AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011115.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011115.01.T01 MTR_2g099030 75.430 407 30 2 1 337 1 407 0.0 599
MsG0280011115.01.T01 MTR_2g087780 35.476 389 169 10 19 333 12 392 3.62e-62 203
MsG0280011115.01.T01 MTR_4g050190 32.061 393 188 8 13 333 3 388 2.06e-53 180
MsG0280011115.01.T01 MTR_7g490330 40.070 287 130 9 78 331 43 320 2.39e-52 176
MsG0280011115.01.T01 MTR_7g490350 36.095 338 135 8 66 331 36 364 3.67e-52 176
MsG0280011115.01.T01 MTR_7g090300 35.826 321 126 7 82 331 53 364 1.40e-51 175
MsG0280011115.01.T01 MTR_5g091980 37.324 284 131 7 82 331 48 318 1.62e-42 150
MsG0280011115.01.T01 MTR_4g112620 26.490 302 145 3 70 330 30 295 3.42e-34 127
MsG0280011115.01.T01 MTR_7g090320 28.333 360 167 10 50 326 26 377 5.81e-32 123
MsG0280011115.01.T01 MTR_7g090310 28.443 334 147 11 76 326 52 376 6.55e-31 120
MsG0280011115.01.T01 MTR_4g112630 40.136 147 82 2 70 215 26 167 1.38e-28 113
MsG0280011115.01.T01 MTR_4g112670 40.152 132 74 1 70 201 27 153 1.84e-27 110
MsG0280011115.01.T01 MTR_4g112650 40.152 132 74 1 70 201 26 152 9.33e-26 105
MsG0280011115.01.T01 MTR_2g058450 26.923 312 176 7 70 334 28 334 7.90e-25 103
MsG0280011115.01.T01 MTR_2g058430 37.975 79 49 0 144 222 54 132 3.71e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011115.01.T01 AT3G59530 55.138 399 97 4 10 337 11 398 3.01e-152 434
MsG0280011115.01.T01 AT3G59530 55.138 399 97 4 10 337 11 398 3.01e-152 434
MsG0280011115.01.T01 AT3G59530 55.138 399 97 4 10 337 11 398 3.01e-152 434
MsG0280011115.01.T01 AT5G22020 35.092 379 166 10 27 333 22 392 2.89e-60 198
MsG0280011115.01.T01 AT5G22020 35.092 379 166 10 27 333 22 392 2.89e-60 198
MsG0280011115.01.T01 AT5G22020 35.092 379 166 10 27 333 22 392 2.89e-60 198
MsG0280011115.01.T01 AT1G08470 33.081 396 179 13 18 337 5 390 5.09e-55 184
MsG0280011115.01.T01 AT3G57030 57.724 123 44 2 82 204 56 170 7.16e-41 147
MsG0280011115.01.T01 AT3G57030 43.089 123 67 2 206 326 243 364 8.64e-27 109
MsG0280011115.01.T01 AT3G57010 33.230 322 127 11 80 326 52 360 1.40e-39 144
MsG0280011115.01.T01 AT3G57020 31.562 320 135 10 80 326 51 359 5.89e-37 136
MsG0280011115.01.T01 AT2G41300 30.128 312 133 7 88 326 84 383 1.78e-35 133
MsG0280011115.01.T01 AT3G57020 29.688 320 127 10 80 326 51 345 1.91e-31 121
MsG0280011115.01.T01 AT2G41290 49.593 123 55 2 80 202 49 164 4.97e-29 115
MsG0280011115.01.T01 AT1G74020 39.167 120 66 3 82 201 38 150 9.06e-21 92.0
MsG0280011115.01.T01 AT1G74000 37.984 129 73 3 73 201 31 152 2.25e-20 90.5
MsG0280011115.01.T01 AT1G74010 27.609 297 163 9 73 326 28 315 6.96e-19 86.3

Find 84 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCGAAAATGAAGTATT+TGG 0.199215 2:+79730056 MsG0280011115.01.T01:CDS
TTCTTCATGACTTGTTTATA+TGG 0.232247 2:-79729987 None:intergenic
CATTCCACTGTTCCATCTTT+AGG 0.248214 2:-79731499 None:intergenic
