Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010798.01.T01 | KEH39224.1 | 95.77 | 331 | 6 | 2 | 1 | 331 | 1 | 323 | 0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010798.01.T01 | Q9M2K4 | 59.249 | 346 | 109 | 10 | 1 | 331 | 1 | 329 | 8.21E-120 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010798.01.T01 | A0A072VB17 | 95.770 | 331 | 6 | 2 | 1 | 331 | 1 | 323 | 0.0 | 638 |
| MsG0280010798.01.T01 | G7ZUL8 | 95.758 | 330 | 6 | 2 | 1 | 330 | 1 | 322 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280010798.01 | MsG0580024835.01 | 0.802118 | 6.528571e-49 | 3.171976e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010798.01.T01 | MTR_2g090900 | 95.758 | 330 | 6 | 2 | 1 | 330 | 1 | 322 | 0.0 | 638 |
| MsG0280010798.01.T01 | MTR_2g090900 | 95.770 | 331 | 6 | 2 | 1 | 331 | 1 | 323 | 0.0 | 638 |
| MsG0280010798.01.T01 | MTR_4g079500 | 62.931 | 348 | 92 | 14 | 1 | 331 | 1 | 328 | 6.77e-125 | 361 |
| MsG0280010798.01.T01 | MTR_2g078370 | 38.938 | 226 | 105 | 10 | 1 | 205 | 1 | 214 | 3.36e-29 | 112 |
| MsG0280010798.01.T01 | MTR_8g088650 | 35.094 | 265 | 145 | 8 | 44 | 294 | 73 | 324 | 3.89e-28 | 112 |
| MsG0280010798.01.T01 | MTR_2g078360 | 67.647 | 68 | 16 | 1 | 253 | 314 | 1 | 68 | 1.51e-23 | 93.2 |
| MsG0280010798.01.T01 | MTR_5g075390 | 48.936 | 94 | 48 | 0 | 198 | 291 | 158 | 251 | 2.54e-20 | 90.9 |
| MsG0280010798.01.T01 | MTR_4g072090 | 44.828 | 116 | 56 | 1 | 197 | 312 | 358 | 465 | 3.84e-20 | 91.3 |
| MsG0280010798.01.T01 | MTR_3g005230 | 51.724 | 87 | 42 | 0 | 208 | 294 | 136 | 222 | 6.43e-20 | 87.8 |
| MsG0280010798.01.T01 | MTR_2g099050 | 44.737 | 114 | 58 | 2 | 197 | 310 | 219 | 327 | 3.36e-19 | 88.2 |
| MsG0280010798.01.T01 | MTR_3g467120 | 46.237 | 93 | 50 | 0 | 199 | 291 | 177 | 269 | 1.85e-18 | 85.5 |
| MsG0280010798.01.T01 | MTR_6g034945 | 46.000 | 100 | 54 | 0 | 197 | 296 | 149 | 248 | 6.61e-18 | 83.2 |
| MsG0280010798.01.T01 | MTR_3g094020 | 45.745 | 94 | 51 | 0 | 198 | 291 | 107 | 200 | 2.28e-17 | 81.6 |
| MsG0280010798.01.T01 | MTR_4g072090 | 47.561 | 82 | 43 | 0 | 197 | 278 | 358 | 439 | 1.92e-15 | 77.0 |
| MsG0280010798.01.T01 | MTR_1g023690 | 48.980 | 98 | 46 | 2 | 198 | 293 | 386 | 481 | 1.65e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010798.01.T01 | AT3G58120 | 59.249 | 346 | 109 | 10 | 1 | 331 | 1 | 329 | 8.37e-121 | 351 |
| MsG0280010798.01.T01 | AT2G42380 | 57.225 | 346 | 107 | 8 | 1 | 331 | 1 | 320 | 8.09e-115 | 335 |
| MsG0280010798.01.T01 | AT2G42380 | 53.757 | 346 | 108 | 9 | 1 | 331 | 1 | 309 | 2.76e-103 | 305 |
| MsG0280010798.01.T01 | AT3G58120 | 58.020 | 293 | 96 | 8 | 1 | 278 | 1 | 281 | 6.87e-100 | 296 |
| MsG0280010798.01.T01 | AT2G42380 | 56.701 | 291 | 87 | 7 | 1 | 278 | 1 | 265 | 8.47e-93 | 277 |
| MsG0280010798.01.T01 | AT2G42380 | 49.206 | 252 | 89 | 7 | 1 | 239 | 1 | 226 | 9.62e-62 | 197 |
| MsG0280010798.01.T01 | AT2G42380 | 49.206 | 252 | 89 | 7 | 1 | 239 | 1 | 226 | 9.62e-62 | 197 |
| MsG0280010798.01.T01 | AT1G58110 | 30.448 | 335 | 161 | 11 | 2 | 294 | 20 | 324 | 1.81e-27 | 110 |
