Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011490.01.T01 | XP_003598002.1 | 97.84 | 324 | 7 | 0 | 2 | 325 | 3 | 326 | 0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011490.01.T01 | A0A0B6VQ48 | 79.245 | 318 | 66 | 0 | 8 | 325 | 5 | 322 | 0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011490.01.T01 | G7IYC1 | 97.840 | 324 | 7 | 0 | 2 | 325 | 3 | 326 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011490.01 | MsG0380011491.01 | 0.913342 | 6.878672e-84 | 1.619333e-79 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180000131.01 | MsG0380011490.01 | PPI |
| MsG0580027412.01 | MsG0380011490.01 | PPI |
| MsG0380011490.01 | MsG0380014890.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011490.01.T01 | MTR_3g005170 | 97.840 | 324 | 7 | 0 | 2 | 325 | 3 | 326 | 0.0 | 654 |
| MsG0380011490.01.T01 | MTR_3g005210 | 90.938 | 320 | 29 | 0 | 6 | 325 | 3 | 322 | 0.0 | 604 |
| MsG0380011490.01.T01 | MTR_3g005170 | 88.272 | 324 | 7 | 1 | 2 | 325 | 3 | 295 | 0.0 | 569 |
| MsG0380011490.01.T01 | MTR_3g005170 | 97.834 | 277 | 6 | 0 | 2 | 278 | 3 | 279 | 0.0 | 561 |
| MsG0380011490.01.T01 | MTR_8g062440 | 71.827 | 323 | 90 | 1 | 3 | 325 | 2 | 323 | 2.15e-175 | 489 |
| MsG0380011490.01.T01 | MTR_8g062110 | 71.077 | 325 | 93 | 1 | 1 | 325 | 1 | 324 | 2.15e-174 | 486 |
| MsG0380011490.01.T01 | MTR_8g062110 | 71.077 | 325 | 93 | 1 | 1 | 325 | 10 | 333 | 2.36e-174 | 486 |
| MsG0380011490.01.T01 | MTR_4g077100 | 68.000 | 325 | 104 | 0 | 1 | 325 | 3 | 327 | 4.93e-174 | 485 |
| MsG0380011490.01.T01 | MTR_8g062440 | 71.605 | 324 | 90 | 2 | 3 | 325 | 2 | 324 | 1.70e-173 | 484 |
| MsG0380011490.01.T01 | MTR_4g077130 | 67.692 | 325 | 105 | 0 | 1 | 325 | 1 | 325 | 1.12e-171 | 479 |
| MsG0380011490.01.T01 | MTR_4g077100 | 68.345 | 278 | 88 | 0 | 1 | 278 | 3 | 280 | 1.07e-147 | 417 |
| MsG0380011490.01.T01 | MTR_8g062110 | 71.223 | 278 | 79 | 1 | 1 | 278 | 1 | 277 | 1.47e-146 | 414 |
| MsG0380011490.01.T01 | MTR_8g062110 | 71.223 | 278 | 79 | 1 | 1 | 278 | 1 | 277 | 1.87e-146 | 414 |
| MsG0380011490.01.T01 | MTR_8g062440 | 66.026 | 312 | 97 | 2 | 3 | 306 | 2 | 312 | 1.06e-145 | 414 |
| MsG0380011490.01.T01 | MTR_8g062110 | 70.742 | 229 | 66 | 1 | 97 | 325 | 11 | 238 | 5.05e-119 | 342 |
| MsG0380011490.01.T01 | MTR_4g006940 | 50.633 | 316 | 147 | 6 | 7 | 320 | 15 | 323 | 1.55e-96 | 289 |
| MsG0380011490.01.T01 | MTR_5g072620 | 47.368 | 323 | 164 | 5 | 5 | 324 | 1 | 320 | 3.71e-94 | 282 |
| MsG0380011490.01.T01 | MTR_8g062110 | 70.879 | 182 | 52 | 1 | 97 | 278 | 11 | 191 | 4.27e-91 | 270 |
| MsG0380011490.01.T01 | MTR_2g104960 | 47.239 | 326 | 163 | 6 | 2 | 325 | 13 | 331 | 1.58e-90 | 274 |
| MsG0380011490.01.T01 | MTR_3g031650 | 42.857 | 322 | 178 | 5 | 5 | 323 | 1 | 319 | 1.82e-86 | 263 |
| MsG0380011490.01.T01 | MTR_2g101330 | 43.671 | 316 | 170 | 6 | 9 | 320 | 5 | 316 | 1.34e-85 | 261 |
| MsG0380011490.01.T01 | MTR_5g056600 | 40.881 | 318 | 181 | 6 | 10 | 323 | 5 | 319 | 1.87e-83 | 255 |
| MsG0380011490.01.T01 | MTR_4g006940 | 51.292 | 271 | 124 | 5 | 9 | 278 | 17 | 280 | 2.84e-82 | 251 |
| MsG0380011490.01.T01 | MTR_4g006940 | 51.292 | 271 | 124 | 5 | 9 | 278 | 17 | 280 | 2.84e-82 | 251 |
| MsG0380011490.01.T01 | MTR_1g022440 | 40.123 | 324 | 185 | 5 | 3 | 320 | 2 | 322 | 8.22e-82 | 251 |
| MsG0380011490.01.T01 | MTR_4g009040 | 42.994 | 314 | 169 | 7 | 9 | 319 | 13 | 319 | 9.84e-79 | 243 |
| MsG0380011490.01.T01 | MTR_3g031650 | 44.815 | 270 | 143 | 5 | 5 | 271 | 1 | 267 | 7.00e-78 | 239 |
| MsG0380011490.01.T01 | MTR_1g022445 | 38.739 | 333 | 187 | 7 | 3 | 323 | 2 | 329 | 1.53e-77 | 240 |
| MsG0380011490.01.T01 | MTR_4g009040 | 42.767 | 318 | 168 | 8 | 9 | 319 | 13 | 323 | 6.23e-77 | 239 |
| MsG0380011490.01.T01 | MTR_0685s0030 | 64.024 | 164 | 59 | 0 | 162 | 325 | 1 | 164 | 1.72e-76 | 232 |
| MsG0380011490.01.T01 | MTR_4g009690 | 43.131 | 313 | 169 | 6 | 9 | 319 | 13 | 318 | 1.01e-71 | 225 |
| MsG0380011490.01.T01 | MTR_2g028620 | 40.483 | 331 | 183 | 9 | 2 | 324 | 3 | 327 | 1.08e-70 | 223 |
| MsG0380011490.01.T01 | MTR_4g009690 | 42.994 | 314 | 169 | 7 | 9 | 319 | 13 | 319 | 3.58e-70 | 221 |
| MsG0380011490.01.T01 | MTR_2g028620 | 43.682 | 277 | 142 | 9 | 2 | 270 | 3 | 273 | 1.21e-62 | 202 |
| MsG0380011490.01.T01 | MTR_4g092080 | 37.654 | 324 | 186 | 7 | 10 | 320 | 15 | 335 | 1.71e-62 | 202 |
| MsG0380011490.01.T01 | MTR_7g074820 | 35.890 | 326 | 194 | 7 | 9 | 323 | 8 | 329 | 1.89e-59 | 194 |
| MsG0380011490.01.T01 | MTR_4g081440 | 37.576 | 330 | 171 | 10 | 10 | 314 | 21 | 340 | 3.38e-59 | 194 |
