AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011390.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011390.01.T01 MTR_2g103600 97.468 316 8 0 1 316 1 316 0.0 625
MsG0280011390.01.T01 MTR_4g021755 56.184 283 114 5 30 310 41 315 2.28e-101 303
MsG0280011390.01.T01 MTR_7g498280 56.357 291 118 4 15 304 20 302 1.13e-100 299
MsG0280011390.01.T01 MTR_7g061780 54.255 282 120 4 30 310 25 298 1.82e-95 286
MsG0280011390.01.T01 MTR_2g097210 55.636 275 114 3 30 302 43 311 2.56e-90 275
MsG0280011390.01.T01 MTR_2g097210 56.818 264 106 3 30 291 43 300 3.02e-89 269
MsG0280011390.01.T01 MTR_1g101310 48.366 306 138 3 3 304 5 294 1.38e-88 268
MsG0280011390.01.T01 MTR_3g073530 43.985 266 141 3 33 297 42 300 1.74e-55 185
MsG0280011390.01.T01 MTR_6g089790 68.421 57 16 1 191 247 1 55 6.08e-17 74.3
MsG0280011390.01.T01 MTR_2g088315 46.053 76 36 1 107 182 13 83 1.64e-15 70.9
MsG0280011390.01.T01 MTR_2g088290 30.435 207 90 8 51 252 1 158 2.10e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011390.01.T01 AT1G52580 60.797 301 109 7 1 299 1 294 4.35e-120 348
MsG0280011390.01.T01 AT2G29050 61.011 277 99 4 27 302 50 318 1.31e-108 321
MsG0280011390.01.T01 AT2G29050 55.932 295 93 5 27 292 50 336 1.61e-102 304
MsG0280011390.01.T01 AT1G63120 57.312 253 96 4 28 278 28 270 1.25e-97 291
MsG0280011390.01.T01 AT1G12750 51.786 280 126 4 29 306 16 288 9.82e-94 281
MsG0280011390.01.T01 AT1G12750 51.786 280 126 4 29 306 16 288 9.82e-94 281
MsG0280011390.01.T01 AT1G12750 51.786 280 126 4 29 306 16 288 9.82e-94 281
MsG0280011390.01.T01 AT1G12750 51.786 280 126 4 29 306 16 288 9.82e-94 281
MsG0280011390.01.T01 AT1G12750 51.786 280 126 4 29 306 16 288 9.82e-94 281
MsG0280011390.01.T01 AT5G07250 50.649 308 132 5 11 306 25 324 6.34e-90 272
MsG0280011390.01.T01 AT3G53780 50.554 271 122 4 30 300 63 321 2.53e-84 259
MsG0280011390.01.T01 AT3G53780 51.145 262 116 4 30 291 63 312 3.08e-83 254
MsG0280011390.01.T01 AT4G23070 51.971 279 123 5 27 304 25 293 8.67e-75 233
MsG0280011390.01.T01 AT1G12750 55.615 187 73 4 29 211 16 196 1.01e-65 206
MsG0280011390.01.T01 AT1G12750 56.983 179 69 3 29 205 16 188 1.24e-65 205
MsG0280011390.01.T01 AT3G53780 50.000 206 94 2 95 300 1 197 3.94e-64 204
MsG0280011390.01.T01 AT1G77860 41.132 265 136 5 33 290 48 299 1.95e-59 194
MsG0280011390.01.T01 AT1G77860 41.132 265 136 5 33 290 48 299 2.80e-59 195
MsG0280011390.01.T01 AT5G07250 53.140 207 79 4 11 205 25 225 2.68e-58 189
MsG0280011390.01.T01 AT1G25290 34.375 160 91 5 103 255 161 313 1.77e-14 73.6
MsG0280011390.01.T01 AT1G25290 34.416 154 92 4 103 255 161 306 3.28e-14 72.8
MsG0280011390.01.T01 AT5G38510 29.193 161 105 4 96 254 219 372 1.10e-11 65.5
MsG0280011390.01.T01 AT5G38510 29.193 161 105 4 96 254 219 372 1.10e-11 65.5
MsG0280011390.01.T01 AT5G38510 29.193 161 105 4 96 254 219 372 1.10e-11 65.5

Find 80 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCTTTGGTATCAATATT+TGG 0.097106 2:-83388127 MsG0280011390.01.T01:CDS
