Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011491.01.T01 | XP_003598002.1 | 97.84 | 324 | 7 | 0 | 2 | 325 | 3 | 326 | 0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011491.01.T01 | A0A0B6VQ48 | 79.245 | 318 | 66 | 0 | 8 | 325 | 5 | 322 | 0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011491.01.T01 | G7IYC1 | 97.840 | 324 | 7 | 0 | 2 | 325 | 3 | 326 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011490.01 | MsG0380011491.01 | 0.913342 | 6.878672e-84 | 1.619333e-79 |
| MsG0380011491.01 | MsG0680030463.01 | 0.804110 | 2.527633e-49 | 1.292332e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380011491.01 | MsG0380014890.01 | PPI |
| MsG0580027412.01 | MsG0380011491.01 | PPI |
| MsG0180000131.01 | MsG0380011491.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011491.01.T01 | MTR_3g005170 | 97.840 | 324 | 7 | 0 | 2 | 325 | 3 | 326 | 0.0 | 654 |
| MsG0380011491.01.T01 | MTR_3g005210 | 90.938 | 320 | 29 | 0 | 6 | 325 | 3 | 322 | 0.0 | 604 |
| MsG0380011491.01.T01 | MTR_3g005170 | 88.272 | 324 | 7 | 1 | 2 | 325 | 3 | 295 | 0.0 | 569 |
| MsG0380011491.01.T01 | MTR_3g005170 | 97.834 | 277 | 6 | 0 | 2 | 278 | 3 | 279 | 0.0 | 561 |
| MsG0380011491.01.T01 | MTR_8g062440 | 71.827 | 323 | 90 | 1 | 3 | 325 | 2 | 323 | 2.15e-175 | 489 |
| MsG0380011491.01.T01 | MTR_8g062110 | 71.077 | 325 | 93 | 1 | 1 | 325 | 1 | 324 | 2.15e-174 | 486 |
| MsG0380011491.01.T01 | MTR_8g062110 | 71.077 | 325 | 93 | 1 | 1 | 325 | 10 | 333 | 2.36e-174 | 486 |
| MsG0380011491.01.T01 | MTR_4g077100 | 68.000 | 325 | 104 | 0 | 1 | 325 | 3 | 327 | 4.93e-174 | 485 |
| MsG0380011491.01.T01 | MTR_8g062440 | 71.605 | 324 | 90 | 2 | 3 | 325 | 2 | 324 | 1.70e-173 | 484 |
| MsG0380011491.01.T01 | MTR_4g077130 | 67.692 | 325 | 105 | 0 | 1 | 325 | 1 | 325 | 1.12e-171 | 479 |
| MsG0380011491.01.T01 | MTR_4g077100 | 68.345 | 278 | 88 | 0 | 1 | 278 | 3 | 280 | 1.07e-147 | 417 |
| MsG0380011491.01.T01 | MTR_8g062110 | 71.223 | 278 | 79 | 1 | 1 | 278 | 1 | 277 | 1.47e-146 | 414 |
| MsG0380011491.01.T01 | MTR_8g062110 | 71.223 | 278 | 79 | 1 | 1 | 278 | 1 | 277 | 1.87e-146 | 414 |
| MsG0380011491.01.T01 | MTR_8g062440 | 66.026 | 312 | 97 | 2 | 3 | 306 | 2 | 312 | 1.06e-145 | 414 |
| MsG0380011491.01.T01 | MTR_8g062110 | 70.742 | 229 | 66 | 1 | 97 | 325 | 11 | 238 | 5.05e-119 | 342 |
| MsG0380011491.01.T01 | MTR_4g006940 | 50.633 | 316 | 147 | 6 | 7 | 320 | 15 | 323 | 1.55e-96 | 289 |
| MsG0380011491.01.T01 | MTR_5g072620 | 47.368 | 323 | 164 | 5 | 5 | 324 | 1 | 320 | 3.71e-94 | 282 |
| MsG0380011491.01.T01 | MTR_8g062110 | 70.879 | 182 | 52 | 1 | 97 | 278 | 11 | 191 | 4.27e-91 | 270 |
| MsG0380011491.01.T01 | MTR_2g104960 | 47.239 | 326 | 163 | 6 | 2 | 325 | 13 | 331 | 1.58e-90 | 274 |
| MsG0380011491.01.T01 | MTR_3g031650 | 42.857 | 322 | 178 | 5 | 5 | 323 | 1 | 319 | 1.82e-86 | 263 |
| MsG0380011491.01.T01 | MTR_2g101330 | 43.671 | 316 | 170 | 6 | 9 | 320 | 5 | 316 | 1.34e-85 | 261 |
| MsG0380011491.01.T01 | MTR_5g056600 | 40.881 | 318 | 181 | 6 | 10 | 323 | 5 | 319 | 1.87e-83 | 255 |
| MsG0380011491.01.T01 | MTR_4g006940 | 51.292 | 271 | 124 | 5 | 9 | 278 | 17 | 280 | 2.84e-82 | 251 |
| MsG0380011491.01.T01 | MTR_4g006940 | 51.292 | 271 | 124 | 5 | 9 | 278 | 17 | 280 | 2.84e-82 | 251 |
| MsG0380011491.01.T01 | MTR_1g022440 | 40.123 | 324 | 185 | 5 | 3 | 320 | 2 | 322 | 8.22e-82 | 251 |
| MsG0380011491.01.T01 | MTR_4g009040 | 42.994 | 314 | 169 | 7 | 9 | 319 | 13 | 319 | 9.84e-79 | 243 |
| MsG0380011491.01.T01 | MTR_3g031650 | 44.815 | 270 | 143 | 5 | 5 | 271 | 1 | 267 | 7.00e-78 | 239 |
| MsG0380011491.01.T01 | MTR_1g022445 | 38.739 | 333 | 187 | 7 | 3 | 323 | 2 | 329 | 1.53e-77 | 240 |
| MsG0380011491.01.T01 | MTR_4g009040 | 42.767 | 318 | 168 | 8 | 9 | 319 | 13 | 323 | 6.23e-77 | 239 |
| MsG0380011491.01.T01 | MTR_0685s0030 | 64.024 | 164 | 59 | 0 | 162 | 325 | 1 | 164 | 1.72e-76 | 232 |
| MsG0380011491.01.T01 | MTR_4g009690 | 43.131 | 313 | 169 | 6 | 9 | 319 | 13 | 318 | 1.01e-71 | 225 |
| MsG0380011491.01.T01 | MTR_2g028620 | 40.483 | 331 | 183 | 9 | 2 | 324 | 3 | 327 | 1.08e-70 | 223 |
| MsG0380011491.01.T01 | MTR_4g009690 | 42.994 | 314 | 169 | 7 | 9 | 319 | 13 | 319 | 3.58e-70 | 221 |
| MsG0380011491.01.T01 | MTR_2g028620 | 43.682 | 277 | 142 | 9 | 2 | 270 | 3 | 273 | 1.21e-62 | 202 |
| MsG0380011491.01.T01 | MTR_4g092080 | 37.654 | 324 | 186 | 7 | 10 | 320 | 15 | 335 | 1.71e-62 | 202 |
| MsG0380011491.01.T01 | MTR_7g074820 | 35.890 | 326 | 194 | 7 | 9 | 323 | 8 | 329 | 1.89e-59 | 194 |
| MsG0380011491.01.T01 | MTR_4g081440 | 37.576 | 330 | 171 | 10 | 10 | 314 | 21 | 340 | 3.38e-59 | 194 |
