AlfalfaGEDB | MsG0380016475.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016475.01

KEGG: K01179
GO: GO:0003824 GO:0004553 GO:0005975
PFAM: PF00759

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016475.01.T01	XP_003602165.2	81.5	600	30	5	1	519	1	600	0	965

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016475.01.T01	Q38890	39.652	517	225	9	49	502	94	586	1.89E-113	352

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016475.01.T01	G7J672	81.500	600	30	5	1	519	1	600	0.0	965

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0380016475.01	0.881352	2.578663e-70	1.505691e-66
MsG0080047944.01	MsG0380016475.01	0.815112	1.092145e-51	7.462539e-49
MsG0080047957.01	MsG0380016475.01	0.827068	1.918523e-54	1.832244e-51
MsG0080047959.01	MsG0380016475.01	0.838381	2.974996e-57	3.977736e-54
MsG0080048431.01	MsG0380016475.01	0.800880	1.170929e-48	5.513940e-46
MsG0080048461.01	MsG0380016475.01	0.807045	6.124306e-50	3.376405e-47
MsG0080048462.01	MsG0380016475.01	0.805046	1.612956e-49	8.447781e-47
MsG0080048764.01	MsG0380016475.01	0.819428	1.167640e-52	8.982807e-50
MsG0080048804.01	MsG0380016475.01	0.802136	6.472911e-49	3.146433e-46
MsG0080048874.01	MsG0380016475.01	0.852332	4.949073e-61	1.030663e-57

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016475.01.T01	MTR_3g090540	81.500	600	30	5	1	519	1	600	0.0	965
MsG0380016475.01.T01	MTR_2g028480	41.010	495	227	11	65	502	103	589	4.04e-110	340
MsG0380016475.01.T01	MTR_3g082440	39.216	510	244	13	66	518	106	606	8.93e-110	340
MsG0380016475.01.T01	MTR_5g009970	38.362	464	233	15	77	502	45	493	9.96e-90	284
MsG0380016475.01.T01	MTR_5g010000	37.844	473	241	14	73	507	40	497	5.02e-84	269
MsG0380016475.01.T01	MTR_3g080810	36.590	481	252	17	61	499	21	490	2.00e-82	265
MsG0380016475.01.T01	MTR_5g085730	35.830	494	258	15	71	516	29	511	7.10e-81	261
MsG0380016475.01.T01	MTR_3g080190	35.670	485	252	13	71	507	38	510	9.18e-81	261
MsG0380016475.01.T01	MTR_5g093590	37.214	481	241	16	71	502	32	500	1.05e-79	258
MsG0380016475.01.T01	MTR_8g099410	36.100	482	238	16	73	502	28	491	1.49e-79	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016475.01.T01	AT5G49720	39.652	517	225	9	49	502	94	586	1.92e-114	352
MsG0380016475.01.T01	AT1G65610	40.361	498	229	13	76	517	119	604	1.67e-107	334
MsG0380016475.01.T01	AT4G24260	39.511	491	218	12	76	502	111	586	3.83e-95	301
MsG0380016475.01.T01	AT4G11050	37.474	483	236	15	70	502	23	489	3.16e-83	268
MsG0380016475.01.T01	AT4G11050	37.474	483	236	15	70	502	23	489	1.15e-82	269
MsG0380016475.01.T01	AT4G11050	37.474	483	236	15	70	502	23	489	1.19e-82	269
MsG0380016475.01.T01	AT4G09740	35.669	471	247	13	71	502	21	474	2.43e-82	264
MsG0380016475.01.T01	AT4G23560	36.052	466	240	14	77	502	27	474	5.26e-82	263
MsG0380016475.01.T01	AT1G75680	38.462	455	232	13	77	493	61	505	7.30e-81	262
MsG0380016475.01.T01	AT2G32990	36.555	476	242	15	72	499	38	501	1.01e-80	261