| MsG0280010798.01.T01 | AT1G58110 | 30.448 | 335 | 161 | 11 | 2 | 294 | 20 | 324 | 1.81e-27 | 110 |
| MsG0280010798.01.T01 | AT1G43700 | 46.491 | 114 | 56 | 1 | 185 | 293 | 175 | 288 | 5.44e-21 | 92.4 |
| MsG0280010798.01.T01 | AT4G38900 | 48.421 | 95 | 49 | 0 | 197 | 291 | 392 | 486 | 5.50e-20 | 91.3 |
| MsG0280010798.01.T01 | AT4G38900 | 48.421 | 95 | 49 | 0 | 197 | 291 | 392 | 486 | 5.50e-20 | 91.3 |
| MsG0280010798.01.T01 | AT5G04840 | 29.276 | 304 | 163 | 8 | 2 | 296 | 5 | 265 | 2.17e-19 | 87.4 |
| MsG0280010798.01.T01 | AT2G40620 | 46.316 | 95 | 51 | 0 | 197 | 291 | 146 | 240 | 3.31e-19 | 87.8 |
| MsG0280010798.01.T01 | AT1G06850 | 48.387 | 93 | 48 | 0 | 199 | 291 | 148 | 240 | 1.11e-18 | 85.9 |
| MsG0280010798.01.T01 | AT1G06070 | 46.316 | 95 | 51 | 0 | 197 | 291 | 208 | 302 | 1.35e-18 | 86.7 |
| MsG0280010798.01.T01 | AT2G31370 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 4.28e-18 | 84.7 |
| MsG0280010798.01.T01 | AT2G21230 | 46.392 | 97 | 52 | 0 | 197 | 293 | 368 | 464 | 4.59e-18 | 85.5 |
| MsG0280010798.01.T01 | AT2G21230 | 46.392 | 97 | 52 | 0 | 197 | 293 | 368 | 464 | 4.59e-18 | 85.5 |
| MsG0280010798.01.T01 | AT2G31370 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 4.75e-18 | 84.7 |
| MsG0280010798.01.T01 | AT2G31370 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 4.75e-18 | 84.7 |
| MsG0280010798.01.T01 | AT2G31370 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 4.75e-18 | 84.7 |
| MsG0280010798.01.T01 | AT2G31370 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 4.75e-18 | 84.7 |
| MsG0280010798.01.T01 | AT2G31370 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 4.75e-18 | 84.7 |
| MsG0280010798.01.T01 | AT2G31370 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 4.75e-18 | 84.7 |
| MsG0280010798.01.T01 | AT4G38900 | 45.545 | 101 | 49 | 1 | 197 | 291 | 392 | 492 | 8.40e-18 | 84.7 |
| MsG0280010798.01.T01 | AT1G35490 | 28.226 | 248 | 133 | 7 | 46 | 291 | 54 | 258 | 5.28e-17 | 80.5 |
| MsG0280010798.01.T01 | AT1G35490 | 28.226 | 248 | 133 | 7 | 46 | 291 | 54 | 258 | 5.28e-17 | 80.5 |
| MsG0280010798.01.T01 | AT5G04840 | 29.371 | 286 | 150 | 8 | 2 | 278 | 5 | 247 | 4.18e-16 | 77.0 |
| MsG0280010798.01.T01 | AT2G21230 | 42.718 | 103 | 53 | 1 | 197 | 293 | 368 | 470 | 1.01e-15 | 78.2 |
| MsG0280010798.01.T01 | AT2G21230 | 46.341 | 82 | 44 | 0 | 197 | 278 | 368 | 449 | 3.30e-14 | 73.6 |
| MsG0280010798.01.T01 | AT5G07160 | 41.237 | 97 | 57 | 0 | 195 | 291 | 44 | 140 | 2.95e-12 | 64.3 |
| MsG0280010798.01.T01 | AT1G06850 | 68.889 | 45 | 14 | 0 | 198 | 242 | 147 | 191 | 5.00e-11 | 62.4 |
Find 65 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCCCTTGTGTGGTTTC+TGG | 0.097414 | 2:+75196320 | MsG0280010798.01.T01:five_prime_UTR |
| GAAATATACATATTTATTAA+AGG | 0.205907 | 2:+75196342 | MsG0280010798.01.T01:five_prime_UTR |
| GGTGACATGTTTGGGATCTT+AGG | 0.259620 | 2:-75196578 | None:intergenic |
| GTTTGTAGTGACAATGTTAT+TGG | 0.263094 | 2:-75196657 | None:intergenic |
| GCATTAGAATCTTGGCAAAT+AGG | 0.275046 | 2:+75197567 | MsG0280010798.01.T01:intron |