| MsG0380011490.01.T01 | MTR_4g081440 | 38.182 | 330 | 170 | 11 | 10 | 314 | 25 | 345 | 4.62e-59 | 194 |
| MsG0380011490.01.T01 | MTR_7g074880 | 34.251 | 327 | 195 | 8 | 9 | 323 | 8 | 326 | 4.00e-58 | 190 |
| MsG0380011490.01.T01 | MTR_3g011130 | 80.172 | 116 | 22 | 1 | 100 | 214 | 30 | 145 | 7.70e-57 | 181 |
| MsG0380011490.01.T01 | MTR_7g074850 | 34.557 | 327 | 197 | 8 | 9 | 323 | 8 | 329 | 3.25e-56 | 185 |
| MsG0380011490.01.T01 | MTR_7g074730 | 34.154 | 325 | 200 | 7 | 9 | 323 | 8 | 328 | 1.95e-55 | 183 |
| MsG0380011490.01.T01 | MTR_7g074710 | 37.132 | 272 | 163 | 5 | 9 | 275 | 8 | 276 | 1.04e-52 | 176 |
| MsG0380011490.01.T01 | MTR_0685s0030 | 63.248 | 117 | 43 | 0 | 162 | 278 | 1 | 117 | 2.21e-50 | 163 |
| MsG0380011490.01.T01 | MTR_4g077150 | 48.023 | 177 | 40 | 4 | 99 | 275 | 21 | 145 | 1.93e-46 | 155 |
| MsG0380011490.01.T01 | MTR_4g023730 | 34.752 | 282 | 168 | 7 | 4 | 275 | 3 | 278 | 6.70e-45 | 156 |
| MsG0380011490.01.T01 | MTR_0164s0070 | 52.381 | 126 | 59 | 1 | 9 | 133 | 5 | 130 | 5.19e-39 | 137 |
| MsG0380011490.01.T01 | MTR_7g074870 | 31.010 | 287 | 187 | 7 | 44 | 323 | 6 | 288 | 1.74e-38 | 138 |
| MsG0380011490.01.T01 | MTR_1g099230 | 95.161 | 62 | 3 | 0 | 100 | 161 | 36 | 97 | 1.04e-34 | 125 |
| MsG0380011490.01.T01 | MTR_6g406250 | 29.022 | 317 | 195 | 11 | 8 | 309 | 54 | 355 | 2.88e-33 | 126 |
| MsG0380011490.01.T01 | MTR_2g013250 | 31.741 | 293 | 173 | 6 | 9 | 278 | 7 | 295 | 5.71e-33 | 125 |
| MsG0380011490.01.T01 | MTR_5g029990 | 26.073 | 303 | 202 | 7 | 7 | 303 | 10 | 296 | 7.71e-31 | 118 |
| MsG0380011490.01.T01 | MTR_7g117190 | 31.987 | 297 | 174 | 9 | 9 | 281 | 7 | 299 | 8.83e-31 | 119 |
| MsG0380011490.01.T01 | MTR_7g117190 | 31.410 | 312 | 181 | 10 | 9 | 296 | 7 | 309 | 1.61e-30 | 117 |
| MsG0380011490.01.T01 | MTR_2g013260 | 31.399 | 293 | 174 | 6 | 9 | 278 | 8 | 296 | 1.73e-30 | 117 |
| MsG0380011490.01.T01 | MTR_2g013230 | 30.872 | 298 | 169 | 7 | 9 | 278 | 8 | 296 | 3.16e-30 | 117 |
| MsG0380011490.01.T01 | MTR_2g013260 | 31.399 | 293 | 174 | 6 | 9 | 278 | 8 | 296 | 5.49e-30 | 117 |
| MsG0380011490.01.T01 | MTR_6g406250 | 32.000 | 200 | 118 | 5 | 8 | 197 | 54 | 245 | 7.68e-28 | 109 |
| MsG0380011490.01.T01 | MTR_8g062710 | 46.250 | 80 | 32 | 2 | 9 | 88 | 20 | 88 | 7.09e-14 | 67.8 |
| MsG0380011490.01.T01 | MTR_8g062490 | 51.562 | 64 | 31 | 0 | 216 | 279 | 54 | 117 | 1.23e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011490.01.T01 | AT5G19440 | 75.926 | 324 | 78 | 0 | 2 | 325 | 3 | 326 | 0.0 | 528 |
| MsG0380011490.01.T01 | AT1G51410 | 75.077 | 325 | 81 | 0 | 1 | 325 | 1 | 325 | 0.0 | 527 |
| MsG0380011490.01.T01 | AT1G09510 | 53.145 | 318 | 149 | 0 | 6 | 323 | 5 | 322 | 2.90e-121 | 352 |
| MsG0380011490.01.T01 | AT1G09480 | 53.968 | 315 | 145 | 0 | 6 | 320 | 5 | 319 | 6.87e-121 | 350 |
| MsG0380011490.01.T01 | AT1G09480 | 53.968 | 315 | 145 | 0 | 6 | 320 | 52 | 366 | 1.64e-120 | 351 |
| MsG0380011490.01.T01 | AT1G09490 | 53.651 | 315 | 146 | 0 | 6 | 320 | 5 | 319 | 8.65e-119 | 345 |
| MsG0380011490.01.T01 | AT1G66800 | 53.651 | 315 | 142 | 1 | 6 | 320 | 5 | 315 | 3.92e-113 | 331 |
| MsG0380011490.01.T01 | AT1G09500 | 52.025 | 321 | 151 | 3 | 6 | 323 | 5 | 325 | 4.10e-112 | 328 |
| MsG0380011490.01.T01 | AT1G09500 | 53.650 | 274 | 126 | 1 | 6 | 278 | 5 | 278 | 1.60e-102 | 302 |
| MsG0380011490.01.T01 | AT4G35420 | 46.226 | 318 | 166 | 4 | 9 | 324 | 8 | 322 | 1.32e-95 | 286 |
| MsG0380011490.01.T01 | AT1G09490 | 49.821 | 279 | 140 | 0 | 42 | 320 | 10 | 288 | 7.07e-95 | 283 |
| MsG0380011490.01.T01 | AT1G15950 | 48.137 | 322 | 158 | 6 | 1 | 320 | 5 | 319 | 1.03e-91 | 277 |
| MsG0380011490.01.T01 | AT1G15950 | 48.137 | 322 | 158 | 6 | 1 | 320 | 5 | 319 | 1.03e-91 | 277 |
| MsG0380011490.01.T01 | AT5G58490 | 45.872 | 327 | 171 | 5 | 1 | 324 | 1 | 324 | 5.89e-91 | 275 |
| MsG0380011490.01.T01 | AT1G09500 | 48.432 | 287 | 145 | 3 | 40 | 323 | 5 | 291 | 3.06e-89 | 269 |
| MsG0380011490.01.T01 | AT1G15950 | 47.619 | 315 | 156 | 6 | 1 | 313 | 5 | 312 | 6.19e-88 | 267 |
| MsG0380011490.01.T01 | AT1G80820 | 46.584 | 322 | 163 | 7 | 6 | 325 | 5 | 319 | 5.76e-87 | 265 |
| MsG0380011490.01.T01 | AT1G15950 | 48.746 | 279 | 135 | 5 | 1 | 278 | 5 | 276 | 1.21e-79 | 244 |
| MsG0380011490.01.T01 | AT1G15950 | 48.084 | 287 | 140 | 6 | 1 | 286 | 5 | 283 | 2.54e-79 | 244 |
| MsG0380011490.01.T01 | AT2G02400 | 40.752 | 319 | 179 | 7 | 9 | 323 | 6 | 318 | 4.80e-79 | 244 |
| MsG0380011490.01.T01 | AT1G15950 | 48.736 | 277 | 134 | 5 | 1 | 276 | 5 | 274 | 6.97e-79 | 242 |
