Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015626.01.T01 | XP_003601147.2 | 97.518 | 282 | 7 | 0 | 1 | 282 | 60 | 341 | 0 | 567 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015626.01.T01 | F4I8K2 | 55.789 | 285 | 123 | 2 | 1 | 284 | 66 | 348 | 1.43E-111 | 329 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015626.01.T01 | G7J473 | 97.518 | 282 | 7 | 0 | 1 | 282 | 60 | 341 | 0.0 | 567 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0380015626.01 | MsG0280011390.01 | PPI |
MsG0680033623.01 | MsG0380015626.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015626.01.T01 | MTR_3g073530 | 97.518 | 282 | 7 | 0 | 1 | 282 | 60 | 341 | 0.0 | 567 |
MsG0380015626.01.T01 | MTR_4g021755 | 45.714 | 280 | 147 | 3 | 1 | 280 | 62 | 336 | 3.11e-80 | 248 |
MsG0380015626.01.T01 | MTR_7g498280 | 46.403 | 278 | 139 | 2 | 1 | 275 | 55 | 325 | 2.18e-78 | 241 |
MsG0380015626.01.T01 | MTR_2g097210 | 43.357 | 286 | 152 | 3 | 1 | 282 | 64 | 343 | 1.45e-74 | 233 |
MsG0380015626.01.T01 | MTR_7g061780 | 47.170 | 265 | 132 | 3 | 1 | 264 | 46 | 303 | 1.08e-72 | 226 |
MsG0380015626.01.T01 | MTR_1g101310 | 42.349 | 281 | 140 | 2 | 1 | 275 | 53 | 317 | 1.35e-68 | 216 |
MsG0380015626.01.T01 | MTR_2g097210 | 45.679 | 243 | 125 | 2 | 1 | 242 | 64 | 300 | 1.23e-60 | 194 |
MsG0380015626.01.T01 | MTR_2g103600 | 44.355 | 248 | 130 | 3 | 1 | 241 | 51 | 297 | 1.11e-59 | 192 |
MsG0380015626.01.T01 | MTR_2g088290 | 27.839 | 273 | 137 | 7 | 5 | 277 | 5 | 217 | 3.08e-20 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380015626.01.T01 | AT1G77860 | 55.789 | 285 | 123 | 2 | 1 | 284 | 66 | 348 | 1.45e-112 | 329 |
MsG0380015626.01.T01 | AT1G77860 | 55.124 | 283 | 124 | 2 | 1 | 282 | 66 | 346 | 5.67e-110 | 323 |
MsG0380015626.01.T01 | AT2G29050 | 45.907 | 281 | 147 | 3 | 1 | 281 | 74 | 349 | 5.43e-81 | 249 |
MsG0380015626.01.T01 | AT5G07250 | 42.910 | 268 | 140 | 2 | 11 | 275 | 88 | 345 | 1.60e-73 | 229 |
MsG0380015626.01.T01 | AT1G63120 | 43.011 | 279 | 141 | 3 | 1 | 273 | 51 | 317 | 1.74e-73 | 228 |
MsG0380015626.01.T01 | AT1G12750 | 42.652 | 279 | 145 | 4 | 1 | 273 | 38 | 307 | 2.96e-72 | 224 |
MsG0380015626.01.T01 | AT1G12750 | 42.652 | 279 | 145 | 4 | 1 | 273 | 38 | 307 | 2.96e-72 | 224 |
MsG0380015626.01.T01 | AT1G12750 | 42.652 | 279 | 145 | 4 | 1 | 273 | 38 | 307 | 2.96e-72 | 224 |
MsG0380015626.01.T01 | AT1G12750 | 42.652 | 279 | 145 | 4 | 1 | 273 | 38 | 307 | 2.96e-72 | 224 |
MsG0380015626.01.T01 | AT1G12750 | 42.652 | 279 | 145 | 4 | 1 | 273 | 38 | 307 | 2.96e-72 | 224 |
MsG0380015626.01.T01 | AT3G53780 | 40.000 | 280 | 158 | 4 | 1 | 280 | 84 | 353 | 5.36e-66 | 211 |
