AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011361.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011361.01.T01 MTR_2g102730 46.795 156 46 3 3 125 91 242 1.31e-29 115
MsG0280011361.01.T01 MTR_2g102730 100.000 31 0 0 130 160 383 413 6.74e-13 68.2
MsG0280011361.01.T01 MTR_4g011530 39.286 168 41 3 3 125 111 262 1.29e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011361.01.T01 AT3G15570 38.312 154 62 5 3 125 106 257 9.72e-20 88.6

Find 43 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGATTCTTTCCAAATTT+TGG 0.021519 2:-82969955 MsG0280011361.01.T01:CDS
GATGAAGCTGAAACTGAATT+TGG 0.156976 2:-82971687 MsG0280011361.01.T01:CDS
AGCATCTGCTATAAAATTCT+TGG 0.247446 2:+82971228 None:intergenic
TCTCAGTTTGTTGCACTTGC+TGG 0.262022 2:-82973243 MsG0280011361.01.T01:intron
AGGACAGTTCATGTTGTTCT+TGG 0.284962 2:-82970071 MsG0280011361.01.T01:CDS
TTGATGTTGAGCTTGTTATT+AGG 0.338527 2:-82973387 MsG0280011361.01.T01:CDS
ATGAAGCTGAAACTGAATTT+GGG 0.381070 2:-82971686 MsG0280011361.01.T01:CDS
GATCTTGAGATCGAATTTCA+TGG 0.382920 2:-82973476 MsG0280011361.01.T01:CDS
GAAGCTACAAAAGTTAGAAT+TGG 0.389536 2:-82970039 MsG0280011361.01.T01:CDS
ATAACAAGCTCAACATCAAA+AGG 0.396893 2:+82973391 None:intergenic
GCTGAAACTGAATTTGGGTT+TGG 0.417674 2:-82971681 MsG0280011361.01.T01:CDS
ACAGTGAAAGCCTCTCTATC+AGG 0.425747 2:+82971582 None:intergenic
TTGTTATTAGGTTGGTTAAG+AGG 0.429280 2:-82973375 MsG0280011361.01.T01:CDS
CATGGAATGGAATCTTTGTC+TGG 0.430911 2:+82973562 None:intergenic
GATCATGATGGAGTTAAAAC+TGG 0.446409 2:-82973341 MsG0280011361.01.T01:intron
CTTCTTTCAGTCATACTTGT+GGG 0.454989 2:-82973416 MsG0280011361.01.T01:CDS
TCAGTAGCTCTTGCATGGTT+AGG 0.455773 2:+82973213 None:intergenic
GTGGAAGAAGGAATGTCATC+TGG 0.473381 2:+82969990 None:intergenic
TGTTGAGCTTGTTATTAGGT+TGG 0.485405 2:-82973383 MsG0280011361.01.T01:CDS
GTTTGGAAGGCAAACACCTA+TGG 0.502755 2:-82971664 MsG0280011361.01.T01:CDS
CATGCAAGAGCTACTGATGA+TGG 0.510855 2:-82973207 MsG0280011361.01.T01:CDS
AAACTGAATTTGGGTTTGGA+AGG 0.516582 2:-82971677 MsG0280011361.01.T01:CDS
AAAGAAAGTGATGTGGAAGA+AGG 0.516651 2:+82969978 None:intergenic
TGGTGGAAGAACACTGACTA+AGG 0.524858 2:+82973582 None:intergenic
AAAAGTAGACTCCTCATAAG+TGG 0.528795 2:-82971618 MsG0280011361.01.T01:CDS
ATGAAATTCGATCTCAAGAT+CGG 0.533802 2:+82973478 None:intergenic
ACCATGTTAGCTGTTTAAGA+AGG 0.534433 2:+82973524 None:intergenic
TACTTTAAGATAAGTGTCAA+TGG 0.534706 2:+82973173 None:intergenic
AAGGAGGAAGTTGCATGGAA+TGG 0.540539 2:+82973549 None:intergenic
GCCTTCTTAAACAGCTAACA+TGG 0.562378 2:-82973525 MsG0280011361.01.T01:CDS
TAACAAGCTCAACATCAAAA+GGG 0.570981 2:+82973392 None:intergenic
CCTTCTTTCAGTCATACTTG+TGG 0.572660 2:-82973417 MsG0280011361.01.T01:CDS
CATCATCAGTAGCTCTTGCA+TGG 0.574138 2:+82973208 None:intergenic
TTTATTAAAGCATCGGAGAG+AGG 0.583048 2:-82971724 MsG0280011361.01.T01:intron
GCTGTTTAAGAAGGCGAAGG+AGG 0.584337 2:+82973533 None:intergenic
ATCAATGAAAGAAAGTGATG+TGG 0.584615 2:+82969971 None:intergenic
