Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380011814.01.T02 | XP_003598343.1 | 67.391 | 92 | 24 | 2 | 1 | 92 | 275 | 360 | 9.13E-31 | 121 |
MsG0380011814.01.T01 | XP_003598343.1 | 68.182 | 88 | 20 | 2 | 1 | 82 | 275 | 360 | 2.41E-28 | 114 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380011814.01.T01 | G7IVF6 | 68.182 | 88 | 20 | 2 | 1 | 82 | 275 | 360 | 1.15e-28 | 114 |
MsG0380011814.01.T02 | G7IVF6 | 67.391 | 92 | 24 | 2 | 1 | 92 | 275 | 360 | 4.36e-31 | 121 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0380011814.01 | MsG0380016475.01 | 0.810884 | 9.230740e-51 | 5.631157e-48 |
MsG0380011814.01 | MsG0580027745.01 | 0.803985 | 2.683590e-49 | 1.367731e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380011814.01.T02 | MTR_3g010520 | 67.391 | 92 | 24 | 2 | 1 | 92 | 275 | 360 | 1.11e-34 | 121 |
MsG0380011814.01.T02 | MTR_3g023930 | 66.304 | 92 | 25 | 2 | 1 | 92 | 283 | 368 | 3.16e-34 | 120 |
MsG0380011814.01.T02 | MTR_3g010970 | 69.565 | 92 | 24 | 3 | 1 | 92 | 305 | 392 | 4.89e-33 | 117 |
MsG0380011814.01.T02 | MTR_3g010620 | 66.346 | 104 | 23 | 4 | 1 | 92 | 290 | 393 | 7.86e-33 | 117 |
MsG0380011814.01.T02 | MTR_3g030250 | 66.304 | 92 | 25 | 2 | 1 | 92 | 295 | 380 | 2.41e-32 | 115 |
MsG0380011814.01.T02 | MTR_3g010920 | 69.565 | 92 | 24 | 2 | 1 | 92 | 295 | 382 | 2.62e-32 | 115 |
MsG0380011814.01.T02 | MTR_3g023940 | 65.217 | 92 | 20 | 2 | 1 | 92 | 305 | 384 | 2.05e-31 | 113 |
MsG0380011814.01.T02 | MTR_3g010880 | 61.957 | 92 | 29 | 2 | 1 | 92 | 256 | 341 | 3.10e-31 | 112 |
MsG0380011814.01.T02 | MTR_3g010870 | 61.957 | 92 | 29 | 2 | 1 | 92 | 232 | 317 | 5.15e-30 | 108 |
MsG0380011814.01.T02 | MTR_3g030240 | 63.441 | 93 | 26 | 3 | 1 | 92 | 293 | 378 | 1.11e-29 | 108 |
MsG0380011814.01.T02 | MTR_3g010590 | 62.500 | 96 | 28 | 2 | 1 | 92 | 295 | 386 | 1.25e-29 | 108 |
MsG0380011814.01.T02 | MTR_3g010870 | 61.957 | 92 | 29 | 2 | 1 | 92 | 300 | 385 | 1.44e-29 | 108 |
MsG0380011814.01.T02 | MTR_3g006500 | 60.870 | 92 | 30 | 2 | 1 | 92 | 285 | 370 | 3.46e-29 | 107 |
MsG0380011814.01.T02 | MTR_0044s0300 | 54.348 | 92 | 37 | 2 | 1 | 92 | 304 | 390 | 1.86e-24 | 94.7 |
MsG0380011814.01.T02 | MTR_3g024150 | 59.140 | 93 | 30 | 3 | 1 | 92 | 301 | 386 | 3.19e-24 | 94.4 |
MsG0380011814.01.T02 | MTR_3g006550 | 52.688 | 93 | 37 | 3 | 1 | 92 | 52 | 138 | 5.44e-23 | 86.3 |
