Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011977.01.T01 | XP_013458869.1 | 95.639 | 665 | 22 | 4 | 1 | 659 | 1 | 664 | 0 | 1318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011977.01.T01 | Q9FF80 | 56.281 | 597 | 236 | 9 | 65 | 658 | 95 | 669 | 0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011977.01.T01 | A0A072UU96 | 95.639 | 665 | 22 | 4 | 1 | 659 | 1 | 664 | 0.0 | 1318 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380011977.01.T01 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011977.01 | MsG0380017365.01 | 0.854460 | 1.213236e-61 | 2.711344e-58 |
| MsG0380011977.01 | MsG0480022842.01 | 0.808449 | 3.080086e-50 | 1.761717e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380017369.01 | MsG0380011977.01 | PPI |
| MsG0880043865.01 | MsG0380011977.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011977.01.T01 | MTR_3g011440 | 95.639 | 665 | 22 | 4 | 1 | 659 | 1 | 664 | 0.0 | 1318 |
| MsG0380011977.01.T01 | MTR_8g042750 | 59.797 | 689 | 227 | 9 | 15 | 658 | 4 | 687 | 0.0 | 841 |
| MsG0380011977.01.T01 | MTR_7g088370 | 46.794 | 733 | 286 | 18 | 1 | 658 | 1 | 704 | 0.0 | 633 |
| MsG0380011977.01.T01 | MTR_5g013420 | 41.373 | 539 | 294 | 13 | 125 | 658 | 567 | 1088 | 4.74e-122 | 389 |
| MsG0380011977.01.T01 | MTR_5g013420 | 41.527 | 537 | 292 | 13 | 125 | 656 | 567 | 1086 | 5.29e-122 | 389 |
| MsG0380011977.01.T01 | MTR_4g010830 | 39.703 | 539 | 302 | 14 | 125 | 658 | 459 | 979 | 1.55e-112 | 361 |
| MsG0380011977.01.T01 | MTR_8g070075 | 40.546 | 476 | 251 | 12 | 172 | 631 | 290 | 749 | 7.44e-110 | 348 |
| MsG0380011977.01.T01 | MTR_8g070070 | 41.239 | 468 | 255 | 12 | 174 | 631 | 299 | 756 | 1.20e-109 | 348 |
| MsG0380011977.01.T01 | MTR_1g035420 | 37.058 | 537 | 299 | 14 | 108 | 631 | 135 | 645 | 2.71e-106 | 336 |
| MsG0380011977.01.T01 | MTR_8g071030 | 36.007 | 561 | 316 | 15 | 94 | 631 | 196 | 736 | 3.44e-104 | 333 |
| MsG0380011977.01.T01 | MTR_4g010550 | 38.353 | 498 | 253 | 14 | 166 | 658 | 15 | 463 | 6.47e-99 | 311 |
| MsG0380011977.01.T01 | MTR_6g061270 | 37.278 | 507 | 285 | 14 | 171 | 655 | 195 | 690 | 2.59e-94 | 306 |
| MsG0380011977.01.T01 | MTR_7g084090 | 36.957 | 506 | 293 | 11 | 169 | 655 | 255 | 753 | 1.45e-93 | 305 |
| MsG0380011977.01.T01 | MTR_1g035400 | 34.766 | 512 | 300 | 14 | 139 | 631 | 68 | 564 | 8.06e-91 | 293 |
| MsG0380011977.01.T01 | MTR_6g044690 | 36.179 | 492 | 279 | 12 | 157 | 633 | 94 | 565 | 7.91e-89 | 288 |
| MsG0380011977.01.T01 | MTR_6g061200 | 35.529 | 501 | 273 | 13 | 171 | 655 | 195 | 661 | 5.78e-88 | 288 |
