AlfalfaGEDB | MsG0380011706.01

M. sativa cultivar ZhongmuNo.1 / MsG0380011706.01

KEGG: K13342
GO: GO:0005515
PFAM: PF00515

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011706.01.T01	KYP49945.1	68.687	495	101	8	1	455	175	655	0	623
MsG0380011706.01.T02	KYP49945.1	68.687	495	101	8	1	455	175	655	0	623
MsG0380011706.01.T03	XP_003598272.2	97.59	83	1	1	1	83	1	82	5.26E-43	159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011706.01.T01	Q9FMA3	52.26	553	148	11	1	455	176	710	1.31E-173	508
MsG0380011706.01.T02	Q9FMA3	52.26	553	148	11	1	455	176	710	1.31E-173	508
MsG0380011706.01.T03	Q9FMA3	57.647	85	32	2	1	83	1	83	1.32E-21	90.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011706.01.T01	A0A445KGS9	63.158	551	93	8	1	455	174	710	0.0	627
MsG0380011706.01.T02	A0A445KGS9	63.158	551	93	8	1	455	174	710	0.0	627
MsG0380011706.01.T03	G7J0B8	97.590	83	1	1	1	83	1	82	2.51e-43	159

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0380011706.01	MsG0480023339.01	PPI
MsG0380011706.01	MsG0480023339.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011706.01.T01	MTR_3g009230	96.500	200	6	1	1	200	180	378	2.23e-133	403
MsG0380011706.01.T01	MTR_3g009230	53.555	422	105	10	79	455	350	725	5.40e-118	363
MsG0380011706.01.T02	MTR_3g009230	96.500	200	6	1	1	200	180	378	2.23e-133	403
MsG0380011706.01.T02	MTR_3g009230	53.555	422	105	10	79	455	350	725	5.40e-118	363
MsG0380011706.01.T03	MTR_3g009230	97.590	83	1	1	1	83	1	82	6.37e-47	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011706.01.T01	AT5G56290	52.260	553	148	11	1	455	176	710	1.34e-174	508
MsG0380011706.01.T02	AT5G56290	52.260	553	148	11	1	455	176	710	1.34e-174	508
MsG0380011706.01.T03	AT5G56290	57.647	85	32	2	1	83	1	83	1.35e-22	90.5

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Find 51 sgRNAs with CRISPR-Local