| MsG0380011491.01.T01 | MTR_4g081440 | 38.182 | 330 | 170 | 11 | 10 | 314 | 25 | 345 | 4.62e-59 | 194 |
| MsG0380011491.01.T01 | MTR_7g074880 | 34.251 | 327 | 195 | 8 | 9 | 323 | 8 | 326 | 4.00e-58 | 190 |
| MsG0380011491.01.T01 | MTR_3g011130 | 80.172 | 116 | 22 | 1 | 100 | 214 | 30 | 145 | 7.70e-57 | 181 |
| MsG0380011491.01.T01 | MTR_7g074850 | 34.557 | 327 | 197 | 8 | 9 | 323 | 8 | 329 | 3.25e-56 | 185 |
| MsG0380011491.01.T01 | MTR_7g074730 | 34.154 | 325 | 200 | 7 | 9 | 323 | 8 | 328 | 1.95e-55 | 183 |
| MsG0380011491.01.T01 | MTR_7g074710 | 37.132 | 272 | 163 | 5 | 9 | 275 | 8 | 276 | 1.04e-52 | 176 |
| MsG0380011491.01.T01 | MTR_0685s0030 | 63.248 | 117 | 43 | 0 | 162 | 278 | 1 | 117 | 2.21e-50 | 163 |
| MsG0380011491.01.T01 | MTR_4g077150 | 48.023 | 177 | 40 | 4 | 99 | 275 | 21 | 145 | 1.93e-46 | 155 |
| MsG0380011491.01.T01 | MTR_4g023730 | 34.752 | 282 | 168 | 7 | 4 | 275 | 3 | 278 | 6.70e-45 | 156 |
| MsG0380011491.01.T01 | MTR_0164s0070 | 52.381 | 126 | 59 | 1 | 9 | 133 | 5 | 130 | 5.19e-39 | 137 |
| MsG0380011491.01.T01 | MTR_7g074870 | 31.010 | 287 | 187 | 7 | 44 | 323 | 6 | 288 | 1.74e-38 | 138 |
| MsG0380011491.01.T01 | MTR_1g099230 | 95.161 | 62 | 3 | 0 | 100 | 161 | 36 | 97 | 1.04e-34 | 125 |
| MsG0380011491.01.T01 | MTR_6g406250 | 29.022 | 317 | 195 | 11 | 8 | 309 | 54 | 355 | 2.88e-33 | 126 |
| MsG0380011491.01.T01 | MTR_2g013250 | 31.741 | 293 | 173 | 6 | 9 | 278 | 7 | 295 | 5.71e-33 | 125 |
| MsG0380011491.01.T01 | MTR_5g029990 | 26.073 | 303 | 202 | 7 | 7 | 303 | 10 | 296 | 7.71e-31 | 118 |
| MsG0380011491.01.T01 | MTR_7g117190 | 31.987 | 297 | 174 | 9 | 9 | 281 | 7 | 299 | 8.83e-31 | 119 |
| MsG0380011491.01.T01 | MTR_7g117190 | 31.410 | 312 | 181 | 10 | 9 | 296 | 7 | 309 | 1.61e-30 | 117 |
| MsG0380011491.01.T01 | MTR_2g013260 | 31.399 | 293 | 174 | 6 | 9 | 278 | 8 | 296 | 1.73e-30 | 117 |
| MsG0380011491.01.T01 | MTR_2g013230 | 30.872 | 298 | 169 | 7 | 9 | 278 | 8 | 296 | 3.16e-30 | 117 |
| MsG0380011491.01.T01 | MTR_2g013260 | 31.399 | 293 | 174 | 6 | 9 | 278 | 8 | 296 | 5.49e-30 | 117 |
| MsG0380011491.01.T01 | MTR_6g406250 | 32.000 | 200 | 118 | 5 | 8 | 197 | 54 | 245 | 7.68e-28 | 109 |
| MsG0380011491.01.T01 | MTR_8g062710 | 46.250 | 80 | 32 | 2 | 9 | 88 | 20 | 88 | 7.09e-14 | 67.8 |
| MsG0380011491.01.T01 | MTR_8g062490 | 51.562 | 64 | 31 | 0 | 216 | 279 | 54 | 117 | 1.23e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011491.01.T01 | AT5G19440 | 75.926 | 324 | 78 | 0 | 2 | 325 | 3 | 326 | 0.0 | 528 |
| MsG0380011491.01.T01 | AT1G51410 | 75.077 | 325 | 81 | 0 | 1 | 325 | 1 | 325 | 0.0 | 527 |
| MsG0380011491.01.T01 | AT1G09510 | 53.145 | 318 | 149 | 0 | 6 | 323 | 5 | 322 | 2.90e-121 | 352 |
| MsG0380011491.01.T01 | AT1G09480 | 53.968 | 315 | 145 | 0 | 6 | 320 | 5 | 319 | 6.87e-121 | 350 |
| MsG0380011491.01.T01 | AT1G09480 | 53.968 | 315 | 145 | 0 | 6 | 320 | 52 | 366 | 1.64e-120 | 351 |
| MsG0380011491.01.T01 | AT1G09490 | 53.651 | 315 | 146 | 0 | 6 | 320 | 5 | 319 | 8.65e-119 | 345 |
| MsG0380011491.01.T01 | AT1G66800 | 53.651 | 315 | 142 | 1 | 6 | 320 | 5 | 315 | 3.92e-113 | 331 |
| MsG0380011491.01.T01 | AT1G09500 | 52.025 | 321 | 151 | 3 | 6 | 323 | 5 | 325 | 4.10e-112 | 328 |
| MsG0380011491.01.T01 | AT1G09500 | 53.650 | 274 | 126 | 1 | 6 | 278 | 5 | 278 | 1.60e-102 | 302 |
| MsG0380011491.01.T01 | AT4G35420 | 46.226 | 318 | 166 | 4 | 9 | 324 | 8 | 322 | 1.32e-95 | 286 |
| MsG0380011491.01.T01 | AT1G09490 | 49.821 | 279 | 140 | 0 | 42 | 320 | 10 | 288 | 7.07e-95 | 283 |
| MsG0380011491.01.T01 | AT1G15950 | 48.137 | 322 | 158 | 6 | 1 | 320 | 5 | 319 | 1.03e-91 | 277 |
| MsG0380011491.01.T01 | AT1G15950 | 48.137 | 322 | 158 | 6 | 1 | 320 | 5 | 319 | 1.03e-91 | 277 |
| MsG0380011491.01.T01 | AT5G58490 | 45.872 | 327 | 171 | 5 | 1 | 324 | 1 | 324 | 5.89e-91 | 275 |
| MsG0380011491.01.T01 | AT1G09500 | 48.432 | 287 | 145 | 3 | 40 | 323 | 5 | 291 | 3.06e-89 | 269 |
| MsG0380011491.01.T01 | AT1G15950 | 47.619 | 315 | 156 | 6 | 1 | 313 | 5 | 312 | 6.19e-88 | 267 |
| MsG0380011491.01.T01 | AT1G80820 | 46.584 | 322 | 163 | 7 | 6 | 325 | 5 | 319 | 5.76e-87 | 265 |
| MsG0380011491.01.T01 | AT1G15950 | 48.746 | 279 | 135 | 5 | 1 | 278 | 5 | 276 | 1.21e-79 | 244 |
| MsG0380011491.01.T01 | AT1G15950 | 48.084 | 287 | 140 | 6 | 1 | 286 | 5 | 283 | 2.54e-79 | 244 |
| MsG0380011491.01.T01 | AT2G02400 | 40.752 | 319 | 179 | 7 | 9 | 323 | 6 | 318 | 4.80e-79 | 244 |
| MsG0380011491.01.T01 | AT1G15950 | 48.736 | 277 | 134 | 5 | 1 | 276 | 5 | 274 | 6.97e-79 | 242 |