| MsG0380011490.01.T01 | AT1G68540 | 41.077 | 297 | 165 | 5 | 11 | 301 | 6 | 298 | 3.89e-76 | 236 |
| MsG0380011490.01.T01 | AT1G80820 | 47.445 | 274 | 136 | 6 | 6 | 278 | 5 | 271 | 2.01e-73 | 228 |
| MsG0380011490.01.T01 | AT2G33590 | 41.379 | 319 | 178 | 6 | 9 | 324 | 9 | 321 | 6.47e-71 | 223 |
| MsG0380011490.01.T01 | AT5G42800 | 38.199 | 322 | 190 | 5 | 8 | 323 | 7 | 325 | 1.25e-68 | 219 |
| MsG0380011490.01.T01 | AT1G76470 | 42.722 | 316 | 170 | 9 | 9 | 318 | 7 | 317 | 5.84e-66 | 211 |
| MsG0380011490.01.T01 | AT2G33600 | 41.250 | 320 | 177 | 7 | 9 | 324 | 9 | 321 | 3.58e-65 | 208 |
| MsG0380011490.01.T01 | AT1G25460 | 37.380 | 313 | 191 | 5 | 11 | 320 | 6 | 316 | 4.03e-64 | 206 |
| MsG0380011490.01.T01 | AT1G61720 | 35.093 | 322 | 191 | 6 | 10 | 319 | 14 | 329 | 1.94e-56 | 186 |
| MsG0380011490.01.T01 | AT4G27250 | 35.347 | 331 | 193 | 9 | 10 | 325 | 14 | 338 | 6.35e-56 | 185 |
| MsG0380011490.01.T01 | AT4G27250 | 35.000 | 340 | 192 | 10 | 10 | 325 | 14 | 348 | 1.74e-55 | 184 |
| MsG0380011490.01.T01 | AT1G15950 | 44.395 | 223 | 120 | 4 | 100 | 320 | 1 | 221 | 1.66e-51 | 171 |
| MsG0380011490.01.T01 | AT2G45400 | 32.680 | 306 | 197 | 3 | 7 | 303 | 38 | 343 | 2.99e-47 | 163 |
| MsG0380011490.01.T01 | AT2G45400 | 33.692 | 279 | 176 | 3 | 7 | 276 | 38 | 316 | 2.88e-46 | 159 |
| MsG0380011490.01.T01 | AT2G23910 | 29.779 | 272 | 180 | 6 | 10 | 278 | 11 | 274 | 1.06e-42 | 149 |
| MsG0380011490.01.T01 | AT2G23910 | 30.000 | 270 | 178 | 6 | 10 | 276 | 11 | 272 | 1.15e-42 | 149 |
| MsG0380011490.01.T01 | AT2G23910 | 30.000 | 270 | 178 | 6 | 10 | 276 | 11 | 272 | 1.83e-42 | 149 |
| MsG0380011490.01.T01 | AT4G30470 | 29.617 | 287 | 190 | 6 | 7 | 290 | 8 | 285 | 2.44e-41 | 146 |
| MsG0380011490.01.T01 | AT2G45400 | 35.484 | 217 | 133 | 2 | 7 | 216 | 38 | 254 | 7.27e-39 | 138 |
| MsG0380011490.01.T01 | AT1G68540 | 36.979 | 192 | 118 | 3 | 112 | 301 | 1 | 191 | 2.14e-38 | 135 |
| MsG0380011490.01.T01 | AT2G23910 | 29.386 | 228 | 150 | 6 | 52 | 276 | 19 | 238 | 5.46e-32 | 120 |
| MsG0380011490.01.T01 | AT2G45400 | 29.259 | 270 | 184 | 2 | 41 | 303 | 17 | 286 | 3.70e-31 | 119 |
| MsG0380011490.01.T01 | AT5G14700 | 27.551 | 294 | 193 | 10 | 1 | 281 | 46 | 332 | 1.14e-29 | 116 |
| MsG0380011490.01.T01 | AT5G14700 | 29.778 | 225 | 144 | 7 | 1 | 216 | 46 | 265 | 1.09e-24 | 101 |
| MsG0380011490.01.T01 | AT4G33360 | 24.138 | 261 | 169 | 8 | 9 | 262 | 15 | 253 | 1.31e-12 | 67.8 |
| MsG0380011490.01.T01 | AT4G33360 | 24.138 | 261 | 169 | 8 | 9 | 262 | 3 | 241 | 1.47e-12 | 67.8 |
| MsG0380011490.01.T01 | AT4G33360 | 24.138 | 261 | 169 | 8 | 9 | 262 | 15 | 253 | 1.70e-12 | 67.8 |
Find 87 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCATCCCAAACTAGAATT+TGG | 0.171474 | 3:+224088 | None:intergenic |
| GTCCTTGACATCATGATAAA+AGG | 0.226291 | 3:+224797 | None:intergenic |
| GACATTTCCAAATTCTAGTT+TGG | 0.253982 | 3:-224095 | MsG0380011490.01.T01:CDS |
| AACCAAGTGGTCAACCTTCT+TGG | 0.257463 | 3:+224932 | None:intergenic |
| AAACTTAAGTATGTGAAATA+AGG | 0.257685 | 3:-222555 | MsG0380011490.01.T01:three_prime_UTR |
| CATTCTCGTACGCCAGAATA+TGG | 0.258064 | 3:+224041 | None:intergenic |
| ATTGCTGCTGTTGCGTATAA+TGG | 0.272149 | 3:-224672 | MsG0380011490.01.T01:CDS |
| GCAATTCTAAACCTGATTAA+TGG | 0.275531 | 3:-224352 | MsG0380011490.01.T01:intron |
| AATTATTAATCTTACTTCTC+TGG | 0.283324 | 3:+223923 | None:intergenic |
| TCTTTGGAAACCTGATATAT+AGG | 0.308566 | 3:+222731 | None:intergenic |
| TAAAGAAAACAACATTGATA+TGG | 0.308617 | 3:-224440 | MsG0380011490.01.T01:CDS |
| CTTCAGGTTACATCGCTTCA+TGG | 0.319947 | 3:-225295 | MsG0380011490.01.T01:CDS |
| TTGCAGCAGCACTTGTGTTT+AGG | 0.321177 | 3:+224371 | None:intergenic |
| GCCTTTGATTCTGTTGTTCA+AGG | 0.322181 | 3:-224849 | MsG0380011490.01.T01:CDS |
| CTGAAATAAGTCATTCTTCA+TGG | 0.322867 | 3:-222502 | MsG0380011490.01.T01:three_prime_UTR |
| TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3:-224053 | MsG0380011490.01.T01:CDS |
| GTAATTAATTACCATTAATC+AGG | 0.328588 | 3:+224341 | None:intergenic |
| AACATGGAGACACAAATTAA+AGG | 0.354649 | 3:+222618 | None:intergenic |
| AGTTAAGGTAATCTGTGTTT+TGG | 0.355154 | 3:-222447 | MsG0380011490.01.T01:three_prime_UTR |
| ATTAACCCAGCAATGGTCAT+AGG | 0.359026 | 3:-224412 | MsG0380011490.01.T01:CDS |
| GTATGTGTGACTGGCGCTTC+AGG | 0.374333 | 3:-225311 | MsG0380011490.01.T01:CDS |
| ATAAGTCATTCTTCATGGTT+TGG | 0.375009 | 3:-222497 | MsG0380011490.01.T01:three_prime_UTR |
| GTGTCTCCATGTTTAGTTGA+TGG | 0.383916 | 3:-222608 | MsG0380011490.01.T01:three_prime_UTR |
| ACCAAGTGGTCAACCTTCTT+GGG | 0.387248 | 3:+224933 | None:intergenic |
