14 2 34 83 71 112 4.54e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010615.01.T02 AT2G46410 68.889 45 14 0 33 77 36 80 8.06e-18 71.2
MsG0280010615.01.T02 AT1G01380 42.500 80 46 0 3 82 2 81 9.60e-18 70.9
MsG0280010615.01.T02 AT5G14750 66.667 42 14 0 35 76 13 54 1.64e-17 72.0
MsG0280010615.01.T02 AT5G14750 66.667 42 14 0 35 76 13 54 1.64e-17 72.0
MsG0280010615.01.T02 AT4G01060 58.621 58 20 1 20 73 16 73 3.72e-17 69.3
MsG0280010615.01.T02 AT3G13540 73.171 41 11 0 35 75 81 121 3.98e-17 73.2
MsG0280010615.01.T02 AT5G14750 68.293 41 13 0 35 75 40 80 4.20e-17 71.6
MsG0280010615.01.T02 AT5G52600 73.171 41 11 0 35 75 70 110 6.00e-17 71.6
MsG0280010615.01.T02 AT3G27920 64.444 45 16 0 31 75 68 112 8.23e-17 72.0
MsG0280010615.01.T02 AT5G14750 68.293 41 13 0 35 75 74 114 9.11e-17 71.2
MsG0280010615.01.T02 AT4G01060 70.732 41 12 0 33 73 30 70 1.02e-16 68.2
MsG0280010615.01.T02 AT5G40330 68.293 41 13 0 35 75 70 110 1.26e-16 71.2
MsG0280010615.01.T02 AT4G01060 70.732 41 12 0 33 73 31 71 1.62e-16 67.4
MsG0280010615.01.T02 AT1G66370 64.286 42 15 0 34 75 65 106 2.88e-16 70.9
MsG0280010615.01.T02 AT5G35550 73.171 41 11 0 35 75 75 115 3.93e-16 70.5
MsG0280010615.01.T02 AT5G35550 73.171 41 11 0 35 75 72 112 6.32e-16 70.1
MsG0280010615.01.T02 AT1G22640 63.415 41 15 0 35 75 13 53 1.34e-15 68.2
MsG0280010615.01.T02 AT4G09460 63.415 41 15 0 35 75 70 110 2.63e-15 68.2
MsG0280010615.01.T02 AT4G38620 63.415 41 15 0 35 75 70 110 3.62e-15 68.2
MsG0280010615.01.T02 AT1G22640 63.415 41 15 0 35 75 70 110 4.07e-15 67.8
MsG0280010615.01.T02 AT1G71030 60.976 41 16 0 35 75 24 64 6.77e-15 65.9
MsG0280010615.01.T02 AT2G16720 63.415 41 15 0 35 75 70 110 7.98e-15 67.0
MsG0280010615.01.T02 AT1G71030 60.976 41 16 0 35 75 38 78 8.47e-15 65.9
MsG0280010615.01.T02 AT5G53200 59.091 44 18 0 33 76 31 74 1.10e-14 63.5
MsG0280010615.01.T02 AT5G12870 68.293 41 13 0 35 75 76 116 2.24e-14 66.2
MsG0280010615.01.T02 AT4G34990 63.415 41 15 0 35 75 70 110 3.03e-14 65.5
MsG0280010615.01.T02 AT5G26660 65.854 41 14 0 35 75 39 79 8.92e-14 64.7
MsG0280010615.01.T02 AT1G35515 58.537 41 17 0 35 75 70 110 9.23e-14 63.5
MsG0280010615.01.T02 AT2G30424 56.818 44 19 0 33 76 34 77 1.22e-13 60.8
MsG0280010615.01.T02 AT5G26660 65.854 41 14 0 35 75 70 110 1.34e-13 64.3
MsG0280010615.01.T02 AT1G18960 46.429 56 27 1 21 76 52 104 1.87e-13 63.5
MsG0280010615.01.T02 AT5G49330 60.976 41 16 0 35 75 70 110 2.15e-13 63.5
MsG0280010615.01.T02 AT2G30420 56.522 46 20 0 33 78 38 83 2.56e-13 60.5