MsG0380011814.01.T02 | MTR_6g065980 | 55.319 | 94 | 35 | 3 | 1 | 92 | 271 | 359 | 1.36e-22 | 89.4 |
MsG0380011814.01.T02 | MTR_3g030330 | 53.125 | 96 | 37 | 4 | 1 | 92 | 281 | 372 | 5.67e-22 | 87.8 |
MsG0380011814.01.T02 | MTR_2g078870 | 50.000 | 92 | 42 | 1 | 1 | 92 | 221 | 308 | 1.53e-20 | 83.6 |
MsG0380011814.01.T02 | MTR_3g036430 | 48.913 | 92 | 41 | 2 | 1 | 92 | 258 | 343 | 1.74e-19 | 80.9 |
MsG0380011814.01.T02 | MTR_1g113900 | 48.913 | 92 | 40 | 2 | 1 | 92 | 162 | 246 | 1.83e-19 | 79.7 |
MsG0380011814.01.T02 | MTR_3g010430 | 50.526 | 95 | 36 | 3 | 1 | 92 | 307 | 393 | 1.97e-19 | 81.3 |
MsG0380011814.01.T02 | MTR_2g078850 | 56.000 | 75 | 28 | 2 | 1 | 75 | 298 | 367 | 3.78e-19 | 80.1 |
MsG0380011814.01.T02 | MTR_3g006570 | 49.474 | 95 | 38 | 3 | 1 | 92 | 290 | 377 | 5.58e-19 | 79.7 |
MsG0380011814.01.T02 | MTR_3g024110 | 46.739 | 92 | 44 | 2 | 1 | 92 | 362 | 448 | 1.83e-18 | 78.6 |
MsG0380011814.01.T02 | MTR_3g030320 | 51.064 | 94 | 38 | 4 | 1 | 92 | 212 | 299 | 8.25e-18 | 75.9 |
MsG0380011814.01.T02 | MTR_1g115160 | 47.368 | 95 | 38 | 4 | 1 | 92 | 282 | 367 | 4.36e-17 | 74.3 |
MsG0380011814.01.T02 | MTR_2g021190 | 45.652 | 92 | 39 | 2 | 1 | 92 | 293 | 373 | 1.09e-16 | 73.6 |
MsG0380011814.01.T02 | MTR_3g083660 | 46.667 | 90 | 41 | 3 | 1 | 89 | 195 | 278 | 2.03e-16 | 72.0 |
MsG0380011814.01.T02 | MTR_3g013770 | 46.739 | 92 | 38 | 4 | 1 | 92 | 308 | 388 | 1.06e-15 | 70.9 |
MsG0380011814.01.T02 | MTR_4g055040 | 45.679 | 81 | 37 | 2 | 1 | 80 | 1 | 75 | 4.01e-15 | 64.3 |
MsG0380011814.01.T02 | MTR_8g062660 | 45.652 | 92 | 40 | 3 | 1 | 92 | 300 | 381 | 4.70e-15 | 68.9 |
MsG0380011814.01.T02 | MTR_2g029990 | 42.391 | 92 | 42 | 2 | 1 | 92 | 323 | 403 | 9.28e-15 | 68.2 |
MsG0380011814.01.T02 | MTR_0760s0010 | 47.312 | 93 | 39 | 3 | 1 | 92 | 307 | 390 | 1.06e-14 | 67.8 |
MsG0380011814.01.T02 | MTR_1004s0010 | 47.312 | 93 | 39 | 3 | 1 | 92 | 277 | 360 | 1.47e-14 | 67.4 |
MsG0380011814.01.T02 | MTR_5g046300 | 45.652 | 92 | 42 | 2 | 1 | 92 | 268 | 351 | 1.99e-14 | 67.0 |
MsG0380011814.01.T02 | MTR_5g046290 | 45.652 | 92 | 42 | 2 | 1 | 92 | 268 | 351 | 1.99e-14 | 67.0 |
MsG0380011814.01.T02 | MTR_3g036290 | 43.478 | 92 | 40 | 2 | 1 | 92 | 278 | 357 | 3.28e-14 | 66.6 |
MsG0380011814.01.T02 | MTR_3g096280 | 44.565 | 92 | 46 | 2 | 1 | 92 | 257 | 343 | 3.69e-14 | 66.2 |
MsG0380011814.01.T02 | MTR_3g010390 | 41.304 | 92 | 41 | 2 | 1 | 92 | 320 | 398 | 4.14e-14 | 66.2 |