GGACATGAAAACTAGTACTG+TGG 0.589920 2:-82971643 MsG0280011361.01.T01:CDS
CCACAAGTATGACTGAAAGA+AGG 0.608970 2:+82973417 None:intergenic
AAATCTCTGTCCTGATAGAG+AGG 0.609814 2:-82971592 MsG0280011361.01.T01:CDS
TTAGCTGTTTAAGAAGGCGA+AGG 0.622177 2:+82973530 None:intergenic
GCTAACAATAGTCTCACTTG+TGG 0.631711 2:-82970017 MsG0280011361.01.T01:CDS
AGGCGAAGGAGGAAGTTGCA+TGG 0.639865 2:+82973544 None:intergenic
GGAATGGAATCTTTGTCTGG+TGG 0.645080 2:+82973565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATAAATATATATCTATA+AGG + Chr2:82971194-82971213 None:intergenic 10.0%
!! ATGTATTTGTGTTATAAATA+GGG + Chr2:82972546-82972565 None:intergenic 15.0%
!! TAAATATATATCTATAAGGA+AGG + Chr2:82971190-82971209 None:intergenic 15.0%
!! TAAGAAAGAAATAAGTATTA+AGG - Chr2:82970553-82970572 MsG0280011361.01.T01:intron 15.0%
!! TATGTATTTGTGTTATAAAT+AGG + Chr2:82972547-82972566 None:intergenic 15.0%
!!! ACAAATCATTTTAAAACAAA+TGG + Chr2:82972171-82972190 None:intergenic 15.0%
!!! AATTTTTCATTACAAGACTA+TGG - Chr2:82972280-82972299 MsG0280011361.01.T01:intron 20.0%
!!! ATTGATTCTTTCCAAATTTT+GGG - Chr2:82973603-82973622 MsG0280011361.01.T01:CDS 20.0%
!!! CAGTTATATATGTTTTAACT+AGG + Chr2:82972594-82972613 None:intergenic 20.0%
!!! TATACTTGTAAAGTCAATTT+TGG + Chr2:82970912-82970931 None:intergenic 20.0%
!!! TCACTATTTATTTTTGCAAT+AGG - Chr2:82971423-82971442 MsG0280011361.01.T01:intron 20.0%
!!! TTATGAGACAAATTTTTTGA+TGG - Chr2:82972722-82972741 MsG0280011361.01.T01:intron 20.0%
!!! TTGTTTGTTTTTTCATCTAA+AGG - Chr2:82970945-82970964 MsG0280011361.01.T01:intron 20.0%
! AATGTAAGATAGAGATCTAT+TGG - Chr2:82972055-82972074 MsG0280011361.01.T01:intron 25.0%
! ACAAAATTCCAAATCTAGAT+AGG - Chr2:82970990-82971009 MsG0280011361.01.T01:intron 25.0%
! AGAAGAAAAGTTTCTTCAAA+TGG - Chr2:82971798-82971817 MsG0280011361.01.T01:intron 25.0%
! ATAGTCTTTGTACAGTATAT+GGG - Chr2:82972798-82972817 MsG0280011361.01.T01:intron 25.0%
! ATTCAAGTAACATACCATTA+AGG - Chr2:82971245-82971264 MsG0280011361.01.T01:CDS 25.0%
! GAAAGAAATAAGTATTAAGG+AGG - Chr2:82970556-82970575 MsG0280011361.01.T01:intron 25.0%
! GTTTATTGTCTAAATACTGA+TGG - Chr2:82972657-82972676 MsG0280011361.01.T01:intron 25.0%
! TCAATCTTCATGATTGAAAT+TGG - Chr2:82972895-82972914 MsG0280011361.01.T01:intron 25.0%
! TGAAAAATTATACAGACTCT+TGG + Chr2:82972269-82972288 None:intergenic 25.0%
! TGGAATGAATTCAATAAGAT+CGG - Chr2:82972075-82972094 MsG0280011361.01.T01:intron 25.0%
!! AACTTAAAGTTTGTTCTGAT+TGG - Chr2:82972220-82972239 MsG0280011361.01.T01:intron 25.0%
!! AGAAGAAATTAATGTGCTTT+TGG + Chr2:82971223-82971242 None:intergenic 25.0%
!! CACACAAGAAAACATTTTAT+AGG + Chr2:82970600-82970619 None:intergenic 25.0%
!! CTATAAAATGTTTTCTTGTG+TGG - Chr2:82970598-82970617 MsG0280011361.01.T01:intron 25.0%
!! TAATTCTTTCTAAAGATCTC+AGG - Chr2:82970440-82970459 MsG0280011361.01.T01:intron 25.0%
!! TTGATTCTTTCCAAATTTTG+GGG - Chr2:82973604-82973623 MsG0280011361.01.T01:CDS 25.0%
!!! ACAAATTTTTTGATGGATCT+CGG - Chr2:82972729-82972748 MsG0280011361.01.T01:intron 25.0%