| CCTCAAATTTGTTGTTGTTA+AGG | 0.275676 | 2:-75196493 | None:intergenic |
| GAGAAGAAGGAAAATGATTT+AGG | 0.296863 | 2:+75197001 | MsG0280010798.01.T01:CDS |
| GCCAACTTGGTGACATGTTT+GGG | 0.333815 | 2:-75196586 | None:intergenic |
| TTATTAAAGGGTTGTGTTAG+AGG | 0.345247 | 2:+75196355 | MsG0280010798.01.T01:five_prime_UTR |
| CATTGGCTTTCTACCTCATC+AGG | 0.351950 | 2:-75197067 | None:intergenic |
| AAATATACATATTTATTAAA+GGG | 0.356758 | 2:+75196343 | MsG0280010798.01.T01:five_prime_UTR |
| GCGTAGTGTAACTTCATTGC+AGG | 0.377738 | 2:+75197643 | MsG0280010798.01.T01:CDS |
| GGCCAACTTGGTGACATGTT+TGG | 0.381627 | 2:-75196587 | None:intergenic |
| GACAATGTTATTGGTTGAAA+TGG | 0.385822 | 2:-75196648 | None:intergenic |
| TCTGTTTGAGAATCACATAT+TGG | 0.388915 | 2:-75199126 | None:intergenic |
| CCATCTTCTTGAGGTTCTGA+TGG | 0.391631 | 2:-75199062 | None:intergenic |
| GAAGAATAAACAAGAGAAGA+AGG | 0.396694 | 2:+75196988 | MsG0280010798.01.T01:CDS |
| ACCAATGCTTGATGATTGTC+GGG | 0.399558 | 2:+75196790 | MsG0280010798.01.T01:CDS |
| AAGAAGATGGAAAATGCTAA+TGG | 0.406779 | 2:+75199075 | MsG0280010798.01.T01:CDS |
| CCTTAACAACAACAAATTTG+AGG | 0.410672 | 2:+75196493 | MsG0280010798.01.T01:five_prime_UTR |
| ATCAGAATCAGAACCCTTCA+TGG | 0.433073 | 2:+75196684 | MsG0280010798.01.T01:CDS |
| ACCACACAAGGGAATGTTAG+AGG | 0.439664 | 2:-75196314 | None:intergenic |
| GGAGATAGAAAGATTAAGAC+AGG | 0.441141 | 2:+75199032 | MsG0280010798.01.T01:CDS |
| GCATTGTTGTTGTTACTTTG+AGG | 0.444336 | 2:-75197109 | None:intergenic |
| TACAAAACTATATAACAAAC+AGG | 0.456508 | 2:-75196528 | None:intergenic |
| CCCTCTAACATTCCCTTGTG+TGG | 0.457112 | 2:+75196313 | MsG0280010798.01.T01:five_prime_UTR |
| CACCAATGCTTGATGATTGT+CGG | 0.462711 | 2:+75196789 | MsG0280010798.01.T01:CDS |
| ATTAACATACAATGTATGAA+TGG | 0.472844 | 2:-75196404 | None:intergenic |
| TTCTGATCTGAAGGACTCGA+AGG | 0.485897 | 2:-75196938 | None:intergenic |
| GGTAGAAAGCCAATGCAAAC+AGG | 0.488493 | 2:+75197075 | MsG0280010798.01.T01:CDS |
| CCATCAGAACCTCAAGAAGA+TGG | 0.490491 | 2:+75199062 | MsG0280010798.01.T01:CDS |
| TTAACATACAATGTATGAAT+GGG | 0.503238 | 2:-75196403 | None:intergenic |
| ATGTTTAGTGATGAAATATC+TGG | 0.505923 | 2:+75196878 | MsG0280010798.01.T01:CDS |
| TGAAAAGCTTGTCTTGTGCA+AGG | 0.507196 | 2:-75197927 | None:intergenic |
| TTATTGGTTGAAATGGATGT+TGG | 0.515770 | 2:-75196641 | None:intergenic |
| TTGACAAAATTCTGATCTGA+AGG | 0.516864 | 2:-75196947 | None:intergenic |
| CCCCGACAATCATCAAGCAT+TGG | 0.530465 | 2:-75196791 | None:intergenic |
| TTTAGGAGAGATGAAGAAAG+AGG | 0.538946 | 2:+75197018 | MsG0280010798.01.T01:CDS |
| AGGAACTCATCCACCCATGA+AGG | 0.539506 | 2:-75196698 | None:intergenic |
| GAAAAGCTTGTCTTGTGCAA+GGG | 0.539760 | 2:-75197926 | None:intergenic |
| CTGATCCAAAGAGAGTCAAA+AGG | 0.572655 | 2:+75197155 | MsG0280010798.01.T01:CDS |
| TTCGATGAAGACAACGTTGG+TGG | 0.575587 | 2:-75196914 | None:intergenic |
| TCCCAAACATGTCACCAAGT+TGG | 0.580152 | 2:+75196585 | MsG0280010798.01.T01:CDS |
| AGATATTTCATCACTAAACA+TGG | 0.586033 | 2:-75196876 | None:intergenic |