MsG0380011814.01.T02 | MTR_1g115185 | 44.330 | 97 | 42 | 4 | 1 | 92 | 311 | 400 | 4.16e-14 | 66.2 |
MsG0380011814.01.T02 | MTR_3g096250 | 43.478 | 92 | 31 | 3 | 1 | 92 | 276 | 346 | 4.77e-14 | 65.9 |
MsG0380011814.01.T02 | MTR_3g083640 | 42.553 | 94 | 43 | 3 | 1 | 92 | 319 | 403 | 5.42e-14 | 65.9 |
MsG0380011814.01.T02 | MTR_5g046280 | 44.565 | 92 | 43 | 2 | 1 | 92 | 171 | 254 | 8.05e-14 | 64.7 |
MsG0380011814.01.T02 | MTR_4g055060 | 42.391 | 92 | 43 | 2 | 1 | 92 | 306 | 387 | 8.69e-14 | 65.5 |
MsG0380011814.01.T02 | MTR_5g007610 | 44.565 | 92 | 40 | 2 | 1 | 92 | 321 | 401 | 9.67e-14 | 65.1 |
MsG0380011814.01.T02 | MTR_6g014720 | 44.898 | 98 | 41 | 3 | 1 | 92 | 285 | 375 | 1.23e-13 | 64.7 |
MsG0380011814.01.T02 | MTR_6g013270 | 44.898 | 98 | 41 | 3 | 1 | 92 | 303 | 393 | 1.43e-13 | 64.7 |
MsG0380011814.01.T02 | MTR_1g114700 | 40.625 | 96 | 44 | 3 | 1 | 92 | 302 | 388 | 2.08e-13 | 64.3 |
MsG0380011814.01.T02 | MTR_2g021210 | 42.391 | 92 | 42 | 2 | 1 | 92 | 345 | 425 | 2.49e-13 | 63.9 |
MsG0380011814.01.T02 | MTR_5g026830 | 41.304 | 92 | 43 | 4 | 1 | 92 | 201 | 281 | 2.94e-13 | 63.5 |
MsG0380011814.01.T02 | MTR_6g053240 | 35.870 | 92 | 59 | 0 | 1 | 92 | 305 | 396 | 5.97e-13 | 63.2 |
MsG0380011814.01.T02 | MTR_3g014540 | 41.304 | 92 | 41 | 3 | 1 | 92 | 300 | 378 | 9.35e-13 | 62.4 |
MsG0380011814.01.T02 | MTR_3g030350 | 42.553 | 94 | 49 | 3 | 1 | 92 | 301 | 391 | 1.08e-12 | 62.4 |
MsG0380011814.01.T02 | MTR_6g053260 | 35.870 | 92 | 59 | 0 | 1 | 92 | 609 | 700 | 1.10e-12 | 62.4 |
MsG0380011814.01.T02 | MTR_1g115180 | 44.330 | 97 | 40 | 4 | 1 | 91 | 120 | 208 | 1.12e-12 | 61.2 |
MsG0380011814.01.T02 | MTR_3g006530 | 41.489 | 94 | 44 | 3 | 1 | 92 | 313 | 397 | 1.18e-12 | 62.0 |
MsG0380011814.01.T02 | MTR_3g036335 | 44.565 | 92 | 44 | 3 | 1 | 92 | 311 | 395 | 1.23e-12 | 62.0 |
MsG0380011814.01.T02 | MTR_1g114650 | 42.857 | 98 | 41 | 3 | 1 | 92 | 143 | 231 | 2.81e-12 | 60.5 |
MsG0380011814.01.T02 | MTR_3g011060 | 41.837 | 98 | 32 | 4 | 1 | 92 | 309 | 387 | 4.09e-12 | 60.5 |
MsG0380011814.01.T02 | MTR_3g024130 | 42.391 | 92 | 42 | 2 | 1 | 92 | 235 | 315 | 6.14e-12 | 60.1 |
MsG0380011814.01.T02 | MTR_2g021252 | 37.363 | 91 | 46 | 2 | 1 | 91 | 305 | 384 | 7.42e-12 | 59.7 |
MsG0380011814.01.T02 | MTR_2g021155 | 41.667 | 96 | 42 | 3 | 1 | 92 | 871 | 956 | 1.38e-11 | 59.3 |
MsG0380011814.01.T02 | MTR_3g014570 | 39.130 | 92 | 44 | 3 | 1 | 92 | 300 | 379 | 1.72e-11 | 58.9 |