| MsG0380011491.01.T01 | AT1G68540 | 41.077 | 297 | 165 | 5 | 11 | 301 | 6 | 298 | 3.89e-76 | 236 |
| MsG0380011491.01.T01 | AT1G80820 | 47.445 | 274 | 136 | 6 | 6 | 278 | 5 | 271 | 2.01e-73 | 228 |
| MsG0380011491.01.T01 | AT2G33590 | 41.379 | 319 | 178 | 6 | 9 | 324 | 9 | 321 | 6.47e-71 | 223 |
| MsG0380011491.01.T01 | AT5G42800 | 38.199 | 322 | 190 | 5 | 8 | 323 | 7 | 325 | 1.25e-68 | 219 |
| MsG0380011491.01.T01 | AT1G76470 | 42.722 | 316 | 170 | 9 | 9 | 318 | 7 | 317 | 5.84e-66 | 211 |
| MsG0380011491.01.T01 | AT2G33600 | 41.250 | 320 | 177 | 7 | 9 | 324 | 9 | 321 | 3.58e-65 | 208 |
| MsG0380011491.01.T01 | AT1G25460 | 37.380 | 313 | 191 | 5 | 11 | 320 | 6 | 316 | 4.03e-64 | 206 |
| MsG0380011491.01.T01 | AT1G61720 | 35.093 | 322 | 191 | 6 | 10 | 319 | 14 | 329 | 1.94e-56 | 186 |
| MsG0380011491.01.T01 | AT4G27250 | 35.347 | 331 | 193 | 9 | 10 | 325 | 14 | 338 | 6.35e-56 | 185 |
| MsG0380011491.01.T01 | AT4G27250 | 35.000 | 340 | 192 | 10 | 10 | 325 | 14 | 348 | 1.74e-55 | 184 |
| MsG0380011491.01.T01 | AT1G15950 | 44.395 | 223 | 120 | 4 | 100 | 320 | 1 | 221 | 1.66e-51 | 171 |
| MsG0380011491.01.T01 | AT2G45400 | 32.680 | 306 | 197 | 3 | 7 | 303 | 38 | 343 | 2.99e-47 | 163 |
| MsG0380011491.01.T01 | AT2G45400 | 33.692 | 279 | 176 | 3 | 7 | 276 | 38 | 316 | 2.88e-46 | 159 |
| MsG0380011491.01.T01 | AT2G23910 | 29.779 | 272 | 180 | 6 | 10 | 278 | 11 | 274 | 1.06e-42 | 149 |
| MsG0380011491.01.T01 | AT2G23910 | 30.000 | 270 | 178 | 6 | 10 | 276 | 11 | 272 | 1.15e-42 | 149 |
| MsG0380011491.01.T01 | AT2G23910 | 30.000 | 270 | 178 | 6 | 10 | 276 | 11 | 272 | 1.83e-42 | 149 |
| MsG0380011491.01.T01 | AT4G30470 | 29.617 | 287 | 190 | 6 | 7 | 290 | 8 | 285 | 2.44e-41 | 146 |
| MsG0380011491.01.T01 | AT2G45400 | 35.484 | 217 | 133 | 2 | 7 | 216 | 38 | 254 | 7.27e-39 | 138 |
| MsG0380011491.01.T01 | AT1G68540 | 36.979 | 192 | 118 | 3 | 112 | 301 | 1 | 191 | 2.14e-38 | 135 |
| MsG0380011491.01.T01 | AT2G23910 | 29.386 | 228 | 150 | 6 | 52 | 276 | 19 | 238 | 5.46e-32 | 120 |
| MsG0380011491.01.T01 | AT2G45400 | 29.259 | 270 | 184 | 2 | 41 | 303 | 17 | 286 | 3.70e-31 | 119 |
| MsG0380011491.01.T01 | AT5G14700 | 27.551 | 294 | 193 | 10 | 1 | 281 | 46 | 332 | 1.14e-29 | 116 |
| MsG0380011491.01.T01 | AT5G14700 | 29.778 | 225 | 144 | 7 | 1 | 216 | 46 | 265 | 1.09e-24 | 101 |
| MsG0380011491.01.T01 | AT4G33360 | 24.138 | 261 | 169 | 8 | 9 | 262 | 15 | 253 | 1.31e-12 | 67.8 |
| MsG0380011491.01.T01 | AT4G33360 | 24.138 | 261 | 169 | 8 | 9 | 262 | 3 | 241 | 1.47e-12 | 67.8 |
| MsG0380011491.01.T01 | AT4G33360 | 24.138 | 261 | 169 | 8 | 9 | 262 | 15 | 253 | 1.70e-12 | 67.8 |
Find 88 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCATCCCAAACTAGAATT+TGG | 0.171474 | 3:-299965 | None:intergenic |
| GACATTTCCAAATTCTAGTT+TGG | 0.253982 | 3:+299958 | MsG0380011491.01.T01:CDS |
| AACCAAGTGGTCAACCTTCT+TGG | 0.257463 | 3:-299120 | None:intergenic |
| AAACTTAAGTATGTGAAATA+AGG | 0.257685 | 3:+301496 | MsG0380011491.01.T01:three_prime_UTR |
| CATTCTCGTACGCCAGAATA+TGG | 0.258064 | 3:-300012 | None:intergenic |
| ATTGCTGCTGTTGCGTATAA+TGG | 0.272149 | 3:+299380 | MsG0380011491.01.T01:CDS |
| GCAATTCTAAACCTGATTAA+TGG | 0.275531 | 3:+299701 | MsG0380011491.01.T01:CDS |
| AATTATTAATCTTACTTCTC+TGG | 0.283324 | 3:-300130 | None:intergenic |
| TCTTTGGAAACCTGATATAT+AGG | 0.308566 | 3:-301320 | None:intergenic |
| TAAAGAAAACAACATTGATA+TGG | 0.308617 | 3:+299613 | MsG0380011491.01.T01:CDS |
| CTTCAGGTTACATCGCTTCA+TGG | 0.319947 | 3:+298761 | MsG0380011491.01.T01:CDS |
| TTGCAGCAGCACTTGTGTTT+AGG | 0.321177 | 3:-299682 | None:intergenic |
| CTGAAATAAGTCATTCTTCA+TGG | 0.322867 | 3:+301549 | MsG0380011491.01.T01:three_prime_UTR |
| TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3:+300000 | MsG0380011491.01.T01:CDS |
| GTAATTAATTACCATTAATC+AGG | 0.328588 | 3:-299712 | None:intergenic |
| AACATGGAGACACAAATTAA+AGG | 0.354649 | 3:-301433 | None:intergenic |
| AGTTAAGGTAATCTGTGTTT+TGG | 0.355154 | 3:+301604 | MsG0380011491.01.T01:three_prime_UTR |
| ATTAACCCAGCAATGGTCAT+AGG | 0.359026 | 3:+299641 | MsG0380011491.01.T01:CDS |
| GCCTTTGATTCTGTTGTTCA+AGG | 0.362009 | 3:+299203 | MsG0380011491.01.T01:CDS |
| GTCCTTGACATCATGATAGA+AGG | 0.366719 | 3:-299255 | None:intergenic |
| GTATGTGTGACTGGCGCTTC+AGG | 0.374333 | 3:+298745 | MsG0380011491.01.T01:CDS |
| ATAAGTCATTCTTCATGGTT+TGG | 0.375009 | 3:+301554 | MsG0380011491.01.T01:three_prime_UTR |
| GTGTCTCCATGTTTAGTTGA+TGG | 0.383916 | 3:+301443 | MsG0380011491.01.T01:three_prime_UTR |
| ACCAAGTGGTCAACCTTCTT+GGG | 0.387248 | 3:-299119 | None:intergenic |