| GACATGTTTGGGATCTTAGG+AGG | 0.588767 | 2:-75196575 | None:intergenic |
| CTCATCAAGAGGCATTGAAG+AGG | 0.590362 | 2:+75199010 | MsG0280010798.01.T01:CDS |
| CAAGGCGAGGTGCTCATCGA+AGG | 0.594155 | 2:+75196735 | MsG0280010798.01.T01:CDS |
| CCACACAAGGGAATGTTAGA+GGG | 0.594577 | 2:-75196313 | None:intergenic |
| TCATCAAGAGGCATTGAAGA+GGG | 0.599782 | 2:+75199011 | MsG0280010798.01.T01:CDS |
| GAATCAGAACCCTTCATGGG+TGG | 0.607660 | 2:+75196688 | MsG0280010798.01.T01:CDS |
| ATTGAAATATGAACCTGATG+AGG | 0.608223 | 2:+75197054 | MsG0280010798.01.T01:CDS |
| TCAGAATCAGAACCCTTCAT+GGG | 0.609308 | 2:+75196685 | MsG0280010798.01.T01:CDS |
| TCTGATCTGAAGGACTCGAA+GGG | 0.610267 | 2:-75196937 | None:intergenic |
| TTTACATGCAGCTCATCAAG+AGG | 0.610732 | 2:+75198999 | MsG0280010798.01.T01:intron |
| ATGAGCACCTCGCCTTGCCG+AGG | 0.614435 | 2:-75196729 | None:intergenic |
| GGAACTCATCCACCCATGAA+GGG | 0.626852 | 2:-75196697 | None:intergenic |
| CAAATAGGCAATCAGCACAA+AGG | 0.647617 | 2:+75197582 | MsG0280010798.01.T01:CDS |
| GCGAGGTGCTCATCGAAGGT+CGG | 0.657525 | 2:+75196739 | MsG0280010798.01.T01:CDS |
| CAGCACAAAGGTCACGTGTG+AGG | 0.661809 | 2:+75197594 | MsG0280010798.01.T01:CDS |
| GCCTTGCCGAGGAAAAGTCG+AGG | 0.688307 | 2:-75196718 | None:intergenic |
| GATTGTCGGGGTAAACACGA+TGG | 0.708511 | 2:+75196803 | MsG0280010798.01.T01:CDS |
| GGGTTCGATGAAGACAACGT+TGG | 0.721008 | 2:-75196917 | None:intergenic |
| ATATTTCCAGAAACCACACA+AGG | 0.726763 | 2:-75196326 | None:intergenic |
| CCAATGCTTGATGATTGTCG+GGG | 0.745183 | 2:+75196791 | MsG0280010798.01.T01:CDS |
| TATTTCCAGAAACCACACAA+GGG | 0.750776 | 2:-75196325 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATATACATATTTATTAA+AGG | + | Chr2:75196342-75196361 | MsG0280010798.01.T01:five_prime_UTR | 10.0% |
| !!! | GTTTTATTAATAATAATTAC+TGG | + | Chr2:75198865-75198884 | MsG0280010798.01.T01:intron | 10.0% |
| !!! | TTTTGTTTTTTTAATTAACT+TGG | + | Chr2:75196283-75196302 | MsG0280010798.01.T01:five_prime_UTR | 10.0% |
| !! | AATTAATGAAAAACAATGAT+TGG | - | Chr2:75198891-75198910 | None:intergenic | 15.0% |
| !! | AGAATTAATATCAATATTGA+AGG | + | Chr2:75198529-75198548 | MsG0280010798.01.T01:intron | 15.0% |
| !! | AGATAAAAATTAAAACATGT+AGG | + | Chr2:75197205-75197224 | MsG0280010798.01.T01:intron | 15.0% |
| !! | ATATTTGAAAAATACTTAGT+TGG | - | Chr2:75198730-75198749 | None:intergenic | 15.0% |
| !! | ATGAAATGACAAAATAAAAA+TGG | + | Chr2:75198085-75198104 | MsG0280010798.01.T01:intron | 15.0% |
| !! | CTAAATAGTATTAACTATTA+AGG | - | Chr2:75198923-75198942 | None:intergenic | 15.0% |
| !! | TACTAATTAGTGAATTTATA+TGG | + | Chr2:75198004-75198023 | MsG0280010798.01.T01:intron | 15.0% |
| !! | TTTAAATCTGATAAGTAAAA+AGG | - | Chr2:75198787-75198806 | None:intergenic | 15.0% |
| !! | AAATTTAATAAGAGTGAAAC+AGG | + | Chr2:75198182-75198201 | MsG0280010798.01.T01:intron | 20.0% |
| !! | AAGTATTTGTACATTCTATT+TGG | - | Chr2:75198703-75198722 | None:intergenic | 20.0% |
| !! | AATTGAAATATTGTTGATCT+TGG | + | Chr2:75197451-75197470 | MsG0280010798.01.T01:intron | 20.0% |