MsG0380011814.01.T02 | MTR_7g498320 | 49.231 | 65 | 26 | 3 | 1 | 64 | 158 | 216 | 1.84e-11 | 58.2 |
MsG0380011814.01.T02 | MTR_2g078900 | 56.250 | 48 | 20 | 1 | 1 | 48 | 298 | 344 | 2.10e-11 | 58.5 |
MsG0380011814.01.T02 | MTR_6g048120 | 41.176 | 102 | 42 | 4 | 1 | 92 | 315 | 408 | 4.45e-11 | 57.8 |
MsG0380011814.01.T02 | MTR_8g054320 | 40.217 | 92 | 43 | 3 | 1 | 92 | 222 | 301 | 9.62e-11 | 56.6 |
MsG0380011814.01.T01 | MTR_3g010520 | 68.182 | 88 | 20 | 2 | 1 | 82 | 275 | 360 | 2.91e-32 | 114 |
MsG0380011814.01.T01 | MTR_3g023930 | 67.045 | 88 | 21 | 2 | 1 | 82 | 283 | 368 | 3.66e-32 | 114 |
MsG0380011814.01.T01 | MTR_3g030250 | 67.045 | 88 | 21 | 2 | 1 | 82 | 295 | 380 | 6.29e-32 | 114 |
MsG0380011814.01.T01 | MTR_3g010970 | 66.667 | 90 | 20 | 2 | 1 | 82 | 305 | 392 | 4.94e-31 | 112 |
MsG0380011814.01.T01 | MTR_3g023940 | 69.880 | 83 | 21 | 2 | 1 | 82 | 305 | 384 | 1.92e-30 | 110 |
MsG0380011814.01.T01 | MTR_3g010920 | 67.778 | 90 | 19 | 2 | 1 | 82 | 295 | 382 | 1.71e-29 | 107 |
MsG0380011814.01.T01 | MTR_3g030240 | 63.636 | 88 | 24 | 2 | 1 | 82 | 293 | 378 | 2.60e-29 | 107 |
MsG0380011814.01.T01 | MTR_3g010590 | 64.516 | 93 | 21 | 3 | 1 | 82 | 295 | 386 | 1.07e-28 | 105 |
MsG0380011814.01.T01 | MTR_3g006500 | 62.500 | 88 | 25 | 2 | 1 | 82 | 285 | 370 | 2.71e-28 | 104 |
MsG0380011814.01.T01 | MTR_3g010880 | 61.364 | 88 | 26 | 2 | 1 | 82 | 256 | 341 | 3.66e-28 | 103 |
MsG0380011814.01.T01 | MTR_3g010620 | 58.654 | 104 | 21 | 4 | 1 | 82 | 290 | 393 | 7.74e-27 | 100 |
MsG0380011814.01.T01 | MTR_3g010870 | 61.364 | 88 | 26 | 2 | 1 | 82 | 232 | 317 | 9.13e-27 | 99.8 |
MsG0380011814.01.T01 | MTR_3g010870 | 61.364 | 88 | 26 | 2 | 1 | 82 | 300 | 385 | 2.59e-26 | 99.4 |
MsG0380011814.01.T01 | MTR_3g024150 | 57.955 | 88 | 29 | 2 | 1 | 82 | 301 | 386 | 5.40e-24 | 93.2 |
MsG0380011814.01.T01 | MTR_0044s0300 | 55.682 | 88 | 32 | 2 | 1 | 82 | 304 | 390 | 6.82e-24 | 92.8 |
MsG0380011814.01.T01 | MTR_3g030330 | 57.609 | 92 | 29 | 4 | 1 | 82 | 281 | 372 | 2.73e-23 | 90.9 |
MsG0380011814.01.T01 | MTR_3g006550 | 53.933 | 89 | 32 | 3 | 1 | 82 | 52 | 138 | 3.51e-22 | 83.6 |
MsG0380011814.01.T01 | MTR_2g078870 | 52.273 | 88 | 36 | 1 | 1 | 82 | 221 | 308 | 6.67e-21 | 84.0 |
MsG0380011814.01.T01 | MTR_6g065980 | 55.556 | 90 | 31 | 3 | 1 | 82 | 271 | 359 | 9.96e-21 | 84.0 |