| GGTTTGGTTTGTACTCTTGA+TGG | 0.388763 | 3:-222481 | MsG0380011490.01.T01:three_prime_UTR |
| ACATTTCCAAATTCTAGTTT+GGG | 0.393375 | 3:-224094 | MsG0380011490.01.T01:CDS |
| AGAGGCCCTATGACCATTGC+TGG | 0.404733 | 3:+224406 | None:intergenic |
| GGTTTAAATTAAATCTAGAT+TGG | 0.409983 | 3:-222534 | MsG0380011490.01.T01:three_prime_UTR |
| ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3:+223924 | None:intergenic |
| GGAGAGATTGCAACTGTTCA+AGG | 0.418796 | 3:-224892 | MsG0380011490.01.T01:CDS |
| GCCGTATGTGCCTATATATC+AGG | 0.426554 | 3:-222741 | MsG0380011490.01.T01:CDS |
| GGGACTTGAGTATACTCCTT+TGG | 0.434471 | 3:-222693 | MsG0380011490.01.T01:CDS |
| GACCACTTGGTTAAGCTTGA+AGG | 0.439383 | 3:-224921 | MsG0380011490.01.T01:CDS |
| CAAAGAAAAGGCGAAAAGCT+TGG | 0.447824 | 3:-222714 | MsG0380011490.01.T01:CDS |
| TCCCAAGAAGGTTGACCACT+TGG | 0.453559 | 3:-224934 | MsG0380011490.01.T01:CDS |
| GAGAAAATGAGCAGCAACTT+GGG | 0.454229 | 3:-225341 | MsG0380011490.01.T01:exon |
| AGACAAGACGTTTGAGTGAT+GGG | 0.455678 | 3:+224706 | None:intergenic |
| AAAGAAAAGGCGAAAAGCTT+GGG | 0.461360 | 3:-222713 | MsG0380011490.01.T01:CDS |
| AGAGAAAATGAGCAGCAACT+TGG | 0.464708 | 3:-225342 | MsG0380011490.01.T01:exon |
| CCATGTTTAGTTGATGGACA+TGG | 0.467956 | 3:-222602 | MsG0380011490.01.T01:three_prime_UTR |
| TCCAAATTCTAGTTTGGGAT+GGG | 0.474083 | 3:-224089 | MsG0380011490.01.T01:CDS |
| ATGGAACAGTGAATGAGTTA+AGG | 0.477738 | 3:-222462 | MsG0380011490.01.T01:three_prime_UTR |
| TTCCAAATTCTAGTTTGGGA+TGG | 0.486809 | 3:-224090 | MsG0380011490.01.T01:CDS |
| ATATCAGGTTTCCAAAGAAA+AGG | 0.488979 | 3:-222726 | MsG0380011490.01.T01:CDS |
| TTGAGAGTCCCTTTGAGAGC+AGG | 0.491416 | 3:+224753 | None:intergenic |
| ATTGTTTCAGCTGTGGTATG+TGG | 0.496971 | 3:-224503 | MsG0380011490.01.T01:intron |
| ATTCTCGTACGCCAGAATAT+GGG | 0.502026 | 3:+224042 | None:intergenic |
| TCCTTGACATCATGATAAAA+GGG | 0.502735 | 3:+224798 | None:intergenic |
| TTGATTGATCCTGCTCTCAA+AGG | 0.509724 | 3:-224762 | MsG0380011490.01.T01:CDS |
| GTCTCATCGACAACAACATC+AGG | 0.511018 | 3:+224636 | None:intergenic |
| TTTAGGACTGGTTGCAAGAG+AGG | 0.512693 | 3:+224388 | None:intergenic |
| ACCTGATATATAGGCACATA+CGG | 0.513032 | 3:+222740 | None:intergenic |
| TGATTGATCCTGCTCTCAAA+GGG | 0.514573 | 3:-224761 | MsG0380011490.01.T01:CDS |
| ATTAAATCTAGATTGGTACT+AGG | 0.515463 | 3:-222527 | MsG0380011490.01.T01:three_prime_UTR |
| GCAGCACTTGTGTTTAGGAC+TGG | 0.518349 | 3:+224376 | None:intergenic |
| AAGACAAGACGTTTGAGTGA+TGG | 0.518377 | 3:+224705 | None:intergenic |
| TACGAGAATGCTTCAGCTAG+TGG | 0.527796 | 3:-224028 | MsG0380011490.01.T01:CDS |
| GTCCGATTGCTTCTTAATCG+TGG | 0.529226 | 3:-225269 | MsG0380011490.01.T01:CDS |
| TCATGATGTCAAGGACCCTC+AGG | 0.532225 | 3:-224790 | MsG0380011490.01.T01:CDS |
| GGTTAAGCTTGAAGGTGCTA+AGG | 0.535332 | 3:-224913 | MsG0380011490.01.T01:CDS |
| CCATGTCCATCAACTAAACA+TGG | 0.541535 | 3:+222602 | None:intergenic |
| TCCTTGATGCTCACTTCCAA+AGG | 0.541588 | 3:+222677 | None:intergenic |
| TTAACCCAGCAATGGTCATA+GGG | 0.542832 | 3:-224411 | MsG0380011490.01.T01:CDS |
| TCTGTTGTTCAAGGCTGTCA+TGG | 0.548150 | 3:-224840 | MsG0380011490.01.T01:CDS |
| CAAGGCAAATCTACTTGAAG+AGG | 0.550142 | 3:-224874 | MsG0380011490.01.T01:CDS |
| GGAAATGTTGTATGTGTGAC+TGG | 0.550828 | 3:-225320 | MsG0380011490.01.T01:CDS |
| GACAAGACGTTTGAGTGATG+GGG | 0.560252 | 3:+224707 | None:intergenic |
| GCCTTGAACAACAGAATCAA+AGG | 0.567407 | 3:+224848 | None:intergenic |
| ATGTTGTTGTCGATGAGACT+TGG | 0.571264 | 3:-224632 | MsG0380011490.01.T01:CDS |
| CATTGGCTGAAGAAGCTGCA+TGG | 0.580278 | 3:-224471 | MsG0380011490.01.T01:CDS |
| TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3:+223938 | None:intergenic |
| GTATGTGGTTTCAAAGACAT+TGG | 0.606075 | 3:-224488 | MsG0380011490.01.T01:CDS |
| ACAACAACATCAGGAGTTCG+AGG | 0.607925 | 3:+224645 | None:intergenic |
| CACCTTCAAGCTTAACCAAG+TGG | 0.608434 | 3:+224919 | None:intergenic |
| GCCTGTAGATGATCCCAAGA+AGG | 0.612585 | 3:-224946 | MsG0380011490.01.T01:intron |
| AGCCACGATTAAGAAGCAAT+CGG | 0.615772 | 3:+225267 | None:intergenic |
| TCCTTTGGAAGTGAGCATCA+AGG | 0.622590 | 3:-222678 | MsG0380011490.01.T01:CDS |
| CACACTACTCAGAAGTTGTG+AGG | 0.628161 | 3:-223979 | MsG0380011490.01.T01:CDS |
| GAGGCCCTATGACCATTGCT+GGG | 0.631385 | 3:+224407 | None:intergenic |
| CATACTTGGATCGCGAACGG+TGG | 0.631858 | 3:+225232 | None:intergenic |
| GGATCAATCAATTCAGCCTG+AGG | 0.632382 | 3:+224774 | None:intergenic |
| AAACATACTTGGATCGCGAA+CGG | 0.632556 | 3:+225229 | None:intergenic |