| !! | ATTAACATACAATGTATGAA+TGG | - | Chr2:75196407-75196426 | None:intergenic | 20.0% |
| !! | TACAAAACTATATAACAAAC+AGG | - | Chr2:75196531-75196550 | None:intergenic | 20.0% |
| !! | TATATTAACTACTTTGTGAT+GGG | - | Chr2:75198298-75198317 | None:intergenic | 20.0% |
| !! | TTAACATACAATGTATGAAT+GGG | - | Chr2:75196406-75196425 | None:intergenic | 20.0% |
| !!! | ATGTTGGCATAATATTTTTT+TGG | - | Chr2:75196628-75196647 | None:intergenic | 20.0% |
| !!! | CATAATATTTTTTTGGTGTT+TGG | - | Chr2:75196621-75196640 | None:intergenic | 20.0% |
| ! | ACTAAAAAATTGTGTCATGT+GGG | - | Chr2:75197345-75197364 | None:intergenic | 25.0% |
| ! | ACTGTCCAAATATATATTGA+AGG | + | Chr2:75197807-75197826 | MsG0280010798.01.T01:intron | 25.0% |
| ! | AGATATTTCATCACTAAACA+TGG | - | Chr2:75196879-75196898 | None:intergenic | 25.0% |
| ! | ATATATATTTGGACAGTAGA+AGG | - | Chr2:75197804-75197823 | None:intergenic | 25.0% |
| ! | ATATTAACTACTTTGTGATG+GGG | - | Chr2:75198297-75198316 | None:intergenic | 25.0% |
| ! | ATGTTTAGTGATGAAATATC+TGG | + | Chr2:75196878-75196897 | MsG0280010798.01.T01:CDS | 25.0% |
| ! | ATTTGCAGTACTATAATATC+TGG | + | Chr2:75197713-75197732 | MsG0280010798.01.T01:intron | 25.0% |
| ! | GTATATTAACTACTTTGTGA+TGG | - | Chr2:75198299-75198318 | None:intergenic | 25.0% |
| ! | GTTAGTCAAAATAGTTTCTT+AGG | + | Chr2:75198430-75198449 | MsG0280010798.01.T01:intron | 25.0% |
| ! | TACTAAAAAATTGTGTCATG+TGG | - | Chr2:75197346-75197365 | None:intergenic | 25.0% |
| ! | TTCAGCCTTCAATATATATT+TGG | - | Chr2:75197815-75197834 | None:intergenic | 25.0% |
| !!! | CTCTTGAAATTTTGATACAT+AGG | - | Chr2:75198392-75198411 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGCATTAGAATCT+TGG | + | Chr2:75197559-75197578 | MsG0280010798.01.T01:intron | 25.0% |
| AAGAAGATGGAAAATGCTAA+TGG | + | Chr2:75199075-75199094 | MsG0280010798.01.T01:CDS | 30.0% | |
| ACTATTTAGACACATAGCTA+GGG | + | Chr2:75198934-75198953 | MsG0280010798.01.T01:intron | 30.0% | |
| ATTATTGTGCTTACTCGTTA+GGG | + | Chr2:75198552-75198571 | MsG0280010798.01.T01:intron | 30.0% | |
| ATTGAAATATGAACCTGATG+AGG | + | Chr2:75197054-75197073 | MsG0280010798.01.T01:CDS | 30.0% | |
| CAGTGCTATATATAGCTTAT+TGG | - | Chr2:75198121-75198140 | None:intergenic | 30.0% | |
| CCTTAACAACAACAAATTTG+AGG | + | Chr2:75196493-75196512 | MsG0280010798.01.T01:five_prime_UTR | 30.0% | |
| GAAGAATAAACAAGAGAAGA+AGG | + | Chr2:75196988-75197007 | MsG0280010798.01.T01:CDS | 30.0% | |
| GAGAAGAAGGAAAATGATTT+AGG | + | Chr2:75197001-75197020 | MsG0280010798.01.T01:CDS | 30.0% | |
| GTTTGTAGTGACAATGTTAT+TGG | - | Chr2:75196660-75196679 | None:intergenic | 30.0% | |
| TACTATTTAGACACATAGCT+AGG | + | Chr2:75198933-75198952 | MsG0280010798.01.T01:intron | 30.0% | |
| TATTAACTACTTTGTGATGG+GGG | - | Chr2:75198296-75198315 | None:intergenic | 30.0% | |
| TCTGTTTGAGAATCACATAT+TGG | - | Chr2:75199129-75199148 | None:intergenic | 30.0% | |
| TTATTAAAGGGTTGTGTTAG+AGG | + | Chr2:75196355-75196374 | MsG0280010798.01.T01:five_prime_UTR | 30.0% | |
| TTGACAAAATTCTGATCTGA+AGG | - | Chr2:75196950-75196969 | None:intergenic | 30.0% | |