GGAGTTCTATATTTGCTTTC+TGG 0.112592 2:-83387225 MsG0280011390.01.T01:CDS
GTTCGCCTTGAGAATGAATT+TGG 0.205071 2:-83387368 MsG0280011390.01.T01:CDS
TCTCATCATTGGCCTAAATT+TGG 0.218525 2:-83386676 MsG0280011390.01.T01:CDS
CTATATTTGCTTTCTGGCTT+TGG 0.237472 2:-83387219 MsG0280011390.01.T01:CDS
TTGGATTTGGCAGTGAAAAT+TGG 0.260847 2:-83387246 MsG0280011390.01.T01:intron
GCACCAACTGATACGGTATT+TGG 0.268428 2:+83387153 None:intergenic
TTGGACTATCTATTTAAATA+AGG 0.284285 2:-83387076 MsG0280011390.01.T01:intron
ATACACGAACATTGCAATAT+TGG 0.288693 2:+83388194 None:intergenic
TTCTGCAGGTTGAGGGTATT+AGG 0.315192 2:-83387512 MsG0280011390.01.T01:intron
TAAATCCAACAGCCAAATTT+AGG 0.316777 2:+83386664 None:intergenic
TGCCTTTGGTATCAATATTT+GGG 0.351007 2:-83388126 MsG0280011390.01.T01:CDS
AGAAAGTAGGCGGTGGTGGC+GGG 0.367689 2:+83388271 None:intergenic
TCAGTCATTACGCTACTTAT+CGG 0.370474 2:-83386465 MsG0280011390.01.T01:CDS
AAACGTAAATCCAAGTATAA+AGG 0.381415 2:-83386513 MsG0280011390.01.T01:CDS
TAGAAAGTAGGCGGTGGTGG+CGG 0.386984 2:+83388270 None:intergenic
CATATAGGAGGATTCCTATC+AGG 0.389877 2:-83386618 MsG0280011390.01.T01:CDS
ACCGTATCAGTTGGTGCATC+GGG 0.403381 2:-83387147 MsG0280011390.01.T01:CDS
GAATAAAAGACTAAACATAT+TGG 0.408803 2:+83387397 None:intergenic
TATTTGCTTTCTGGCTTTGG+TGG 0.424233 2:-83387216 MsG0280011390.01.T01:CDS
ACTTGCATGTTTCTTCATGC+AGG 0.433987 2:-83387437 MsG0280011390.01.T01:CDS
AGGCTATCAGTATTTCTTCC+TGG 0.441269 2:-83386493 MsG0280011390.01.T01:CDS
ACTTTCAGTATTCGCTAAGA+AGG 0.444351 2:+83386084 None:intergenic
GTTTACATTCTGCAGGTTGA+GGG 0.447403 2:-83387519 MsG0280011390.01.T01:intron
GAAAGTAGGCGGTGGTGGCG+GGG 0.449589 2:+83388272 None:intergenic
ATTTAAATAGATAGTCCAAT+TGG 0.450252 2:+83387080 None:intergenic
CAGTCATTACGCTACTTATC+GGG 0.457261 2:-83386464 MsG0280011390.01.T01:intron
ATAACGAGCCGCCTCAATAT+CGG 0.458145 2:+83388296 None:intergenic
ATACTGATAGCCTTTATACT+TGG 0.460587 2:+83386503 None:intergenic
TTGTTCACATAACCAAATTG+AGG 0.462978 2:+83386564 None:intergenic
ATTGGCCTAAATTTGGCTGT+TGG 0.471687 2:-83386669 MsG0280011390.01.T01:CDS
AAAGTAGGCGGTGGTGGCGG+GGG 0.473559 2:+83388273 None:intergenic
TCATCTTCATTCAAATAGCC+AGG 0.474228 2:+83388150 None:intergenic
TTAGTGAGCTTCTAACCAAT+TGG 0.474947 2:-83387095 MsG0280011390.01.T01:CDS
TACCGTATCAGTTGGTGCAT+CGG 0.475291 2:-83387148 MsG0280011390.01.T01:CDS
ACAAGTCTACTTCTCATCAT+TGG 0.480296 2:-83386687 MsG0280011390.01.T01:CDS
TTCAATGAAAACCCTCTCCT+TGG 0.483625 2:-83388084 MsG0280011390.01.T01:CDS
ATGTAGAAAGTAGGCGGTGG+TGG 0.484370 2:+83388267 None:intergenic
TGGTGGGTGAAAATGAAGTA+TGG 0.484851 2:-83387469 MsG0280011390.01.T01:CDS
TGAATGAAGATGATTGCCTT+TGG 0.484862 2:-83388140 MsG0280011390.01.T01:CDS
TCATTTGACAGATATGCCTA+TGG 0.495016 2:-83386148 MsG0280011390.01.T01:intron
TGTTCACATAACCAAATTGA+GGG 0.495056 2:+83386565 None:intergenic
CGCCAACACAATGGTTCTCA+TGG 0.513113 2:-83388239 MsG0280011390.01.T01:CDS
GATTCTCACGTGCGGACAGA+AGG 0.516174 2:+83388060 None:intergenic