| GGTTACTATTAACCCAGCAA+TGG | 0.635018 | 3:-224419 | MsG0380011490.01.T01:CDS |
| TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3:+223939 | None:intergenic |
| AAGGCAAATCTACTTGAAGA+GGG | 0.656212 | 3:-224873 | MsG0380011490.01.T01:CDS |
| AACTATGTTTACCAGATGTG+CGG | 0.691679 | 3:-222771 | MsG0380011490.01.T01:intron |
| GATCAATCAATTCAGCCTGA+GGG | 0.692249 | 3:+224775 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATGTAAATACAGAAA+CGG | + | Chr3:224956-224975 | None:intergenic | 15.0% |
| !!! | ATTAAGTGTTTCTAAAAATA+CGG | - | Chr3:224829-224848 | MsG0380011490.01.T01:CDS | 15.0% |
| !! | AAACTTAAGTATGTGAAATA+AGG | - | Chr3:225255-225274 | MsG0380011490.01.T01:CDS | 20.0% |
| !! | AATAGAATCTCTCAAAATAA+GGG | - | Chr3:224185-224204 | MsG0380011490.01.T01:intron | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | + | Chr3:223890-223909 | None:intergenic | 20.0% |
| !! | ACTATCATATAGTTAAAGTA+TGG | - | Chr3:224388-224407 | MsG0380011490.01.T01:CDS | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | + | Chr3:223889-223908 | None:intergenic | 20.0% |
| !! | CAATTTAATGCTAAAATGAA+AGG | - | Chr3:224011-224030 | MsG0380011490.01.T01:CDS | 20.0% |
| !! | CTATCATATAGTTAAAGTAT+GGG | - | Chr3:224389-224408 | MsG0380011490.01.T01:CDS | 20.0% |
| !! | GGTTTAAATTAAATCTAGAT+TGG | - | Chr3:225276-225295 | MsG0380011490.01.T01:CDS | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | + | Chr3:223472-223491 | None:intergenic | 20.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | - | Chr3:223370-223389 | MsG0380011490.01.T01:intron | 20.0% |
| !! | TTTACATAACAAGATTGTAA+AGG | - | Chr3:224153-224172 | MsG0380011490.01.T01:intron | 20.0% |
| !!! | AAATAAAGCTTTAAAGAATG+TGG | + | Chr3:223977-223996 | None:intergenic | 20.0% |
| !!! | GTTAAAAAGTACAGAAATAA+TGG | + | Chr3:224596-224615 | None:intergenic | 20.0% |
| !!! | TGTACTGAATTTTTCATTTT+GGG | - | Chr3:224794-224813 | MsG0380011490.01.T01:CDS | 20.0% |
| !!! | TTGTACTGAATTTTTCATTT+TGG | - | Chr3:224793-224812 | MsG0380011490.01.T01:CDS | 20.0% |
| ! | ACCAATAATAATTTCAATCC+GGG | + | Chr3:222749-222768 | None:intergenic | 25.0% |
| ! | ATAACACCTTCTATCATATT+GGG | - | Chr3:224690-224709 | MsG0380011490.01.T01:CDS | 25.0% |
| ! | ATTAAATCTAGATTGGTACT+AGG | - | Chr3:225283-225302 | MsG0380011490.01.T01:CDS | 25.0% |
| ! | ATTGAAATTATTATTGGTGG+TGG | - | Chr3:222751-222770 | MsG0380011490.01.T01:CDS | 25.0% |
| ! | CAATAGAATCTCTCAAAATA+AGG | - | Chr3:224184-224203 | MsG0380011490.01.T01:intron | 25.0% |
| ! | CACCAATAATAATTTCAATC+CGG | + | Chr3:222750-222769 | None:intergenic | 25.0% |
| ! | GAAAAAGACATAAACATACT+TGG | + | Chr3:222595-222614 | None:intergenic | 25.0% |
| ! | GAGTATAAAACAACATTTCT+AGG | + | Chr3:224876-224895 | None:intergenic | 25.0% |
| ! | TATAACACCTTCTATCATAT+TGG | - | Chr3:224689-224708 | MsG0380011490.01.T01:CDS | 25.0% |
| ! | TCTTTAATGTATACGGAAAA+AGG | - | Chr3:224069-224088 | MsG0380011490.01.T01:CDS | 25.0% |
| !! | AATAAGGGAAAGTACATTAA+TGG | - | Chr3:224200-224219 | MsG0380011490.01.T01:intron | 25.0% |
| !! | GTTTTATACTCGAAAATCAT+AGG | - | Chr3:224885-224904 | MsG0380011490.01.T01:CDS | 25.0% |
| !!! | ACATTTCCAAATTCTAGTTT+GGG | - | Chr3:223716-223735 | MsG0380011490.01.T01:intron | 25.0% |
| !!! | GGTTGTTTCTTTAATGTATA+CGG | - | Chr3:224062-224081 | MsG0380011490.01.T01:CDS | 25.0% |
| !!! | TTAAGTTTTTTCACAAGCAT+AGG | + | Chr3:225243-225262 | None:intergenic | 25.0% |
| AACATGAGCTATAAATCGAA+AGG | + | Chr3:224548-224567 | None:intergenic | 30.0% | |
| AACATGGAGACACAAATTAA+AGG | + | Chr3:225195-225214 | None:intergenic | 30.0% | |
| AAGTTACCCAATATGATAGA+AGG | + | Chr3:224699-224718 | None:intergenic | 30.0% | |
| ACAGAATGATGAATCATGTA+GGG | + | Chr3:224933-224952 | None:intergenic | 30.0% | |
| ACCCGGATTGAAATTATTAT+TGG | - | Chr3:222745-222764 | MsG0380011490.01.T01:CDS | 30.0% | |
| ACTCGAAAATCATAGGTTAA+TGG | - | Chr3:224892-224911 | MsG0380011490.01.T01:CDS | 30.0% | |
| AGCTTCTATTATCTACAGAA+GGG | + | Chr3:223668-223687 | None:intergenic | 30.0% | |
| ATAAGTCATTCTTCATGGTT+TGG | - | Chr3:225313-225332 | MsG0380011490.01.T01:CDS | 30.0% | |
| ATAGAGAACATATCAACTAG+GGG | + | Chr3:224365-224384 | None:intergenic | 30.0% | |
| ATATCAGGTTTCCAAAGAAA+AGG | - | Chr3:225084-225103 | MsG0380011490.01.T01:intron | 30.0% | |
| ATTGATTATACAGACCAAGT+TGG | + | Chr3:224298-224317 | None:intergenic | 30.0% | |
| CAAATATGTTTGTGTTCAAG+AGG | - | Chr3:223631-223650 | MsG0380011490.01.T01:intron | 30.0% | |
| CGGATTGAAATTATTATTGG+TGG | - | Chr3:222748-222767 | MsG0380011490.01.T01:CDS | 30.0% | |