GCCAACAAGCTCATTCTTAC+TGG 0.269587 2:-79731664 None:intergenic
TGCATATTATGGTCTTCTTA+TGG 0.279511 2:+79730646 MsG0280011115.01.T01:CDS
TTCTCATGTTTCCATTGCTT+TGG 0.287013 2:-79730560 None:intergenic
TACATAGCAGATGCATATTA+TGG 0.318723 2:+79730635 MsG0280011115.01.T01:CDS
TCATTCATTCTTACGTTGTC+TGG 0.331202 2:-79731544 None:intergenic
GGAGAAAGGTTTCATCTCTT+AGG 0.367718 2:-79729851 None:intergenic
ATAAACAAGTCATGAAGAAT+TGG 0.371511 2:+79729991 MsG0280011115.01.T01:CDS
AAGAGGAGAAAGGAAAGCTT+TGG 0.372961 2:+79731803 MsG0280011115.01.T01:CDS
AACGTAAGAATGAATGAAAA+AGG 0.383654 2:+79731550 MsG0280011115.01.T01:CDS
CTTCTTATGGTTGGACCAAA+TGG 0.385238 2:+79730659 MsG0280011115.01.T01:CDS
AACACGACCATCGGCTAAAC+CGG 0.389147 2:-79730123 None:intergenic
AAGATCATTTGCAAAGAGAA+TGG 0.401336 2:-79730723 None:intergenic
CCTAGTGGACCTAAATGAAA+AGG 0.405868 2:-79729927 None:intergenic
ATGACAGGCTAATGAAACTT+TGG 0.408963 2:+79731467 MsG0280011115.01.T01:intron
TATTATGGTCTTCTTATGGT+TGG 0.409388 2:+79730650 MsG0280011115.01.T01:CDS
ATCTTGATATTCACAAGAAC+GGG 0.427957 2:+79730741 MsG0280011115.01.T01:CDS
CTAATGAAACTTTGGATAGA+AGG 0.434236 2:+79731475 MsG0280011115.01.T01:CDS
CCATCGGCTAAACCGGTGTA+AGG 0.444345 2:-79730116 None:intergenic
GCAATAGATTGTTGTCGAAC+TGG 0.446574 2:+79731586 MsG0280011115.01.T01:CDS
CTTACGTTGTCTGGAAATCC+TGG 0.449914 2:-79731535 None:intergenic
TGGTCGTGTTGTCCGATGGA+TGG 0.450319 2:+79730136 MsG0280011115.01.T01:CDS
GGTGTAGCCAGTCCTCCATT+TGG 0.451029 2:-79730674 None:intergenic
GCCAGTAAGAATGAGCTTGT+TGG 0.451834 2:+79731663 MsG0280011115.01.T01:CDS
AGATCATTTGCAAAGAGAAT+GGG 0.452460 2:-79730722 None:intergenic
GGTCGTGTTGTCCGATGGAT+GGG 0.455520 2:+79730137 MsG0280011115.01.T01:CDS
TTAAGATTTGACAAAGAGAG+TGG 0.459619 2:+79730605 MsG0280011115.01.T01:CDS
CCTTCAACATGGGTTGCCAA+TGG 0.466610 2:-79730695 None:intergenic
GCTGGTTAGTGAAGTTAAAG+AGG 0.470251 2:+79731786 MsG0280011115.01.T01:CDS
TTGCAGTTGTCACATCCAAT+TGG 0.472198 2:+79730183 MsG0280011115.01.T01:CDS
GAATGCGTAGCTGACCTTCC+AGG 0.474792 2:+79731517 MsG0280011115.01.T01:CDS
GAGCTTGTTGGCTAAAGCTA+TGG 0.475927 2:+79731675 MsG0280011115.01.T01:CDS
ATTGCACTTCTTGATGATAA+CGG 0.476011 2:+79731718 MsG0280011115.01.T01:CDS
ATGAGCAGACTCGGACTTCA+CGG 0.478710 2:+79730026 MsG0280011115.01.T01:CDS
GAGAAAGGAAAGCTTTGGAT+TGG 0.479363 2:+79731808 MsG0280011115.01.T01:CDS
GTCAGTTGAGTTCGATAACA+TGG 0.480155 2:+79730085 MsG0280011115.01.T01:CDS
CTTTGTCAAATCTTAAACCA+AGG 0.491441 2:-79730598 None:intergenic
AGCTTGTTGGCTAAAGCTAT+GGG 0.498617 2:+79731676 MsG0280011115.01.T01:CDS
CGAAAATGAAGTATTTGGAC+CGG 0.503096 2:+79730061 MsG0280011115.01.T01:CDS
AAAACATGTGGGCGTCCCCT+TGG 0.510216 2:+79730581 MsG0280011115.01.T01:CDS
AGTCTGCTCATGTTGTCCTT+AGG 0.510827 2:-79730014 None:intergenic
TGGATAGAAGGTCCTAAAGA+TGG 0.515483 2:+79731487 MsG0280011115.01.T01:CDS