MsG0280010615.01.T02 AT4G01680 63.415 41 15 0 35 75 70 110 4.68e-13 62.0
MsG0280010615.01.T02 AT4G01680 63.415 41 15 0 35 75 70 110 5.59e-13 62.4
MsG0280010615.01.T02 AT4G01680 63.415 41 15 0 35 75 82 122 5.87e-13 62.4
MsG0280010615.01.T02 AT2G47460 58.537 41 17 0 35 75 70 110 6.48e-13 62.4
MsG0280010615.01.T02 AT5G55020 55.556 45 20 0 32 76 81 125 7.26e-13 62.4
MsG0280010615.01.T02 AT3G08500 63.415 41 15 0 35 75 88 128 7.28e-13 62.4
MsG0280010615.01.T02 AT1G63910 65.854 41 14 0 35 75 70 110 9.04e-13 62.0
MsG0280010615.01.T02 AT2G30432 50.000 58 26 1 22 76 19 76 1.09e-12 58.2
MsG0280010615.01.T02 AT4G17785 58.140 43 18 0 34 76 70 112 1.17e-12 61.6
MsG0280010615.01.T02 AT4G17785 59.524 42 17 0 34 75 70 111 1.19e-12 61.6
MsG0280010615.01.T02 AT5G06100 55.556 45 20 0 32 76 87 131 1.26e-12 61.6
MsG0280010615.01.T02 AT5G06100 55.556 45 20 0 32 76 87 131 1.33e-12 61.6
MsG0280010615.01.T02 AT5G06100 55.556 45 20 0 32 76 87 131 1.33e-12 61.6
MsG0280010615.01.T02 AT5G06100 55.556 45 20 0 32 76 87 131 1.33e-12 61.6
MsG0280010615.01.T02 AT5G06100 55.556 45 20 0 32 76 87 131 1.33e-12 61.6
MsG0280010615.01.T02 AT3G23250 54.762 42 19 0 35 76 13 54 1.59e-12 60.5
MsG0280010615.01.T02 AT3G11440 55.556 45 20 0 32 76 96 140 1.98e-12 61.2
MsG0280010615.01.T02 AT4G05100 58.537 41 17 0 35 75 71 111 2.17e-12 60.8
MsG0280010615.01.T02 AT1G09540 60.976 41 16 0 35 75 70 110 2.18e-12 60.8
MsG0280010615.01.T02 AT3G11440 55.556 45 20 0 32 76 96 140 2.28e-12 60.8
MsG0280010615.01.T02 AT3G11440 55.556 45 20 0 32 76 96 140 2.28e-12 60.8
MsG0280010615.01.T02 AT3G11440 55.556 45 20 0 32 76 96 140 2.28e-12 60.8
MsG0280010615.01.T02 AT5G54230 58.140 43 18 0 34 76 69 111 2.34e-12 60.8
MsG0280010615.01.T02 AT5G16770 57.143 42 18 0 35 76 70 111 2.63e-12 60.5
MsG0280010615.01.T02 AT5G16770 57.143 42 18 0 35 76 70 111 2.63e-12 60.5
MsG0280010615.01.T02 AT4G26930 53.333 45 21 0 32 76 74 118 2.93e-12 60.5
MsG0280010615.01.T02 AT1G57560 58.537 41 17 0 35 75 70 110 3.01e-12 60.5
MsG0280010615.01.T02 AT5G16770 57.143 42 18 0 35 76 70 111 3.04e-12 60.5
MsG0280010615.01.T02 AT5G16770 57.143 42 18 0 35 76 70 111 3.04e-12 60.5
MsG0280010615.01.T02 AT3G61250 56.098 41 18 0 35 75 70 110 3.31e-12 60.1
MsG0280010615.01.T02 AT1G57560 58.537 41 17 0 35 75 70 110 3.98e-12 59.7
MsG0280010615.01.T02 AT4G21440 56.098 41 18 0 35 75 70 110 4.12e-12 60.1
MsG0280010615.01.T02 AT5G56110 51.163 43 21 0 34 76 69 111 4.48e-12 60.1
MsG0280010615.01.T02 AT3G02940 57.143 42 18 0 35 76 70 111 4.61e-12 60.1