!!! ACTTGCTTTTATTAAAGCAT+CGG - Chr2:82971826-82971845 MsG0280011361.01.T01:intron 25.0%
!!! CATTGATTCTTTCCAAATTT+TGG - Chr2:82973602-82973621 MsG0280011361.01.T01:CDS 25.0%
!!! GTTGTTATAGAGTGTTTTAT+TGG - Chr2:82972016-82972035 MsG0280011361.01.T01:intron 25.0%
!!! TACTTTAAGATAAGTGTCAA+TGG + Chr2:82970387-82970406 None:intergenic 25.0%
!!! TATCTAGATTTGGAATTTTG+TGG + Chr2:82970991-82971010 None:intergenic 25.0%
AACTCATTGCTATGCATTTA+AGG + Chr2:82973189-82973208 None:intergenic 30.0%
AAGTAACATACCATTAAGGT+TGG - Chr2:82971249-82971268 MsG0280011361.01.T01:CDS 30.0%
AGAAATAAGTATTAAGGAGG+AGG - Chr2:82970559-82970578 MsG0280011361.01.T01:intron 30.0%
AGCATCACTCAAATTGTTAA+GGG - Chr2:82972428-82972447 MsG0280011361.01.T01:intron 30.0%
AGCATCTGCTATAAAATTCT+TGG + Chr2:82972332-82972351 None:intergenic 30.0%
ATAACAAGCTCAACATCAAA+AGG + Chr2:82970169-82970188 None:intergenic 30.0%
ATCAATGAAAGAAAGTGATG+TGG + Chr2:82973589-82973608 None:intergenic 30.0%
ATGAAATTCGATCTCAAGAT+CGG + Chr2:82970082-82970101 None:intergenic 30.0%
ATGAAGCTGAAACTGAATTT+GGG - Chr2:82971871-82971890 MsG0280011361.01.T01:intron 30.0%
ATGATCCATTTCAGTAAAAC+AGG + Chr2:82971106-82971125 None:intergenic 30.0%
CAGTATTTAGACAATAAACC+TGG + Chr2:82972656-82972675 None:intergenic 30.0%
CATAGTCTTTGTACAGTATA+TGG - Chr2:82972797-82972816 MsG0280011361.01.T01:intron 30.0%
CATATACTGTACAAAGACTA+TGG + Chr2:82972799-82972818 None:intergenic 30.0%
GAAGCTACAAAAGTTAGAAT+TGG - Chr2:82973518-82973537 MsG0280011361.01.T01:CDS 30.0%
GGAATGAATTCAATAAGATC+GGG - Chr2:82972076-82972095 MsG0280011361.01.T01:intron 30.0%
TAACAAGCTCAACATCAAAA+GGG + Chr2:82970168-82970187 None:intergenic 30.0%
TAGCATCACTCAAATTGTTA+AGG - Chr2:82972427-82972446 MsG0280011361.01.T01:intron 30.0%
TCATGATTGAAATTGGCATT+AGG - Chr2:82972902-82972921 MsG0280011361.01.T01:intron 30.0%
TCTAATATGATGTCAAAGCT+TGG - Chr2:82971159-82971178 MsG0280011361.01.T01:intron 30.0%
TGCATAAAAAATGTTCAGTG+TGG + Chr2:82973105-82973124 None:intergenic 30.0%
TTCAGAACAAATTTCTTTCC+AGG - Chr2:82973466-82973485 MsG0280011361.01.T01:CDS 30.0%
TTTGGTTAAAGTTGCTAAGT+TGG - Chr2:82970245-82970264 MsG0280011361.01.T01:intron 30.0%
! CAATCAACATTTTCTCTACA+TGG - Chr2:82971034-82971053 MsG0280011361.01.T01:intron 30.0%
! GTGATATTTTCCATGGATTT+TGG + Chr2:82973083-82973102 None:intergenic 30.0%
! TGATTCTTTCCAAATTTTGG+GGG - Chr2:82973605-82973624 MsG0280011361.01.T01:CDS 30.0%
! TTAATCTCTAGAGAGTAAGT+TGG + Chr2:82973341-82973360 None:intergenic 30.0%
!! AAAGTCAATTTTGGTGAAGT+CGG + Chr2:82970903-82970922 None:intergenic 30.0%
!! ATGTTTTGGGTATGGAAATA+AGG + Chr2:82972617-82972636 None:intergenic 30.0%
!! TGGTTAAGAGGTTTTTGATT+TGG - Chr2:82970194-82970213 MsG0280011361.01.T01:intron 30.0%
!! TGTTTTATTGGAGTTAGACT+TGG - Chr2:82972028-82972047 MsG0280011361.01.T01:intron 30.0%
!! TTGATGTTGAGCTTGTTATT+AGG - Chr2:82970170-82970189 MsG0280011361.01.T01:intron 30.0%