| MsG0380011977.01.T01 | MTR_0376s0030 | 35.098 | 510 | 291 | 14 | 135 | 633 | 83 | 563 | 5.58e-85 | 278 |
| MsG0380011977.01.T01 | MTR_6g043960 | 32.994 | 491 | 279 | 13 | 155 | 633 | 31 | 483 | 5.13e-71 | 238 |
| MsG0380011977.01.T01 | MTR_7g084090 | 38.547 | 358 | 206 | 7 | 169 | 515 | 255 | 609 | 1.20e-69 | 239 |
| MsG0380011977.01.T01 | MTR_1g048950 | 34.151 | 489 | 262 | 13 | 189 | 658 | 85 | 532 | 2.86e-66 | 228 |
| MsG0380011977.01.T01 | MTR_2g054460 | 31.055 | 512 | 281 | 12 | 139 | 633 | 9 | 465 | 4.45e-65 | 222 |
| MsG0380011977.01.T01 | MTR_7g445710 | 30.165 | 547 | 269 | 20 | 135 | 654 | 78 | 538 | 2.07e-59 | 209 |
| MsG0380011977.01.T01 | MTR_7g445530 | 30.134 | 521 | 253 | 19 | 135 | 630 | 78 | 512 | 1.21e-55 | 197 |
| MsG0380011977.01.T01 | MTR_7g450730 | 28.707 | 526 | 269 | 16 | 135 | 654 | 75 | 500 | 1.10e-53 | 192 |
| MsG0380011977.01.T01 | MTR_7g052480 | 31.680 | 363 | 210 | 11 | 302 | 655 | 219 | 552 | 3.62e-42 | 161 |
| MsG0380011977.01.T01 | MTR_5g018850 | 31.562 | 320 | 168 | 9 | 370 | 658 | 1207 | 1506 | 2.30e-32 | 134 |
| MsG0380011977.01.T01 | MTR_8g078490 | 29.909 | 331 | 174 | 10 | 361 | 658 | 947 | 1252 | 5.55e-31 | 130 |
| MsG0380011977.01.T01 | MTR_1g080340 | 27.811 | 338 | 168 | 11 | 372 | 655 | 267 | 582 | 6.69e-31 | 128 |
| MsG0380011977.01.T01 | MTR_8g078505 | 29.193 | 322 | 177 | 9 | 359 | 654 | 237 | 533 | 5.51e-29 | 122 |
| MsG0380011977.01.T01 | MTR_1g069570 | 28.743 | 334 | 169 | 10 | 372 | 655 | 428 | 742 | 2.39e-28 | 121 |
| MsG0380011977.01.T01 | MTR_4g132610 | 34.703 | 219 | 114 | 5 | 445 | 658 | 852 | 1046 | 1.24e-27 | 119 |
| MsG0380011977.01.T01 | MTR_7g098390 | 28.049 | 328 | 173 | 7 | 374 | 655 | 388 | 698 | 1.68e-25 | 112 |
| MsG0380011977.01.T01 | MTR_7g445600 | 35.714 | 154 | 58 | 2 | 477 | 630 | 243 | 355 | 8.65e-24 | 103 |
| MsG0380011977.01.T01 | MTR_7g445600 | 31.737 | 167 | 93 | 6 | 135 | 300 | 74 | 220 | 2.65e-11 | 66.2 |
| MsG0380011977.01.T01 | MTR_1g069570 | 26.966 | 267 | 128 | 8 | 372 | 589 | 428 | 676 | 1.06e-17 | 87.8 |
| MsG0380011977.01.T01 | MTR_0071s0100 | 30.928 | 194 | 96 | 5 | 463 | 656 | 191 | 346 | 5.45e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380011977.01.T01 | AT5G04940 | 56.281 | 597 | 236 | 9 | 65 | 658 | 95 | 669 | 0.0 | 684 |
| MsG0380011977.01.T01 | AT5G04940 | 56.281 | 597 | 236 | 9 | 65 | 658 | 95 | 669 | 0.0 | 684 |
| MsG0380011977.01.T01 | AT1G73100 | 51.180 | 678 | 291 | 10 | 6 | 658 | 6 | 668 | 0.0 | 682 |