| ! | GACAATGTTATTGGTTGAAA+TGG | - | Chr2:75196651-75196670 | None:intergenic | 30.0% |
| ! | TTATTGGTTGAAATGGATGT+TGG | - | Chr2:75196644-75196663 | None:intergenic | 30.0% |
| ! | TTTTGTACATCTCTCTCAAA+TGG | + | Chr2:75196544-75196563 | MsG0280010798.01.T01:exon | 30.0% |
| !! | AATTACCTTTTGACTCTCTT+TGG | - | Chr2:75197163-75197182 | None:intergenic | 30.0% |
| !! | CCTCAAATTTGTTGTTGTTA+AGG | - | Chr2:75196496-75196515 | None:intergenic | 30.0% |
| !!! | TTTTGGTGTTTGGAAAAATC+TGG | - | Chr2:75196611-75196630 | None:intergenic | 30.0% |
| AAAAGGAGCTAACTACTTTG+AGG | - | Chr2:75198770-75198789 | None:intergenic | 35.0% | |
| AGTCTACTAACATTTGAGCT+CGG | + | Chr2:75198325-75198344 | MsG0280010798.01.T01:intron | 35.0% | |
| ATATTTCCAGAAACCACACA+AGG | - | Chr2:75196329-75196348 | None:intergenic | 35.0% | |
| GAATCAGTTGCAAAACTCAA+AGG | - | Chr2:75197537-75197556 | None:intergenic | 35.0% | |
| GATTATTGTGCTTACTCGTT+AGG | + | Chr2:75198551-75198570 | MsG0280010798.01.T01:intron | 35.0% | |
| GCATTAGAATCTTGGCAAAT+AGG | + | Chr2:75197567-75197586 | MsG0280010798.01.T01:intron | 35.0% | |
| GGAGATAGAAAGATTAAGAC+AGG | + | Chr2:75199032-75199051 | MsG0280010798.01.T01:CDS | 35.0% | |
| TATGTTTGTGTGCGTTCAAA+TGG | - | Chr2:75198595-75198614 | None:intergenic | 35.0% | |
| TATTTCCAGAAACCACACAA+GGG | - | Chr2:75196328-75196347 | None:intergenic | 35.0% | |
| TGATCCAAAAATGCAACTCT+TGG | - | Chr2:75197853-75197872 | None:intergenic | 35.0% | |
| TTTAGGAGAGATGAAGAAAG+AGG | + | Chr2:75197018-75197037 | MsG0280010798.01.T01:CDS | 35.0% | |
| ! | ATCTCCAAGAGTTGCATTTT+TGG | + | Chr2:75197846-75197865 | MsG0280010798.01.T01:CDS | 35.0% |
| ! | CAAGACAAGCTTTTCAAAGA+TGG | + | Chr2:75197934-75197953 | MsG0280010798.01.T01:CDS | 35.0% |
| ! | GTGAATTTTCCTGTTTGCAT+TGG | - | Chr2:75197087-75197106 | None:intergenic | 35.0% |
| ! | TAGCATTTTCCATCTTCTTG+AGG | - | Chr2:75199074-75199093 | None:intergenic | 35.0% |
| !! | ATTTCATGCTTGACTTGTCA+TGG | - | Chr2:75198072-75198091 | None:intergenic | 35.0% |
| !! | GCATTGTTGTTGTTACTTTG+AGG | - | Chr2:75197112-75197131 | None:intergenic | 35.0% |
| !! | TTGAGTTTTGCAACTGATTC+TGG | + | Chr2:75197537-75197556 | MsG0280010798.01.T01:intron | 35.0% |
| !!! | ACATATTGGCTTTTGTGATG+GGG | - | Chr2:75199115-75199134 | None:intergenic | 35.0% |
| !!! | CACATATTGGCTTTTGTGAT+GGG | - | Chr2:75199116-75199135 | None:intergenic | 35.0% |
| !!! | TCACATATTGGCTTTTGTGA+TGG | - | Chr2:75199117-75199136 | None:intergenic | 35.0% |
| ATCAGAATCAGAACCCTTCA+TGG | + | Chr2:75196684-75196703 | MsG0280010798.01.T01:CDS | 40.0% | |
| CAAATAGGCAATCAGCACAA+AGG | + | Chr2:75197582-75197601 | MsG0280010798.01.T01:CDS | 40.0% | |
| CTGATCCAAAGAGAGTCAAA+AGG | + | Chr2:75197155-75197174 | MsG0280010798.01.T01:CDS | 40.0% | |
| GAAAAGCTTGTCTTGTGCAA+GGG | - | Chr2:75197929-75197948 | None:intergenic | 40.0% | |
| GCACTGTAGTTACTTGAAGT+TGG | + | Chr2:75198135-75198154 | MsG0280010798.01.T01:intron | 40.0% | |
| GGGCACATGATCACATAAAT+AGG | - | Chr2:75198276-75198295 | None:intergenic | 40.0% | |