Find 819 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCAAAATTCCTCTA+CGG	0.591656	3:-3872990	MsG0380011706.01.T01:three_prime_UTR
AAGAGGTTGAGAGTAAAATT+GGG	0.500352	3:+3885751	None:intergenic
AAGCTTCCACATGTCATTCC+TGG	0.396030	3:+3875036	None:intergenic
AATACTTGAGTATTGTAATG+TGG	0.667768	3:-3874668	MsG0380011706.01.T01:three_prime_UTR
ACAGACACACGGTGAGAGGA+AGG	0.563009	3:-3886171	MsG0380011706.01.T01:five_prime_UTR
ACGAAATCTGTGAGCTTTAG+TGG	0.374026	3:+3874864	None:intergenic
AGAATTGAATTGAATTGAAA+TGG	0.309800	3:+3886064	None:intergenic
AGCACAAAACTTATTGTAGA+GGG	0.592967	3:+3874976	None:intergenic
AGCTTGTGATAGTCGTAATT+TGG	0.252542	3:-3875018	MsG0380011706.01.T01:CDS
AGGAAGATGATGAAGCAGAA+GGG	0.596421	3:+3885956	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCCAAAATTCCTCTA+CGG	-	Chr3:3886238-3886257	MsG0380011706.01.T01:five_prime_UTR	30.0%
AAAGAAAGTTGTGTGATGAA+CGG	-	Chr3:3876016-3876035	MsG0380011706.01.T01:intron	30.0%
AAATAGAAAGACAGATGTGT+TGG	-	Chr3:3885745-3885764	MsG0380011706.01.T01:five_prime_UTR	30.0%
AAATTCTGCATTTCCTTACA+GGG	-	Chr3:3883936-3883955	MsG0380011706.01.T01:CDS	30.0%
AACAAAAGTCTTCTTTCAGT+AGG	+	Chr3:3883338-3883357	None:intergenic	30.0%
AACATATCTTGGATAAACCA+AGG	-	Chr3:3880724-3880743	MsG0380011706.01.T01:intron	30.0%
AAGAGAGATGTTACTATGTT+AGG	-	Chr3:3882839-3882858	MsG0380011706.01.T01:intron	30.0%
AAGAGGTTGAGAGTAAAATT+GGG	+	Chr3:3873480-3873499	None:intergenic	30.0%
AAGTGTTTGGAAGACTAAAA+GGG	-	Chr3:3883851-3883870	MsG0380011706.01.T01:CDS	30.0%
AATATTAAGCAACTGCATGT+TGG	-	Chr3:3882299-3882318	MsG0380011706.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	3872989	3886261	3872989	ID=MsG0380011706.01;Name=MsG0380011706.01
Chr3	mRNA	3872989	3886261	3872989	ID=MsG0380011706.01.T01;Parent=MsG0380011706.01;Name=MsG0380011706.01.T01;_AED=0.47;_eAED=0.49;_QI=1740\|0.61\|0.57\|1\|0.61\|0.71\|14\|367\|480
Chr3	exon	3872989	3873023	3872989	ID=MsG0380011706.01.T01:exon:1990;Parent=MsG0380011706.01.T01
Chr3	exon	3874635	3875066	3874635	ID=MsG0380011706.01.T01:exon:1989;Parent=MsG0380011706.01.T01
Chr3	five_prime_UTR	3884665	3886261	3884665	ID=MsG0380011706.01.T01:five_prime_utr;Parent=MsG0380011706.01.T01
Chr3	five_prime_UTR	3884232	3884374	3884232	ID=MsG0380011706.01.T01:five_prime_utr;Parent=MsG0380011706.01.T01
Chr3	CDS	3884181	3884231	3884181	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3883760	3884011	3883760	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3882729	3882848	3882729	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3881582	3881824	3881582	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3880092	3880251	3880092	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3879421	3879506	3879421	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3878949	3879056	3878949	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3877359	3877418	3877359	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3877195	3877296	3877195	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3875551	3875616	3875551	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3875199	3875293	3875199	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	CDS	3874967	3875066	3874967	ID=MsG0380011706.01.T01:cds;Parent=MsG0380011706.01.T01
Chr3	three_prime_UTR	3874635	3874966	3874635	ID=MsG0380011706.01.T01:three_prime_utr;Parent=MsG0380011706.01.T01
Chr3	three_prime_UTR	3872989	3873023	3872989	ID=MsG0380011706.01.T01:three_prime_utr;Parent=MsG0380011706.01.T01
Chr3	mRNA	3874508	3886261	3874508	ID=MsG0380011706.01.T02;Parent=MsG0380011706.01;Name=MsG0380011706.01.T02;_AED=0.47;_eAED=0.49;_QI=1740\|0.58\|0.53\|1\|0.66\|0.76\|13\|459\|480
Chr3	exon	3874508	3875066	3874508	ID=MsG0380011706.01.T02:exon:1991;Parent=MsG0380011706.01.T02
Chr3	five_prime_UTR	3884665	3886261	3884665	ID=MsG0380011706.01.T02:five_prime_utr;Parent=MsG0380011706.01.T02
Chr3	five_prime_UTR	3884232	3884374	3884232	ID=MsG0380011706.01.T02:five_prime_utr;Parent=MsG0380011706.01.T02
Chr3	CDS	3884181	3884231	3884181	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3883760	3884011	3883760	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3882729	3882848	3882729	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3881582	3881824	3881582	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3880092	3880251	3880092	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3879421	3879506	3879421	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3878949	3879056	3878949	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3877359	3877418	3877359	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3877195	3877296	3877195	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3875551	3875616	3875551	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3875199	3875293	3875199	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	CDS	3874967	3875066	3874967	ID=MsG0380011706.01.T02:cds;Parent=MsG0380011706.01.T02
Chr3	three_prime_UTR	3874508	3874966	3874508	ID=MsG0380011706.01.T02:three_prime_utr;Parent=MsG0380011706.01.T02
Chr3	mRNA	3885673	3886230	3885673	ID=MsG0380011706.01.T03;Parent=MsG0380011706.01;Name=MsG0380011706.01.T03;_AED=0.50;_eAED=0.52;_QI=208\|1\|0.5\|1\|1\|1\|2\|0\|90
Chr3	exon	3885673	3885819	3885673	ID=MsG0380011706.01.T03:exon:1993;Parent=MsG0380011706.01.T03
Chr3	exon	3885897	3886230	3885897	ID=MsG0380011706.01.T03:exon:1992;Parent=MsG0380011706.01.T03
Chr3	five_prime_UTR	3886023	3886230	3886023	ID=MsG0380011706.01.T03:five_prime_utr;Parent=MsG0380011706.01.T03
Chr3	CDS	3885897	3886022	3885897	ID=MsG0380011706.01.T03:cds;Parent=MsG0380011706.01.T03
Chr3	CDS	3885673	3885819	3885673	ID=MsG0380011706.01.T03:cds;Parent=MsG0380011706.01.T03