MsG0380011814.01.T01 | MTR_1g113900 | 53.488 | 86 | 35 | 2 | 1 | 82 | 162 | 246 | 1.83e-20 | 81.6 |
MsG0380011814.01.T01 | MTR_2g078850 | 59.155 | 71 | 22 | 2 | 1 | 65 | 298 | 367 | 6.71e-20 | 81.6 |
MsG0380011814.01.T01 | MTR_3g030320 | 54.545 | 88 | 34 | 3 | 1 | 82 | 212 | 299 | 1.13e-19 | 80.5 |
MsG0380011814.01.T01 | MTR_3g036430 | 52.874 | 87 | 35 | 3 | 1 | 82 | 258 | 343 | 1.48e-19 | 80.5 |
MsG0380011814.01.T01 | MTR_2g021190 | 50.000 | 82 | 40 | 1 | 1 | 82 | 293 | 373 | 3.23e-19 | 80.1 |
MsG0380011814.01.T01 | MTR_1g115160 | 47.778 | 90 | 35 | 3 | 1 | 82 | 282 | 367 | 1.03e-18 | 78.6 |
MsG0380011814.01.T01 | MTR_3g006570 | 50.000 | 92 | 32 | 3 | 1 | 82 | 290 | 377 | 1.55e-18 | 78.2 |
MsG0380011814.01.T01 | MTR_3g010430 | 50.549 | 91 | 32 | 3 | 1 | 82 | 307 | 393 | 1.83e-18 | 78.2 |
MsG0380011814.01.T01 | MTR_2g029990 | 47.561 | 82 | 42 | 1 | 1 | 82 | 323 | 403 | 1.31e-17 | 75.5 |
MsG0380011814.01.T01 | MTR_3g024110 | 46.591 | 88 | 40 | 2 | 1 | 82 | 362 | 448 | 2.42e-17 | 75.1 |
MsG0380011814.01.T01 | MTR_8g062660 | 48.837 | 86 | 36 | 3 | 1 | 82 | 300 | 381 | 9.01e-17 | 73.6 |
MsG0380011814.01.T01 | MTR_2g021210 | 47.561 | 82 | 42 | 1 | 1 | 82 | 345 | 425 | 2.30e-16 | 72.0 |
MsG0380011814.01.T01 | MTR_3g083660 | 48.235 | 85 | 37 | 2 | 1 | 79 | 195 | 278 | 5.81e-16 | 70.5 |
MsG0380011814.01.T01 | MTR_3g013770 | 46.512 | 86 | 37 | 3 | 1 | 82 | 308 | 388 | 9.58e-16 | 70.5 |
MsG0380011814.01.T01 | MTR_3g036290 | 47.619 | 84 | 38 | 2 | 1 | 82 | 278 | 357 | 2.19e-15 | 69.3 |
MsG0380011814.01.T01 | MTR_6g013270 | 48.913 | 92 | 36 | 3 | 1 | 82 | 303 | 393 | 2.28e-15 | 69.3 |
MsG0380011814.01.T01 | MTR_6g014720 | 48.913 | 92 | 36 | 3 | 1 | 82 | 285 | 375 | 2.29e-15 | 69.3 |
MsG0380011814.01.T01 | MTR_1g115185 | 47.253 | 91 | 38 | 4 | 1 | 82 | 311 | 400 | 1.15e-14 | 67.4 |
MsG0380011814.01.T01 | MTR_4g055040 | 48.000 | 75 | 34 | 2 | 1 | 70 | 1 | 75 | 1.26e-14 | 62.8 |
MsG0380011814.01.T01 | MTR_3g096250 | 46.341 | 82 | 33 | 2 | 1 | 82 | 276 | 346 | 1.28e-14 | 67.0 |
MsG0380011814.01.T01 | MTR_0760s0010 | 48.864 | 88 | 35 | 2 | 1 | 82 | 307 | 390 | 1.40e-14 | 67.0 |
MsG0380011814.01.T01 | MTR_1004s0010 | 48.864 | 88 | 35 | 2 | 1 | 82 | 277 | 360 | 1.66e-14 | 67.0 |
MsG0380011814.01.T01 | MTR_3g083640 | 45.349 | 86 | 42 | 3 | 1 | 82 | 319 | 403 | 1.70e-14 | 67.0 |
MsG0380011814.01.T01 | MTR_3g010390 | 44.048 | 84 | 40 | 2 | 1 | 82 | 320 | 398 | 1.90e-14 | 66.6 |