| GTCTACTAACATTTGAGCTC+GGG | + | Chr2:75198326-75198345 | MsG0280010798.01.T01:intron | 40.0% | |
| GTGAAAGAATATGTACCCTG+TGG | + | Chr2:75198035-75198054 | MsG0280010798.01.T01:intron | 40.0% | |
| TCAGAATCAGAACCCTTCAT+GGG | + | Chr2:75196685-75196704 | MsG0280010798.01.T01:CDS | 40.0% | |
| TGAAAAGCTTGTCTTGTGCA+AGG | - | Chr2:75197930-75197949 | None:intergenic | 40.0% | |
| TGTGTGCAGTCTCATAACTA+TGG | - | Chr2:75198209-75198228 | None:intergenic | 40.0% | |
| TTGGAAAAATCTGGCCAACT+TGG | - | Chr2:75196602-75196621 | None:intergenic | 40.0% | |
| TTTACATGCAGCTCATCAAG+AGG | + | Chr2:75198999-75199018 | MsG0280010798.01.T01:intron | 40.0% | |
| ! | ACCAATGCTTGATGATTGTC+GGG | + | Chr2:75196790-75196809 | MsG0280010798.01.T01:CDS | 40.0% |
| ! | CACCAATGCTTGATGATTGT+CGG | + | Chr2:75196789-75196808 | MsG0280010798.01.T01:CDS | 40.0% |
| ! | TGACTTGTCATGGTCTCATT+AGG | - | Chr2:75198062-75198081 | None:intergenic | 40.0% |
| !! | TCATCAAGAGGCATTGAAGA+GGG | + | Chr2:75199011-75199030 | MsG0280010798.01.T01:CDS | 40.0% |
| !! | TTTTGTGATGGGGATGGTAA+GGG | - | Chr2:75199105-75199124 | None:intergenic | 40.0% |
| ACATTCCCTTGTGTGGTTTC+TGG | + | Chr2:75196320-75196339 | MsG0280010798.01.T01:five_prime_UTR | 45.0% | |
| ACCACACAAGGGAATGTTAG+AGG | - | Chr2:75196317-75196336 | None:intergenic | 45.0% | |
| ATGGTCTCATTAGGACCACA+GGG | - | Chr2:75198053-75198072 | None:intergenic | 45.0% | |
| CCACACAAGGGAATGTTAGA+GGG | - | Chr2:75196316-75196335 | None:intergenic | 45.0% | |
| CCATCAGAACCTCAAGAAGA+TGG | + | Chr2:75199062-75199081 | MsG0280010798.01.T01:CDS | 45.0% | |
| GCGTAGTGTAACTTCATTGC+AGG | + | Chr2:75197643-75197662 | MsG0280010798.01.T01:CDS | 45.0% | |
| GGTAGAAAGCCAATGCAAAC+AGG | + | Chr2:75197075-75197094 | MsG0280010798.01.T01:CDS | 45.0% | |
| TCCCAAACATGTCACCAAGT+TGG | + | Chr2:75196585-75196604 | MsG0280010798.01.T01:CDS | 45.0% | |
| TCTGATCTGAAGGACTCGAA+GGG | - | Chr2:75196940-75196959 | None:intergenic | 45.0% | |
| TTCGATGAAGACAACGTTGG+TGG | - | Chr2:75196917-75196936 | None:intergenic | 45.0% | |
| TTCTGATCTGAAGGACTCGA+AGG | - | Chr2:75196941-75196960 | None:intergenic | 45.0% | |
| ! | CCAATGCTTGATGATTGTCG+GGG | + | Chr2:75196791-75196810 | MsG0280010798.01.T01:CDS | 45.0% |
| ! | CCATCTTCTTGAGGTTCTGA+TGG | - | Chr2:75199065-75199084 | None:intergenic | 45.0% |
| ! | GACATGTTTGGGATCTTAGG+AGG | - | Chr2:75196578-75196597 | None:intergenic | 45.0% |
| ! | GCCAACTTGGTGACATGTTT+GGG | - | Chr2:75196589-75196608 | None:intergenic | 45.0% |
| ! | GGTGACATGTTTGGGATCTT+AGG | - | Chr2:75196581-75196600 | None:intergenic | 45.0% |
| ! | TGAGTTCCTCGACTTTTCCT+CGG | + | Chr2:75196712-75196731 | MsG0280010798.01.T01:CDS | 45.0% |
| !! | CATTGGCTTTCTACCTCATC+AGG | - | Chr2:75197070-75197089 | None:intergenic | 45.0% |
| !! | CTCATCAAGAGGCATTGAAG+AGG | + | Chr2:75199010-75199029 | MsG0280010798.01.T01:CDS | 45.0% |
| !! | CTTTTGTGATGGGGATGGTA+AGG | - | Chr2:75199106-75199125 | None:intergenic | 45.0% |
| !!! | ATTGGCTTTTGTGATGGGGA+TGG | - | Chr2:75199111-75199130 | None:intergenic | 45.0% |