AAAATCCAAATTCATTCTCA+AGG 0.516279 2:+83387363 None:intergenic
GTGGACAATTCAGCTCATAT+AGG 0.523918 2:-83386633 MsG0280011390.01.T01:CDS
AACACAATGGTTCTCATGGT+TGG 0.531112 2:-83388235 MsG0280011390.01.T01:CDS
GGACAGAAGGGCCAAGGAGA+GGG 0.532109 2:+83388073 None:intergenic
CATGAGAACCATTGTGTTGG+CGG 0.546872 2:+83388240 None:intergenic
ACCCGATGCACCAACTGATA+CGG 0.550141 2:+83387146 None:intergenic
GTCGCCGTTCTCCGATATTG+AGG 0.551647 2:-83388307 MsG0280011390.01.T01:CDS
GGTATTAGGAGCTCTTGAAA+AGG 0.553959 2:-83387498 MsG0280011390.01.T01:CDS
TTCCCAAATATTGATACCAA+AGG 0.563541 2:+83388124 None:intergenic
ACGTGCGGACAGAAGGGCCA+AGG 0.568851 2:+83388067 None:intergenic
ATGTATATCAATGATTGCCC+TGG 0.571703 2:-83388168 MsG0280011390.01.T01:CDS
AACCATGAGAACCATTGTGT+TGG 0.576399 2:+83388237 None:intergenic
TCTTGAAAAGGACCTTGTGG+TGG 0.579909 2:-83387486 MsG0280011390.01.T01:CDS
GTACAATGTAGCTAAGCCAT+AGG 0.586121 2:+83386132 None:intergenic
GGCGGTGGCATGTAGAAAGT+AGG 0.588387 2:+83388258 None:intergenic
GACAATTCAGCTCATATAGG+AGG 0.594629 2:-83386630 MsG0280011390.01.T01:CDS
GGTTAGAAGCTCACTAAGCA+TGG 0.598778 2:+83387101 None:intergenic
GCGTAATGACTGACAAGACC+AGG 0.609130 2:+83386475 None:intergenic
ATTCTCACGTGCGGACAGAA+GGG 0.610517 2:+83388061 None:intergenic
CGGACAGAAGGGCCAAGGAG+AGG 0.611548 2:+83388072 None:intergenic
CATCTTCATTCAAATAGCCA+GGG 0.618324 2:+83388151 None:intergenic
GCCGCCTCAATATCGGAGAA+CGG 0.618640 2:+83388303 None:intergenic
GAGAACCATTGTGTTGGCGG+TGG 0.622152 2:+83388243 None:intergenic
GCACCAAATACCGTATCAGT+TGG 0.622766 2:-83387156 MsG0280011390.01.T01:CDS
GGCTTAGCTACATTGTACAT+AGG 0.638607 2:-83386127 MsG0280011390.01.T01:CDS
AGCTCTTGAAAAGGACCTTG+TGG 0.646384 2:-83387489 MsG0280011390.01.T01:CDS
TGAGCTGAATTGTCCACATG+AGG 0.649223 2:+83386639 None:intergenic
GGCATGTAGAAAGTAGGCGG+TGG 0.649400 2:+83388264 None:intergenic
CTTGAAAAGGACCTTGTGGT+GGG 0.656591 2:-83387485 MsG0280011390.01.T01:CDS
AACAACAAATATATACCACC+AGG 0.669042 2:-83386546 MsG0280011390.01.T01:CDS
GCCGTTCTCCGATATTGAGG+CGG 0.669086 2:-83388304 MsG0280011390.01.T01:CDS
ACATGCCACCGCCAACACAA+TGG 0.675117 2:-83388248 MsG0280011390.01.T01:CDS
TGTTGGATTTATACCTCATG+TGG 0.677933 2:-83386652 MsG0280011390.01.T01:CDS
GCATTAAAATAACAAAACCA+AGG 0.678293 2:+83386589 None:intergenic
GGTGGCATGTAGAAAGTAGG+CGG 0.681757 2:+83388261 None:intergenic
TGGGTGAAAATGAAGTATGG+CGG 0.777515 2:-83387466 MsG0280011390.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTTATTATATTTATTCT+TGG - Chr2:83387134-83387153 MsG0280011390.01.T01:CDS 10.0%
!! AATTTGAATTTAATCTGTAT+TGG - Chr2:83388198-83388217 MsG0280011390.01.T01:CDS 15.0%
!! AGAAAGAAAAAAAAATACAT+AGG - Chr2:83387378-83387397 MsG0280011390.01.T01:CDS 15.0%
!! ATTATATTTATTCTTGGATT+TGG - Chr2:83387140-83387159 MsG0280011390.01.T01:CDS 15.0%
!! GAAAGAAAAAAAAATACATA+GGG - Chr2:83387379-83387398 MsG0280011390.01.T01:CDS 15.0%
!! TTTATGTTCAATTATAATGA+TGG - Chr2:83388175-83388194 MsG0280011390.01.T01:CDS 15.0%