!! TTGTTATTAGGTTGGTTAAG+AGG - Chr2:82970182-82970201 MsG0280011361.01.T01:intron 30.0%
!!! CAAATTTTTTGATGGATCTC+GGG - Chr2:82972730-82972749 MsG0280011361.01.T01:intron 30.0%
!!! GTTTTTGATTTGGATCATGA+TGG - Chr2:82970204-82970223 MsG0280011361.01.T01:intron 30.0%
!!! TTGTTTTGGCTGCAATAATT+TGG + Chr2:82972406-82972425 None:intergenic 30.0%
AAAACTGAAGAAGACGTTAC+AGG - Chr2:82971727-82971746 MsG0280011361.01.T01:intron 35.0%
AAAAGTAGACTCCTCATAAG+TGG - Chr2:82971939-82971958 MsG0280011361.01.T01:intron 35.0%
AAAGAAAGTGATGTGGAAGA+AGG + Chr2:82973582-82973601 None:intergenic 35.0%
AAGACGAACACACAAAACAT+TGG + Chr2:82973442-82973461 None:intergenic 35.0%
AATCAAGAGATATCGTTCGT+CGG - Chr2:82970851-82970870 MsG0280011361.01.T01:intron 35.0%
ACCATGTTAGCTGTTTAAGA+AGG + Chr2:82970036-82970055 None:intergenic 35.0%
ACTATTGGCAACTTTCCATT+AGG - Chr2:82973137-82973156 MsG0280011361.01.T01:intron 35.0%
ACTCACATATATGCGTTTGT+AGG - Chr2:82970805-82970824 MsG0280011361.01.T01:intron 35.0%
AGACACATGTACAGCTTATA+TGG - Chr2:82972768-82972787 MsG0280011361.01.T01:intron 35.0%
AGATTTAGATTGCATGCTGT+TGG + Chr2:82971367-82971386 None:intergenic 35.0%
AGGACAGTTATAGTTATGTG+TGG + Chr2:82972574-82972593 None:intergenic 35.0%
AGTCAAGACATCGGTAATTA+TGG + Chr2:82971334-82971353 None:intergenic 35.0%
AGTTGCCAATAGTGAAATTC+TGG + Chr2:82973130-82973149 None:intergenic 35.0%
ATAAGGAAGTGAAACTTCCA+AGG + Chr2:82973233-82973252 None:intergenic 35.0%
ATTCCATTCAGTCAAGACAT+CGG + Chr2:82971343-82971362 None:intergenic 35.0%
ATTGTTTCATGTGTGTTCAC+CGG - Chr2:82970776-82970795 MsG0280011361.01.T01:intron 35.0%
CAGATGTCCATATTTAAGCT+CGG + Chr2:82971303-82971322 None:intergenic 35.0%
CAGTCTGTATCTCATCTAAA+TGG - Chr2:82971394-82971413 MsG0280011361.01.T01:intron 35.0%
CATACAAAACTGAGTTATGC+AGG + Chr2:82972113-82972132 None:intergenic 35.0%
CCATAGCTCAAATTATTCCA+CGG + Chr2:82973312-82973331 None:intergenic 35.0%
CGTGGAATAATTTGAGCTAT+GGG - Chr2:82973310-82973329 MsG0280011361.01.T01:intron 35.0%
CTATTGGCAACTTTCCATTA+GGG - Chr2:82973138-82973157 MsG0280011361.01.T01:intron 35.0%
CTTCTTTCAGTCATACTTGT+GGG - Chr2:82970141-82970160 MsG0280011361.01.T01:intron 35.0%
GACTAGATGTTATTGAGCTA+TGG - Chr2:82973262-82973281 MsG0280011361.01.T01:intron 35.0%
GATCTTGAGATCGAATTTCA+TGG - Chr2:82970081-82970100 MsG0280011361.01.T01:intron 35.0%
GATGAAGCTGAAACTGAATT+TGG - Chr2:82971870-82971889 MsG0280011361.01.T01:intron 35.0%
GCATTGCTTTGTATAAAAGC+AGG - Chr2:82972848-82972867 MsG0280011361.01.T01:intron 35.0%
GCATTTCATTAGAGCTCAAA+TGG - Chr2:82972483-82972502 MsG0280011361.01.T01:intron 35.0%
GGAAATGAACACACAACAAA+TGG - Chr2:82971698-82971717 MsG0280011361.01.T01:CDS 35.0%
TAACATACCATTAAGGTTGG+AGG - Chr2:82971252-82971271 MsG0280011361.01.T01:CDS 35.0%
TCAATGTATCGAGATTTCCT+TGG + Chr2:82973378-82973397 None:intergenic 35.0%
TGTGTGACTTTCTAACTAGA+AGG + Chr2:82970674-82970693 None:intergenic 35.0%
TTAGACAATAAACCTGGACT+TGG + Chr2:82972650-82972669 None:intergenic 35.0%