MsG0280010615.01.T02 AT3G02940 57.143 42 18 0 35 76 70 111 5.26e-12 59.7
MsG0280010615.01.T02 AT3G02940 57.143 42 18 0 35 76 70 111 5.26e-12 59.7
MsG0280010615.01.T02 AT3G23250 56.098 41 18 0 35 75 70 110 5.91e-12 59.3
MsG0280010615.01.T02 AT2G32460 53.333 45 21 0 32 76 73 117 6.18e-12 59.7
MsG0280010615.01.T02 AT2G32460 53.333 45 21 0 32 76 61 105 6.80e-12 59.7
MsG0280010615.01.T02 AT1G66380 69.048 42 13 0 34 75 32 73 1.06e-11 56.2
MsG0280010615.01.T02 AT4G28110 56.098 41 18 0 35 75 70 110 1.83e-11 58.2
MsG0280010615.01.T02 AT5G10280 52.381 42 20 0 35 76 70 111 1.98e-11 58.2
MsG0280010615.01.T02 AT1G74080 59.524 42 17 0 34 75 69 110 2.12e-11 58.2
MsG0280010615.01.T02 AT5G60890 57.143 42 18 0 34 75 69 110 2.14e-11 58.2
MsG0280010615.01.T02 AT1G66380 69.048 42 13 0 34 75 65 106 2.82e-11 55.8
MsG0280010615.01.T02 AT4G12350 57.143 42 18 0 35 76 70 111 3.27e-11 57.4
MsG0280010615.01.T02 AT1G06180 56.098 41 18 0 35 75 70 110 4.53e-11 56.6
MsG0280010615.01.T02 AT3G13890 56.098 41 18 0 35 75 70 110 4.63e-11 57.4
MsG0280010615.01.T02 AT3G13890 56.098 41 18 0 35 75 79 119 4.67e-11 57.4
MsG0280010615.01.T02 AT3G49690 50.000 42 21 0 35 76 71 112 5.70e-11 57.0
MsG0280010615.01.T02 AT1G18570 59.524 42 17 0 34 75 70 111 5.77e-11 57.0
MsG0280010615.01.T02 AT3G12720 51.220 41 20 0 35 75 80 120 9.29e-11 56.2
MsG0280010615.01.T03 AT2G46410 71.875 32 9 0 1 32 49 80 3.03e-12 55.1
MsG0280010615.01.T03 AT1G66370 73.333 30 8 0 1 30 77 106 6.59e-12 57.0
MsG0280010615.01.T03 AT5G52600 76.667 30 7 0 1 30 81 110 6.83e-12 56.2
MsG0280010615.01.T03 AT3G13540 76.667 30 7 0 1 30 92 121 7.44e-12 56.6
MsG0280010615.01.T03 AT1G01380 64.865 37 13 0 1 37 45 81 8.53e-12 53.9
MsG0280010615.01.T03 AT4G01060 78.571 28 6 0 1 28 43 70 1.64e-11 52.8
MsG0280010615.01.T03 AT4G01060 78.571 28 6 0 1 28 46 73 1.65e-11 52.8
MsG0280010615.01.T03 AT4G01060 78.571 28 6 0 1 28 44 71 2.31e-11 52.4
MsG0280010615.01.T03 AT5G14750 66.667 30 10 0 1 30 24 53 4.85e-11 53.1
MsG0280010615.01.T03 AT5G14750 66.667 30 10 0 1 30 24 53 4.85e-11 53.1
MsG0280010615.01.T03 AT5G35550 73.333 30 8 0 1 30 86 115 5.69e-11 54.3
MsG0280010615.01.T03 AT1G22640 70.000 30 9 0 1 30 24 53 6.10e-11 53.9
MsG0280010615.01.T03 AT5G35550 73.333 30 8 0 1 30 83 112 8.24e-11 53.9
MsG0280010615.01.T03 AT5G14750 66.667 30 10 0 1 30 51 80 9.13e-11 52.8
MsG0280010615.01.T03 AT4G09460 70.000 30 9 0 1 30 81 110 9.80e-11 53.5
MsG0280010615.01.T03 AT4G38620 70.000 30 9 0 1 30 81 110 9.96e-11 53.9