| CTGAAATAAGTCATTCTTCA+TGG | - | Chr3:225308-225327 | MsG0380011490.01.T01:CDS | 30.0% | |
| GATAGAGAACATATCAACTA+GGG | + | Chr3:224366-224385 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | - | Chr3:223458-223477 | MsG0380011490.01.T01:intron | 30.0% | |
| TAACTATAATCACCTTCTAG+CGG | - | Chr3:224251-224270 | MsG0380011490.01.T01:intron | 30.0% | |
| TACAGAAGACACAAAAATAG+AGG | + | Chr3:224746-224765 | None:intergenic | 30.0% | |
| TATATTCTATGCATCCAACT+TGG | - | Chr3:224281-224300 | MsG0380011490.01.T01:intron | 30.0% | |
| TCCTTGACATCATGATAAAA+GGG | + | Chr3:223015-223034 | None:intergenic | 30.0% | |
| TGATAGAGAACATATCAACT+AGG | + | Chr3:224367-224386 | None:intergenic | 30.0% | |
| ! | AATATGTATGTGTCCTGTTT+TGG | - | Chr3:222775-222794 | MsG0380011490.01.T01:intron | 30.0% |
| ! | AGTTAAGGTAATCTGTGTTT+TGG | - | Chr3:225363-225382 | MsG0380011490.01.T01:five_prime_UTR | 30.0% |
| ! | CAATCTTGTTATGTAAAGCA+AGG | + | Chr3:224150-224169 | None:intergenic | 30.0% |
| ! | CATTGCTAATAGTTGATTCA+GGG | - | Chr3:224041-224060 | MsG0380011490.01.T01:CDS | 30.0% |
| ! | GACATTTCCAAATTCTAGTT+TGG | - | Chr3:223715-223734 | MsG0380011490.01.T01:intron | 30.0% |
| ! | TCATTGCTAATAGTTGATTC+AGG | - | Chr3:224040-224059 | MsG0380011490.01.T01:CDS | 30.0% |
| ! | TCTTTGGAAACCTGATATAT+AGG | + | Chr3:225082-225101 | None:intergenic | 30.0% |
| !! | AAAACAACATTTCTAGGACT+TGG | + | Chr3:224870-224889 | None:intergenic | 30.0% |
| !!! | AATTCAAAAGCGTTTTTGAG+AGG | + | Chr3:223248-223267 | None:intergenic | 30.0% |
| AAAGAAAAGGCGAAAAGCTT+GGG | - | Chr3:225097-225116 | MsG0380011490.01.T01:intron | 35.0% | |
| AACTATAATCACCTTCTAGC+GGG | - | Chr3:224252-224271 | MsG0380011490.01.T01:intron | 35.0% | |
| AACTATGTTTACCAGATGTG+CGG | - | Chr3:225039-225058 | MsG0380011490.01.T01:intron | 35.0% | |
| AAGCAACAATGAAGCAATTG+GGG | + | Chr3:223574-223593 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAAGA+GGG | - | Chr3:222937-222956 | MsG0380011490.01.T01:intron | 35.0% | |
| ACAAGCAACAATGAAGCAAT+TGG | + | Chr3:223576-223595 | None:intergenic | 35.0% | |
| ACCTGATATATAGGCACATA+CGG | + | Chr3:225073-225092 | None:intergenic | 35.0% | |
| ATGGAACAGTGAATGAGTTA+AGG | - | Chr3:225348-225367 | MsG0380011490.01.T01:exon | 35.0% | |
| CAAGCAACAATGAAGCAATT+GGG | + | Chr3:223575-223594 | None:intergenic | 35.0% | |
| CACATCTATGTGGATGAATT+GGG | - | Chr3:224477-224496 | MsG0380011490.01.T01:CDS | 35.0% | |
| GAAGACACAAAAATAGAGGA+AGG | + | Chr3:224742-224761 | None:intergenic | 35.0% | |
| GACAGAATGATGAATCATGT+AGG | + | Chr3:224934-224953 | None:intergenic | 35.0% | |
| GAGCTTCTATTATCTACAGA+AGG | + | Chr3:223669-223688 | None:intergenic | 35.0% | |
| GTATGTGGTTTCAAAGACAT+TGG | - | Chr3:223322-223341 | MsG0380011490.01.T01:intron | 35.0% | |
| GTCCTTGACATCATGATAAA+AGG | + | Chr3:223016-223035 | None:intergenic | 35.0% | |
| TTTAACACATATTCAGCCTC+TGG | - | Chr3:224610-224629 | MsG0380011490.01.T01:CDS | 35.0% | |
| ! | TCCCTTTTATCATGATGTCA+AGG | - | Chr3:223011-223030 | MsG0380011490.01.T01:intron | 35.0% |
| !! | TCCAAATTCTAGTTTGGGAT+GGG | - | Chr3:223721-223740 | MsG0380011490.01.T01:intron | 35.0% |
| !! | TTCCAAATTCTAGTTTGGGA+TGG | - | Chr3:223720-223739 | MsG0380011490.01.T01:intron | 35.0% |
| AAACATACTTGGATCGCGAA+CGG | + | Chr3:222584-222603 | None:intergenic | 40.0% | |
| AAACCATGTGTTACGTACTG+GGG | + | Chr3:224637-224656 | None:intergenic | 40.0% | |
| AAGACAAGACGTTTGAGTGA+TGG | + | Chr3:223108-223127 | None:intergenic | 40.0% | |
| ACAAACACCAACACCAAAAC+AGG | + | Chr3:222791-222810 | None:intergenic | 40.0% | |
| ACCCATCCCAAACTAGAATT+TGG | + | Chr3:223725-223744 | None:intergenic | 40.0% | |
| AGACAAGACGTTTGAGTGAT+GGG | + | Chr3:223107-223126 | None:intergenic | 40.0% | |
| AGAGAAAATGAGCAGCAACT+TGG | - | Chr3:222468-222487 | MsG0380011490.01.T01:three_prime_UTR | 40.0% | |
| AGCAACAATGAAGCAATTGG+GGG | + | Chr3:223573-223592 | None:intergenic | 40.0% | |
| AGCCACGATTAAGAAGCAAT+CGG | + | Chr3:222546-222565 | None:intergenic | 40.0% | |
| ATAATTTCAATCCGGGTGTC+TGG | + | Chr3:222742-222761 | None:intergenic | 40.0% | |
| ATATATATGCTCCCGCTAGA+AGG | + | Chr3:224266-224285 | None:intergenic | 40.0% | |
| ATCTATGTGGATGAATTGGG+AGG | - | Chr3:224480-224499 | MsG0380011490.01.T01:CDS | 40.0% | |
| ATGTTGTTGTCGATGAGACT+TGG | - | Chr3:223178-223197 | MsG0380011490.01.T01:intron | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | - | Chr3:223398-223417 | MsG0380011490.01.T01:intron | 40.0% | |