!! ATTTAAATAGATAGTCCAAT+TGG + Chr2:83387322-83387341 None:intergenic 20.0%
!! GAATAAAAGACTAAACATAT+TGG + Chr2:83387005-83387024 None:intergenic 20.0%
!! TCAAAGTTAATCTTGTAAAT+TGG - Chr2:83387475-83387494 MsG0280011390.01.T01:CDS 20.0%
!! TTGGACTATCTATTTAAATA+AGG - Chr2:83387323-83387342 MsG0280011390.01.T01:intron 20.0%
!!! ATGTTTAGTCTTTTATTCAT+AGG - Chr2:83387007-83387026 MsG0280011390.01.T01:intron 20.0%
!!! CAAACGTTTTTAATAATTTG+AGG - Chr2:83388084-83388103 MsG0280011390.01.T01:CDS 20.0%
!!! CATCATCATTTTAAATATCA+TGG - Chr2:83386395-83386414 MsG0280011390.01.T01:intron 20.0%
!!! CTCAATTTTTTGTTATATTG+CGG + Chr2:83386620-83386639 None:intergenic 20.0%
!!! TTGTTATCTATTTTGCATTT+GGG - Chr2:83387210-83387229 MsG0280011390.01.T01:CDS 20.0%
!!! TTTGTTATCTATTTTGCATT+TGG - Chr2:83387209-83387228 MsG0280011390.01.T01:CDS 20.0%
! AAAATCCAAATTCATTCTCA+AGG + Chr2:83387039-83387058 None:intergenic 25.0%
! AAACGTAAATCCAAGTATAA+AGG - Chr2:83387886-83387905 MsG0280011390.01.T01:intron 25.0%
! AGAAAAAAAAATACATAGGG+TGG - Chr2:83387382-83387401 MsG0280011390.01.T01:CDS 25.0%
! ATTACATCAAAAGTTAAAGG+AGG + Chr2:83388228-83388247 None:intergenic 25.0%
! CGCAATATAACAAAAAATTG+AGG - Chr2:83386618-83386637 MsG0280011390.01.T01:CDS 25.0%
! GAAAAAAAAATACATAGGGT+GGG - Chr2:83387383-83387402 MsG0280011390.01.T01:CDS 25.0%
! GCAATTACATCAAAAGTTAA+AGG + Chr2:83388231-83388250 None:intergenic 25.0%
! GCATTAAAATAACAAAACCA+AGG + Chr2:83387813-83387832 None:intergenic 25.0%
! GCTTTCTCATTAAAATATCA+TGG - Chr2:83386441-83386460 MsG0280011390.01.T01:intron 25.0%
! TCATAAGCTTGATTATAAAG+AGG - Chr2:83387522-83387541 MsG0280011390.01.T01:intron 25.0%
! TGCCGAAATATAAAAAATTG+CGG - Chr2:83386690-83386709 MsG0280011390.01.T01:CDS 25.0%
!! ATATTGGCTAAAAAAATGAG+TGG + Chr2:83386192-83386211 None:intergenic 25.0%
!! TTTTATATTTCGGCAAAATG+CGG + Chr2:83386685-83386704 None:intergenic 25.0%
!!! ATCTTTTTACTTTTGAACCA+GGG - Chr2:83387632-83387651 MsG0280011390.01.T01:intron 25.0%
!!! CACCGCAATTTTTTATATTT+CGG + Chr2:83386695-83386714 None:intergenic 25.0%
!!! TATCTTTTTACTTTTGAACC+AGG - Chr2:83387631-83387650 MsG0280011390.01.T01:intron 25.0%
!!! TGAAATGATAGTGATTTGTT+TGG + Chr2:83388030-83388049 None:intergenic 25.0%
!!! TTTGTCAATTGGTTGTTTTA+GGG - Chr2:83386850-83386869 MsG0280011390.01.T01:intron 25.0%
!!! TTTTGTCAATTGGTTGTTTT+AGG - Chr2:83386849-83386868 MsG0280011390.01.T01:intron 25.0%
AAACAACCAATTGACAAAAG+AGG + Chr2:83386848-83386867 None:intergenic 30.0%
AACAACAAATATATACCACC+AGG - Chr2:83387853-83387872 MsG0280011390.01.T01:intron 30.0%
ATAATGTTCAACAATGTACC+TGG - Chr2:83386419-83386438 MsG0280011390.01.T01:intron 30.0%
ATACACGAACATTGCAATAT+TGG + Chr2:83386208-83386227 None:intergenic 30.0%
ATACTGATAGCCTTTATACT+TGG + Chr2:83387899-83387918 None:intergenic 30.0%
ATTTGAGGACTTTGATTGAT+TGG - Chr2:83388099-83388118 MsG0280011390.01.T01:CDS 30.0%
CTTCTATTGTCTTACTTAGA+TGG - Chr2:83386738-83386757 MsG0280011390.01.T01:intron 30.0%