Gene Sequence

>MsG0380011706.01.T02

ATGGCCAGGCATCTCTTTGCAGATAAAAGTGAAGAATTTATCCATGCCCAAGTAAATGCTCTTCTGTCCTCTCTAGATATTGACAGCAATGTCCGTGGCAAGGGACCTATGCCTGAAAGACACAGGGAGCTTGAAGATTATTGGAATGAGTCTCAAGGCAACCTGATACATGGTGCTCATGCTTCAGACGGATGGATTACCGAATTCAGTCAAAATAGGGAAAGATATGATAATCCCGATGCATGGGCTACTTCGTTTGAGCAACAGCATGGTGCAAATGGCTGGGCCTCTGAATTTGAACATTCTCAATTGTCATCAGTAGATCAAATGCGAGGTATTGTGAACATGTCGAACATTGCTACAATAGAGCAGACTCGTATGCTTGCCAATACATTGGCCCAAAATGCTGACCCTAAATTTCAGAACTCGAAGTTCCTTCAATTTGTATCAAAGATGAGCCGTGGTGAGTTGATTATCGATGACAATCAAGTTAAAGAGTCTGCATTACCCGCACCTGGAGATTGGGCAACAGAATACCAGCAGCAGTATAATCATGGTGATGCATGGGCTGGTGAATTCTTAAATAATAAGGCATCTCCAATAAGCAGGAAACAACATTCATTTGTCAACTTTTTATCGAGTATTGATGGCTTATCTTCAGTTAAAGAAAGGGCTTTAAGTGAAGCAGTTCTAGCACTAGAAGCCGAAGTCTTGAAAAACCCTGAAAATTCCGAAGGATGGAGACTACTCGGAATAGCACATGCAGAAAATGACGATGATCAACAGGTTAGGTTATGCTTTCTTGTTGATAAACTCCCCTATTTGTGCATTGCAGCGATGATGCGTGCACAAGAGGCTGATCCAACAACTTGGAGGTGCTTCTTGCTCTGGTGTCAGTCATACAAATGGTCAAACTGGAGCAAATGCTGCTTTGAAGTATCTATTTGGATGGCTACGGATCACCCAAAATACGGAACGATTGCCCCACCTGAGATGTCTGATTCTTTGTACTATGCTGATGTTGCTAGATTATTCAACGACGCAGCTGTAATCTCACCTGATGATGCAGATGTTCACATAGCATTGAAGCTTAAGCCACAAGATTACTCTCTCTGGAACAAGCTTGGTGCAACACAAGCAAACAGTGTTCAAAGTGCTGATGCAATAGCGGCTTATCAACAGGCGCTAGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGTATCAGTTATGCAAACCAGGGCATGTATGACGAGTCTATTCGTTATTATGTTCGAGCGCTTGCAATGAATCCAAAAGCAGAGAATGCATGGCAGTATTTGAGAATTTCGTTGAGTTGTGCTTCCAGGAATGACATGTGGAAGCTTGTGATAGTCGTAATTTGGACCTTCTCCAGAAGGAGTTCCCTCTACAATAAGTTTTGTGCTAGTGGGTGA

>MsG0380011706.01.T01

>MsG0380011706.01.T03

ATGGCGATGCGTGATCTTATAACGGGTGCTACTTCTTGCCCTGACCCTTCTGCTTCATCATCTTCCTCTCAAAACCCTCTCGGTTCTCTCGCTAATGCTCTCCTCGGTTCTTCCTCCAAAAATCAGGAGAGGTTGAAGGAAATTCCTACATCAACATCTACTCCTTCTGCATCCCAATTTTACTCTCAACCTCTTACTCAGCTTCCTGGTTCTGAATTCGATAAACCTTTTCTCGATGCTAATTCTCAGGTGAGGATTAAAACAATTAATTAA

Protein sequence

>MsG0380011706.01.T02

MARHLFADKSEEFIHAQVNALLSSLDIDSNVRGKGPMPERHRELEDYWNESQGNLIHGAHASDGWITEFSQNRERYDNPDAWATSFEQQHGANGWASEFEHSQLSSVDQMRGIVNMSNIATIEQTRMLANTLAQNADPKFQNSKFLQFVSKMSRGELIIDDNQVKESALPAPGDWATEYQQQYNHGDAWAGEFLNNKASPISRKQHSFVNFLSSIDGLSSVKERALSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQVRLCFLVDKLPYLCIAAMMRAQEADPTTWRCFLLWCQSYKWSNWSKCCFEVSIWMATDHPKYGTIAPPEMSDSLYYADVARLFNDAAVISPDDADVHIALKLKPQDYSLWNKLGATQANSVQSADAIAAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKAENAWQYLRISLSCASRNDMWKLVIVVIWTFSRRSSLYNKFCASG*

>MsG0380011706.01.T01

>MsG0380011706.01.T03

MAMRDLITGATSCPDPSASSSSSQNPLGSLANALLGSSSKNQERLKEIPTSTSTPSASQFYSQPLTQLPGSEFDKPFLDANSQVRIKTIN*