MsG0380011814.01.T01 | MTR_1g114650 | 46.739 | 92 | 36 | 3 | 1 | 82 | 143 | 231 | 3.18e-14 | 65.1 |
MsG0380011814.01.T01 | MTR_3g014540 | 42.857 | 84 | 41 | 2 | 1 | 82 | 300 | 378 | 7.42e-14 | 65.1 |
MsG0380011814.01.T01 | MTR_1g114700 | 43.333 | 90 | 40 | 3 | 1 | 82 | 302 | 388 | 7.96e-14 | 65.1 |
MsG0380011814.01.T01 | MTR_3g030310 | 42.424 | 99 | 38 | 3 | 1 | 82 | 295 | 391 | 8.73e-14 | 64.7 |
MsG0380011814.01.T01 | MTR_2g021155 | 45.349 | 86 | 43 | 1 | 1 | 82 | 871 | 956 | 1.04e-13 | 64.7 |
MsG0380011814.01.T01 | MTR_2g021155 | 40.741 | 81 | 46 | 1 | 1 | 79 | 306 | 386 | 3.24e-12 | 60.5 |
MsG0380011814.01.T01 | MTR_5g026830 | 41.860 | 86 | 41 | 3 | 1 | 82 | 201 | 281 | 1.41e-13 | 63.9 |
MsG0380011814.01.T01 | MTR_3g006530 | 42.697 | 89 | 40 | 3 | 1 | 82 | 313 | 397 | 1.45e-13 | 64.3 |
MsG0380011814.01.T01 | MTR_3g096280 | 45.455 | 88 | 41 | 2 | 1 | 82 | 257 | 343 | 2.03e-13 | 63.9 |
MsG0380011814.01.T01 | MTR_4g055060 | 44.186 | 86 | 40 | 2 | 1 | 82 | 306 | 387 | 4.18e-13 | 62.8 |
MsG0380011814.01.T01 | MTR_3g011060 | 43.333 | 90 | 32 | 3 | 1 | 82 | 309 | 387 | 5.29e-13 | 62.8 |
MsG0380011814.01.T01 | MTR_5g046300 | 47.126 | 87 | 38 | 3 | 1 | 82 | 268 | 351 | 5.64e-13 | 62.4 |
MsG0380011814.01.T01 | MTR_5g046290 | 47.126 | 87 | 38 | 3 | 1 | 82 | 268 | 351 | 5.64e-13 | 62.4 |
MsG0380011814.01.T01 | MTR_5g007610 | 45.349 | 86 | 38 | 2 | 1 | 82 | 321 | 401 | 6.03e-13 | 62.4 |
MsG0380011814.01.T01 | MTR_1g115180 | 47.253 | 91 | 36 | 4 | 1 | 81 | 120 | 208 | 7.54e-13 | 61.2 |
MsG0380011814.01.T01 | MTR_2g021252 | 40.741 | 81 | 47 | 1 | 1 | 81 | 305 | 384 | 8.05e-13 | 62.0 |
MsG0380011814.01.T01 | MTR_1g112930 | 44.318 | 88 | 41 | 3 | 1 | 81 | 289 | 375 | 8.30e-13 | 62.0 |
MsG0380011814.01.T01 | MTR_3g030350 | 42.391 | 92 | 42 | 3 | 1 | 82 | 301 | 391 | 8.57e-13 | 62.0 |
MsG0380011814.01.T01 | MTR_3g024130 | 44.186 | 86 | 39 | 2 | 1 | 82 | 235 | 315 | 1.16e-12 | 61.6 |
MsG0380011814.01.T01 | MTR_6g048120 | 45.745 | 94 | 39 | 4 | 1 | 82 | 315 | 408 | 1.22e-12 | 61.6 |
MsG0380011814.01.T01 | MTR_3g036335 | 44.828 | 87 | 41 | 3 | 1 | 82 | 311 | 395 | 1.28e-12 | 61.6 |
MsG0380011814.01.T01 | MTR_3g006640 | 43.820 | 89 | 41 | 3 | 1 | 81 | 205 | 292 | 2.06e-12 | 60.8 |
MsG0380011814.01.T01 | MTR_5g046280 | 45.977 | 87 | 39 | 3 | 1 | 82 | 171 | 254 | 2.67e-12 | 60.1 |
MsG0380011814.01.T01 | MTR_3g011020 | 39.080 | 87 | 43 | 2 | 1 | 82 | 290 | 371 | 3.36e-12 | 60.5 |