MsG0380015626.01.T01 | AT2G29050 | 46.429 | 224 | 91 | 2 | 1 | 196 | 74 | 296 | 2.37e-61 | 198 |
MsG0380015626.01.T01 | AT3G53780 | 46.078 | 204 | 109 | 1 | 1 | 204 | 84 | 286 | 3.47e-57 | 186 |
MsG0380015626.01.T01 | AT1G52580 | 45.082 | 244 | 124 | 5 | 1 | 242 | 51 | 286 | 6.10e-56 | 183 |
MsG0380015626.01.T01 | AT4G23070 | 42.066 | 271 | 150 | 2 | 1 | 271 | 49 | 312 | 1.22e-55 | 182 |
MsG0380015626.01.T01 | AT3G53780 | 36.975 | 238 | 141 | 3 | 43 | 280 | 1 | 229 | 7.65e-53 | 174 |
MsG0380015626.01.T01 | AT1G12750 | 51.316 | 152 | 71 | 1 | 1 | 149 | 38 | 189 | 3.89e-48 | 159 |
MsG0380015626.01.T01 | AT1G12750 | 51.316 | 152 | 71 | 1 | 1 | 149 | 38 | 189 | 6.52e-48 | 159 |
MsG0380015626.01.T01 | AT5G07250 | 34.717 | 265 | 119 | 3 | 11 | 275 | 88 | 298 | 1.38e-46 | 158 |
MsG0380015626.01.T01 | AT1G25290 | 33.333 | 150 | 96 | 3 | 49 | 197 | 159 | 305 | 8.28e-16 | 76.6 |
MsG0380015626.01.T01 | AT1G25290 | 31.410 | 156 | 98 | 3 | 49 | 197 | 159 | 312 | 2.38e-14 | 72.8 |
Find 46 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTCTTCTTGCAGTTCTTTA+TGG | 0.123493 | 3:-72676008 | MsG0380015626.01.T01:CDS |
GGTTCTTCTGGTGCTCTATT+TGG | 0.207313 | 3:-72676585 | MsG0380015626.01.T01:CDS |
ATCCCTGCTGTTGGTTCTTC+TGG | 0.258304 | 3:-72676597 | MsG0380015626.01.T01:CDS |
CATTGCTTTCAGAACTTGTT+TGG | 0.286947 | 3:-72676551 | MsG0380015626.01.T01:CDS |
AGCTAGACAGACCAGTTTCT+AGG | 0.291064 | 3:-72676201 | MsG0380015626.01.T01:CDS |
TTGTTGTAGGTTGGATGAAA+TGG | 0.322277 | 3:-72677254 | MsG0380015626.01.T01:intron |
ATTCGCCTAGAGCAGGAGTT+TGG | 0.324869 | 3:-72677109 | MsG0380015626.01.T01:CDS |
CTTTGCTTGGAGCTACTTGT+TGG | 0.356724 | 3:+72676278 | None:intergenic |
CTGGAAATATCATACCAAAA+AGG | 0.371080 | 3:-72676526 | MsG0380015626.01.T01:intron |
TTTGTGTGCAACTTCCTCAT+TGG | 0.377263 | 3:-72676391 | MsG0380015626.01.T01:CDS |
TTTCAGAACTTGTTTGGAAC+TGG | 0.393026 | 3:-72676545 | MsG0380015626.01.T01:CDS |
GGTGCTCTATTTGGATTACT+AGG | 0.406774 | 3:-72676576 | MsG0380015626.01.T01:CDS |
TTCGCCTAGAGCAGGAGTTT+GGG | 0.411077 | 3:-72677108 | MsG0380015626.01.T01:CDS |
AGAGAAACAATCCTAGAAAC+TGG | 0.416199 | 3:+72676190 | None:intergenic |
TTCTATATATGCAGATTGGC+TGG | 0.416350 | 3:-72676032 | MsG0380015626.01.T01:intron |
AGTGCAATCACCGTGAGAAT+TGG | 0.418544 | 3:+72677617 | None:intergenic |
TCAATTTGATCTCCTTTGCT+TGG | 0.427296 | 3:+72676265 | None:intergenic |
CTTGCTGAAAATCCTCTGTT+AGG | 0.431045 | 3:-72677561 | MsG0380015626.01.T01:CDS |
TGACGGAACGTCATCAAACT+TGG | 0.448219 | 3:-72677210 | MsG0380015626.01.T01:CDS |
CTTCAAAACATCCCTGCTGT+TGG | 0.452199 | 3:-72676606 | MsG0380015626.01.T01:CDS |
AAAGGAATACAGTCAACATA+TGG | 0.463674 | 3:+72675954 | None:intergenic |