MsG0280010615.01.T01 AT2G46410 62.000 50 14 1 32 81 36 80 2.57e-15 65.1
MsG0280010615.01.T01 AT4G01060 55.556 63 19 2 19 77 16 73 3.98e-15 64.3
MsG0280010615.01.T01 AT5G14750 59.574 47 14 1 34 80 13 54 4.17e-15 65.9
MsG0280010615.01.T01 AT5G14750 59.574 47 14 1 34 80 13 54 4.17e-15 65.9
MsG0280010615.01.T01 AT3G13540 65.217 46 11 1 34 79 81 121 6.85e-15 67.4
MsG0280010615.01.T01 AT5G14750 60.870 46 13 1 34 79 40 80 9.89e-15 65.5
MsG0280010615.01.T01 AT5G52600 65.217 46 11 1 34 79 70 110 1.16e-14 65.9
MsG0280010615.01.T01 AT3G27920 58.000 50 16 1 30 79 68 112 1.50e-14 66.2
MsG0280010615.01.T01 AT1G01380 41.176 85 44 2 3 86 2 81 1.50e-14 62.8
MsG0280010615.01.T01 AT5G14750 60.870 46 13 1 34 79 74 114 2.08e-14 65.5
MsG0280010615.01.T01 AT4G01060 63.043 46 12 1 32 77 30 70 2.60e-14 62.0
MsG0280010615.01.T01 AT5G40330 60.870 46 13 1 34 79 70 110 2.77e-14 65.1
MsG0280010615.01.T01 AT4G01060 63.043 46 12 1 32 77 31 71 4.56e-14 61.6
MsG0280010615.01.T01 AT1G66370 57.447 47 15 1 33 79 65 106 4.69e-14 65.1
MsG0280010615.01.T01 AT5G35550 65.217 46 11 1 34 79 75 115 6.80e-14 64.7
MsG0280010615.01.T01 AT5G35550 65.217 46 11 1 34 79 72 112 1.13e-13 63.9
MsG0280010615.01.T01 AT1G22640 56.522 46 15 1 34 79 13 53 2.97e-13 62.4
MsG0280010615.01.T01 AT4G09460 56.522 46 15 1 34 79 70 110 4.75e-13 62.0
MsG0280010615.01.T01 AT4G38620 56.522 46 15 1 34 79 70 110 6.69e-13 62.4
MsG0280010615.01.T01 AT1G22640 56.522 46 15 1 34 79 70 110 7.68e-13 62.0
MsG0280010615.01.T01 AT2G16720 56.522 46 15 1 34 79 70 110 1.53e-12 61.2
MsG0280010615.01.T01 AT1G71030 54.348 46 16 1 34 79 24 64 1.63e-12 60.1
MsG0280010615.01.T01 AT1G71030 54.348 46 16 1 34 79 38 78 1.93e-12 60.1
MsG0280010615.01.T01 AT5G53200 54.348 46 16 1 32 77 31 71 3.39e-12 57.4
MsG0280010615.01.T01 AT5G12870 60.870 46 13 1 34 79 76 116 4.93e-12 59.7
MsG0280010615.01.T01 AT5G26660 58.696 46 14 1 34 79 39 79 1.64e-11 58.5
MsG0280010615.01.T01 AT1G35515 52.174 46 17 1 34 79 70 110 2.00e-11 57.4
MsG0280010615.01.T01 AT4G34990 56.522 46 15 1 34 79 70 110 2.37e-11 57.8
MsG0280010615.01.T01 AT5G26660 58.696 46 14 1 34 79 70 110 2.60e-11 58.2
MsG0280010615.01.T01 AT1G18960 42.623 61 27 2 20 80 52 104 3.20e-11 57.8
MsG0280010615.01.T01 AT5G49330 54.348 46 16 1 34 79 70 110 3.52e-11 57.8
MsG0280010615.01.T01 AT2G30424 51.020 49 19 1 32 80 34 77 3.90e-11 54.7
MsG0280010615.01.T01 AT2G30420 50.980 51 20 1 32 82 38 83 8.51e-11 53.9
MsG0280010615.01.T01 AT2G47460 52.174 46 17 1 34 79 70 110 9.57e-11 56.6