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Find 101 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTCCAGTGAAATATA+GGG	0.359245	3:+83976345	MsG0380016475.01.T01:CDS
AAACATAATTGTAGGTGGAT+TGG	0.433774	3:+83977777	MsG0380016475.01.T01:intron
AAAGAAGACAAAGAATATTC+AGG	0.360641	3:+83977146	MsG0380016475.01.T01:CDS
AACAGTCCAGTGAAATATAG+GGG	0.594542	3:+83976346	MsG0380016475.01.T01:CDS
AACCCAATGATATAAGTTGC+TGG	0.439286	3:+83977012	MsG0380016475.01.T01:CDS
AACTAGTTACAAAGATGAGT+TGG	0.528623	3:+83977289	MsG0380016475.01.T01:CDS
AAGAAGACAAAGAATATTCA+GGG	0.466712	3:+83977147	MsG0380016475.01.T01:CDS
AAGATGCTGTTGCAGCATAC+TGG	0.416649	3:-83977831	None:intergenic
AAGCAGAAGACTTAGGAGTA+AGG	0.510802	3:-83975905	None:intergenic
AAGGAAGATCCTAAAAGGCA+AGG	0.606733	3:+83977212	MsG0380016475.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGTCCAGTGAAATATA+GGG	+	Chr3:83976345-83976364	MsG0380016475.01.T01:CDS	30.0%
AAACATAATTGTAGGTGGAT+TGG	+	Chr3:83977777-83977796	MsG0380016475.01.T01:intron	30.0%
AACTAGTTACAAAGATGAGT+TGG	+	Chr3:83977289-83977308	MsG0380016475.01.T01:CDS	30.0%
ACTGTATGCATATATATCAC+AGG	-	Chr3:83975822-83975841	None:intergenic	30.0%
ATACTATTACCTTGTTGAGT+TGG	+	Chr3:83976467-83976486	MsG0380016475.01.T01:CDS	30.0%
ATGACTTGAAAAACTCATTG+TGG	+	Chr3:83978369-83978388	MsG0380016475.01.T01:CDS	30.0%
ATGAGTTATTTAGTGGGATA+TGG	+	Chr3:83978080-83978099	MsG0380016475.01.T01:CDS	30.0%
GAAAAGACTAATCTTATTGG+TGG	+	Chr3:83976397-83976416	MsG0380016475.01.T01:CDS	30.0%
GGATGAAACAAATTTAGACA+AGG	+	Chr3:83977397-83977416	MsG0380016475.01.T01:CDS	30.0%
GGGTTCATTATTAGTACTAA+TGG	-	Chr3:83976997-83977016	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	83975789	83978403	83975789	ID=MsG0380016475.01;Name=MsG0380016475.01
Chr3	mRNA	83975789	83978403	83975789	ID=MsG0380016475.01.T01;Parent=MsG0380016475.01;Name=MsG0380016475.01.T01;_AED=0.14;_eAED=0.19;_QI=0\|0\|0\|1\|1\|1\|7\|0\|520
Chr3	exon	83975789	83975977	83975789	ID=MsG0380016475.01.T01:exon:14116;Parent=MsG0380016475.01.T01
Chr3	exon	83976079	83976157	83976079	ID=MsG0380016475.01.T01:exon:14117;Parent=MsG0380016475.01.T01
Chr3	exon	83976329	83976582	83976329	ID=MsG0380016475.01.T01:exon:14118;Parent=MsG0380016475.01.T01
Chr3	exon	83976984	83977456	83976984	ID=MsG0380016475.01.T01:exon:14119;Parent=MsG0380016475.01.T01
Chr3	exon	83977546	83977583	83977546	ID=MsG0380016475.01.T01:exon:14120;Parent=MsG0380016475.01.T01
Chr3	exon	83977791	83977963	83977791	ID=MsG0380016475.01.T01:exon:14121;Parent=MsG0380016475.01.T01
Chr3	exon	83978047	83978403	83978047	ID=MsG0380016475.01.T01:exon:14122;Parent=MsG0380016475.01.T01
Chr3	CDS	83975789	83975977	83975789	ID=MsG0380016475.01.T01:cds;Parent=MsG0380016475.01.T01
Chr3	CDS	83976079	83976157	83976079	ID=MsG0380016475.01.T01:cds;Parent=MsG0380016475.01.T01
Chr3	CDS	83976329	83976582	83976329	ID=MsG0380016475.01.T01:cds;Parent=MsG0380016475.01.T01
Chr3	CDS	83976984	83977456	83976984	ID=MsG0380016475.01.T01:cds;Parent=MsG0380016475.01.T01
Chr3	CDS	83977546	83977583	83977546	ID=MsG0380016475.01.T01:cds;Parent=MsG0380016475.01.T01
Chr3	CDS	83977791	83977963	83977791	ID=MsG0380016475.01.T01:cds;Parent=MsG0380016475.01.T01
Chr3	CDS	83978047	83978403	83978047	ID=MsG0380016475.01.T01:cds;Parent=MsG0380016475.01.T01