CTCTGCAGTGTCATCTATGT+TGG | 0.465016 | 3:-72677133 | MsG0380015626.01.T01:CDS |
TGTTGTAGGTTGGATGAAAT+GGG | 0.486882 | 3:-72677253 | MsG0380015626.01.T01:intron |
TTTATATCAGGATTCCTCCT+TGG | 0.489553 | 3:-72676328 | MsG0380015626.01.T01:CDS |
ACTGTATTCCTTTCACAAGC+TGG | 0.494213 | 3:-72675944 | MsG0380015626.01.T01:CDS |
TTAGCTGTATACCTCACAAA+AGG | 0.504592 | 3:+72675902 | None:intergenic |
AACACTCACTTTGACATGGA+AGG | 0.515961 | 3:+72677537 | None:intergenic |
AACGAGAACCTTCCAAGAGA+TGG | 0.532436 | 3:+72677591 | None:intergenic |
GAGCTACTTGTTGGAACTGA+GGG | 0.533208 | 3:+72676287 | None:intergenic |
TGTTGGAATTCGCCTAGAGC+AGG | 0.535446 | 3:-72677116 | MsG0380015626.01.T01:CDS |
TTGCAGTGCCAGCTTGTGAA+AGG | 0.539450 | 3:+72675936 | None:intergenic |
GCACCAGAAGAACCAACAGC+AGG | 0.542650 | 3:+72676594 | None:intergenic |
ACGGCCCAAACTCCTGCTCT+AGG | 0.571688 | 3:+72677104 | None:intergenic |
GGAGCTACTTGTTGGAACTG+AGG | 0.580200 | 3:+72676286 | None:intergenic |
TGCAGAGATTGATCGCAAGA+TGG | 0.597021 | 3:+72677149 | None:intergenic |
AAACATACAGCAGAGTGAAG+AGG | 0.602409 | 3:+72676164 | None:intergenic |
CACCAGAAGAACCAACAGCA+GGG | 0.607545 | 3:+72676595 | None:intergenic |
TTTGAACACTCACTTTGACA+TGG | 0.608414 | 3:+72677533 | None:intergenic |
CAACAAGTAGCTCCAAGCAA+AGG | 0.615218 | 3:-72676277 | MsG0380015626.01.T01:CDS |
GATTGCTTCACCAATTCTCA+CGG | 0.629587 | 3:-72677627 | MsG0380015626.01.T01:CDS |
CGAATAGAAGAACAGTTCCA+AGG | 0.630132 | 3:+72676311 | None:intergenic |
ACATCAACAGTTATTGCACA+TGG | 0.663755 | 3:-72675980 | MsG0380015626.01.T01:CDS |
CATAAGGCAGAAAACCAATG+AGG | 0.670425 | 3:+72676377 | None:intergenic |
GACATGGAAGGACCTAACAG+AGG | 0.687166 | 3:+72677549 | None:intergenic |
AGCTACTTGTTGGAACTGAG+GGG | 0.687207 | 3:+72676288 | None:intergenic |
ATAGAAGAACAGTTCCAAGG+AGG | 0.740367 | 3:+72676314 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTCTCAAAATATTAT+TGG | - | Chr3:72676727-72676746 | MsG0380015626.01.T01:intron | 10.0% |
!!! | TTTTATTCTATTTAATTTGA+GGG | - | Chr3:72677423-72677442 | MsG0380015626.01.T01:intron | 10.0% |
!! | AATTAGAAAAGAAATTTACA+CGG | + | Chr3:72676459-72676478 | None:intergenic | 15.0% |
!!! | AATTTCTTTTCTAATTCATT+TGG | - | Chr3:72676463-72676482 | MsG0380015626.01.T01:intron | 15.0% |
!!! | GTTTTATTCTATTTAATTTG+AGG | - | Chr3:72677422-72677441 | MsG0380015626.01.T01:intron | 15.0% |
!!! | TTTATTCTATTTAATTTGAG+GGG | - | Chr3:72677424-72677443 | MsG0380015626.01.T01:intron | 15.0% |
!!! | TTTTTGATCAATTTTTTCTT+TGG | - | Chr3:72677087-72677106 | MsG0380015626.01.T01:intron | 15.0% |
!!! | TGAAATTGAACTTCATTTTA+GGG | - | Chr3:72676203-72676222 | MsG0380015626.01.T01:CDS | 20.0% |
!!! | TGAATTTGAGTTTCTAATTT+AGG | - | Chr3:72676055-72676074 | MsG0380015626.01.T01:intron | 20.0% |