Find 21 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATTCTTCCCGCAATTAA+AGG 0.273501 2:+72319360 None:intergenic
ATTTCTTCAGCTGTTCTTCC+AGG 0.284663 2:+72319339 None:intergenic
CTGAAGAAATAAAGAATTAC+TGG 0.302151 2:-72319326 MsG0280010615.01.T02:CDS
TGCTCGAGTACCACTGGAAT+TGG 0.306964 2:+72319571 None:intergenic
GTTTCTTCTGATTCTTCTAT+AGG 0.312939 2:-72320077 MsG0280010615.01.T02:CDS
TTCAGGTGGCCTTTAATTGC+GGG 0.402968 2:-72319369 MsG0280010615.01.T02:intron
TGCATAAACTAGTGGGGAAT+AGG 0.420415 2:-72319499 MsG0280010615.01.T02:intron
ATCTTTAGAAAATTCTACCT+TGG 0.470913 2:+72319544 None:intergenic
TTAATTGCGGGAAGAATACC+TGG 0.506099 2:-72319357 MsG0280010615.01.T02:CDS
ATCAGAATGCATAAACTAGT+GGG 0.508733 2:-72319506 MsG0280010615.01.T02:CDS
GGAATTTGCTCGAGTACCAC+TGG 0.525793 2:+72319565 None:intergenic
TTTCAGGTGGCCTTTAATTG+CGG 0.532623 2:-72319370 MsG0280010615.01.T02:intron
TCTAACACTTCATTGGCTAG+TGG 0.552143 2:+72319287 None:intergenic
CATCAGAATGCATAAACTAG+TGG 0.565044 2:-72319507 MsG0280010615.01.T02:CDS
ATCAGAAGAAACTTCCTCAG+AGG 0.657355 2:+72320088 None:intergenic
CTCAGAGGAGCATTCCACGT+TGG 0.660148 2:+72320103 None:intergenic
CAAGATATATATGGCCAACG+TGG 0.664840 2:-72320117 None:intergenic
CAACGTGGAATGCTCCTCTG+AGG 0.672099 2:-72320102 MsG0280010615.01.T02:CDS
TGGTACTCGAGCAAATTCCA+AGG 0.672421 2:-72319561 MsG0280010615.01.T02:CDS
TCAGAATGCATAAACTAGTG+GGG 0.674017 2:-72319505 MsG0280010615.01.T02:CDS
GCAGTACAATCCAATTCCAG+TGG 0.684849 2:-72319581 MsG0280010615.01.T02:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATATATTATATTCAAA+TGG + Chr2:72320009-72320028 None:intergenic 10.0%
!!! TAATATATGAATTAATTTTC+AGG - Chr2:72320017-72320036 MsG0280010615.01.T02:intron 10.0%
!!! TGAAAAACTTTTATTTAATT+TGG + Chr2:72319684-72319703 None:intergenic 10.0%
!! AGTGTTAATTATTTATACAA+AGG + Chr2:72319956-72319975 None:intergenic 15.0%
!! ATATATTGATAAAAAAAACG+AGG + Chr2:72319715-72319734 None:intergenic 15.0%
!! TGAATGAATGAATAAATTAA+AGG + Chr2:72319354-72319373 None:intergenic 15.0%
!! TTGTATAAATAATTAACACT+TGG - Chr2:72319956-72319975 MsG0280010615.01.T02:intron 15.0%
!! ATCTTCTTAATCAAACATAT+GGG + Chr2:72319381-72319400 None:intergenic 20.0%
!!! TATATGAATTAATTTTCAGG+TGG - Chr2:72320020-72320039 MsG0280010615.01.T02:intron 20.0%
!!! TATTTTGCTTTTATTAAACG+AGG + Chr2:72319743-72319762 None:intergenic 20.0%
!!! TTTTTTAGGTTTAGACTAAA+TGG - Chr2:72319532-72319551 MsG0280010615.01.T02:CDS 20.0%
! ATGGAGTTATGAGAAATTAT+TGG - Chr2:72319403-72319422 MsG0280010615.01.T02:intron 25.0%
! CATCTTCTTAATCAAACATA+TGG + Chr2:72319382-72319401 None:intergenic 25.0%
! CTGAAGAAATAAAGAATTAC+TGG - Chr2:72320077-72320096 MsG0280010615.01.T02:CDS 25.0%
!! ATCTTTAGAAAATTCTACCT+TGG + Chr2:72319862-72319881 None:intergenic 25.0%
ATCAGAATGCATAAACTAGT+GGG - Chr2:72319897-72319916 MsG0280010615.01.T02:intron 30.0%
GTTTCTTCTGATTCTTCTAT+AGG - Chr2:72319326-72319345 MsG0280010615.01.T02:CDS 30.0%
TATGACAAACTGCATTTAGA+TGG - Chr2:72319761-72319780 MsG0280010615.01.T02:intron 30.0%
TGTTTGATTAAGAAGATGCA+TGG - Chr2:72319384-72319403 MsG0280010615.01.T02:intron 30.0%
ACAAACTGCATTTAGATGGA+GGG - Chr2:72319765-72319784 MsG0280010615.01.T02:intron 35.0%
CATCAGAATGCATAAACTAG+TGG - Chr2:72319896-72319915 MsG0280010615.01.T02:intron 35.0%
TCAGAATGCATAAACTAGTG+GGG - Chr2:72319898-72319917 MsG0280010615.01.T02:intron 35.0%