MsG0380011814.01.T01 | MTR_2g078900 | 64.286 | 42 | 14 | 1 | 1 | 42 | 298 | 338 | 5.09e-12 | 59.7 |
MsG0380011814.01.T01 | MTR_6g004210 | 40.426 | 94 | 44 | 3 | 1 | 82 | 323 | 416 | 5.26e-12 | 59.7 |
MsG0380011814.01.T01 | MTR_6g053240 | 35.870 | 92 | 49 | 1 | 1 | 82 | 305 | 396 | 1.03e-11 | 58.9 |
MsG0380011814.01.T01 | MTR_6g021880 | 42.857 | 84 | 44 | 3 | 1 | 82 | 301 | 382 | 1.04e-11 | 58.9 |
MsG0380011814.01.T01 | MTR_6g048140 | 38.043 | 92 | 47 | 3 | 1 | 82 | 312 | 403 | 1.04e-11 | 58.9 |
MsG0380011814.01.T01 | MTR_3g014570 | 41.176 | 85 | 42 | 3 | 1 | 82 | 300 | 379 | 1.13e-11 | 58.9 |
MsG0380011814.01.T01 | MTR_6g053260 | 35.870 | 92 | 49 | 1 | 1 | 82 | 609 | 700 | 2.63e-11 | 57.8 |
MsG0380011814.01.T01 | MTR_8g054320 | 41.176 | 85 | 42 | 3 | 1 | 82 | 222 | 301 | 5.67e-11 | 56.6 |
MsG0380011814.01.T01 | MTR_2g021150 | 37.805 | 82 | 50 | 1 | 1 | 82 | 289 | 369 | 6.81e-11 | 56.6 |
MsG0380011814.01.T01 | MTR_3g009310 | 38.372 | 86 | 44 | 2 | 1 | 82 | 311 | 391 | 8.71e-11 | 56.2 |
MsG0380011814.01.T01 | MTR_6g007135 | 43.678 | 87 | 43 | 4 | 1 | 82 | 305 | 390 | 9.05e-11 | 56.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 14 sgRNAs with CRISPR-Local
Find 14 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGTTTATGATTCCAAAAC+TGG | 0.307696 | 3:+5673028 | MsG0380011814.01.T02:CDS |
GTTTGGATTATGAAGGAGTA+TGG | 0.336027 | 3:+5672845 | None:intergenic |
ATACCCCGATCTTGCATGTT+AGG | 0.342953 | 3:-5672902 | None:intergenic |
AATATTCGAAGTGCCAGTTT+TGG | 0.345464 | 3:-5673041 | None:intergenic |
GGGGTATAGACGCACTATAT+TGG | 0.350148 | 3:+5672918 | MsG0380011814.01.T02:CDS |
GGGTATAGACGCACTATATT+GGG | 0.379334 | 3:+5672919 | MsG0380011814.01.T02:CDS |
TATTCCTAACATGCAAGATC+GGG | 0.425530 | 3:+5672898 | MsG0380011814.01.T02:CDS |
CTATTCCTAACATGCAAGAT+CGG | 0.476384 | 3:+5672897 | MsG0380011814.01.T02:CDS |
AGTATGGAAATCAAGAGTCT+TGG | 0.499464 | 3:+5672861 | MsG0380011814.01.T02:CDS |
TTCAGAGAATGACCAACTGT+TGG | 0.559157 | 3:+5672955 | MsG0380011814.01.T02:CDS |
GTTGGTGAAATGTTATCAGT+TGG | 0.566466 | 3:+5672973 | MsG0380011814.01.T02:CDS |
GATAACATTTCACCAACAGT+TGG | 0.573205 | 3:-5672967 | None:intergenic |
TATGACACACGATATCAAGT+TGG | 0.620696 | 3:+5673006 | MsG0380011814.01.T02:CDS |
ATTCCTAACATGCAAGATCG+GGG | 0.679926 | 3:+5672899 | MsG0380011814.01.T02:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATAGTTGTTTTGAAACTC+AGG | - | Chr3:5673067-5673086 | None:intergenic | 25.0% |