TTCCAAATCTAGATAGGACA+TGG - Chr2:82970996-82971015 MsG0280011361.01.T01:intron 35.0%
TTGCATGCATCAGTATTATG+TGG + Chr2:82971072-82971091 None:intergenic 35.0%
! AAACTGAATTTGGGTTTGGA+AGG - Chr2:82971880-82971899 MsG0280011361.01.T01:intron 35.0%
! AGAGATTTTCTCCACTTATG+AGG + Chr2:82971953-82971972 None:intergenic 35.0%
! ATACTTTTCAACAATGCCTC+TGG - Chr2:82973397-82973416 MsG0280011361.01.T01:CDS 35.0%
! ATGTGCCTGTTTTACTGAAA+TGG - Chr2:82971098-82971117 MsG0280011361.01.T01:intron 35.0%
! ATGTTTTCTTGTGTGGTGAT+TGG - Chr2:82970605-82970624 MsG0280011361.01.T01:intron 35.0%
! ATTATTCCACGGTGAGTTTT+AGG + Chr2:82973301-82973320 None:intergenic 35.0%
! CAAAACATTGGTAGTCTTGA+TGG + Chr2:82973430-82973449 None:intergenic 35.0%
! GATCATGATGGAGTTAAAAC+TGG - Chr2:82970216-82970235 MsG0280011361.01.T01:intron 35.0%
! GATTCTTTCCAAATTTTGGG+GGG - Chr2:82973606-82973625 MsG0280011361.01.T01:CDS 35.0%
! GTTTGTTCTGATTGGTGTTT+AGG - Chr2:82972228-82972247 MsG0280011361.01.T01:intron 35.0%
! TCTGATATACGTTGTTGACT+TGG - Chr2:82970645-82970664 MsG0280011361.01.T01:intron 35.0%
! TGTTGATTGCAACTAGCTAT+TGG + Chr2:82971023-82971042 None:intergenic 35.0%
! TTGAGTGATGCTAGTTGTTT+TGG + Chr2:82972420-82972439 None:intergenic 35.0%
!! AAGTCAATTTTGGTGAAGTC+GGG + Chr2:82970902-82970921 None:intergenic 35.0%
!! GAAGATTGAAGAGTGTTGAA+AGG + Chr2:82972884-82972903 None:intergenic 35.0%
!! TGTTGAGCTTGTTATTAGGT+TGG - Chr2:82970174-82970193 MsG0280011361.01.T01:intron 35.0%
!! TTTATTAAAGCATCGGAGAG+AGG - Chr2:82971833-82971852 MsG0280011361.01.T01:intron 35.0%
!! TTTTCCATGGATTTTGGCAA+TGG + Chr2:82973077-82973096 None:intergenic 35.0%
!!! GTACTAGTTTTCATGTCCAT+AGG + Chr2:82971912-82971931 None:intergenic 35.0%
AAATCTCTGTCCTGATAGAG+AGG - Chr2:82971965-82971984 MsG0280011361.01.T01:intron 40.0%
AACGGTTGAGTTCGTTTGTT+CGG + Chr2:82971586-82971605 None:intergenic 40.0%
AACTCAACCGTTACGTTGAT+TGG - Chr2:82971594-82971613 MsG0280011361.01.T01:CDS 40.0%
AAGAACAACATGAACTGTCC+TGG + Chr2:82973487-82973506 None:intergenic 40.0%
AAGCACTCCAATCAACGTAA+CGG + Chr2:82971604-82971623 None:intergenic 40.0%
ACCGTTAGATTGACGAAGAT+CGG - Chr2:82970707-82970726 MsG0280011361.01.T01:intron 40.0%
ACTTGAATAACAGCTCTCAC+AGG + Chr2:82971555-82971574 None:intergenic 40.0%
AGAATCAAATGCAACACAGC+TGG - Chr2:82972953-82972972 MsG0280011361.01.T01:intron 40.0%
AGCTCAATAACATCTAGTCG+AGG + Chr2:82973261-82973280 None:intergenic 40.0%
AGGACAGTTCATGTTGTTCT+TGG - Chr2:82973486-82973505 MsG0280011361.01.T01:CDS 40.0%
ATCACCATTGCCAAAATCCA+TGG - Chr2:82973070-82973089 MsG0280011361.01.T01:intron 40.0%
ATCTCAGGTTCAATTCTTCC+CGG - Chr2:82970455-82970474 MsG0280011361.01.T01:intron 40.0%
ATCTCTTGATTGCGTGACTA+CGG + Chr2:82970842-82970861 None:intergenic 40.0%
ATGCATAGCAATGAGTTCAC+AGG - Chr2:82973192-82973211 MsG0280011361.01.T01:CDS 40.0%
CAAGAAAGAACAAGTCGTGT+AGG - Chr2:82971466-82971485 MsG0280011361.01.T01:intron 40.0%
CATATATGTGAGTCTCATGC+CGG + Chr2:82970798-82970817 None:intergenic 40.0%