ATCAGAAGAAACTTCCTCAG+AGG + Chr2:72319318-72319337 None:intergenic 40.0%
ATTTCTTCAGCTGTTCTTCC+AGG + Chr2:72320067-72320086 None:intergenic 40.0%
CAAACTGCATTTAGATGGAG+GGG - Chr2:72319766-72319785 MsG0280010615.01.T02:intron 40.0%
GACAAACTGCATTTAGATGG+AGG - Chr2:72319764-72319783 MsG0280010615.01.T02:intron 40.0%
GGTATTCTTCCCGCAATTAA+AGG + Chr2:72320046-72320065 None:intergenic 40.0%
TGCATAAACTAGTGGGGAAT+AGG - Chr2:72319904-72319923 MsG0280010615.01.T02:intron 40.0%
TTAATTGCGGGAAGAATACC+TGG - Chr2:72320046-72320065 MsG0280010615.01.T02:intron 40.0%
! TTTCAGGTGGCCTTTAATTG+CGG - Chr2:72320033-72320052 MsG0280010615.01.T02:intron 40.0%
GCAGTACAATCCAATTCCAG+TGG - Chr2:72319822-72319841 MsG0280010615.01.T02:intron 45.0%
TGGTACTCGAGCAAATTCCA+AGG - Chr2:72319842-72319861 MsG0280010615.01.T02:intron 45.0%
TTCAGGTGGCCTTTAATTGC+GGG - Chr2:72320034-72320053 MsG0280010615.01.T02:intron 45.0%
!!! ATAAGTAAAAATTATTTTTT+AGG - Chr2:72319518-72319537 MsG0280010615.01.T02:CDS 5.0%
TGCTCGAGTACCACTGGAAT+TGG + Chr2:72319835-72319854 None:intergenic 50.0%
! GGAATTTGCTCGAGTACCAC+TGG + Chr2:72319841-72319860 None:intergenic 50.0%
CAACGTGGAATGCTCCTCTG+AGG - Chr2:72319301-72319320 MsG0280010615.01.T02:CDS 55.0%
!! CTCAGAGGAGCATTCCACGT+TGG + Chr2:72319303-72319322 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 72319296 72320129 72319296 ID=MsG0280010615.01;Name=MsG0280010615.01
Chr2 mRNA 72319296 72320129 72319296 ID=MsG0280010615.01.T01;Parent=MsG0280010615.01;Name=MsG0280010615.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0|3|0|86
Chr2 exon 72319296 72319401 72319296 ID=MsG0280010615.01.T01:exon:15296;Parent=MsG0280010615.01.T01
Chr2 exon 72319500 72319602 72319500 ID=MsG0280010615.01.T01:exon:15295;Parent=MsG0280010615.01.T01
Chr2 exon 72320078 72320129 72320078 ID=MsG0280010615.01.T01:exon:15294;Parent=MsG0280010615.01.T01
Chr2 CDS 72320078 72320129 72320078 ID=MsG0280010615.01.T01:cds;Parent=MsG0280010615.01.T01
Chr2 CDS 72319500 72319602 72319500 ID=MsG0280010615.01.T01:cds;Parent=MsG0280010615.01.T01
Chr2 CDS 72319296 72319401 72319296 ID=MsG0280010615.01.T01:cds;Parent=MsG0280010615.01.T01
Chr2 mRNA 72319296 72320129 72319296 ID=MsG0280010615.01.T02;Parent=MsG0280010615.01;Name=MsG0280010615.01.T02;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|0|0|3|0|82
Chr2 exon 72319500 72319599 72319500 ID=MsG0280010615.01.T02:exon:15298;Parent=MsG0280010615.01.T02
Chr2 exon 72320072 72320129 72320072 ID=MsG0280010615.01.T02:exon:15297;Parent=MsG0280010615.01.T02
Chr2 CDS 72320072 72320129 72320072 ID=MsG0280010615.01.T02:cds;Parent=MsG0280010615.01.T02
Chr2 CDS 72319500 72319599 72319500 ID=MsG0280010615.01.T02:cds;Parent=MsG0280010615.01.T02
Chr2 CDS 72319296 72319386 72319296 ID=MsG0280010615.01.T02:cds;Parent=MsG0280010615.01.T02
Chr2 mRNA 72319296 72319522 72319296 ID=MsG0280010615.01.T03;Parent=MsG0280010615.01;Name=MsG0280010615.01.T03;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|0|0|2|0|37
Chr2 exon 72319500 72319522 72319500 ID=MsG0280010615.01.T03:exon:15300;Parent=MsG0280010615.01.T03
Chr2 CDS 72319500 72319522 72319500 ID=MsG0280010615.01.T03:cds;Parent=MsG0280010615.01.T03
Chr2 CDS 72319296 72319386 72319296 ID=MsG0280010615.01.T03:cds;Parent=MsG0280010615.01.T03
Gene Sequence