GTCGTGTTGTCCGATGGATG+GGG 0.520866 2:+79730138 MsG0280011115.01.T01:CDS
AGTGAAGTTAAAGAGGAGAA+AGG 0.523089 2:+79731793 MsG0280011115.01.T01:CDS
CCATTGGCAACCCATGTTGA+AGG 0.526859 2:+79730695 MsG0280011115.01.T01:CDS
TGGAGGACTGGCTACACCAT+TGG 0.527000 2:+79730679 MsG0280011115.01.T01:CDS
CTAGTGGACCTAAATGAAAA+GGG 0.529354 2:-79729926 None:intergenic
TTGTTACTCAAGACTTCTTG+AGG 0.540862 2:-79731610 None:intergenic
TTTGTCAAATCTTAAACCAA+GGG 0.542290 2:-79730597 None:intergenic
CCTTACACCGGTTTAGCCGA+TGG 0.545860 2:+79730116 MsG0280011115.01.T01:CDS
GGTGCAACGTTGTGTTTCAC+AGG 0.546534 2:-79729966 None:intergenic
CCGATGGTCGTGTTGTCCGA+TGG 0.555843 2:+79730132 MsG0280011115.01.T01:CDS
GAGTTCGATAACATGGGCCG+TGG 0.562804 2:+79730092 MsG0280011115.01.T01:CDS
AAGTCTTGAGTAACAATCCA+TGG 0.565030 2:+79731617 MsG0280011115.01.T01:CDS
GGTTGGACCAAATGGAGGAC+TGG 0.566119 2:+79730667 MsG0280011115.01.T01:CDS
AAGGACAACATGAGCAGACT+CGG 0.574652 2:+79730017 MsG0280011115.01.T01:CDS
GATCTTGATATTCACAAGAA+CGG 0.577423 2:+79730740 MsG0280011115.01.T01:CDS
GACTGAGAAGATTTGCATGA+GGG 0.580450 2:+79730520 MsG0280011115.01.T01:CDS
ATGGGCCGTGGCCCTTACAC+CGG 0.582691 2:+79730104 MsG0280011115.01.T01:CDS
ACTCTACAACTCCAAAGCAA+TGG 0.585049 2:+79730549 MsG0280011115.01.T01:CDS
CCATCGGACAACACGACCAT+CGG 0.587160 2:-79730132 None:intergenic
CTAAATTCATGTTCTCCTAG+TGG 0.592914 2:-79729942 None:intergenic
CTTATGGTTGGACCAAATGG+AGG 0.594581 2:+79730662 MsG0280011115.01.T01:CDS
AGAAGGCAAAGTGATGAAGC+TGG 0.599296 2:+79731768 MsG0280011115.01.T01:CDS
TTATCGAACTCAACTGACTC+CGG 0.603270 2:-79730080 None:intergenic
AGTCATGAAGAATTGGCCTA+AGG 0.608763 2:+79729998 MsG0280011115.01.T01:CDS
GGACTGAGAAGATTTGCATG+AGG 0.612890 2:+79730519 MsG0280011115.01.T01:intron
CTAAACCGGTGTAAGGGCCA+CGG 0.618440 2:-79730109 None:intergenic
TGGAAACATGAGAAAACATG+TGG 0.620861 2:+79730569 MsG0280011115.01.T01:CDS
TGAGTAACAATCCATGGTTG+AGG 0.621036 2:+79731623 MsG0280011115.01.T01:CDS
ACTGAGAAGATTTGCATGAG+GGG 0.622020 2:+79730521 MsG0280011115.01.T01:CDS
AGCTCATTCTTACTGGCAAG+CGG 0.627455 2:-79731657 None:intergenic
GAAGTTCTTGAAGATCGAGA+AGG 0.628335 2:+79731751 MsG0280011115.01.T01:CDS
CATCGGCTAAACCGGTGTAA+GGG 0.633079 2:-79730115 None:intergenic
CGTTGTCTGGAAATCCTGGA+AGG 0.633711 2:-79731531 None:intergenic
TCGTGTTGTCCGATGGATGG+GGG 0.655214 2:+79730139 MsG0280011115.01.T01:CDS
TTGTCAAATCTTAAACCAAG+GGG 0.656805 2:-79730596 None:intergenic
AAGTAAATACTCCTCAACCA+TGG 0.660467 2:-79731634 None:intergenic
TCAGTTGAGTTCGATAACAT+GGG 0.661205 2:+79730086 MsG0280011115.01.T01:CDS
AGGTCCTAAAGATGGAACAG+TGG 0.678364 2:+79731495 MsG0280011115.01.T01:CDS
GGAAACATGAGAAAACATGT+GGG 0.709710 2:+79730570 MsG0280011115.01.T01:CDS
GCTTGTTGGCTAAAGCTATG+GGG 0.726642 2:+79731677 MsG0280011115.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTAATATAAAATA+CGG - Chr2:79730893-79730912 None:intergenic 0.0%