| GGTTTGGTTTGTACTCTTGA+TGG | 0.388763 | 3:+301570 | MsG0380011491.01.T01:three_prime_UTR |
| ACATTTCCAAATTCTAGTTT+GGG | 0.393375 | 3:+299959 | MsG0380011491.01.T01:CDS |
| AGAGGCCCTATGACCATTGC+TGG | 0.404733 | 3:-299647 | None:intergenic |
| GGTTTAAATTAAATCTAGAT+TGG | 0.409983 | 3:+301517 | MsG0380011491.01.T01:three_prime_UTR |
| ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3:-300129 | None:intergenic |
| GGAGAGATTGCAACTGTTCA+AGG | 0.418796 | 3:+299160 | MsG0380011491.01.T01:CDS |
| GCCGTATGTGCCTATATATC+AGG | 0.426554 | 3:+301310 | MsG0380011491.01.T01:CDS |
| GGGACTTGAGTATACTCCTT+TGG | 0.434471 | 3:+301358 | MsG0380011491.01.T01:CDS |
| GACCACTTGGTTAAGCTTGA+AGG | 0.439383 | 3:+299131 | MsG0380011491.01.T01:CDS |
| CAAAGAAAAGGCGAAAAGCT+TGG | 0.447824 | 3:+301337 | MsG0380011491.01.T01:CDS |
| TCCCAAGAAGGTTGACCACT+TGG | 0.453559 | 3:+299118 | MsG0380011491.01.T01:CDS |
| GAGAAAATGAGCAGCAACTT+GGG | 0.454229 | 3:+298715 | MsG0380011491.01.T01:exon |
| AGACAAGACGTTTGAGTGAT+GGG | 0.455678 | 3:-299346 | None:intergenic |
| AAAGAAAAGGCGAAAAGCTT+GGG | 0.461360 | 3:+301338 | MsG0380011491.01.T01:CDS |
| AGAGAAAATGAGCAGCAACT+TGG | 0.464708 | 3:+298714 | MsG0380011491.01.T01:exon |
| CCATGTTTAGTTGATGGACA+TGG | 0.467956 | 3:+301449 | MsG0380011491.01.T01:three_prime_UTR |
| TCCAAATTCTAGTTTGGGAT+GGG | 0.474083 | 3:+299964 | MsG0380011491.01.T01:CDS |
| ATGGAACAGTGAATGAGTTA+AGG | 0.477738 | 3:+301589 | MsG0380011491.01.T01:three_prime_UTR |
| TTCCAAATTCTAGTTTGGGA+TGG | 0.486809 | 3:+299963 | MsG0380011491.01.T01:CDS |
| ATATCAGGTTTCCAAAGAAA+AGG | 0.488979 | 3:+301325 | MsG0380011491.01.T01:CDS |
| TTGAGAGTCCCTTTGAGAGC+AGG | 0.491416 | 3:-299299 | None:intergenic |
| ATTGTTTCAGCTGTGGTATG+TGG | 0.496971 | 3:+299550 | MsG0380011491.01.T01:intron |
| ATTCTCGTACGCCAGAATAT+GGG | 0.502026 | 3:-300011 | None:intergenic |
| TTGATTGATCCTGCTCTCAA+AGG | 0.509724 | 3:+299290 | MsG0380011491.01.T01:CDS |
| GTCTCATCGACAACAACATC+AGG | 0.511018 | 3:-299416 | None:intergenic |
| TTTAGGACTGGTTGCAAGAG+AGG | 0.512693 | 3:-299665 | None:intergenic |
| ACCTGATATATAGGCACATA+CGG | 0.513032 | 3:-301311 | None:intergenic |
| TGATTGATCCTGCTCTCAAA+GGG | 0.514573 | 3:+299291 | MsG0380011491.01.T01:CDS |
| ATTAAATCTAGATTGGTACT+AGG | 0.515463 | 3:+301524 | MsG0380011491.01.T01:three_prime_UTR |
| TCATGATGTCAAGGACCCTC+AGG | 0.517650 | 3:+299262 | MsG0380011491.01.T01:CDS |
| GCAGCACTTGTGTTTAGGAC+TGG | 0.518349 | 3:-299677 | None:intergenic |
| AAGACAAGACGTTTGAGTGA+TGG | 0.518377 | 3:-299347 | None:intergenic |
| TCTGTTGTTCAAGGTTGTCA+TGG | 0.518898 | 3:+299212 | MsG0380011491.01.T01:CDS |
| TACGAGAATGCTTCAGCTAG+TGG | 0.527796 | 3:+300025 | MsG0380011491.01.T01:CDS |
| GTCCGATTGCTTCTTAATCG+TGG | 0.529226 | 3:+298787 | MsG0380011491.01.T01:CDS |
| GGTTAAGCTTGAAGGTGCTA+AGG | 0.535332 | 3:+299139 | MsG0380011491.01.T01:CDS |
| CCATGTCCATCAACTAAACA+TGG | 0.541535 | 3:-301449 | None:intergenic |
| TCCTTGATGCTCACTTCCAA+AGG | 0.541588 | 3:-301374 | None:intergenic |
| TTAACCCAGCAATGGTCATA+GGG | 0.542832 | 3:+299642 | MsG0380011491.01.T01:CDS |
| CAAGGCAAATCTACTTGAAG+AGG | 0.550142 | 3:+299178 | MsG0380011491.01.T01:CDS |
| GGAAATGTTGTATGTGTGAC+TGG | 0.550828 | 3:+298736 | MsG0380011491.01.T01:CDS |
| GACAAGACGTTTGAGTGATG+GGG | 0.560252 | 3:-299345 | None:intergenic |
| TCCCTTCTATCATGATGTCA+AGG | 0.565747 | 3:+299253 | MsG0380011491.01.T01:CDS |
| ACCTTGAACAACAGAATCAA+AGG | 0.567407 | 3:-299204 | None:intergenic |
| ATGTTGTTGTCGATGAGACT+TGG | 0.571264 | 3:+299420 | MsG0380011491.01.T01:CDS |
| CATTGGCTGAAGAAGCTGCA+TGG | 0.580278 | 3:+299582 | MsG0380011491.01.T01:CDS |
| TCCTTGACATCATGATAGAA+GGG | 0.582694 | 3:-299254 | None:intergenic |
| TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3:-300115 | None:intergenic |
| GTATGTGGTTTCAAAGACAT+TGG | 0.606075 | 3:+299565 | MsG0380011491.01.T01:CDS |
| ACAACAACATCAGGAGTTCG+AGG | 0.607925 | 3:-299407 | None:intergenic |
| CACCTTCAAGCTTAACCAAG+TGG | 0.608434 | 3:-299133 | None:intergenic |
| GCCTGTAGATGATCCCAAGA+AGG | 0.612585 | 3:+299106 | MsG0380011491.01.T01:intron |
| AGCCACGATTAAGAAGCAAT+CGG | 0.615772 | 3:-298789 | None:intergenic |
| TCCTTTGGAAGTGAGCATCA+AGG | 0.622590 | 3:+301373 | MsG0380011491.01.T01:CDS |
| CACACTACTCAGAAGTTGTG+AGG | 0.628161 | 3:+300074 | MsG0380011491.01.T01:CDS |
| AATACTTGGATCGCGAACGG+TGG | 0.629535 | 3:-298824 | None:intergenic |
| GAGGCCCTATGACCATTGCT+GGG | 0.631385 | 3:-299646 | None:intergenic |
| GGATCAATCAATTCAGCCTG+AGG | 0.632382 | 3:-299278 | None:intergenic |