>MsG0280010615.01.T02

ATGGCCAACGTGGAATGCTCCTCTGAGGAAGTTTCTTCTGATTCTTCTATAGGTACCTTACAATCCAATTCCAGTGGTACTCGAGCAAATTCCAAGGTAGAATTTTCTAAAGATGAAGAAGATCTTATCATCAGAATGCATAAACTAGTGGGGAATAGGTGGCCTTTAATTGCGGGAAGAATACCTGGAAGAACAGCTGAAGAAATAAAGAATTACTGGAATTCAAGACACACTTCCACTAGCCAATGA

>MsG0280010615.01.T03

ATGCATAAACTAGTGGGGAATAGGTGGCCTTTAATTGCGGGAAGAATACCTGGAAGAACAGCTGAAGAAATAAAGAATTACTGGAATTCAAGACACACTTCCACTAGCCAATGA

>MsG0280010615.01.T01

ATGGCCAACGTGGAATGCTCCTCTGAGGAAGTTTCTTCTGATTCTTCTATAGCAGTACAATCCAATTCCAGTGGTACTCGAGCAAATTCCAAGGTAGAATTTTCTAAAGATGAAGAAGATCTTATCATCAGAATGCATAAACTAGTGGGGAATAGTGAATTAATTTTCAGGTGGCCTTTAATTGCGGGAAGAATACCTGGAAGAACAGCTGAAGAAATAAAGAATTACTGGAATTCAAGACACACTTCCACTAGCCAATGA
Protein sequence

>MsG0280010615.01.T02

MANVECSSEEVSSDSSIGTLQSNSSGTRANSKVEFSKDEEDLIIRMHKLVGNRWPLIAGRIPGRTAEEIKNYWNSRHTSTSQ*

>MsG0280010615.01.T03

MHKLVGNRWPLIAGRIPGRTAEEIKNYWNSRHTSTSQ*

>MsG0280010615.01.T01

MANVECSSEEVSSDSSIAVQSNSSGTRANSKVEFSKDEEDLIIRMHKLVGNSELIFRWPLIAGRIPGRTAEEIKNYWNSRHTSTSQ*