!!! | TTCATTTTAGGGTTAATTTA+GGG | - | Chr3:72676214-72676233 | MsG0380015626.01.T01:CDS | 20.0% |
!!! | TTTGTTTTTAATTTGCAGTA+AGG | - | Chr3:72676855-72676874 | MsG0380015626.01.T01:intron | 20.0% |
! | CATCAAATCATTAAATGAGA+AGG | - | Chr3:72677482-72677501 | MsG0380015626.01.T01:intron | 25.0% |
! | CTGTGTTTAATGTCTAATTT+AGG | - | Chr3:72676107-72676126 | MsG0380015626.01.T01:intron | 25.0% |
! | CTTGAAAAATTGTCTACATA+AGG | + | Chr3:72677183-72677202 | None:intergenic | 25.0% |
! | TTCTTTCTATATATGCAGAT+TGG | - | Chr3:72677505-72677524 | MsG0380015626.01.T01:intron | 25.0% |
! | TTTGCATCATTTCAATCAAT+TGG | + | Chr3:72676636-72676655 | None:intergenic | 25.0% |
!! | GTGAAATTGAACTTCATTTT+AGG | - | Chr3:72676202-72676221 | MsG0380015626.01.T01:CDS | 25.0% |
!!! | CTTCATTTTAGGGTTAATTT+AGG | - | Chr3:72676213-72676232 | MsG0380015626.01.T01:CDS | 25.0% |
!!! | TATATACTATCTGCTTTTGT+GGG | - | Chr3:72676890-72676909 | MsG0380015626.01.T01:intron | 25.0% |
!!! | TTGATCAATTTTTTCTTTGG+TGG | - | Chr3:72677090-72677109 | MsG0380015626.01.T01:intron | 25.0% |
!!! | TTTTAATTTGCAGTAAGGAT+TGG | - | Chr3:72676860-72676879 | MsG0380015626.01.T01:intron | 25.0% |
AAAGGAATACAGTCAACATA+TGG | + | Chr3:72677590-72677609 | None:intergenic | 30.0% | |
AAAGTGAAATGAACTGTACT+TGG | - | Chr3:72676147-72676166 | MsG0380015626.01.T01:intron | 30.0% | |
AAGAAAAAGAGAAGCCATTA+AGG | + | Chr3:72676918-72676937 | None:intergenic | 30.0% | |
CTGGAAATATCATACCAAAA+AGG | - | Chr3:72677015-72677034 | MsG0380015626.01.T01:intron | 30.0% | |
TTTAATGATTTGATGCATGC+CGG | + | Chr3:72677477-72677496 | None:intergenic | 30.0% | |
! | GGAATTTTATAATGCAACGA+TGG | - | Chr3:72676244-72676263 | MsG0380015626.01.T01:CDS | 30.0% |
! | GGGTTAATTTAGGGTTTAAA+AGG | - | Chr3:72676223-72676242 | MsG0380015626.01.T01:CDS | 30.0% |
! | GTTTCTAATTTAGGTTTCAG+AGG | - | Chr3:72676064-72676083 | MsG0380015626.01.T01:intron | 30.0% |
! | TCTACGAAAGAACTTTTTGA+CGG | - | Chr3:72676314-72676333 | MsG0380015626.01.T01:CDS | 30.0% |
! | TGATTTTGTAATGTCAGTGT+TGG | - | Chr3:72676559-72676578 | MsG0380015626.01.T01:CDS | 30.0% |
!! | CTATATACTATCTGCTTTTG+TGG | - | Chr3:72676889-72676908 | MsG0380015626.01.T01:intron | 30.0% |
!! | CTGTACTTGGTGTTTAATTT+AGG | - | Chr3:72676160-72676179 | MsG0380015626.01.T01:intron | 30.0% |
!!! | GTAGACAATTTTTCAAGCAT+TGG | - | Chr3:72677186-72677205 | MsG0380015626.01.T01:CDS | 30.0% |
AACAATGAGAAACAGCTATG+AGG | + | Chr3:72677055-72677074 | None:intergenic | 35.0% | |
ACACCGGATACACATTTAAT+CGG | - | Chr3:72676599-72676618 | MsG0380015626.01.T01:CDS | 35.0% | |
ACATCAACAGTTATTGCACA+TGG | - | Chr3:72677561-72677580 | MsG0380015626.01.T01:CDS | 35.0% | |