| GGTTACTATTAACCCAGCAA+TGG | 0.635018 | 3:+299634 | MsG0380011491.01.T01:CDS |
| ACAAATACTTGGATCGCGAA+CGG | 0.645774 | 3:-298827 | None:intergenic |
| TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3:-300114 | None:intergenic |
| AAGGCAAATCTACTTGAAGA+GGG | 0.656212 | 3:+299179 | MsG0380011491.01.T01:CDS |
| AACTATGTTTACCAGATGTG+CGG | 0.691679 | 3:+301280 | MsG0380011491.01.T01:intron |
| GATCAATCAATTCAGCCTGA+GGG | 0.692249 | 3:-299277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATGTAAATACAGAAA+CGG | - | Chr3:301197-301216 | None:intergenic | 15.0% |
| !!! | ATTAAGTGTTTCTAAAAATA+CGG | + | Chr3:301070-301089 | MsG0380011491.01.T01:intron | 15.0% |
| !! | AAACTTAAGTATGTGAAATA+AGG | + | Chr3:301496-301515 | MsG0380011491.01.T01:three_prime_UTR | 20.0% |
| !! | AATAGAATCTCTCAAAATAA+GGG | + | Chr3:300428-300447 | MsG0380011491.01.T01:intron | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | - | Chr3:300133-300152 | None:intergenic | 20.0% |
| !! | ACTATCATATAGTTAAAGTA+TGG | + | Chr3:300631-300650 | MsG0380011491.01.T01:intron | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | - | Chr3:300132-300151 | None:intergenic | 20.0% |
| !! | CAATTTAATGCTAAAATGAA+AGG | + | Chr3:300254-300273 | MsG0380011491.01.T01:intron | 20.0% |
| !! | CTATCATATAGTTAAAGTAT+GGG | + | Chr3:300632-300651 | MsG0380011491.01.T01:intron | 20.0% |
| !! | GGTTTAAATTAAATCTAGAT+TGG | + | Chr3:301517-301536 | MsG0380011491.01.T01:three_prime_UTR | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | - | Chr3:299715-299734 | None:intergenic | 20.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | + | Chr3:299613-299632 | MsG0380011491.01.T01:CDS | 20.0% |
| !! | TTTACATAACAAGATTGTAA+AGG | + | Chr3:300396-300415 | MsG0380011491.01.T01:intron | 20.0% |
| !!! | AAATAAAGCTTTAAAGAATG+TGG | - | Chr3:300220-300239 | None:intergenic | 20.0% |
| !!! | GTTAAAAAGTACAGAAATAA+TGG | - | Chr3:300837-300856 | None:intergenic | 20.0% |
| !!! | TGTACTGAATTTTTCATTTT+GGG | + | Chr3:301035-301054 | MsG0380011491.01.T01:intron | 20.0% |
| !!! | TTGTACTGAATTTTTCATTT+TGG | + | Chr3:301034-301053 | MsG0380011491.01.T01:intron | 20.0% |
| ! | ACCAATAATAATTTCAATCC+GGG | - | Chr3:298991-299010 | None:intergenic | 25.0% |
| ! | ATAACACCTTCTATCATATT+GGG | + | Chr3:300931-300950 | MsG0380011491.01.T01:intron | 25.0% |
| ! | ATTAAATCTAGATTGGTACT+AGG | + | Chr3:301524-301543 | MsG0380011491.01.T01:three_prime_UTR | 25.0% |
| ! | ATTGAAATTATTATTGGTGG+TGG | + | Chr3:298993-299012 | MsG0380011491.01.T01:intron | 25.0% |
| ! | CAATAGAATCTCTCAAAATA+AGG | + | Chr3:300427-300446 | MsG0380011491.01.T01:intron | 25.0% |
| ! | CACCAATAATAATTTCAATC+CGG | - | Chr3:298992-299011 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAGACAAATACT+TGG | - | Chr3:298841-298860 | None:intergenic | 25.0% |
| ! | GAGTATAAAACAACATTTCT+AGG | - | Chr3:301117-301136 | None:intergenic | 25.0% |
| ! | TATAACACCTTCTATCATAT+TGG | + | Chr3:300930-300949 | MsG0380011491.01.T01:intron | 25.0% |
| ! | TCTTTAATGTATACGGAAAA+AGG | + | Chr3:300312-300331 | MsG0380011491.01.T01:intron | 25.0% |
| !! | AATAAGGGAAAGTACATTAA+TGG | + | Chr3:300443-300462 | MsG0380011491.01.T01:intron | 25.0% |
| !! | GTTTTATACTCGAAAATCAT+AGG | + | Chr3:301126-301145 | MsG0380011491.01.T01:intron | 25.0% |
| !!! | ACATTTCCAAATTCTAGTTT+GGG | + | Chr3:299959-299978 | MsG0380011491.01.T01:CDS | 25.0% |
| !!! | GGTTGTTTCTTTAATGTATA+CGG | + | Chr3:300305-300324 | MsG0380011491.01.T01:intron | 25.0% |
| !!! | TTAAGTTTTTTCACAAGCAT+AGG | - | Chr3:301484-301503 | None:intergenic | 25.0% |
| AACATGAGCTATAAATCGAA+AGG | - | Chr3:300789-300808 | None:intergenic | 30.0% | |
| AACATGGAGACACAAATTAA+AGG | - | Chr3:301436-301455 | None:intergenic | 30.0% | |
| AAGTTACCCAATATGATAGA+AGG | - | Chr3:300940-300959 | None:intergenic | 30.0% | |
| ACAGAATGATGAATCATGTA+GGG | - | Chr3:301174-301193 | None:intergenic | 30.0% | |
| ACCCGGATTGAAATTATTAT+TGG | + | Chr3:298987-299006 | MsG0380011491.01.T01:intron | 30.0% | |
| ACTCGAAAATCATAGGTTAA+TGG | + | Chr3:301133-301152 | MsG0380011491.01.T01:intron | 30.0% | |
| AGCTTCTATTATCTACAGAA+GGG | - | Chr3:299911-299930 | None:intergenic | 30.0% | |
| ATAAGTCATTCTTCATGGTT+TGG | + | Chr3:301554-301573 | MsG0380011491.01.T01:three_prime_UTR | 30.0% | |
| ATAGAGAACATATCAACTAG+GGG | - | Chr3:300608-300627 | None:intergenic | 30.0% | |
| ATATCAGGTTTCCAAAGAAA+AGG | + | Chr3:301325-301344 | MsG0380011491.01.T01:CDS | 30.0% | |
| ATTGATTATACAGACCAAGT+TGG | - | Chr3:300541-300560 | None:intergenic | 30.0% | |
| CAAATATGTTTGTGTTCAAG+AGG | + | Chr3:299874-299893 | MsG0380011491.01.T01:intron | 30.0% | |