CATGGAATGGAATCTTTGTC+TGG + Chr2:82969998-82970017 None:intergenic 40.0%
CATTAGGGCTTGGAAAATCA+AGG - Chr2:82973153-82973172 MsG0280011361.01.T01:intron 40.0%
CCACAAGTATGACTGAAAGA+AGG + Chr2:82970143-82970162 None:intergenic 40.0%
CCATACCCAAAACATCTAAC+AGG - Chr2:82972622-82972641 MsG0280011361.01.T01:intron 40.0%
CCGTGGAATAATTTGAGCTA+TGG - Chr2:82973309-82973328 MsG0280011361.01.T01:intron 40.0%
CCTTCTTTCAGTCATACTTG+TGG - Chr2:82970140-82970159 MsG0280011361.01.T01:intron 40.0%
GCAAGCCAGAATTTCACTAT+TGG - Chr2:82973122-82973141 MsG0280011361.01.T01:intron 40.0%
GCCTTCTTAAACAGCTAACA+TGG - Chr2:82970032-82970051 MsG0280011361.01.T01:CDS 40.0%
GCTAACAATAGTCTCACTTG+TGG - Chr2:82973540-82973559 MsG0280011361.01.T01:CDS 40.0%
GGACATGAAAACTAGTACTG+TGG - Chr2:82971914-82971933 MsG0280011361.01.T01:intron 40.0%
GTCCATGTCCTATCTAGATT+TGG + Chr2:82971001-82971020 None:intergenic 40.0%
GTGATTCAGCTCATTGTAAC+TGG - Chr2:82972927-82972946 MsG0280011361.01.T01:intron 40.0%
TAAGAAACTCTTTGCAGCCA+AGG - Chr2:82973358-82973377 MsG0280011361.01.T01:CDS 40.0%
TAGTCCACTGAAATTGACAC+CGG + Chr2:82970477-82970496 None:intergenic 40.0%
TATATCAGAGAGTCTCATGC+TGG + Chr2:82970634-82970653 None:intergenic 40.0%
TCCGATCTTCGTCAATCTAA+CGG + Chr2:82970711-82970730 None:intergenic 40.0%
TCTTGATGGAATTGTACCAG+AGG + Chr2:82973416-82973435 None:intergenic 40.0%
TGCTCTACCGAGCTTAAATA+TGG - Chr2:82971293-82971312 MsG0280011361.01.T01:CDS 40.0%
TTACCGATGTCTTGACTGAA+TGG - Chr2:82971337-82971356 MsG0280011361.01.T01:intron 40.0%
TTAGCTGTTTAAGAAGGCGA+AGG + Chr2:82970030-82970049 None:intergenic 40.0%
TTCATGCAGCTCAAAACGAA+CGG - Chr2:82971526-82971545 MsG0280011361.01.T01:intron 40.0%
! ATCTAGTCGAGGCATCTATA+AGG + Chr2:82973250-82973269 None:intergenic 40.0%
! CAGTGTGGTGATATTTTCCA+TGG + Chr2:82973090-82973109 None:intergenic 40.0%
! CTTGATTTTCCAAGCCCTAA+TGG + Chr2:82973155-82973174 None:intergenic 40.0%
! GCTGAAACTGAATTTGGGTT+TGG - Chr2:82971876-82971895 MsG0280011361.01.T01:intron 40.0%
! GTTCTGATTGGTGTTTAGGA+GGG - Chr2:82972232-82972251 MsG0280011361.01.T01:intron 40.0%
! TCTCTAGAGAGTAAGTTGGA+TGG + Chr2:82973337-82973356 None:intergenic 40.0%
! TGGAGCCTGTTAGATGTTTT+GGG + Chr2:82972630-82972649 None:intergenic 40.0%
! TGTTCTGATTGGTGTTTAGG+AGG - Chr2:82972231-82972250 MsG0280011361.01.T01:intron 40.0%
! TTGGAGCCTGTTAGATGTTT+TGG + Chr2:82972631-82972650 None:intergenic 40.0%
!! AGTTAAAACTGGTGCTGCTT+TGG - Chr2:82970227-82970246 MsG0280011361.01.T01:intron 40.0%
!! CCTGTTAGATGTTTTGGGTA+TGG + Chr2:82972625-82972644 None:intergenic 40.0%
!! GGACTAGTTTGACGACTTAA+GGG - Chr2:82970491-82970510 MsG0280011361.01.T01:intron 40.0%
!! TGGACTAGTTTGACGACTTA+AGG - Chr2:82970490-82970509 MsG0280011361.01.T01:intron 40.0%
AAGGAGGAAGTTGCATGGAA+TGG + Chr2:82970011-82970030 None:intergenic 45.0%
ACAGTGAAAGCCTCTCTATC+AGG + Chr2:82971978-82971997 None:intergenic 45.0%
ACTAGCTCCTCCAACCTTAA+TGG + Chr2:82971262-82971281 None:intergenic 45.0%
AGTCCACTGAAATTGACACC+GGG + Chr2:82970476-82970495 None:intergenic 45.0%