AGAGAAACAATCCTAGAAAC+TGG | + | Chr3:72677354-72677373 | None:intergenic | 35.0% | |
ATCTATAAAGCAGAGAACAG+TGG | + | Chr3:72676778-72676797 | None:intergenic | 35.0% | |
CAACCGATTAAATGTGTATC+CGG | + | Chr3:72676605-72676624 | None:intergenic | 35.0% | |
CTTCTATCTATTGTGCTTTC+CGG | - | Chr3:72677455-72677474 | MsG0380015626.01.T01:intron | 35.0% | |
TCAATTTGATCTCCTTTGCT+TGG | + | Chr3:72677279-72677298 | None:intergenic | 35.0% | |
TGTCTTCTTGCAGTTCTTTA+TGG | - | Chr3:72677533-72677552 | MsG0380015626.01.T01:intron | 35.0% | |
TTAGCTGTATACCTCACAAA+AGG | + | Chr3:72677642-72677661 | None:intergenic | 35.0% | |
TTCTATATATGCAGATTGGC+TGG | - | Chr3:72677509-72677528 | MsG0380015626.01.T01:intron | 35.0% | |
TTGAATGTATCCACATGTGT+CGG | + | Chr3:72676702-72676721 | None:intergenic | 35.0% | |
TTTATATCAGGATTCCTCCT+TGG | - | Chr3:72677213-72677232 | MsG0380015626.01.T01:CDS | 35.0% | |
TTTGAACACTCACTTTGACA+TGG | + | Chr3:72676011-72676030 | None:intergenic | 35.0% | |
! | CATTGCTTTCAGAACTTGTT+TGG | - | Chr3:72676990-72677009 | MsG0380015626.01.T01:intron | 35.0% |
! | CGAAAAACTAAGCACCTTTT+TGG | + | Chr3:72677032-72677051 | None:intergenic | 35.0% |
! | TGTTGTAGGTTGGATGAAAT+GGG | - | Chr3:72676288-72676307 | MsG0380015626.01.T01:CDS | 35.0% |
! | TTGTTGTAGGTTGGATGAAA+TGG | - | Chr3:72676287-72676306 | MsG0380015626.01.T01:CDS | 35.0% |
! | TTTCAGAACTTGTTTGGAAC+TGG | - | Chr3:72676996-72677015 | MsG0380015626.01.T01:intron | 35.0% |
!!! | AGCATTGGTGGTTTTATATC+AGG | - | Chr3:72677201-72677220 | MsG0380015626.01.T01:CDS | 35.0% |
!!! | GACAATTTTTCAAGCATTGG+TGG | - | Chr3:72677189-72677208 | MsG0380015626.01.T01:CDS | 35.0% |
!!! | TTTTTTCTTTGGTGGAATGC+AGG | - | Chr3:72677098-72677117 | MsG0380015626.01.T01:intron | 35.0% |
AAAAGTCCAGCGTGCAAAAA+TGG | + | Chr3:72676372-72676391 | None:intergenic | 40.0% | |
AAACATACAGCAGAGTGAAG+AGG | + | Chr3:72677380-72677399 | None:intergenic | 40.0% | |
AACACTCACTTTGACATGGA+AGG | + | Chr3:72676007-72676026 | None:intergenic | 40.0% | |
AATCACTTCCACTTCCACTT+CGG | + | Chr3:72676544-72676563 | None:intergenic | 40.0% | |
ACTGTATTCCTTTCACAAGC+TGG | - | Chr3:72677597-72677616 | MsG0380015626.01.T01:CDS | 40.0% | |
ATAGAAGAACAGTTCCAAGG+AGG | + | Chr3:72677230-72677249 | None:intergenic | 40.0% | |
CATAAGGCAGAAAACCAATG+AGG | + | Chr3:72677167-72677186 | None:intergenic | 40.0% | |
CGAATAGAAGAACAGTTCCA+AGG | + | Chr3:72677233-72677252 | None:intergenic | 40.0% | |
CGGATACACATTTAATCGGT+TGG | - | Chr3:72676603-72676622 | MsG0380015626.01.T01:CDS | 40.0% | |
CTTGCTGAAAATCCTCTGTT+AGG | - | Chr3:72675980-72675999 | MsG0380015626.01.T01:CDS | 40.0% | |