| ATTCTCGTACGCCAGAATAT+GGG | + | Chr3:223771-223790 | None:intergenic | 40.0% | |
| ATTGCTGCTGTTGCGTATAA+TGG | - | Chr3:223138-223157 | MsG0380011490.01.T01:intron | 40.0% | |
| ATTGTTTCAGCTGTGGTATG+TGG | - | Chr3:223307-223326 | MsG0380011490.01.T01:intron | 40.0% | |
| CAAAGAAAAGGCGAAAAGCT+TGG | - | Chr3:225096-225115 | MsG0380011490.01.T01:intron | 40.0% | |
| CAAGGCAAATCTACTTGAAG+AGG | - | Chr3:222936-222955 | MsG0380011490.01.T01:intron | 40.0% | |
| CCACAGCTGAAACAATCAAT+AGG | + | Chr3:223303-223322 | None:intergenic | 40.0% | |
| CCATGTCCATCAACTAAACA+TGG | + | Chr3:225211-225230 | None:intergenic | 40.0% | |
| CTCTTTCACTTCATTGATGC+AGG | - | Chr3:223686-223705 | MsG0380011490.01.T01:intron | 40.0% | |
| GAAACCATGTGTTACGTACT+GGG | + | Chr3:224638-224657 | None:intergenic | 40.0% | |
| GAGAAAATGAGCAGCAACTT+GGG | - | Chr3:222469-222488 | MsG0380011490.01.T01:three_prime_UTR | 40.0% | |
| GATCAATCAATTCAGCCTGA+GGG | + | Chr3:223038-223057 | None:intergenic | 40.0% | |
| GCACATCTATGTGGATGAAT+TGG | - | Chr3:224476-224495 | MsG0380011490.01.T01:CDS | 40.0% | |
| GCCTTGAACAACAGAATCAA+AGG | + | Chr3:222965-222984 | None:intergenic | 40.0% | |
| GCCTTTGATTCTGTTGTTCA+AGG | - | Chr3:222961-222980 | MsG0380011490.01.T01:intron | 40.0% | |
| GGAAATGTTGTATGTGTGAC+TGG | - | Chr3:222490-222509 | MsG0380011490.01.T01:three_prime_UTR | 40.0% | |
| GGACTTGGCACATTTATACT+TGG | + | Chr3:224855-224874 | None:intergenic | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | - | Chr3:223391-223410 | MsG0380011490.01.T01:intron | 40.0% | |
| GTGTCTCCATGTTTAGTTGA+TGG | - | Chr3:225202-225221 | MsG0380011490.01.T01:intron | 40.0% | |
| TCAATTCGTCCACAAACACT+TGG | + | Chr3:224417-224436 | None:intergenic | 40.0% | |
| TGAAACCATGTGTTACGTAC+TGG | + | Chr3:224639-224658 | None:intergenic | 40.0% | |
| TGATTGATCCTGCTCTCAAA+GGG | - | Chr3:223049-223068 | MsG0380011490.01.T01:intron | 40.0% | |
| TGCATTCACCAAACCTCTAT+GGG | + | Chr3:224329-224348 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | - | Chr3:223757-223776 | MsG0380011490.01.T01:intron | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | - | Chr3:223399-223418 | MsG0380011490.01.T01:intron | 40.0% | |
| TTGATTGATCCTGCTCTCAA+AGG | - | Chr3:223048-223067 | MsG0380011490.01.T01:intron | 40.0% | |
| TTGCATTCACCAAACCTCTA+TGG | + | Chr3:224330-224349 | None:intergenic | 40.0% | |
| ! | CAAGCTTTTCGCCTTTTCTT+TGG | + | Chr3:225098-225117 | None:intergenic | 40.0% |
| ! | CCTATTGATTGTTTCAGCTG+TGG | - | Chr3:223300-223319 | MsG0380011490.01.T01:intron | 40.0% |
| !! | CCATGTTTAGTTGATGGACA+TGG | - | Chr3:225208-225227 | MsG0380011490.01.T01:intron | 40.0% |
| !! | GGTTTGGTTTGTACTCTTGA+TGG | - | Chr3:225329-225348 | MsG0380011490.01.T01:CDS | 40.0% |
| !!! | TATGTGTCCTGTTTTGGTGT+TGG | - | Chr3:222781-222800 | MsG0380011490.01.T01:intron | 40.0% |
| AACCAAGTGGTCAACCTTCT+TGG | + | Chr3:222881-222900 | None:intergenic | 45.0% | |
| ACAACAACATCAGGAGTTCG+AGG | + | Chr3:223168-223187 | None:intergenic | 45.0% | |
| ACCAAGTGGTCAACCTTCTT+GGG | + | Chr3:222880-222899 | None:intergenic | 45.0% | |
| ACCTTCTTGGGATCATCTAC+AGG | + | Chr3:222868-222887 | None:intergenic | 45.0% | |
| CAATGAAGCAATTGGGGGAA+AGG | + | Chr3:223568-223587 | None:intergenic | 45.0% | |
| CACACTACTCAGAAGTTGTG+AGG | - | Chr3:223831-223850 | MsG0380011490.01.T01:intron | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | + | Chr3:222894-222913 | None:intergenic | 45.0% | |
| CATTCTCGTACGCCAGAATA+TGG | + | Chr3:223772-223791 | None:intergenic | 45.0% | |
| CGTAACACATGGTTTCACTG+AGG | - | Chr3:224642-224661 | MsG0380011490.01.T01:CDS | 45.0% | |
| GACAAGACGTTTGAGTGATG+GGG | + | Chr3:223106-223125 | None:intergenic | 45.0% | |
| GACCACTTGGTTAAGCTTGA+AGG | - | Chr3:222889-222908 | MsG0380011490.01.T01:intron | 45.0% | |
| GCATTCACCAAACCTCTATG+GGG | + | Chr3:224328-224347 | None:intergenic | 45.0% | |
| GCCGTATGTGCCTATATATC+AGG | - | Chr3:225069-225088 | MsG0380011490.01.T01:intron | 45.0% | |
| GGAGAGATTGCAACTGTTCA+AGG | - | Chr3:222918-222937 | MsG0380011490.01.T01:intron | 45.0% | |
| GGATCAATCAATTCAGCCTG+AGG | + | Chr3:223039-223058 | None:intergenic | 45.0% | |
| GGGACTTGAGTATACTCCTT+TGG | - | Chr3:225117-225136 | MsG0380011490.01.T01:intron | 45.0% | |
| GTATGGGTACCAAGTGTTTG+TGG | - | Chr3:224405-224424 | MsG0380011490.01.T01:CDS | 45.0% | |
| GTCCGATTGCTTCTTAATCG+TGG | - | Chr3:222541-222560 | MsG0380011490.01.T01:three_prime_UTR | 45.0% | |
| GTCTCATCGACAACAACATC+AGG | + | Chr3:223177-223196 | None:intergenic | 45.0% | |