| !! | AAATATACATATTTATTAAA+GGG | + | Chr2:75196343-75196362 | MsG0280010798.01.T01:five_prime_UTR | 5.0% |
| AGGAACTCATCCACCCATGA+AGG | - | Chr2:75196701-75196720 | None:intergenic | 50.0% | |
| CATGGTCTCATTAGGACCAC+AGG | - | Chr2:75198054-75198073 | None:intergenic | 50.0% | |
| CCCCGACAATCATCAAGCAT+TGG | - | Chr2:75196794-75196813 | None:intergenic | 50.0% | |
| CCCTCTAACATTCCCTTGTG+TGG | + | Chr2:75196313-75196332 | MsG0280010798.01.T01:five_prime_UTR | 50.0% | |
| GAATCAGAACCCTTCATGGG+TGG | + | Chr2:75196688-75196707 | MsG0280010798.01.T01:CDS | 50.0% | |
| GATTGTCGGGGTAAACACGA+TGG | + | Chr2:75196803-75196822 | MsG0280010798.01.T01:CDS | 50.0% | |
| GGAACTCATCCACCCATGAA+GGG | - | Chr2:75196700-75196719 | None:intergenic | 50.0% | |
| GGGTTCGATGAAGACAACGT+TGG | - | Chr2:75196920-75196939 | None:intergenic | 50.0% | |
| ! | GGCCAACTTGGTGACATGTT+TGG | - | Chr2:75196590-75196609 | None:intergenic | 50.0% |
| !! | GGAGCTAACTACTTTGAGGC+AGG | - | Chr2:75198766-75198785 | None:intergenic | 50.0% |
| CAGCACAAAGGTCACGTGTG+AGG | + | Chr2:75197594-75197613 | MsG0280010798.01.T01:CDS | 55.0% | |
| ! | TCCTCGACTTTTCCTCGGCA+AGG | + | Chr2:75196717-75196736 | MsG0280010798.01.T01:CDS | 55.0% |
| GCCTTGCCGAGGAAAAGTCG+AGG | - | Chr2:75196721-75196740 | None:intergenic | 60.0% | |
| ! | CAAGGCGAGGTGCTCATCGA+AGG | + | Chr2:75196735-75196754 | MsG0280010798.01.T01:CDS | 60.0% |
| ! | GACTTTTCCTCGGCAAGGCG+AGG | + | Chr2:75196722-75196741 | MsG0280010798.01.T01:CDS | 60.0% |
| ! | GCGAGGTGCTCATCGAAGGT+CGG | + | Chr2:75196739-75196758 | MsG0280010798.01.T01:CDS | 60.0% |
| ATGAGCACCTCGCCTTGCCG+AGG | - | Chr2:75196732-75196751 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 75196264 | 75199173 | 75196264 | ID=MsG0280010798.01;Name=MsG0280010798.01 |
| Chr2 | mRNA | 75196264 | 75199173 | 75196264 | ID=MsG0280010798.01.T01;Parent=MsG0280010798.01;Name=MsG0280010798.01.T01;_AED=0.44;_eAED=0.45;_QI=299|1|0.75|1|1|1|4|0|331 |
| Chr2 | exon | 75196264 | 75197176 | 75196264 | ID=MsG0280010798.01.T01:exon:11056;Parent=MsG0280010798.01.T01 |
| Chr2 | exon | 75197574 | 75197664 | 75197574 | ID=MsG0280010798.01.T01:exon:11057;Parent=MsG0280010798.01.T01 |
| Chr2 | exon | 75197829 | 75197955 | 75197829 | ID=MsG0280010798.01.T01:exon:11058;Parent=MsG0280010798.01.T01 |
| Chr2 | exon | 75199010 | 75199173 | 75199010 | ID=MsG0280010798.01.T01:exon:11059;Parent=MsG0280010798.01.T01 |
| Chr2 | five_prime_UTR | 75196264 | 75196562 | 75196264 | ID=MsG0280010798.01.T01:five_prime_utr;Parent=MsG0280010798.01.T01 |
| Chr2 | CDS | 75196563 | 75197176 | 75196563 | ID=MsG0280010798.01.T01:cds;Parent=MsG0280010798.01.T01 |
| Chr2 | CDS | 75197574 | 75197664 | 75197574 | ID=MsG0280010798.01.T01:cds;Parent=MsG0280010798.01.T01 |
| Chr2 | CDS | 75197829 | 75197955 | 75197829 | ID=MsG0280010798.01.T01:cds;Parent=MsG0280010798.01.T01 |
| Chr2 | CDS | 75199010 | 75199173 | 75199010 | ID=MsG0280010798.01.T01:cds;Parent=MsG0280010798.01.T01 |
| Gene Sequence |
| Protein sequence |