GATTGCTTCACCAATTCTCA+CGG | - | Chr3:72675914-72675933 | MsG0380015626.01.T01:CDS | 40.0% | |
GGTGCTCTATTTGGATTACT+AGG | - | Chr3:72676965-72676984 | MsG0380015626.01.T01:intron | 40.0% | |
TTTGTGTGCAACTTCCTCAT+TGG | - | Chr3:72677150-72677169 | MsG0380015626.01.T01:CDS | 40.0% | |
! | AACAGAGGATTTTCAGCAAG+AGG | + | Chr3:72675980-72675999 | None:intergenic | 40.0% |
! | AGACAGAGAAACCTTTTGTG+AGG | - | Chr3:72677628-72677647 | MsG0380015626.01.T01:CDS | 40.0% |
! | CTGTTGTTGTTGTTGTAGGT+TGG | - | Chr3:72676278-72676297 | MsG0380015626.01.T01:CDS | 40.0% |
! | GATTGCACTTTTCCATCTCT+TGG | - | Chr3:72675938-72675957 | MsG0380015626.01.T01:CDS | 40.0% |
! | GCACTGACATTGTGTATTGA+AGG | - | Chr3:72676664-72676683 | MsG0380015626.01.T01:CDS | 40.0% |
! | GTTGCTGTTGTTGTTGTTGT+AGG | - | Chr3:72676274-72676293 | MsG0380015626.01.T01:CDS | 40.0% |
! | TTGTGTATTGAAGGCGTGTT+TGG | - | Chr3:72676673-72676692 | MsG0380015626.01.T01:intron | 40.0% |
!! | TGTTTCTATGTTTTCCGCAC+TGG | - | Chr3:72676490-72676509 | MsG0380015626.01.T01:intron | 40.0% |
AACGAGAACCTTCCAAGAGA+TGG | + | Chr3:72675953-72675972 | None:intergenic | 45.0% | |
ACGACACATAGATACCGAAG+TGG | - | Chr3:72676527-72676546 | MsG0380015626.01.T01:CDS | 45.0% | |
AGCTAGACAGACCAGTTTCT+AGG | - | Chr3:72677340-72677359 | MsG0380015626.01.T01:intron | 45.0% | |
AGTGCAATCACCGTGAGAAT+TGG | + | Chr3:72675927-72675946 | None:intergenic | 45.0% | |
CAACAAGTAGCTCCAAGCAA+AGG | - | Chr3:72677264-72677283 | MsG0380015626.01.T01:intron | 45.0% | |
CATAGATACCGAAGTGGAAG+TGG | - | Chr3:72676533-72676552 | MsG0380015626.01.T01:CDS | 45.0% | |
CTCTGCAGTGTCATCTATGT+TGG | - | Chr3:72676408-72676427 | MsG0380015626.01.T01:CDS | 45.0% | |
CTTCAAAACATCCCTGCTGT+TGG | - | Chr3:72676935-72676954 | MsG0380015626.01.T01:intron | 45.0% | |
CTTTGCTTGGAGCTACTTGT+TGG | + | Chr3:72677266-72677285 | None:intergenic | 45.0% | |
GGTTCTTCTGGTGCTCTATT+TGG | - | Chr3:72676956-72676975 | MsG0380015626.01.T01:intron | 45.0% | |
GTGAGACATGTGTTAGACAC+CGG | - | Chr3:72676583-72676602 | MsG0380015626.01.T01:CDS | 45.0% | |
TGACGGAACGTCATCAAACT+TGG | - | Chr3:72676331-72676350 | MsG0380015626.01.T01:CDS | 45.0% | |
TGCAGAGATTGATCGCAAGA+TGG | + | Chr3:72676395-72676414 | None:intergenic | 45.0% | |
! | AGCTACTTGTTGGAACTGAG+GGG | + | Chr3:72677256-72677275 | None:intergenic | 45.0% |
! | GAGCTACTTGTTGGAACTGA+GGG | + | Chr3:72677257-72677276 | None:intergenic | 45.0% |
! | GCACTTTTCCATCTCTTGGA+AGG | - | Chr3:72675942-72675961 | MsG0380015626.01.T01:CDS | 45.0% |
! | TGCTTTTGTGGGTGCCTTAA+TGG | - | Chr3:72676901-72676920 | MsG0380015626.01.T01:intron | 45.0% |
!! | ACGTTTCCATTTTTGCACGC+TGG | - | Chr3:72676363-72676382 | MsG0380015626.01.T01:CDS | 45.0% |