TAAATCCAACAGCCAAATTT+AGG + Chr2:83387738-83387757 None:intergenic 30.0%
TCAAAAACACAGAGACAATT+TGG - Chr2:83387562-83387581 MsG0280011390.01.T01:intron 30.0%
TGCCTTTGGTATCAATATTT+GGG - Chr2:83386273-83386292 MsG0280011390.01.T01:intron 30.0%
TGTTCACATAACCAAATTGA+GGG + Chr2:83387837-83387856 None:intergenic 30.0%
TTATTGTGTTTACATTCTGC+AGG - Chr2:83386873-83386892 MsG0280011390.01.T01:intron 30.0%
TTCCCAAATATTGATACCAA+AGG + Chr2:83386278-83386297 None:intergenic 30.0%
TTGCCTTTGGTATCAATATT+TGG - Chr2:83386272-83386291 MsG0280011390.01.T01:intron 30.0%
TTGTTCACATAACCAAATTG+AGG + Chr2:83387838-83387857 None:intergenic 30.0%
! TTTCATCCTCTTTTGTCAAT+TGG - Chr2:83386839-83386858 MsG0280011390.01.T01:intron 30.0%
!! AATGATAGTGATTTGTTTGG+CGG + Chr2:83388027-83388046 None:intergenic 30.0%
!!! GATATTTTAATGAGAAAGCC+AGG + Chr2:83386440-83386459 None:intergenic 30.0%
AACCAAGGAAAAATCCTGAT+AGG + Chr2:83387798-83387817 None:intergenic 35.0%
ACAAGTCTACTTCTCATCAT+TGG - Chr2:83387712-83387731 MsG0280011390.01.T01:intron 35.0%
ACTTTCAGTATTCGCTAAGA+AGG + Chr2:83388318-83388337 None:intergenic 35.0%
ACTTTGAACTGTACTGTGTA+AGG + Chr2:83387462-83387481 None:intergenic 35.0%
ATGTATATCAATGATTGCCC+TGG - Chr2:83386231-83386250 MsG0280011390.01.T01:intron 35.0%
ATGTGAGAGAGAAATTGAGA+GGG + Chr2:83386369-83386388 None:intergenic 35.0%
ATTATGTCAAATGCATGTCC+TGG - Chr2:83386543-83386562 MsG0280011390.01.T01:CDS 35.0%
CATCTTCATTCAAATAGCCA+GGG + Chr2:83386251-83386270 None:intergenic 35.0%
CTTTGAACTGTACTGTGTAA+GGG + Chr2:83387461-83387480 None:intergenic 35.0%
GGAGTTCTATATTTGCTTTC+TGG - Chr2:83387174-83387193 MsG0280011390.01.T01:CDS 35.0%
TATGTGAGAGAGAAATTGAG+AGG + Chr2:83386370-83386389 None:intergenic 35.0%
TCAGTCATTACGCTACTTAT+CGG - Chr2:83387934-83387953 MsG0280011390.01.T01:intron 35.0%
TCATCTTCATTCAAATAGCC+AGG + Chr2:83386252-83386271 None:intergenic 35.0%
TCATTTGACAGATATGCCTA+TGG - Chr2:83388251-83388270 MsG0280011390.01.T01:CDS 35.0%
TGAATGAAGATGATTGCCTT+TGG - Chr2:83386259-83386278 MsG0280011390.01.T01:intron 35.0%
TGTTGGATTTATACCTCATG+TGG - Chr2:83387747-83387766 MsG0280011390.01.T01:intron 35.0%
TTAGTGAGCTTCTAACCAAT+TGG - Chr2:83387304-83387323 MsG0280011390.01.T01:intron 35.0%
TTGGATTTGGCAGTGAAAAT+TGG - Chr2:83387153-83387172 MsG0280011390.01.T01:CDS 35.0%
TTTGAACTGTACTGTGTAAG+GGG + Chr2:83387460-83387479 None:intergenic 35.0%
! TCTCATCATTGGCCTAAATT+TGG - Chr2:83387723-83387742 MsG0280011390.01.T01:intron 35.0%
! TTACGTTTTGCATCATATCC+TGG + Chr2:83387874-83387893 None:intergenic 35.0%
! TTCCTATCAGGATTTTTCCT+TGG - Chr2:83387793-83387812 MsG0280011390.01.T01:intron 35.0%
!! ATTTTAATGCGCCCTCAATT+TGG - Chr2:83387823-83387842 MsG0280011390.01.T01:intron 35.0%
!! CTATATTTGCTTTCTGGCTT+TGG - Chr2:83387180-83387199 MsG0280011390.01.T01:CDS 35.0%
!!! ACATTTTAAAACCCCATGCA+TGG + Chr2:83386576-83386595 None:intergenic 35.0%
!!! ATGCATGGGGTTTTAAAATG+TGG - Chr2:83386575-83386594 MsG0280011390.01.T01:CDS 35.0%