GTTGTTTATGATTCCAAAAC+TGG | + | Chr3:5673028-5673047 | MsG0380011814.01.T02:CDS | 30.0% | |
AGTATGGAAATCAAGAGTCT+TGG | + | Chr3:5672861-5672880 | MsG0380011814.01.T02:CDS | 35.0% | |
CTATTCCTAACATGCAAGAT+CGG | + | Chr3:5672897-5672916 | MsG0380011814.01.T02:CDS | 35.0% | |
GATAACATTTCACCAACAGT+TGG | - | Chr3:5672970-5672989 | None:intergenic | 35.0% | |
TATGACACACGATATCAAGT+TGG | + | Chr3:5673006-5673025 | MsG0380011814.01.T02:CDS | 35.0% | |
TATTCCTAACATGCAAGATC+GGG | + | Chr3:5672898-5672917 | MsG0380011814.01.T02:CDS | 35.0% | |
! | GTTGGTGAAATGTTATCAGT+TGG | + | Chr3:5672973-5672992 | MsG0380011814.01.T02:CDS | 35.0% |
!! | AATATTCGAAGTGCCAGTTT+TGG | - | Chr3:5673044-5673063 | None:intergenic | 35.0% |
ATTCCTAACATGCAAGATCG+GGG | + | Chr3:5672899-5672918 | MsG0380011814.01.T02:CDS | 40.0% | |
GGGTATAGACGCACTATATT+GGG | + | Chr3:5672919-5672938 | MsG0380011814.01.T02:CDS | 40.0% | |
TTCAGAGAATGACCAACTGT+TGG | + | Chr3:5672955-5672974 | MsG0380011814.01.T02:CDS | 40.0% | |
ATACCCCGATCTTGCATGTT+AGG | - | Chr3:5672905-5672924 | None:intergenic | 45.0% | |
GGGGTATAGACGCACTATAT+TGG | + | Chr3:5672918-5672937 | MsG0380011814.01.T02:CDS | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 5672854 | 5673132 | 5672854 | ID=MsG0380011814.01;Name=MsG0380011814.01 |
Chr3 | mRNA | 5672854 | 5673132 | 5672854 | ID=MsG0380011814.01.T01;Parent=MsG0380011814.01;Name=MsG0380011814.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|82 |
Chr3 | exon | 5672854 | 5672976 | 5672854 | ID=MsG0380011814.01.T01:exon:42035;Parent=MsG0380011814.01.T01 |
Chr3 | exon | 5673007 | 5673132 | 5673007 | ID=MsG0380011814.01.T01:exon:42036;Parent=MsG0380011814.01.T01 |
Chr3 | CDS | 5672854 | 5672976 | 5672854 | ID=MsG0380011814.01.T01:cds;Parent=MsG0380011814.01.T01 |
Chr3 | CDS | 5673007 | 5673132 | 5673007 | ID=MsG0380011814.01.T01:cds;Parent=MsG0380011814.01.T01 |
Chr3 | mRNA | 5672854 | 5673132 | 5672854 | ID=MsG0380011814.01.T02;Parent=MsG0380011814.01;Name=MsG0380011814.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|92 |
Chr3 | exon | 5672854 | 5673132 | 5672854 | ID=MsG0380011814.01.T02:exon:42037;Parent=MsG0380011814.01.T02 |
Chr3 | CDS | 5672854 | 5673132 | 5672854 | ID=MsG0380011814.01.T02:cds;Parent=MsG0380011814.01.T02 |
Gene Sequence |
Protein sequence |