!! AAAAAATCTACAATAAAATT+TGG + Chr2:79730906-79730925 MsG0280011115.01.T01:intron 10.0%
!!! ACATAATATTTTAGACTTAA+TGG - Chr2:79730447-79730466 None:intergenic 15.0%
!!! TAATGAATTAGTTATTTTGT+TGG - Chr2:79731438-79731457 None:intergenic 15.0%
!! AATCTACAATAAAATTTGGA+CGG + Chr2:79730910-79730929 MsG0280011115.01.T01:intron 20.0%
!! CTTAGCTGAAATAAATAAAT+AGG - Chr2:79730994-79731013 None:intergenic 20.0%
!! TCATTAAATTCTTTAATGAC+AGG + Chr2:79731452-79731471 MsG0280011115.01.T01:intron 20.0%
!!! ATTTTTGAGTTTTGTTTTGA+TGG + Chr2:79729902-79729921 MsG0280011115.01.T01:CDS 20.0%
!!! TGAAACTTGGTATTTTTAAA+AGG + Chr2:79730498-79730517 MsG0280011115.01.T01:intron 20.0%
! AAACAATAACACTCATCATA+AGG - Chr2:79731018-79731037 None:intergenic 25.0%
! AAATAAATAAATAGGATCCC+TGG - Chr2:79730986-79731005 None:intergenic 25.0%
! AACGTAAGAATGAATGAAAA+AGG + Chr2:79731550-79731569 MsG0280011115.01.T01:CDS 25.0%
! ATAAACAAGTCATGAAGAAT+TGG + Chr2:79729991-79730010 MsG0280011115.01.T01:CDS 25.0%
! GAGAAAATGCAAAATAAGTA+CGG - Chr2:79731249-79731268 None:intergenic 25.0%
! TGTAATACTTGAGGTTAAAT+GGG + Chr2:79731276-79731295 MsG0280011115.01.T01:intron 25.0%
! TTGTAATACTTGAGGTTAAA+TGG + Chr2:79731275-79731294 MsG0280011115.01.T01:intron 25.0%
! TTTGTCAAATCTTAAACCAA+GGG - Chr2:79730600-79730619 None:intergenic 25.0%
!! AATTTTATGTTGTTGGAGAA+AGG - Chr2:79729868-79729887 None:intergenic 25.0%
!! GAATTCGAAAATGAAGTATT+TGG + Chr2:79730056-79730075 MsG0280011115.01.T01:CDS 25.0%
!! TACATTGTGATCTTTTATCT+TGG + Chr2:79731317-79731336 MsG0280011115.01.T01:intron 25.0%
!! TAGCAAGAATTTTATGTTGT+TGG - Chr2:79729875-79729894 None:intergenic 25.0%
!!! CACTTTTTTATATTGTTGGA+AGG + Chr2:79731046-79731065 MsG0280011115.01.T01:intron 25.0%
!!! CGCTAAGGTTTTTTAAAAAA+TGG - Chr2:79731352-79731371 None:intergenic 25.0%
!!! TGCACACTTTTTTATATTGT+TGG + Chr2:79731042-79731061 MsG0280011115.01.T01:intron 25.0%
!!! TTCTTCATGACTTGTTTATA+TGG - Chr2:79729990-79730009 None:intergenic 25.0%
AAGATCATTTGCAAAGAGAA+TGG - Chr2:79730726-79730745 None:intergenic 30.0%
AGATCATTTGCAAAGAGAAT+GGG - Chr2:79730725-79730744 None:intergenic 30.0%
ATCATTTGACCTCAATTCAA+CGG - Chr2:79730856-79730875 None:intergenic 30.0%
ATCTTGATATTCACAAGAAC+GGG + Chr2:79730741-79730760 MsG0280011115.01.T01:CDS 30.0%
CTAATGAAACTTTGGATAGA+AGG + Chr2:79731475-79731494 MsG0280011115.01.T01:CDS 30.0%
CTTTGTCAAATCTTAAACCA+AGG - Chr2:79730601-79730620 None:intergenic 30.0%
GATCTTGATATTCACAAGAA+CGG + Chr2:79730740-79730759 MsG0280011115.01.T01:CDS 30.0%
TACATAGCAGATGCATATTA+TGG + Chr2:79730635-79730654 MsG0280011115.01.T01:CDS 30.0%
TATTATGGTCTTCTTATGGT+TGG + Chr2:79730650-79730669 MsG0280011115.01.T01:CDS 30.0%
TGCATATTATGGTCTTCTTA+TGG + Chr2:79730646-79730665 MsG0280011115.01.T01:CDS 30.0%
TTAAGATTTGACAAAGAGAG+TGG + Chr2:79730605-79730624 MsG0280011115.01.T01:CDS 30.0%
TTGTCAAATCTTAAACCAAG+GGG - Chr2:79730599-79730618 None:intergenic 30.0%