| MsG0380011977.01.T01 | AT1G17770 | 43.351 | 579 | 292 | 12 | 98 | 659 | 134 | 693 | 2.69e-154 | 462 |
| MsG0380011977.01.T01 | AT2G24740 | 44.732 | 541 | 250 | 14 | 129 | 658 | 252 | 754 | 8.55e-147 | 444 |
| MsG0380011977.01.T01 | AT2G35160 | 37.730 | 599 | 307 | 20 | 70 | 658 | 215 | 757 | 7.90e-112 | 354 |
| MsG0380011977.01.T01 | AT2G35160 | 37.730 | 599 | 307 | 20 | 70 | 658 | 251 | 793 | 2.12e-111 | 353 |
| MsG0380011977.01.T01 | AT2G35160 | 37.730 | 599 | 307 | 20 | 70 | 658 | 251 | 793 | 2.12e-111 | 353 |
| MsG0380011977.01.T01 | AT2G35160 | 37.730 | 599 | 307 | 20 | 70 | 658 | 251 | 793 | 2.12e-111 | 353 |
| MsG0380011977.01.T01 | AT2G35160 | 37.730 | 599 | 307 | 20 | 70 | 658 | 251 | 793 | 2.12e-111 | 353 |
| MsG0380011977.01.T01 | AT4G13460 | 39.130 | 506 | 282 | 13 | 139 | 631 | 145 | 637 | 7.59e-108 | 340 |
| MsG0380011977.01.T01 | AT4G13460 | 39.130 | 506 | 282 | 13 | 139 | 631 | 145 | 637 | 7.59e-108 | 340 |
| MsG0380011977.01.T01 | AT2G33290 | 38.976 | 508 | 296 | 8 | 139 | 640 | 149 | 648 | 1.40e-106 | 337 |
| MsG0380011977.01.T01 | AT2G33290 | 38.976 | 508 | 296 | 8 | 139 | 640 | 149 | 648 | 1.40e-106 | 337 |
| MsG0380011977.01.T01 | AT2G33290 | 38.976 | 508 | 296 | 8 | 139 | 640 | 149 | 648 | 1.40e-106 | 337 |
| MsG0380011977.01.T01 | AT2G33290 | 38.976 | 508 | 296 | 8 | 139 | 640 | 149 | 648 | 1.40e-106 | 337 |
| MsG0380011977.01.T01 | AT2G22740 | 37.782 | 532 | 301 | 13 | 139 | 655 | 270 | 786 | 6.09e-106 | 339 |
| MsG0380011977.01.T01 | AT2G22740 | 37.782 | 532 | 301 | 13 | 139 | 655 | 270 | 786 | 6.09e-106 | 339 |
| MsG0380011977.01.T01 | AT5G13960 | 36.214 | 486 | 277 | 14 | 192 | 655 | 12 | 486 | 1.05e-91 | 293 |
| MsG0380011977.01.T01 | AT5G13960 | 35.294 | 510 | 297 | 14 | 168 | 655 | 122 | 620 | 1.09e-90 | 295 |
| MsG0380011977.01.T01 | AT2G05900 | 41.176 | 221 | 121 | 4 | 212 | 428 | 1 | 216 | 4.59e-45 | 163 |
| MsG0380011977.01.T01 | AT2G05900 | 56.098 | 82 | 30 | 1 | 577 | 658 | 236 | 311 | 1.73e-22 | 99.4 |
| MsG0380011977.01.T01 | AT5G47150 | 41.589 | 214 | 113 | 5 | 139 | 347 | 118 | 324 | 3.77e-41 | 153 |
| MsG0380011977.01.T01 | AT3G04380 | 28.012 | 332 | 174 | 8 | 372 | 655 | 117 | 431 | 3.97e-36 | 142 |
| MsG0380011977.01.T01 | AT3G04380 | 28.012 | 332 | 174 | 8 | 372 | 655 | 144 | 458 | 4.40e-36 | 142 |
| MsG0380011977.01.T01 | AT3G04380 | 28.012 | 332 | 174 | 8 | 372 | 655 | 144 | 458 | 4.64e-36 | 142 |
| MsG0380011977.01.T01 | AT3G04380 | 28.012 | 332 | 174 | 8 | 372 | 655 | 128 | 442 | 4.68e-36 | 142 |
| MsG0380011977.01.T01 | AT3G04380 | 28.012 | 332 | 174 | 8 | 372 | 655 | 101 | 415 | 4.95e-36 | 141 |