| CGGATTGAAATTATTATTGG+TGG | + | Chr3:298990-299009 | MsG0380011491.01.T01:intron | 30.0% | |
| CTGAAATAAGTCATTCTTCA+TGG | + | Chr3:301549-301568 | MsG0380011491.01.T01:three_prime_UTR | 30.0% | |
| GATAGAGAACATATCAACTA+GGG | - | Chr3:300609-300628 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | + | Chr3:299701-299720 | MsG0380011491.01.T01:CDS | 30.0% | |
| TAACTATAATCACCTTCTAG+CGG | + | Chr3:300494-300513 | MsG0380011491.01.T01:intron | 30.0% | |
| TACAGAAGACACAAAAATAG+AGG | - | Chr3:300987-301006 | None:intergenic | 30.0% | |
| TATATTCTATGCATCCAACT+TGG | + | Chr3:300524-300543 | MsG0380011491.01.T01:intron | 30.0% | |
| TGATAGAGAACATATCAACT+AGG | - | Chr3:300610-300629 | None:intergenic | 30.0% | |
| ! | AATATGTATGTGTCCTGTTT+TGG | + | Chr3:299017-299036 | MsG0380011491.01.T01:intron | 30.0% |
| ! | AGTTAAGGTAATCTGTGTTT+TGG | + | Chr3:301604-301623 | MsG0380011491.01.T01:three_prime_UTR | 30.0% |
| ! | CAATCTTGTTATGTAAAGCA+AGG | - | Chr3:300393-300412 | None:intergenic | 30.0% |
| ! | CATTGCTAATAGTTGATTCA+GGG | + | Chr3:300284-300303 | MsG0380011491.01.T01:intron | 30.0% |
| ! | GACATTTCCAAATTCTAGTT+TGG | + | Chr3:299958-299977 | MsG0380011491.01.T01:CDS | 30.0% |
| ! | TCATTGCTAATAGTTGATTC+AGG | + | Chr3:300283-300302 | MsG0380011491.01.T01:intron | 30.0% |
| ! | TCTTTGGAAACCTGATATAT+AGG | - | Chr3:301323-301342 | None:intergenic | 30.0% |
| !! | AAAACAACATTTCTAGGACT+TGG | - | Chr3:301111-301130 | None:intergenic | 30.0% |
| AAAGAAAAGGCGAAAAGCTT+GGG | + | Chr3:301338-301357 | MsG0380011491.01.T01:CDS | 35.0% | |
| AACTATAATCACCTTCTAGC+GGG | + | Chr3:300495-300514 | MsG0380011491.01.T01:intron | 35.0% | |
| AACTATGTTTACCAGATGTG+CGG | + | Chr3:301280-301299 | MsG0380011491.01.T01:intron | 35.0% | |
| AAGCAACAATGAAGCAATTG+GGG | - | Chr3:299817-299836 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAAGA+GGG | + | Chr3:299179-299198 | MsG0380011491.01.T01:CDS | 35.0% | |
| AATCAATTCGTCCACAAACT+TGG | - | Chr3:300660-300679 | None:intergenic | 35.0% | |
| ACAAGCAACAATGAAGCAAT+TGG | - | Chr3:299819-299838 | None:intergenic | 35.0% | |
| ACCTGATATATAGGCACATA+CGG | - | Chr3:301314-301333 | None:intergenic | 35.0% | |
| ACCTTGAACAACAGAATCAA+AGG | - | Chr3:299207-299226 | None:intergenic | 35.0% | |
| ATGGAACAGTGAATGAGTTA+AGG | + | Chr3:301589-301608 | MsG0380011491.01.T01:three_prime_UTR | 35.0% | |
| CAAGCAACAATGAAGCAATT+GGG | - | Chr3:299818-299837 | None:intergenic | 35.0% | |
| CACATCTATGTGGATGAATT+GGG | + | Chr3:300718-300737 | MsG0380011491.01.T01:intron | 35.0% | |
| GAAGACACAAAAATAGAGGA+AGG | - | Chr3:300983-301002 | None:intergenic | 35.0% | |
| GACAGAATGATGAATCATGT+AGG | - | Chr3:301175-301194 | None:intergenic | 35.0% | |
| GAGCTTCTATTATCTACAGA+AGG | - | Chr3:299912-299931 | None:intergenic | 35.0% | |
| GTATGTGGTTTCAAAGACAT+TGG | + | Chr3:299565-299584 | MsG0380011491.01.T01:CDS | 35.0% | |
| TCCTTGACATCATGATAGAA+GGG | - | Chr3:299257-299276 | None:intergenic | 35.0% | |
| TTTAACACATATTCAGCCTC+TGG | + | Chr3:300851-300870 | MsG0380011491.01.T01:intron | 35.0% | |
| !! | ATTCAAAACCGTGTTTTGAG+AGG | - | Chr3:299490-299509 | None:intergenic | 35.0% |
| !! | TCCAAATTCTAGTTTGGGAT+GGG | + | Chr3:299964-299983 | MsG0380011491.01.T01:CDS | 35.0% |
| !! | TTCCAAATTCTAGTTTGGGA+TGG | + | Chr3:299963-299982 | MsG0380011491.01.T01:CDS | 35.0% |
| AAACCATGTGTTACGTACTG+GGG | - | Chr3:300878-300897 | None:intergenic | 40.0% | |
| AAGACAAGACGTTTGAGTGA+TGG | - | Chr3:299350-299369 | None:intergenic | 40.0% | |
| AAGTATGGGTACCAAGTTTG+TGG | + | Chr3:300646-300665 | MsG0380011491.01.T01:intron | 40.0% | |
| ACAAACACCAACACCAAAAC+AGG | - | Chr3:299033-299052 | None:intergenic | 40.0% | |
| ACAAATACTTGGATCGCGAA+CGG | - | Chr3:298830-298849 | None:intergenic | 40.0% | |
| ACCCATCCCAAACTAGAATT+TGG | - | Chr3:299968-299987 | None:intergenic | 40.0% | |
| AGACAAGACGTTTGAGTGAT+GGG | - | Chr3:299349-299368 | None:intergenic | 40.0% | |
| AGAGAAAATGAGCAGCAACT+TGG | + | Chr3:298714-298733 | MsG0380011491.01.T01:exon | 40.0% | |
| AGCAACAATGAAGCAATTGG+GGG | - | Chr3:299816-299835 | None:intergenic | 40.0% | |
| AGCCACGATTAAGAAGCAAT+CGG | - | Chr3:298792-298811 | None:intergenic | 40.0% | |
| ATAATTTCAATCCGGGTGTC+TGG | - | Chr3:298984-299003 | None:intergenic | 40.0% | |
| ATATATATGCTCCCGCTAGA+AGG | - | Chr3:300509-300528 | None:intergenic | 40.0% | |
| ATCTATGTGGATGAATTGGG+AGG | + | Chr3:300721-300740 | MsG0380011491.01.T01:intron | 40.0% | |