Gene Sequence

>MsG0380016475.01.T01

ATGCCACCAAAATTAGAGTCAGAGAAGAATCCTGTGATATATATGCATACAGTTTCAGAAGCTGGTCGACTTCTCCCTTCATCAAGCCGCTGGAACGCCATAGCACTTGATTTCAACCTTACTCCTAAGTCTTCTGCTTCTTATGAGTCCATTCCTTCCCAATATCCAAAATCTGTTGACTGCAATCTAAAGCACAAACATCAAGACTCGTCTATCGATCTCAAGTTGGCAATAAATCAAGCTCTAACATTTTATGATGCACAAAAATCTGGGAACTATCCAAGAAACAGTCCAGTGAAATATAGGGGAGACTCTGGATTAAAAGATGGGAATTCAGAAAAGACTAATCTTATTGGTGGATATTATGATTCAGGCAACAACATTAAGTTTACATTCACCACAGCTTATACTATTACCTTGTTGAGTTGGACTGCAATGGAATATCAAAGTAAATATGCTGATATTGATGAGCTTGATCATGTTAGGGATATCATCAGATGGGGTACTGACTACTTGCTTAAGGTTGGAAGTACCATTAGTACTAATAATGAACCCAATGATATAAGTTGCTGGCAAAGACCTGAAGACATGAATTATGGGAGACTGGTTTCAGTTTGTGATGGCTCAGCTACAGATTTAGCTGGTGAAATTGTGGCAGCATTATCTGCGGCGTCGATGGTATTCAAAGAAGACAAAGAATATTCAGGGAAACTAGTTCAAGCAGCAGAAAGCCTATATGAGGTAGTTACAAAGGAAGATCCTAAAAGGCAAGGAACCTACACCACTGTTGATGCATGTGGAAAACAAGCAAGAATGCTTTATAACTCAACTAGTTACAAAGATGAGTTGGCTTGGGGAGCTACTTGGTTATTTCTTGCTACTAAAAACACTGATTATCTTGCAAATGCAACTCAATTTTTTTTATCAGCAAAGAAGGATGAAACAAATTTAGACAAGGGGTGTTTTATTGGAATAACAAGCTCGATGCTGTTGCGGTTTTGCTTGCTGGTATTCGATATTTCCGTGATCCCGGGTGGATTGGTTATTCCAAAACCTGATAATGGACCATTACTCCAGTATGCTGCAACAGCATCTTTTCTCAGTAAATTGTATAGTGATTACATTGATCATCTCAAAATATCCGGTGCAAGCTGCGAAACCGATGCATTCTCAGTTTCAATGCTTCGTGATTTTTCAAGCTCTCAGGTTAACTACATCTTGGGACAAAATCCAATGAAAATGAGTTATTTAGTGGGATATGGTGATAAGTTTCCAGTCCAAGTTCATCATAGAAGTGCGTCGATCCCTTGGGATAAACGGTACTACAATTGTGATGATGGTAAGACATGGCTGAACTCGAAAAATCCAAACCCACAAGTTCTTTTGGGAGCCATGGTAGGAGGGCCAGACACAAATGATCATTTTACTGATCAGAGGAGCAACAAAAGGTTCACTGAGCCAACCATATCAAGCAATGCTGGCTTAGTTGCAGCATTGATTGCACTTCAAGATCCTTCTAATAATTCACATGACTTGAAAAACTCATTGTGGGAATGGACTTGA

Protein sequence

>MsG0380016475.01.T01

MPPKLESEKNPVIYMHTVSEAGRLLPSSSRWNAIALDFNLTPKSSASYESIPSQYPKSVDCNLKHKHQDSSIDLKLAINQALTFYDAQKSGNYPRNSPVKYRGDSGLKDGNSEKTNLIGGYYDSGNNIKFTFTTAYTITLLSWTAMEYQSKYADIDELDHVRDIIRWGTDYLLKVGSTISTNNEPNDISCWQRPEDMNYGRLVSVCDGSATDLAGEIVAALSAASMVFKEDKEYSGKLVQAAESLYEVVTKEDPKRQGTYTTVDACGKQARMLYNSTSYKDELAWGATWLFLATKNTDYLANATQFFLSAKKDETNLDKGCFIGITSSMLLRFCLLVFDISVIPGGLVIPKPDNGPLLQYAATASFLSKLYSDYIDHLKISGASCETDAFSVSMLRDFSSSQVNYILGQNPMKMSYLVGYGDKFPVQVHHRSASIPWDKRYYNCDDGKTWLNSKNPNPQVLLGAMVGGPDTNDHFTDQRSNKRFTEPTISSNAGLVAALIALQDPSNNSHDLKNSLWEWT*