TTTATATTGTTGGAAGGAGA+AGG + Chr2:79731052-79731071 MsG0280011115.01.T01:intron 30.0%
! ATTGCACTTCTTGATGATAA+CGG + Chr2:79731718-79731737 MsG0280011115.01.T01:CDS 30.0%
! GAATGAAAAAGGACAGTTTT+GGG + Chr2:79731561-79731580 MsG0280011115.01.T01:CDS 30.0%
! TGAATGAAAAAGGACAGTTT+TGG + Chr2:79731560-79731579 MsG0280011115.01.T01:CDS 30.0%
!! GTTATTTTGTTGGACGAATT+TGG - Chr2:79731428-79731447 None:intergenic 30.0%
AAGTAAATACTCCTCAACCA+TGG - Chr2:79731637-79731656 None:intergenic 35.0%
AAGTCTTGAGTAACAATCCA+TGG + Chr2:79731617-79731636 MsG0280011115.01.T01:CDS 35.0%
AGTGAAGTTAAAGAGGAGAA+AGG + Chr2:79731793-79731812 MsG0280011115.01.T01:CDS 35.0%
AGTTAAAAACCTGCAATTGG+TGG - Chr2:79731200-79731219 None:intergenic 35.0%
ATAAATAGGATCCCTGGATT+CGG - Chr2:79730980-79730999 None:intergenic 35.0%
ATGACAGGCTAATGAAACTT+TGG + Chr2:79731467-79731486 MsG0280011115.01.T01:intron 35.0%
ATTGCAATGTGTCTCTCTAT+AGG - Chr2:79730318-79730337 None:intergenic 35.0%
CAAAACAACTCATGTTGTCT+TGG + Chr2:79731108-79731127 MsG0280011115.01.T01:intron 35.0%
CATTAGCATGAATGCACATA+TGG - Chr2:79730480-79730499 None:intergenic 35.0%
CTAAATTCATGTTCTCCTAG+TGG - Chr2:79729945-79729964 None:intergenic 35.0%
GCATTCATGCTAATGAAACT+TGG + Chr2:79730485-79730504 MsG0280011115.01.T01:intron 35.0%
GGAAACATGAGAAAACATGT+GGG + Chr2:79730570-79730589 MsG0280011115.01.T01:CDS 35.0%
TCAGTTGAGTTCGATAACAT+GGG + Chr2:79730086-79730105 MsG0280011115.01.T01:CDS 35.0%
TCATTCATTCTTACGTTGTC+TGG - Chr2:79731547-79731566 None:intergenic 35.0%
TCTGCAACTTGTAATACTTG+AGG + Chr2:79731267-79731286 MsG0280011115.01.T01:intron 35.0%
TGCAGTTAAAAACCTGCAAT+TGG - Chr2:79731203-79731222 None:intergenic 35.0%
TGGAAACATGAGAAAACATG+TGG + Chr2:79730569-79730588 MsG0280011115.01.T01:CDS 35.0%
TTCTCATGTTTCCATTGCTT+TGG - Chr2:79730563-79730582 None:intergenic 35.0%
TTGTTACTCAAGACTTCTTG+AGG - Chr2:79731613-79731632 None:intergenic 35.0%
! AATTGGTGGTTTCGGTAAAA+AGG - Chr2:79731186-79731205 None:intergenic 35.0%
! CAAGACAACATGAGTTGTTT+TGG - Chr2:79731110-79731129 None:intergenic 35.0%
! CGAAAATGAAGTATTTGGAC+CGG + Chr2:79730061-79730080 MsG0280011115.01.T01:CDS 35.0%
! CTAGTGGACCTAAATGAAAA+GGG - Chr2:79729929-79729948 None:intergenic 35.0%
! TCTTGATGATACTCACCAAT+TGG - Chr2:79730201-79730220 None:intergenic 35.0%
!! AATGGGTTTTCCTTCAACAT+GGG - Chr2:79730708-79730727 None:intergenic 35.0%
!! TTGATGGACCCTTTTCATTT+AGG + Chr2:79729918-79729937 MsG0280011115.01.T01:CDS 35.0%
!!! ACAACATGAGTTGTTTTGGT+AGG - Chr2:79731106-79731125 None:intergenic 35.0%
!!! GATGGTCTTGTTTTTCCTAA+TGG + Chr2:79731130-79731149 MsG0280011115.01.T01:intron 35.0%
AAACCTTAGCGACACGAAAT+TGG + Chr2:79731361-79731380 MsG0280011115.01.T01:intron 40.0%
AAGAGGAGAAAGGAAAGCTT+TGG + Chr2:79731803-79731822 MsG0280011115.01.T01:CDS 40.0%
ACAACTCATGTTGTCTTGGA+TGG + Chr2:79731112-79731131 MsG0280011115.01.T01:intron 40.0%