AACACAATGGTTCTCATGGT+TGG - Chr2:83386164-83386183 MsG0280011390.01.T01:intron 40.0%
AACCATGAGAACCATTGTGT+TGG + Chr2:83386165-83386184 None:intergenic 40.0%
ACTTGCATGTTTCTTCATGC+AGG - Chr2:83386962-83386981 MsG0280011390.01.T01:intron 40.0%
AGGCTATCAGTATTTCTTCC+TGG - Chr2:83387906-83387925 MsG0280011390.01.T01:intron 40.0%
CAGTCATTACGCTACTTATC+GGG - Chr2:83387935-83387954 MsG0280011390.01.T01:intron 40.0%
CATATAGGAGGATTCCTATC+AGG - Chr2:83387781-83387800 MsG0280011390.01.T01:intron 40.0%
CCTACAATACATGCATGCAT+AGG - Chr2:83386790-83386809 MsG0280011390.01.T01:intron 40.0%
CCTATGCATGCATGTATTGT+AGG + Chr2:83386793-83386812 None:intergenic 40.0%
GACAATTCAGCTCATATAGG+AGG - Chr2:83387769-83387788 MsG0280011390.01.T01:intron 40.0%
GCACACTGTAGAAGTAAACA+TGG + Chr2:83387685-83387704 None:intergenic 40.0%
GGCTTAGCTACATTGTACAT+AGG - Chr2:83388272-83388291 MsG0280011390.01.T01:CDS 40.0%
GGTATTAGGAGCTCTTGAAA+AGG - Chr2:83386901-83386920 MsG0280011390.01.T01:intron 40.0%
GTACAATGTAGCTAAGCCAT+AGG + Chr2:83388270-83388289 None:intergenic 40.0%
GTGGACAATTCAGCTCATAT+AGG - Chr2:83387766-83387785 MsG0280011390.01.T01:intron 40.0%
GTTCGCCTTGAGAATGAATT+TGG - Chr2:83387031-83387050 MsG0280011390.01.T01:intron 40.0%
TGGGTGAAAATGAAGTATGG+CGG - Chr2:83386933-83386952 MsG0280011390.01.T01:intron 40.0%
TGTTTACATTCTGCAGGTTG+AGG - Chr2:83386879-83386898 MsG0280011390.01.T01:intron 40.0%
TTCAATGAAAACCCTCTCCT+TGG - Chr2:83386315-83386334 MsG0280011390.01.T01:intron 40.0%
! AGGAGAGGGTTTTCATTGAA+AGG + Chr2:83386315-83386334 None:intergenic 40.0%
! ATTGGCCTAAATTTGGCTGT+TGG - Chr2:83387730-83387749 MsG0280011390.01.T01:intron 40.0%
! GTTTACATTCTGCAGGTTGA+GGG - Chr2:83386880-83386899 MsG0280011390.01.T01:intron 40.0%
! TGGTGGGTGAAAATGAAGTA+TGG - Chr2:83386930-83386949 MsG0280011390.01.T01:intron 40.0%
!! TATTTGCTTTCTGGCTTTGG+TGG - Chr2:83387183-83387202 MsG0280011390.01.T01:CDS 40.0%
AGCTCTTGAAAAGGACCTTG+TGG - Chr2:83386910-83386929 MsG0280011390.01.T01:intron 45.0%
ATAACGAGCCGCCTCAATAT+CGG + Chr2:83386106-83386125 None:intergenic 45.0%
ATCTGTTAGAACAACAGCCC+TGG + Chr2:83387652-83387671 None:intergenic 45.0%
CATGAGAACCATTGTGTTGG+CGG + Chr2:83386162-83386181 None:intergenic 45.0%
CCTGGATTACTTCCATGCAT+GGG - Chr2:83386561-83386580 MsG0280011390.01.T01:CDS 45.0%
CTGGATTACTTCCATGCATG+GGG - Chr2:83386562-83386581 MsG0280011390.01.T01:CDS 45.0%
CTTGAAAAGGACCTTGTGGT+GGG - Chr2:83386914-83386933 MsG0280011390.01.T01:intron 45.0%
GCACCAAATACCGTATCAGT+TGG - Chr2:83387243-83387262 MsG0280011390.01.T01:intron 45.0%
GCACCAACTGATACGGTATT+TGG + Chr2:83387249-83387268 None:intergenic 45.0%
GGTTAGAAGCTCACTAAGCA+TGG + Chr2:83387301-83387320 None:intergenic 45.0%
TCCTGGATTACTTCCATGCA+TGG - Chr2:83386560-83386579 MsG0280011390.01.T01:CDS 45.0%
TCTTGAAAAGGACCTTGTGG+TGG - Chr2:83386913-83386932 MsG0280011390.01.T01:intron 45.0%
TGAGCTGAATTGTCCACATG+AGG + Chr2:83387763-83387782 None:intergenic 45.0%