CAATGTCATGCAAGCACAGA+TGG - Chr2:82971763-82971782 MsG0280011361.01.T01:intron 45.0%
CATCATCAGTAGCTCTTGCA+TGG + Chr2:82970352-82970371 None:intergenic 45.0%
CATGCAAGAGCTACTGATGA+TGG - Chr2:82970350-82970369 MsG0280011361.01.T01:intron 45.0%
GATTGTTACCTTGCTGAAGC+TGG - Chr2:82970270-82970289 MsG0280011361.01.T01:intron 45.0%
GGAATGGAATCTTTGTCTGG+TGG + Chr2:82969995-82970014 None:intergenic 45.0%
GTGCTTCTTTCAGTAGCTTG+AGG - Chr2:82971618-82971637 MsG0280011361.01.T01:CDS 45.0%
GTGGAAGAAGGAATGTCATC+TGG + Chr2:82973570-82973589 None:intergenic 45.0%
GTTTGGAAGGCAAACACCTA+TGG - Chr2:82971893-82971912 MsG0280011361.01.T01:intron 45.0%
TCAGTAGCTCTTGCATGGTT+AGG + Chr2:82970347-82970366 None:intergenic 45.0%
TCTCTTGATTGCGTGACTAC+GGG + Chr2:82970841-82970860 None:intergenic 45.0%
TTACCTTGCTGAAGCTGGTT+TGG - Chr2:82970275-82970294 MsG0280011361.01.T01:intron 45.0%
TTGAGGAGTCCAAGTGGATA+CGG - Chr2:82971635-82971654 MsG0280011361.01.T01:CDS 45.0%
! TGGTGGAAGAACACTGACTA+AGG + Chr2:82969978-82969997 None:intergenic 45.0%
!! CGTGTAGGTTGATTGATAGC+AGG - Chr2:82971481-82971500 MsG0280011361.01.T01:intron 45.0%
!! GTTTTGAGCTGCATGAAGTG+AGG + Chr2:82971523-82971542 None:intergenic 45.0%
!! TCTCAGTTTGTTGCACTTGC+TGG - Chr2:82970314-82970333 MsG0280011361.01.T01:intron 45.0%
AGAAAGACACCGTTGCCTGT+GGG + Chr2:82971673-82971692 None:intergenic 50.0%
AGTAGCTTGAGGAGTCCAAG+TGG - Chr2:82971629-82971648 MsG0280011361.01.T01:CDS 50.0%
ATCTAACAGGCTCCAAGTCC+AGG - Chr2:82972635-82972654 MsG0280011361.01.T01:intron 50.0%
CAACACACACCGTATCCACT+TGG + Chr2:82971647-82971666 None:intergenic 50.0%
CAAGTGGATACGGTGTGTGT+TGG - Chr2:82971645-82971664 MsG0280011361.01.T01:CDS 50.0%
CATCCAAACCAGCTTCAGCA+AGG + Chr2:82970281-82970300 None:intergenic 50.0%
CTCCACATCATGCTAACCAG+TGG + Chr2:82972697-82972716 None:intergenic 50.0%
CTTTCTTGCTTCGACACGCT+TGG + Chr2:82971454-82971473 None:intergenic 50.0%
GCAACGGTGTCTTTCTAAGC+GGG - Chr2:82971677-82971696 MsG0280011361.01.T01:CDS 50.0%
GCAAGCACAGATGGACAAGA+TGG - Chr2:82971772-82971791 MsG0280011361.01.T01:intron 50.0%
GCTGTTTAAGAAGGCGAAGG+AGG + Chr2:82970027-82970046 None:intergenic 50.0%
GGCAACGGTGTCTTTCTAAG+CGG - Chr2:82971676-82971695 MsG0280011361.01.T01:CDS 50.0%
GGCAACTTTCCATTAGGGCT+TGG - Chr2:82973143-82973162 MsG0280011361.01.T01:intron 50.0%
GTGAAACTTCCAAGGTCCTC+AGG + Chr2:82973225-82973244 None:intergenic 50.0%
TAGAAAGACACCGTTGCCTG+TGG + Chr2:82971674-82971693 None:intergenic 50.0%
! CACTGGTTAGCATGATGTGG+AGG - Chr2:82972695-82972714 MsG0280011361.01.T01:intron 50.0%
! CTCCACTGGTTAGCATGATG+TGG - Chr2:82972692-82972711 MsG0280011361.01.T01:intron 50.0%
! CTTCCCGGTGTCAATTTCAG+TGG - Chr2:82970470-82970489 MsG0280011361.01.T01:intron 50.0%
!!! TTCCACGGTGAGTTTTAGGC+AGG + Chr2:82973297-82973316 None:intergenic 50.0%
AGGCGAAGGAGGAAGTTGCA+TGG + Chr2:82970016-82970035 None:intergenic 55.0%
CTTCCAAGGTCCTCAGGAAG+TGG + Chr2:82973219-82973238 None:intergenic 55.0%