ACTCTACAACTCCAAAGCAA+TGG + Chr2:79730549-79730568 MsG0280011115.01.T01:CDS 40.0%
ACTGAGAAGATTTGCATGAG+GGG + Chr2:79730521-79730540 MsG0280011115.01.T01:CDS 40.0%
CATTCCACTGTTCCATCTTT+AGG - Chr2:79731502-79731521 None:intergenic 40.0%
CTTCTTATGGTTGGACCAAA+TGG + Chr2:79730659-79730678 MsG0280011115.01.T01:CDS 40.0%
GAAGTTCTTGAAGATCGAGA+AGG + Chr2:79731751-79731770 MsG0280011115.01.T01:CDS 40.0%
GACTGAGAAGATTTGCATGA+GGG + Chr2:79730520-79730539 MsG0280011115.01.T01:CDS 40.0%
GCAATAGATTGTTGTCGAAC+TGG + Chr2:79731586-79731605 MsG0280011115.01.T01:CDS 40.0%
GCTGCAGTATGATGTTGAAA+CGG - Chr2:79731395-79731414 None:intergenic 40.0%
GCTGGTTAGTGAAGTTAAAG+AGG + Chr2:79731786-79731805 MsG0280011115.01.T01:CDS 40.0%
GGAGAAAGGTTTCATCTCTT+AGG - Chr2:79729854-79729873 None:intergenic 40.0%
GTCAGTTGAGTTCGATAACA+TGG + Chr2:79730085-79730104 MsG0280011115.01.T01:CDS 40.0%
TAAATAGGATCCCTGGATTC+GGG - Chr2:79730979-79730998 None:intergenic 40.0%
TGAGTAACAATCCATGGTTG+AGG + Chr2:79731623-79731642 MsG0280011115.01.T01:CDS 40.0%
TGGATAGAAGGTCCTAAAGA+TGG + Chr2:79731487-79731506 MsG0280011115.01.T01:CDS 40.0%
TGGTAGGAGGATCATATCTA+AGG - Chr2:79731090-79731109 None:intergenic 40.0%
TTCGAGATTTGCACTCCATT+AGG - Chr2:79731148-79731167 None:intergenic 40.0%
TTGCAGTTGTCACATCCAAT+TGG + Chr2:79730183-79730202 MsG0280011115.01.T01:CDS 40.0%
! AAACCTGCAATTGGTGGTTT+CGG - Chr2:79731194-79731213 None:intergenic 40.0%
! AGTCATGAAGAATTGGCCTA+AGG + Chr2:79729998-79730017 MsG0280011115.01.T01:CDS 40.0%
! CCTAGTGGACCTAAATGAAA+AGG - Chr2:79729930-79729949 None:intergenic 40.0%
! CCTTTTCATTTAGGTCCACT+AGG + Chr2:79729927-79729946 MsG0280011115.01.T01:CDS 40.0%
! TTATCGAACTCAACTGACTC+CGG - Chr2:79730083-79730102 None:intergenic 40.0%
!! AGCTTGTTGGCTAAAGCTAT+GGG + Chr2:79731676-79731695 MsG0280011115.01.T01:CDS 40.0%
!! GAATGGGTTTTCCTTCAACA+TGG - Chr2:79730709-79730728 None:intergenic 40.0%
!! GAGAAAGGAAAGCTTTGGAT+TGG + Chr2:79731808-79731827 MsG0280011115.01.T01:CDS 40.0%
!! TGTTGATAGCCGTTGAATTG+AGG + Chr2:79730844-79730863 MsG0280011115.01.T01:intron 40.0%
!!! ACATGAGTTGTTTTGGTAGG+AGG - Chr2:79731103-79731122 None:intergenic 40.0%
!!! TGAAAAAGGACAGTTTTGGG+TGG + Chr2:79731564-79731583 MsG0280011115.01.T01:CDS 40.0%
AAATAGGATCCCTGGATTCG+GGG - Chr2:79730978-79730997 None:intergenic 45.0%
AAGGACAACATGAGCAGACT+CGG + Chr2:79730017-79730036 MsG0280011115.01.T01:CDS 45.0%
AGAAGGCAAAGTGATGAAGC+TGG + Chr2:79731768-79731787 MsG0280011115.01.T01:CDS 45.0%
AGCTCATTCTTACTGGCAAG+CGG - Chr2:79731660-79731679 None:intergenic 45.0%
AGGTCCTAAAGATGGAACAG+TGG + Chr2:79731495-79731514 MsG0280011115.01.T01:CDS 45.0%
AGTCTGCTCATGTTGTCCTT+AGG - Chr2:79730017-79730036 None:intergenic 45.0%
CTTACGTTGTCTGGAAATCC+TGG - Chr2:79731538-79731557 None:intergenic 45.0%
CTTATGGTTGGACCAAATGG+AGG + Chr2:79730662-79730681 MsG0280011115.01.T01:CDS 45.0%