| MsG0380011977.01.T01 | AT3G04380 | 28.012 | 332 | 174 | 8 | 372 | 655 | 117 | 431 | 5.20e-36 | 141 |
| MsG0380011977.01.T01 | AT5G47160 | 37.302 | 252 | 139 | 7 | 103 | 344 | 166 | 408 | 2.26e-34 | 136 |
| MsG0380011977.01.T01 | AT5G47160 | 37.302 | 252 | 139 | 7 | 103 | 344 | 166 | 408 | 2.26e-34 | 136 |
| MsG0380011977.01.T01 | AT5G47160 | 37.302 | 252 | 139 | 7 | 103 | 344 | 166 | 408 | 2.26e-34 | 136 |
| MsG0380011977.01.T01 | AT2G23740 | 32.602 | 319 | 165 | 15 | 368 | 659 | 1080 | 1375 | 4.51e-33 | 137 |
| MsG0380011977.01.T01 | AT2G23740 | 32.602 | 319 | 165 | 15 | 368 | 659 | 1087 | 1382 | 4.57e-33 | 137 |
| MsG0380011977.01.T01 | AT2G23740 | 32.602 | 319 | 165 | 15 | 368 | 659 | 1087 | 1382 | 4.57e-33 | 137 |
| MsG0380011977.01.T01 | AT2G23740 | 32.602 | 319 | 165 | 15 | 368 | 659 | 1087 | 1382 | 4.57e-33 | 137 |
| MsG0380011977.01.T01 | AT1G04050 | 30.539 | 334 | 161 | 12 | 372 | 655 | 303 | 615 | 1.54e-31 | 130 |
| MsG0380011977.01.T01 | AT1G04050 | 31.045 | 335 | 158 | 14 | 372 | 655 | 407 | 719 | 1.85e-31 | 131 |
| MsG0380011977.01.T01 | AT1G04050 | 31.045 | 335 | 158 | 14 | 372 | 655 | 407 | 719 | 1.85e-31 | 131 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 373 | 682 | 1.40e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 373 | 682 | 1.40e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 373 | 682 | 1.40e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 373 | 682 | 1.40e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 393 | 702 | 1.47e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 393 | 702 | 1.47e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 393 | 702 | 1.47e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 393 | 702 | 1.47e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 324 | 633 | 1.57e-28 | 121 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 324 | 633 | 1.57e-28 | 121 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 324 | 633 | 1.57e-28 | 121 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 324 | 633 | 1.57e-28 | 121 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 304 | 613 | 1.58e-28 | 121 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 396 | 705 | 1.72e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 396 | 705 | 1.72e-28 | 122 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 416 | 725 | 1.86e-28 | 121 |
| MsG0380011977.01.T01 | AT5G43990 | 28.144 | 334 | 166 | 12 | 372 | 655 | 416 | 725 | 1.86e-28 | 121 |