GAAAGACACCGTTGCCTGTG+GGG + Chr2:82971672-82971691 None:intergenic 55.0%
GGCGTAGTGAAGAACTCCAC+TGG - Chr2:82972678-82972697 MsG0280011361.01.T01:intron 55.0%
GTTCACAGGACCACTTCCTG+AGG - Chr2:82973206-82973225 MsG0280011361.01.T01:CDS 55.0%
TGCCTGCCTAAAACTCACCG+TGG - Chr2:82973292-82973311 MsG0280011361.01.T01:intron 55.0%
GGACCACTTCCTGAGGACCT+TGG - Chr2:82973213-82973232 MsG0280011361.01.T01:CDS 60.0%
GTGTTGGACCCCACAGGCAA+CGG - Chr2:82971661-82971680 MsG0280011361.01.T01:CDS 60.0%
CGGTGTGTGTTGGACCCCAC+AGG - Chr2:82971655-82971674 MsG0280011361.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 82969947 82973632 82969947 ID=MsG0280011361.01;Name=MsG0280011361.01
Chr2 mRNA 82969947 82973632 82969947 ID=MsG0280011361.01.T01;Parent=MsG0280011361.01;Name=MsG0280011361.01.T01;_AED=0.64;_eAED=0.68;_QI=0|0|0|0.6|0.75|0.8|5|0|266
Chr2 exon 82973342 82973632 82973342 ID=MsG0280011361.01.T01:exon:12638;Parent=MsG0280011361.01.T01
Chr2 exon 82973176 82973259 82973176 ID=MsG0280011361.01.T01:exon:12637;Parent=MsG0280011361.01.T01
Chr2 exon 82971584 82971736 82971584 ID=MsG0280011361.01.T01:exon:12636;Parent=MsG0280011361.01.T01
Chr2 exon 82971202 82971329 82971202 ID=MsG0280011361.01.T01:exon:12635;Parent=MsG0280011361.01.T01
Chr2 exon 82969947 82970091 82969947 ID=MsG0280011361.01.T01:exon:12634;Parent=MsG0280011361.01.T01
Chr2 CDS 82973342 82973632 82973342 ID=MsG0280011361.01.T01:cds;Parent=MsG0280011361.01.T01
Chr2 CDS 82973176 82973259 82973176 ID=MsG0280011361.01.T01:cds;Parent=MsG0280011361.01.T01
Chr2 CDS 82971584 82971736 82971584 ID=MsG0280011361.01.T01:cds;Parent=MsG0280011361.01.T01
Chr2 CDS 82971202 82971329 82971202 ID=MsG0280011361.01.T01:cds;Parent=MsG0280011361.01.T01
Chr2 CDS 82969947 82970091 82969947 ID=MsG0280011361.01.T01:cds;Parent=MsG0280011361.01.T01
Gene Sequence

>MsG0280011361.01.T01

ATGGATGAAGAAAAGTTCTTTGTTGAAACCTTAGTCAGTGTTCTTCCACCAGACAAAGATTCCATTCCATGCAACTTCCTCCTTCGCCTTCTTAAACAGCTAACATGGTTCTTGTTGAGTCTACTTATCGAACCGATCTTGAGATCGAATTTCATGGCAGTTAGATCAAGCTTCATTAAAAGAACTCATGATACCTTCTTTCAGTCATACTTGTGGGACCCTTTTGATGTTGAGCTTGTTATTAGGTTGGTTAAGAGGTTTTTGATTTGGATCATGATGGAGTTAAAACTGTTTGTTGCACTTGCTGGTGCTCTTCCTAACCATGCAAGAGCTACTGATGATGGTTTATATAGAGCCATTGACACTTATCTTAAACATCGGAGAGAGGAGAATGTTGAACAAGATGAAGCTGAAACTGAATTTGGGTTTGGAAGGCAAACACCTATGGACATGAAAACTAGTACTGTGGTCAAAAGTAGACTCCTCATAAGTGGAGAAAATCTCTGTCCTGATAGAGAGGCTTTCACTGAGGGTATCAAATCATCCAAGAGTCTGTATAATTTTTCATTACAAGACTATGGAGTAATTCTATTCTACATTGAAACAACCAAGAATTTTATAGCAGATGCTAGATGTTTCAAATTTCTAGTACAAAAGACAGTTCATGTTGTTCTTGGAAAGCTTGTGAAGCTACAAAAGTTAGAATTGGCTAACAATAGTCTCACTTGTGGAATTCCAGATGACATTCCTTCTTCCACATCACTTTCTTTCATTGATTCTTTCCAAATTTTGGGGGGATGA
Protein sequence

>MsG0280011361.01.T01

MDEEKFFVETLVSVLPPDKDSIPCNFLLRLLKQLTWFLLSLLIEPILRSNFMAVRSSFIKRTHDTFFQSYLWDPFDVELVIRLVKRFLIWIMMELKLFVALAGALPNHARATDDGLYRAIDTYLKHRREENVEQDEAETEFGFGRQTPMDMKTSTVVKSRLLISGENLCPDREAFTEGIKSSKSLYNFSLQDYGVILFYIETTKNFIADARCFKFLVQKTVHVVLGKLVKLQKLELANNSLTCGIPDDIPSSTSLSFIDSFQILGG*