| ATGTTGTTGTCGATGAGACT+TGG | + | Chr3:299420-299439 | MsG0380011491.01.T01:CDS | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | + | Chr3:299641-299660 | MsG0380011491.01.T01:CDS | 40.0% | |
| ATTCTCGTACGCCAGAATAT+GGG | - | Chr3:300014-300033 | None:intergenic | 40.0% | |
| ATTGCTGCTGTTGCGTATAA+TGG | + | Chr3:299380-299399 | MsG0380011491.01.T01:CDS | 40.0% | |
| ATTGTTTCAGCTGTGGTATG+TGG | + | Chr3:299550-299569 | MsG0380011491.01.T01:intron | 40.0% | |
| CAAAGAAAAGGCGAAAAGCT+TGG | + | Chr3:301337-301356 | MsG0380011491.01.T01:CDS | 40.0% | |
| CAAGGCAAATCTACTTGAAG+AGG | + | Chr3:299178-299197 | MsG0380011491.01.T01:CDS | 40.0% | |
| CCACAGCTGAAACAATCAAT+AGG | - | Chr3:299546-299565 | None:intergenic | 40.0% | |
| CCATGTCCATCAACTAAACA+TGG | - | Chr3:301452-301471 | None:intergenic | 40.0% | |
| CTCTTTCACTTCATTGATGC+AGG | + | Chr3:299929-299948 | MsG0380011491.01.T01:intron | 40.0% | |
| GAAACCATGTGTTACGTACT+GGG | - | Chr3:300879-300898 | None:intergenic | 40.0% | |
| GAGAAAATGAGCAGCAACTT+GGG | + | Chr3:298715-298734 | MsG0380011491.01.T01:exon | 40.0% | |
| GATCAATCAATTCAGCCTGA+GGG | - | Chr3:299280-299299 | None:intergenic | 40.0% | |
| GCACATCTATGTGGATGAAT+TGG | + | Chr3:300717-300736 | MsG0380011491.01.T01:intron | 40.0% | |
| GCCTTTGATTCTGTTGTTCA+AGG | + | Chr3:299203-299222 | MsG0380011491.01.T01:CDS | 40.0% | |
| GGAAATGTTGTATGTGTGAC+TGG | + | Chr3:298736-298755 | MsG0380011491.01.T01:CDS | 40.0% | |
| GGACTTGGCACATTTATACT+TGG | - | Chr3:301096-301115 | None:intergenic | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | + | Chr3:299634-299653 | MsG0380011491.01.T01:CDS | 40.0% | |
| GTCCTTGACATCATGATAGA+AGG | - | Chr3:299258-299277 | None:intergenic | 40.0% | |
| GTGTCTCCATGTTTAGTTGA+TGG | + | Chr3:301443-301462 | MsG0380011491.01.T01:three_prime_UTR | 40.0% | |
| TCCCTTCTATCATGATGTCA+AGG | + | Chr3:299253-299272 | MsG0380011491.01.T01:CDS | 40.0% | |
| TCTGTTGTTCAAGGTTGTCA+TGG | + | Chr3:299212-299231 | MsG0380011491.01.T01:CDS | 40.0% | |
| TGAAACCATGTGTTACGTAC+TGG | - | Chr3:300880-300899 | None:intergenic | 40.0% | |
| TGATTGATCCTGCTCTCAAA+GGG | + | Chr3:299291-299310 | MsG0380011491.01.T01:CDS | 40.0% | |
| TGCATTCACCAAACCTCTAT+GGG | - | Chr3:300572-300591 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | + | Chr3:300000-300019 | MsG0380011491.01.T01:CDS | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | + | Chr3:299642-299661 | MsG0380011491.01.T01:CDS | 40.0% | |
| TTGATTGATCCTGCTCTCAA+AGG | + | Chr3:299290-299309 | MsG0380011491.01.T01:CDS | 40.0% | |
| TTGCATTCACCAAACCTCTA+TGG | - | Chr3:300573-300592 | None:intergenic | 40.0% | |
| ! | CAAGCTTTTCGCCTTTTCTT+TGG | - | Chr3:301339-301358 | None:intergenic | 40.0% |
| ! | CCTATTGATTGTTTCAGCTG+TGG | + | Chr3:299543-299562 | MsG0380011491.01.T01:intron | 40.0% |
| !! | CCATGTTTAGTTGATGGACA+TGG | + | Chr3:301449-301468 | MsG0380011491.01.T01:three_prime_UTR | 40.0% |
| !! | GGTTTGGTTTGTACTCTTGA+TGG | + | Chr3:301570-301589 | MsG0380011491.01.T01:three_prime_UTR | 40.0% |
| !!! | TATGTGTCCTGTTTTGGTGT+TGG | + | Chr3:299023-299042 | MsG0380011491.01.T01:intron | 40.0% |
| AACCAAGTGGTCAACCTTCT+TGG | - | Chr3:299123-299142 | None:intergenic | 45.0% | |
| ACAACAACATCAGGAGTTCG+AGG | - | Chr3:299410-299429 | None:intergenic | 45.0% | |
| ACCAAGTGGTCAACCTTCTT+GGG | - | Chr3:299122-299141 | None:intergenic | 45.0% | |
| ACCTTCTTGGGATCATCTAC+AGG | - | Chr3:299110-299129 | None:intergenic | 45.0% | |
| CAATGAAGCAATTGGGGGAA+AGG | - | Chr3:299811-299830 | None:intergenic | 45.0% | |
| CACACTACTCAGAAGTTGTG+AGG | + | Chr3:300074-300093 | MsG0380011491.01.T01:CDS | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | - | Chr3:299136-299155 | None:intergenic | 45.0% | |
| CATTCTCGTACGCCAGAATA+TGG | - | Chr3:300015-300034 | None:intergenic | 45.0% | |
| CGTAACACATGGTTTCACTG+AGG | + | Chr3:300883-300902 | MsG0380011491.01.T01:intron | 45.0% | |
| GACAAGACGTTTGAGTGATG+GGG | - | Chr3:299348-299367 | None:intergenic | 45.0% | |
| GACCACTTGGTTAAGCTTGA+AGG | + | Chr3:299131-299150 | MsG0380011491.01.T01:CDS | 45.0% | |
| GCATTCACCAAACCTCTATG+GGG | - | Chr3:300571-300590 | None:intergenic | 45.0% | |
| GCCGTATGTGCCTATATATC+AGG | + | Chr3:301310-301329 | MsG0380011491.01.T01:CDS | 45.0% | |
| GGAGAGATTGCAACTGTTCA+AGG | + | Chr3:299160-299179 | MsG0380011491.01.T01:CDS | 45.0% | |
| GGATCAATCAATTCAGCCTG+AGG | - | Chr3:299281-299300 | None:intergenic | 45.0% | |
| GGGACTTGAGTATACTCCTT+TGG | + | Chr3:301358-301377 | MsG0380011491.01.T01:CDS | 45.0% | |
| GTCCGATTGCTTCTTAATCG+TGG | + | Chr3:298787-298806 | MsG0380011491.01.T01:CDS | 45.0% | |