GCCAACAAGCTCATTCTTAC+TGG - Chr2:79731667-79731686 None:intergenic 45.0%
GCCAGTAAGAATGAGCTTGT+TGG + Chr2:79731663-79731682 MsG0280011115.01.T01:CDS 45.0%
GCTTGTGTCAGTGAAGAAGA+TGG - Chr2:79730768-79730787 None:intergenic 45.0%
GGACGGTCATCTCAATTCAA+CGG + Chr2:79730927-79730946 MsG0280011115.01.T01:intron 45.0%
GGACTGAGAAGATTTGCATG+AGG + Chr2:79730519-79730538 MsG0280011115.01.T01:intron 45.0%
GGCTATCAACAATCTGACTC+TGG - Chr2:79730835-79730854 None:intergenic 45.0%
GGTTTCGGTAAAAAGGAGGA+AGG - Chr2:79731179-79731198 None:intergenic 45.0%
TGGTGGTTTCGGTAAAAAGG+AGG - Chr2:79731183-79731202 None:intergenic 45.0%
TTACCGAAACCACCAATTGC+AGG + Chr2:79731188-79731207 MsG0280011115.01.T01:intron 45.0%
TTGTTGGAAGGAGAAGGAAC+AGG + Chr2:79731058-79731077 MsG0280011115.01.T01:intron 45.0%
! AGTCCAATTTCGTGTCGCTA+AGG - Chr2:79731367-79731386 None:intergenic 45.0%
! GCTTGTTGGCTAAAGCTATG+GGG + Chr2:79731677-79731696 MsG0280011115.01.T01:CDS 45.0%
!! GAGCTTGTTGGCTAAAGCTA+TGG + Chr2:79731675-79731694 MsG0280011115.01.T01:CDS 45.0%
ATGAGCAGACTCGGACTTCA+CGG + Chr2:79730026-79730045 MsG0280011115.01.T01:CDS 50.0%
CAAGTTGTTCCCCCATCCAT+CGG - Chr2:79730151-79730170 None:intergenic 50.0%
CCATTGGCAACCCATGTTGA+AGG + Chr2:79730695-79730714 MsG0280011115.01.T01:CDS 50.0%
CGTTGTCTGGAAATCCTGGA+AGG - Chr2:79731534-79731553 None:intergenic 50.0%
GATGGGGGAACAACTTGGTT+GGG + Chr2:79730154-79730173 MsG0280011115.01.T01:CDS 50.0%
GGTGCAACGTTGTGTTTCAC+AGG - Chr2:79729969-79729988 None:intergenic 50.0%
TGGAAGGAGAAGGAACAGGT+AGG + Chr2:79731062-79731081 MsG0280011115.01.T01:intron 50.0%
! AACACGACCATCGGCTAAAC+CGG - Chr2:79730126-79730145 None:intergenic 50.0%
! ATGCATTGATCCCCGAATCC+AGG + Chr2:79730965-79730984 MsG0280011115.01.T01:intron 50.0%
! CATCGGCTAAACCGGTGTAA+GGG - Chr2:79730118-79730137 None:intergenic 50.0%
! CCTTCAACATGGGTTGCCAA+TGG - Chr2:79730698-79730717 None:intergenic 50.0%
! TGCATTGATCCCCGAATCCA+GGG + Chr2:79730966-79730985 MsG0280011115.01.T01:intron 50.0%
AAAACATGTGGGCGTCCCCT+TGG + Chr2:79730581-79730600 MsG0280011115.01.T01:CDS 55.0%
CCATCGGACAACACGACCAT+CGG - Chr2:79730135-79730154 None:intergenic 55.0%
CGATGGATGGGGGAACAACT+TGG + Chr2:79730149-79730168 MsG0280011115.01.T01:CDS 55.0%
CTAAACCGGTGTAAGGGCCA+CGG - Chr2:79730112-79730131 None:intergenic 55.0%
GAATGCGTAGCTGACCTTCC+AGG + Chr2:79731517-79731536 MsG0280011115.01.T01:CDS 55.0%
GAGTTCGATAACATGGGCCG+TGG + Chr2:79730092-79730111 MsG0280011115.01.T01:CDS 55.0%
GGATGGGGGAACAACTTGGT+TGG + Chr2:79730153-79730172 MsG0280011115.01.T01:CDS 55.0%
GGTCGTGTTGTCCGATGGAT+GGG + Chr2:79730137-79730156 MsG0280011115.01.T01:CDS 55.0%
GGTGTAGCCAGTCCTCCATT+TGG - Chr2:79730677-79730696 None:intergenic 55.0%
GGTTGGACCAAATGGAGGAC+TGG + Chr2:79730667-79730686 MsG0280011115.01.T01:CDS 55.0%
GTCGTGTTGTCCGATGGATG+GGG + Chr2:79730138-79730157 MsG0280011115.01.T01:CDS 55.0%