! CGTTTTGCATCATATCCTGG+TGG + Chr2:83387871-83387890 None:intergenic 45.0%
! CTTCATTTTCACCCACCACA+AGG + Chr2:83386928-83386947 None:intergenic 45.0%
! TACCGTATCAGTTGGTGCAT+CGG - Chr2:83387251-83387270 MsG0280011390.01.T01:intron 45.0%
! TCACGGAACACTGTCCTTTT+TGG + Chr2:83387415-83387434 None:intergenic 45.0%
!! CTCTGTGTTTTTGACCGTAG+AGG + Chr2:83387556-83387575 None:intergenic 45.0%
!! GGTGCACTTTTTGGACTTCT+GGG - Chr2:83387273-83387292 MsG0280011390.01.T01:intron 45.0%
!! TTCTGCAGGTTGAGGGTATT+AGG - Chr2:83386887-83386906 MsG0280011390.01.T01:intron 45.0%
AAGGACAGTGTTCCGTGACT+CGG - Chr2:83387417-83387436 MsG0280011390.01.T01:CDS 50.0%
ACCCGATGCACCAACTGATA+CGG + Chr2:83387256-83387275 None:intergenic 50.0%
AGGGAGAAGATTCTCACGTG+CGG + Chr2:83386350-83386369 None:intergenic 50.0%
ATGTAGAAAGTAGGCGGTGG+TGG + Chr2:83386135-83386154 None:intergenic 50.0%
ATTCTCACGTGCGGACAGAA+GGG + Chr2:83386341-83386360 None:intergenic 50.0%
CCCATGCATGGAAGTAATCC+AGG + Chr2:83386564-83386583 None:intergenic 50.0%
CGCCAACACAATGGTTCTCA+TGG - Chr2:83386160-83386179 MsG0280011390.01.T01:intron 50.0%
GCGTAATGACTGACAAGACC+AGG + Chr2:83387927-83387946 None:intergenic 50.0%
GGTGGCATGTAGAAAGTAGG+CGG + Chr2:83386141-83386160 None:intergenic 50.0%
! ACCGTATCAGTTGGTGCATC+GGG - Chr2:83387252-83387271 MsG0280011390.01.T01:intron 50.0%
!! AAGAGGCGTTGTAGCCTCTA+CGG - Chr2:83387539-83387558 MsG0280011390.01.T01:intron 50.0%
!! GGGTGCACTTTTTGGACTTC+TGG - Chr2:83387272-83387291 MsG0280011390.01.T01:intron 50.0%
ACATGCCACCGCCAACACAA+TGG - Chr2:83386151-83386170 MsG0280011390.01.T01:intron 55.0%
AGGACAGTGTTCCGTGACTC+GGG - Chr2:83387418-83387437 MsG0280011390.01.T01:CDS 55.0%
AGGGTGGGTGTGTGCCAAAA+AGG - Chr2:83387398-83387417 MsG0280011390.01.T01:CDS 55.0%
GATTCTCACGTGCGGACAGA+AGG + Chr2:83386342-83386361 None:intergenic 55.0%
GCCGCCTCAATATCGGAGAA+CGG + Chr2:83386099-83386118 None:intergenic 55.0%
GCCGTTCTCCGATATTGAGG+CGG - Chr2:83386095-83386114 MsG0280011390.01.T01:CDS 55.0%
GGCATGTAGAAAGTAGGCGG+TGG + Chr2:83386138-83386157 None:intergenic 55.0%
GGCGGTGGCATGTAGAAAGT+AGG + Chr2:83386144-83386163 None:intergenic 55.0%
GTCGCCGTTCTCCGATATTG+AGG - Chr2:83386092-83386111 MsG0280011390.01.T01:CDS 55.0%
! GAGAACCATTGTGTTGGCGG+TGG + Chr2:83386159-83386178 None:intergenic 55.0%
! GGTGCATCGGGTGCACTTTT+TGG - Chr2:83387264-83387283 MsG0280011390.01.T01:intron 55.0%
! TAGAAAGTAGGCGGTGGTGG+CGG + Chr2:83386132-83386151 None:intergenic 55.0%
GGACAGAAGGGCCAAGGAGA+GGG + Chr2:83386329-83386348 None:intergenic 60.0%
GGACAGTGTTCCGTGACTCG+GGG - Chr2:83387419-83387438 MsG0280011390.01.T01:CDS 60.0%
! AGAAAGTAGGCGGTGGTGGC+GGG + Chr2:83386131-83386150 None:intergenic 60.0%
ACGTGCGGACAGAAGGGCCA+AGG + Chr2:83386335-83386354 None:intergenic 65.0%
CGGACAGAAGGGCCAAGGAG+AGG + Chr2:83386330-83386349 None:intergenic 65.0%
! GAAAGTAGGCGGTGGTGGCG+GGG + Chr2:83386130-83386149 None:intergenic 65.0%
! GTTCCGTGACTCGGGGTGCA+GGG - Chr2:83387426-83387445 MsG0280011390.01.T01:CDS 65.0%