| GTCTCATCGACAACAACATC+AGG | - | Chr3:299419-299438 | None:intergenic | 45.0% | |
| TACCATACGAAGCACAGACA+CGG | - | Chr3:299058-299077 | None:intergenic | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | + | Chr3:300025-300044 | MsG0380011491.01.T01:CDS | 45.0% | |
| TCAATCTGACATCCCCATAG+AGG | + | Chr3:300556-300575 | MsG0380011491.01.T01:intron | 45.0% | |
| TCCTTGATGCTCACTTCCAA+AGG | - | Chr3:301377-301396 | None:intergenic | 45.0% | |
| TCGAAAGGTGATCAAGTCTG+AGG | - | Chr3:300774-300793 | None:intergenic | 45.0% | |
| TGTGACTGAGCACATCTATG+TGG | + | Chr3:300708-300727 | MsG0380011491.01.T01:intron | 45.0% | |
| TGTGTGTGCCTCTCAAAACA+CGG | + | Chr3:299479-299498 | MsG0380011491.01.T01:intron | 45.0% | |
| TTGCAGCAGCACTTGTGTTT+AGG | - | Chr3:299685-299704 | None:intergenic | 45.0% | |
| ! | CTTCAGGTTACATCGCTTCA+TGG | + | Chr3:298761-298780 | MsG0380011491.01.T01:CDS | 45.0% |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | + | Chr3:301373-301392 | MsG0380011491.01.T01:CDS | 45.0% |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | + | Chr3:299139-299158 | MsG0380011491.01.T01:CDS | 45.0% |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | - | Chr3:299668-299687 | None:intergenic | 45.0% |
| !! | AAATAATAATTATTATTGAT+TGG | - | Chr3:298911-298930 | None:intergenic | 5.0% |
| AATACTTGGATCGCGAACGG+TGG | - | Chr3:298827-298846 | None:intergenic | 50.0% | |
| CTGACATCCCCATAGAGGTT+TGG | + | Chr3:300561-300580 | MsG0380011491.01.T01:intron | 50.0% | |
| GCCTGTAGATGATCCCAAGA+AGG | + | Chr3:299106-299125 | MsG0380011491.01.T01:intron | 50.0% | |
| GGTGATCAAGTCTGAGGAAC+AGG | - | Chr3:300768-300787 | None:intergenic | 50.0% | |
| TCATGATGTCAAGGACCCTC+AGG | + | Chr3:299262-299281 | MsG0380011491.01.T01:CDS | 50.0% | |
| TCCCAAGAAGGTTGACCACT+TGG | + | Chr3:299118-299137 | MsG0380011491.01.T01:CDS | 50.0% | |
| TGAATGAGACACCAGACACC+CGG | + | Chr3:298970-298989 | MsG0380011491.01.T01:intron | 50.0% | |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | + | Chr3:299582-299601 | MsG0380011491.01.T01:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | - | Chr3:299680-299699 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | - | Chr3:300117-300136 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | - | Chr3:300118-300137 | None:intergenic | 50.0% |
| ! | TTGAGAGTCCCTTTGAGAGC+AGG | - | Chr3:299302-299321 | None:intergenic | 50.0% |
| AGAGGCCCTATGACCATTGC+TGG | - | Chr3:299650-299669 | None:intergenic | 55.0% | |
| CGGCTTATCATCCGCACATC+TGG | - | Chr3:301294-301313 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | - | Chr3:299649-299668 | None:intergenic | 55.0% | |
| GGACCCCAGTACGTAACACA+TGG | + | Chr3:300872-300891 | MsG0380011491.01.T01:intron | 55.0% | |
| GTATGTGTGACTGGCGCTTC+AGG | + | Chr3:298745-298764 | MsG0380011491.01.T01:CDS | 55.0% | |
| GTCCGTGTCTGTGCTTCGTA+TGG | + | Chr3:299053-299072 | MsG0380011491.01.T01:intron | 55.0% | |
| TGTTACGTACTGGGGTCCAG+AGG | - | Chr3:300870-300889 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 298690 | 301629 | 298690 | ID=MsG0380011491.01;Name=MsG0380011491.01 |
| Chr3 | mRNA | 298690 | 301629 | 298690 | ID=MsG0380011491.01.T01;Parent=MsG0380011491.01;Name=MsG0380011491.01.T01;_AED=0.50;_eAED=0.50;_QI=31|1|1|1|1|1|5|190|325 |
| Chr3 | exon | 301295 | 301629 | 301295 | ID=MsG0380011491.01.T01:exon:46;Parent=MsG0380011491.01.T01 |
| Chr3 | exon | 299951 | 300137 | 299951 | ID=MsG0380011491.01.T01:exon:45;Parent=MsG0380011491.01.T01 |
| Chr3 | exon | 299560 | 299722 | 299560 | ID=MsG0380011491.01.T01:exon:44;Parent=MsG0380011491.01.T01 |
| Chr3 | exon | 299114 | 299475 | 299114 | ID=MsG0380011491.01.T01:exon:43;Parent=MsG0380011491.01.T01 |
| Chr3 | exon | 298690 | 298841 | 298690 | ID=MsG0380011491.01.T01:exon:42;Parent=MsG0380011491.01.T01 |
| Chr3 | five_prime_UTR | 298690 | 298720 | 298690 | ID=MsG0380011491.01.T01:five_prime_utr;Parent=MsG0380011491.01.T01 |
| Chr3 | CDS | 298721 | 298841 | 298721 | ID=MsG0380011491.01.T01:cds;Parent=MsG0380011491.01.T01 |
| Chr3 | CDS | 299114 | 299475 | 299114 | ID=MsG0380011491.01.T01:cds;Parent=MsG0380011491.01.T01 |
| Chr3 | CDS | 299560 | 299722 | 299560 | ID=MsG0380011491.01.T01:cds;Parent=MsG0380011491.01.T01 |
| Chr3 | CDS | 299951 | 300137 | 299951 | ID=MsG0380011491.01.T01:cds;Parent=MsG0380011491.01.T01 |
| Chr3 | CDS | 301295 | 301439 | 301295 | ID=MsG0380011491.01.T01:cds;Parent=MsG0380011491.01.T01 |
| Chr3 | three_prime_UTR | 301440 | 301629 | 301440 | ID=MsG0380011491.01.T01:three_prime_utr;Parent=MsG0380011491.01.T01 |
| Gene Sequence |
| Protein sequence |