TCGTGTTGTCCGATGGATGG+GGG + Chr2:79730139-79730158 MsG0280011115.01.T01:CDS 55.0%
TGGTCGTGTTGTCCGATGGA+TGG + Chr2:79730136-79730155 MsG0280011115.01.T01:CDS 55.0%
! CCATCGGCTAAACCGGTGTA+AGG - Chr2:79730119-79730138 None:intergenic 55.0%
!! CCTTACACCGGTTTAGCCGA+TGG + Chr2:79730116-79730135 MsG0280011115.01.T01:CDS 55.0%
!! TGGAGGACTGGCTACACCAT+TGG + Chr2:79730679-79730698 MsG0280011115.01.T01:CDS 55.0%
CCGATGGTCGTGTTGTCCGA+TGG + Chr2:79730132-79730151 MsG0280011115.01.T01:CDS 60.0%
ATGGGCCGTGGCCCTTACAC+CGG + Chr2:79730104-79730123 MsG0280011115.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79729834 79731873 79729834 ID=MsG0280011115.01;Name=MsG0280011115.01
Chr2 mRNA 79729834 79731873 79729834 ID=MsG0280011115.01.T01;Parent=MsG0280011115.01;Name=MsG0280011115.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|1|1|3|0|337
Chr2 exon 79729834 79730204 79729834 ID=MsG0280011115.01.T01:exon:10036;Parent=MsG0280011115.01.T01
Chr2 exon 79730520 79730762 79730520 ID=MsG0280011115.01.T01:exon:10037;Parent=MsG0280011115.01.T01
Chr2 exon 79731474 79731873 79731474 ID=MsG0280011115.01.T01:exon:10038;Parent=MsG0280011115.01.T01
Chr2 CDS 79729834 79730204 79729834 ID=MsG0280011115.01.T01:cds;Parent=MsG0280011115.01.T01
Chr2 CDS 79730520 79730762 79730520 ID=MsG0280011115.01.T01:cds;Parent=MsG0280011115.01.T01
Chr2 CDS 79731474 79731873 79731474 ID=MsG0280011115.01.T01:cds;Parent=MsG0280011115.01.T01
Gene Sequence

>MsG0280011115.01.T01

ATGGAGAAGAAAAACTTCCTAAGAGATGAAACCTTTCTCCAACAACATAAAATTCTTGCTATATTTCTATTTTTGAGTTTTGTTTTGATGGACCCTTTTCATTTAGGTCCACTAGGAGAACATGAATTTAGACCTGTGAAACACAACGTTGCACCATATAAACAAGTCATGAAGAATTGGCCTAAGGACAACATGAGCAGACTCGGACTTCACGGAAAATTAGAATTCGAAAATGAAGTATTTGGACCGGAGTCAGTTGAGTTCGATAACATGGGCCGTGGCCCTTACACCGGTTTAGCCGATGGTCGTGTTGTCCGATGGATGGGGGAACAACTTGGTTGGGAAACTTTTGCAGTTGTCACATCCAATTGGACTGAGAAGATTTGCATGAGGGGAAATGACTCTACAACTCCAAAGCAATGGAAACATGAGAAAACATGTGGGCGTCCCCTTGGTTTAAGATTTGACAAAGAGAGTGGAGATTTATACATAGCAGATGCATATTATGGTCTTCTTATGGTTGGACCAAATGGAGGACTGGCTACACCATTGGCAACCCATGTTGAAGGAAAACCCATTCTCTTTGCAAATGATCTTGATATTCACAAGAACGGGCTAATGAAACTTTGGATAGAAGGTCCTAAAGATGGAACAGTGGAATGCGTAGCTGACCTTCCAGGATTTCCAGACAACGTAAGAATGAATGAAAAAGGACAGTTTTGGGTGGCAATAGATTGTTGTCGAACTGGACCTCAAGAAGTCTTGAGTAACAATCCATGGTTGAGGAGTATTTACTTCCGCTTGCCAGTAAGAATGAGCTTGTTGGCTAAAGCTATGGGGATGAAAATGTACACAATGATTGCACTTCTTGATGATAACGGAAAGATTCTTGAAGTTCTTGAAGATCGAGAAGGCAAAGTGATGAAGCTGGTTAGTGAAGTTAAAGAGGAGAAAGGAAAGCTTTGGATTGGAACAGTAGCTCATAATCACATCTCCACCTTACCTTACCCTTAA
Protein sequence

>MsG0280011115.01.T01

MEKKNFLRDETFLQQHKILAIFLFLSFVLMDPFHLGPLGEHEFRPVKHNVAPYKQVMKNWPKDNMSRLGLHGKLEFENEVFGPESVEFDNMGRGPYTGLADGRVVRWMGEQLGWETFAVVTSNWTEKICMRGNDSTTPKQWKHEKTCGRPLGLRFDKESGDLYIADAYYGLLMVGPNGGLATPLATHVEGKPILFANDLDIHKNGLMKLWIEGPKDGTVECVADLPGFPDNVRMNEKGQFWVAIDCCRTGPQEVLSNNPWLRSIYFRLPVRMSLLAKAMGMKMYTMIALLDDNGKILEVLEDREGKVMKLVSEVKEEKGKLWIGTVAHNHISTLPYP*