| TACCATACGAAGCACAGACA+CGG | + | Chr3:222816-222835 | None:intergenic | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | - | Chr3:223782-223801 | MsG0380011490.01.T01:intron | 45.0% | |
| TCAATCTGACATCCCCATAG+AGG | - | Chr3:224313-224332 | MsG0380011490.01.T01:intron | 45.0% | |
| TCCTTGATGCTCACTTCCAA+AGG | + | Chr3:225136-225155 | None:intergenic | 45.0% | |
| TCGAAAGGTGATCAAGTCTG+AGG | + | Chr3:224533-224552 | None:intergenic | 45.0% | |
| TCTGTTGTTCAAGGCTGTCA+TGG | - | Chr3:222970-222989 | MsG0380011490.01.T01:intron | 45.0% | |
| TGTGACTGAGCACATCTATG+TGG | - | Chr3:224467-224486 | MsG0380011490.01.T01:CDS | 45.0% | |
| TTGCAGCAGCACTTGTGTTT+AGG | + | Chr3:223442-223461 | None:intergenic | 45.0% | |
| ! | CTTCAGGTTACATCGCTTCA+TGG | - | Chr3:222515-222534 | MsG0380011490.01.T01:three_prime_UTR | 45.0% |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | - | Chr3:225132-225151 | MsG0380011490.01.T01:intron | 45.0% |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | - | Chr3:222897-222916 | MsG0380011490.01.T01:intron | 45.0% |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | + | Chr3:223425-223444 | None:intergenic | 45.0% |
| !! | AAATAATAATTATTATTGAT+TGG | + | Chr3:222669-222688 | None:intergenic | 5.0% |
| CTGACATCCCCATAGAGGTT+TGG | - | Chr3:224318-224337 | MsG0380011490.01.T01:intron | 50.0% | |
| GCCTGTAGATGATCCCAAGA+AGG | - | Chr3:222864-222883 | MsG0380011490.01.T01:intron | 50.0% | |
| GGTGATCAAGTCTGAGGAAC+AGG | + | Chr3:224527-224546 | None:intergenic | 50.0% | |
| TCATGATGTCAAGGACCCTC+AGG | - | Chr3:223020-223039 | MsG0380011490.01.T01:intron | 50.0% | |
| TCCCAAGAAGGTTGACCACT+TGG | - | Chr3:222876-222895 | MsG0380011490.01.T01:intron | 50.0% | |
| TGAATGAGACACCAGACACC+CGG | - | Chr3:222728-222747 | MsG0380011490.01.T01:CDS | 50.0% | |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | - | Chr3:223339-223358 | MsG0380011490.01.T01:intron | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | + | Chr3:223437-223456 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | + | Chr3:223874-223893 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | + | Chr3:223875-223894 | None:intergenic | 50.0% |
| ! | TTGAGAGTCCCTTTGAGAGC+AGG | + | Chr3:223060-223079 | None:intergenic | 50.0% |
| AGAGGCCCTATGACCATTGC+TGG | + | Chr3:223407-223426 | None:intergenic | 55.0% | |
| CATACTTGGATCGCGAACGG+TGG | + | Chr3:222581-222600 | None:intergenic | 55.0% | |
| CGGCTTATCATCCGCACATC+TGG | + | Chr3:225053-225072 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | + | Chr3:223406-223425 | None:intergenic | 55.0% | |
| GGACCCCAGTACGTAACACA+TGG | - | Chr3:224631-224650 | MsG0380011490.01.T01:CDS | 55.0% | |
| GTATGTGTGACTGGCGCTTC+AGG | - | Chr3:222499-222518 | MsG0380011490.01.T01:three_prime_UTR | 55.0% | |
| GTCCGTGTCTGTGCTTCGTA+TGG | - | Chr3:222811-222830 | MsG0380011490.01.T01:intron | 55.0% | |
| TGTTACGTACTGGGGTCCAG+AGG | + | Chr3:224629-224648 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 222444 | 225388 | 222444 | ID=MsG0380011490.01;Name=MsG0380011490.01 |
| Chr3 | mRNA | 222444 | 225388 | 222444 | ID=MsG0380011490.01.T01;Parent=MsG0380011490.01;Name=MsG0380011490.01.T01;_AED=0.49;_eAED=0.49;_QI=31|1|1|1|1|1|5|190|325 |
| Chr3 | exon | 225237 | 225388 | 225237 | ID=MsG0380011490.01.T01:exon:19;Parent=MsG0380011490.01.T01 |
| Chr3 | exon | 224599 | 224960 | 224599 | ID=MsG0380011490.01.T01:exon:20;Parent=MsG0380011490.01.T01 |
| Chr3 | exon | 224353 | 224515 | 224353 | ID=MsG0380011490.01.T01:exon:21;Parent=MsG0380011490.01.T01 |
| Chr3 | exon | 223938 | 224124 | 223938 | ID=MsG0380011490.01.T01:exon:22;Parent=MsG0380011490.01.T01 |
| Chr3 | exon | 222444 | 222778 | 222444 | ID=MsG0380011490.01.T01:exon:23;Parent=MsG0380011490.01.T01 |
| Chr3 | five_prime_UTR | 225358 | 225388 | 225358 | ID=MsG0380011490.01.T01:five_prime_utr;Parent=MsG0380011490.01.T01 |
| Chr3 | CDS | 225237 | 225357 | 225237 | ID=MsG0380011490.01.T01:cds;Parent=MsG0380011490.01.T01 |
| Chr3 | CDS | 224599 | 224960 | 224599 | ID=MsG0380011490.01.T01:cds;Parent=MsG0380011490.01.T01 |
| Chr3 | CDS | 224353 | 224515 | 224353 | ID=MsG0380011490.01.T01:cds;Parent=MsG0380011490.01.T01 |
| Chr3 | CDS | 223938 | 224124 | 223938 | ID=MsG0380011490.01.T01:cds;Parent=MsG0380011490.01.T01 |
| Chr3 | CDS | 222634 | 222778 | 222634 | ID=MsG0380011490.01.T01:cds;Parent=MsG0380011490.01.T01 |
| Chr3 | three_prime_UTR | 222444 | 222633 | 222444 | ID=MsG0380011490.01.T01:three_prime_utr;Parent=MsG0380011490.01.T01 |
| Gene Sequence |
| Protein sequence |