| MsG0380011977.01.T01 | AT3G03750 | 33.186 | 226 | 128 | 7 | 435 | 658 | 145 | 349 | 6.29e-25 | 107 |
| MsG0380011977.01.T01 | AT2G23740 | 32.932 | 249 | 119 | 14 | 368 | 589 | 1087 | 1314 | 2.58e-21 | 100 |
| MsG0380011977.01.T01 | AT2G23740 | 32.932 | 249 | 119 | 14 | 368 | 589 | 1087 | 1314 | 2.58e-21 | 100 |
| MsG0380011977.01.T01 | AT3G03750 | 29.911 | 224 | 122 | 7 | 435 | 658 | 145 | 333 | 1.68e-18 | 87.8 |
| MsG0380011977.01.T01 | AT1G76710 | 32.020 | 203 | 88 | 7 | 462 | 656 | 66 | 226 | 1.69e-16 | 83.2 |
| MsG0380011977.01.T01 | AT1G76710 | 32.020 | 203 | 88 | 7 | 462 | 656 | 66 | 226 | 1.69e-16 | 83.2 |
| MsG0380011977.01.T01 | AT1G77300 | 30.890 | 191 | 98 | 5 | 466 | 656 | 1008 | 1164 | 2.01e-16 | 84.3 |
| MsG0380011977.01.T01 | AT1G76710 | 32.020 | 203 | 88 | 7 | 462 | 656 | 66 | 226 | 2.44e-16 | 82.8 |
| MsG0380011977.01.T01 | AT1G76710 | 32.020 | 203 | 88 | 7 | 462 | 656 | 66 | 226 | 2.68e-16 | 82.8 |
| MsG0380011977.01.T01 | AT1G77300 | 30.890 | 191 | 98 | 5 | 466 | 656 | 1008 | 1164 | 2.89e-16 | 84.0 |
| MsG0380011977.01.T01 | AT4G30860 | 30.256 | 195 | 96 | 6 | 463 | 656 | 307 | 462 | 7.34e-14 | 75.1 |
| MsG0380011977.01.T01 | AT3G59960 | 28.333 | 180 | 75 | 6 | 485 | 655 | 112 | 246 | 7.86e-12 | 67.0 |
| MsG0380011977.01.T01 | AT3G59960 | 28.333 | 180 | 75 | 6 | 485 | 655 | 112 | 246 | 7.86e-12 | 67.0 |
| MsG0380011977.01.T01 | AT3G59960 | 28.333 | 180 | 75 | 6 | 485 | 655 | 112 | 246 | 7.86e-12 | 67.0 |
| MsG0380011977.01.T01 | AT3G59960 | 28.333 | 180 | 75 | 6 | 485 | 655 | 112 | 246 | 2.64e-11 | 65.9 |
Find 168 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAGGTCAGTATCCTTC+TGG | 0.204050 | 3:-8735260 | MsG0380011977.01.T01:CDS |
| ACAGGTATCAAACTTCTTAT+AGG | 0.235001 | 3:+8735308 | None:intergenic |
| CGACTCCACTTCAAGCATTT+AGG | 0.258428 | 3:-8735169 | MsG0380011977.01.T01:CDS |
| CAAGCATTTAGGAGCCCTTT+TGG | 0.274971 | 3:-8735158 | MsG0380011977.01.T01:CDS |
| CATTGACAAGTATAAGATTC+TGG | 0.293840 | 3:-8735339 | MsG0380011977.01.T01:CDS |
| AGAGTGGAAATATGTGAAAA+AGG | 0.306165 | 3:+8734194 | None:intergenic |
| TGCATTAAACTGAATGATTT+CGG | 0.306178 | 3:+8734162 | None:intergenic |
| CATGAGTTAACATATGATTA+TGG | 0.312052 | 3:-8733514 | MsG0380011977.01.T01:CDS |
| TGTATAAAATTCAAGATTCA+TGG | 0.343226 | 3:-8734428 | MsG0380011977.01.T01:CDS |
| TTCTTAGCATTTATAATAAG+AGG | 0.346128 | 3:+8733670 | None:intergenic |
| AGCATGTGTCCCTGGCGATT+TGG | 0.346957 | 3:-8734106 | MsG0380011977.01.T01:CDS |
| AGAACTCCATTGATAATATA+CGG | 0.356399 | 3:+8734048 | None:intergenic |