! TGTTCCGTGACTCGGGGTGC+AGG - Chr2:83387425-83387444 MsG0280011390.01.T01:CDS 65.0%
!! AAAGTAGGCGGTGGTGGCGG+GGG + Chr2:83386129-83386148 None:intergenic 65.0%
CCACCCTGCACCCCGAGTCA+CGG + Chr2:83387432-83387451 None:intergenic 70.0%
! CCGTGACTCGGGGTGCAGGG+TGG - Chr2:83387429-83387448 MsG0280011390.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 83386081 83388340 83386081 ID=MsG0280011390.01;Name=MsG0280011390.01
Chr2 mRNA 83386081 83388340 83386081 ID=MsG0280011390.01.T01;Parent=MsG0280011390.01;Name=MsG0280011390.01.T01;_AED=0.33;_eAED=0.34;_QI=0|0|0|1|1|1|5|0|316
Chr2 exon 83388069 83388340 83388069 ID=MsG0280011390.01.T01:exon:14791;Parent=MsG0280011390.01.T01
Chr2 exon 83387363 83387526 83387363 ID=MsG0280011390.01.T01:exon:14792;Parent=MsG0280011390.01.T01
Chr2 exon 83387077 83387255 83387077 ID=MsG0280011390.01.T01:exon:14793;Parent=MsG0280011390.01.T01
Chr2 exon 83386465 83386721 83386465 ID=MsG0280011390.01.T01:exon:14794;Parent=MsG0280011390.01.T01
Chr2 exon 83386081 83386159 83386081 ID=MsG0280011390.01.T01:exon:14795;Parent=MsG0280011390.01.T01
Chr2 CDS 83388069 83388340 83388069 ID=MsG0280011390.01.T01:cds;Parent=MsG0280011390.01.T01
Chr2 CDS 83387363 83387526 83387363 ID=MsG0280011390.01.T01:cds;Parent=MsG0280011390.01.T01
Chr2 CDS 83387077 83387255 83387077 ID=MsG0280011390.01.T01:cds;Parent=MsG0280011390.01.T01
Chr2 CDS 83386465 83386721 83386465 ID=MsG0280011390.01.T01:cds;Parent=MsG0280011390.01.T01
Chr2 CDS 83386081 83386159 83386081 ID=MsG0280011390.01.T01:cds;Parent=MsG0280011390.01.T01
Gene Sequence

>MsG0280011390.01.T01

ATGGGGAAAAAGTCGCCGTTCTCCGATATTGAGGCGGCTCGTTATCCCCCGCCACCACCGCCTACTTTCTACATGCCACCGCCAACACAATGGTTCTCATGGTTGGTGCCACTCATTTTTTTAGCCAATATTGCAATGTTCGTGTATAGCATGTATATCAATGATTGCCCTGGCTATTTGAATGAAGATGATTGCCTTTGGTATCAATATTTGGGAAGATTTTCTTTTCAACCTTTCAATGAAAACCCTCTCCTTGGCCCTTCTGTCCGCACGTTGAGGGTATTAGGAGCTCTTGAAAAGGACCTTGTGGTGGGTGAAAATGAAGTATGGCGGTTCTTTACTTGCATGTTTCTTCATGCAGGAGTTATACATTTACTTGCCAATATGTTTAGTCTTTTATTCATAGGAGTTCGCCTTGAGAATGAATTTGGATTTTTGAAAATTGGAGTTCTATATTTGCTTTCTGGCTTTGGTGGAAGTTTGTTATCTATTTTGCATTTGGGAGATGCTAAAGCACCAAATACCGTATCAGTTGGTGCATCGGGTGCACTTTTTGGACTTCTGGGAGCCATGCTTAGTGAGCTTCTAACCAATTGGACTATCTATTTAAATAAGTGTGCAGCTCTAACAAGTCTACTTCTCATCATTGGCCTAAATTTGGCTGTTGGATTTATACCTCATGTGGACAATTCAGCTCATATAGGAGGATTCCTATCAGGATTTTTCCTTGGTTTTGTTATTTTAATGCGCCCTCAATTTGGTTATGTGAACAACAAATATATACCACCAGGATATGATGCAAAACGTAAATCCAAGTATAAAGGCTATCAGTATTTCTTCCTGGTCTTGTCAGTCATTACGCTACTTATCGGATATGCCTATGGCTTAGCTACATTGTACATAGGAGAATCAAATGATGTATTTTCCTTCTTAGCGAATACTGAAAGTTAA
Protein sequence

>MsG0280011390.01.T01

MGKKSPFSDIEAARYPPPPPPTFYMPPPTQWFSWLVPLIFLANIAMFVYSMYINDCPGYLNEDDCLWYQYLGRFSFQPFNENPLLGPSVRTLRVLGALEKDLVVGENEVWRFFTCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKIGVLYLLSGFGGSLLSILHLGDAKAPNTVSVGASGALFGLLGAMLSELLTNWTIYLNKCAALTSLLLIIGLNLAVGFIPHVDNSAHIGGFLSGFFLGFVILMRPQFGYVNNKYIPPGYDAKRKSKYKGYQYFFLVLSVITLLIGYAYGLATLYIGESNDVFSFLANTES*