ATTCGCCTAGAGCAGGAGTT+TGG | - | Chr3:72676432-72676451 | MsG0380015626.01.T01:intron | 50.0% | |
CACCAGAAGAACCAACAGCA+GGG | + | Chr3:72676949-72676968 | None:intergenic | 50.0% | |
CGGTATCTATGTGTCGTGTC+CGG | + | Chr3:72676524-72676543 | None:intergenic | 50.0% | |
GACATGGAAGGACCTAACAG+AGG | + | Chr3:72675995-72676014 | None:intergenic | 50.0% | |
TGTTGGAATTCGCCTAGAGC+AGG | - | Chr3:72676425-72676444 | MsG0380015626.01.T01:intron | 50.0% | |
TTCGCCTAGAGCAGGAGTTT+GGG | - | Chr3:72676433-72676452 | MsG0380015626.01.T01:intron | 50.0% | |
TTGCAGTGCCAGCTTGTGAA+AGG | + | Chr3:72677608-72677627 | None:intergenic | 50.0% | |
! | GGAGCTACTTGTTGGAACTG+AGG | + | Chr3:72677258-72677277 | None:intergenic | 50.0% |
!! | ATCCCTGCTGTTGGTTCTTC+TGG | - | Chr3:72676944-72676963 | MsG0380015626.01.T01:intron | 50.0% |
!! | TGTTTGGTGTCCGACACATG+TGG | - | Chr3:72676689-72676708 | MsG0380015626.01.T01:intron | 50.0% |
GCACCAGAAGAACCAACAGC+AGG | + | Chr3:72676950-72676969 | None:intergenic | 55.0% | |
! | TTCCGCACTGGCACAAACAC+CGG | - | Chr3:72676502-72676521 | MsG0380015626.01.T01:intron | 55.0% |
ACGGCCCAAACTCCTGCTCT+AGG | + | Chr3:72676440-72676459 | None:intergenic | 60.0% | |
GTCCGGTGTTTGTGCCAGTG+CGG | + | Chr3:72676507-72676526 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 72675902 | 72677661 | 72675902 | ID=MsG0380015626.01;Name=MsG0380015626.01 |
Chr3 | mRNA | 72675902 | 72677661 | 72675902 | ID=MsG0380015626.01.T01;Parent=MsG0380015626.01;Name=MsG0380015626.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|5|0|284 |
Chr3 | exon | 72677546 | 72677661 | 72677546 | ID=MsG0380015626.01.T01:exon:744;Parent=MsG0380015626.01.T01 |
Chr3 | exon | 72677104 | 72677267 | 72677104 | ID=MsG0380015626.01.T01:exon:743;Parent=MsG0380015626.01.T01 |
Chr3 | exon | 72676527 | 72676690 | 72676527 | ID=MsG0380015626.01.T01:exon:742;Parent=MsG0380015626.01.T01 |
Chr3 | exon | 72676172 | 72676443 | 72676172 | ID=MsG0380015626.01.T01:exon:741;Parent=MsG0380015626.01.T01 |
Chr3 | exon | 72675902 | 72676040 | 72675902 | ID=MsG0380015626.01.T01:exon:740;Parent=MsG0380015626.01.T01 |
Chr3 | CDS | 72677546 | 72677661 | 72677546 | ID=MsG0380015626.01.T01:cds;Parent=MsG0380015626.01.T01 |
Chr3 | CDS | 72677104 | 72677267 | 72677104 | ID=MsG0380015626.01.T01:cds;Parent=MsG0380015626.01.T01 |
Chr3 | CDS | 72676527 | 72676690 | 72676527 | ID=MsG0380015626.01.T01:cds;Parent=MsG0380015626.01.T01 |
Chr3 | CDS | 72676172 | 72676443 | 72676172 | ID=MsG0380015626.01.T01:cds;Parent=MsG0380015626.01.T01 |
Chr3 | CDS | 72675902 | 72676040 | 72675902 | ID=MsG0380015626.01.T01:cds;Parent=MsG0380015626.01.T01 |
Gene Sequence |
Protein sequence |