| CGAATGGAAATGTGTGTTAT+CGG | 0.357207 | 3:-8734759 | MsG0380011977.01.T01:CDS |
| CTTCAGGTCAGTATCCTTCT+GGG | 0.359790 | 3:-8735259 | MsG0380011977.01.T01:CDS |
| AACCTAGTGCCTTTGCCGTT+TGG | 0.360454 | 3:-8734344 | MsG0380011977.01.T01:CDS |
| GTATATTATCAATGGAGTTC+TGG | 0.362491 | 3:-8734046 | MsG0380011977.01.T01:CDS |
| TTTGGTGCTTCAAACCGGTT+TGG | 0.365259 | 3:+8733950 | None:intergenic |
| AGGATAAAGGTTGGGGTCTT+CGG | 0.367552 | 3:-8733909 | MsG0380011977.01.T01:CDS |
| TCATAAGGGTAATCTTGCTT+TGG | 0.385063 | 3:-8734544 | MsG0380011977.01.T01:CDS |
| CAAAACAAAGGATAAAGGTT+GGG | 0.388648 | 3:-8733917 | MsG0380011977.01.T01:CDS |
| TTGGTGCTTCAAACCGGTTT+GGG | 0.391461 | 3:+8733951 | None:intergenic |
| AATCCTCAAGGTCAATCTTC+AGG | 0.392097 | 3:-8735275 | MsG0380011977.01.T01:CDS |
| TGTTATAATTTATACCGGTC+AGG | 0.396575 | 3:-8734613 | MsG0380011977.01.T01:CDS |
| TGTGTTTGTTCGAATTCCTT+TGG | 0.402301 | 3:+8734836 | None:intergenic |
| GATTGATGCCTTGCATATCC+AGG | 0.403598 | 3:-8734712 | MsG0380011977.01.T01:CDS |
| ACTTGAAAGATTCATAAATA+CGG | 0.407062 | 3:+8733764 | None:intergenic |
| CAGTACCTGGAGTTGAGATT+GGG | 0.418871 | 3:-8734797 | MsG0380011977.01.T01:CDS |
| ACAGGCTGCCAGAAAACATT+TGG | 0.419329 | 3:+8733607 | None:intergenic |
| ATTTGGACTGCTCATGCATT+CGG | 0.422721 | 3:-8734089 | MsG0380011977.01.T01:CDS |
| TACCATTGTCTCTTTGACCT+GGG | 0.423334 | 3:+8734994 | None:intergenic |
| TCAGTACCTGGAGTTGAGAT+TGG | 0.424381 | 3:-8734798 | MsG0380011977.01.T01:CDS |
| CGAACCCGTGTTCAATTCCT+TGG | 0.424960 | 3:+8734899 | None:intergenic |
| TTCCATTTGGTGCTTCAAAC+CGG | 0.425045 | 3:+8733945 | None:intergenic |
| CGGTTTGCATGCTCAATCCA+TGG | 0.428182 | 3:-8734739 | MsG0380011977.01.T01:CDS |
| ATTATAAATGCTAAGAATGT+TGG | 0.437154 | 3:-8733664 | MsG0380011977.01.T01:CDS |
| GCTGTTAGCATTGTTTCGTC+AGG | 0.439867 | 3:-8734666 | MsG0380011977.01.T01:CDS |
| AGAATAAGTCCAGTCCTTGC+AGG | 0.449322 | 3:+8734291 | None:intergenic |
| AAGGTTGGGGTCTTCGGTCA+TGG | 0.451618 | 3:-8733903 | MsG0380011977.01.T01:CDS |
| GCTGGTTTCCCTGCAAGGAC+TGG | 0.456055 | 3:-8734300 | MsG0380011977.01.T01:CDS |
| ATAAAAGCACCAGCACGAAT+AGG | 0.460396 | 3:+8733877 | None:intergenic |
| TTACCATTGTCTCTTTGACC+TGG | 0.461172 | 3:+8734993 | None:intergenic |
| GTGTTCAAAACAAAGGATAA+AGG | 0.462890 | 3:-8733922 | MsG0380011977.01.T01:CDS |
| CGATAACACACATTTCCATT+CGG | 0.476797 | 3:+8734760 | None:intergenic |
| TATTCTTGCTGACCTCTCCT+CGG | 0.477270 | 3:-8734274 | MsG0380011977.01.T01:CDS |
| AGATCCTCATCCTCTCCAAA+AGG | 0.481832 | 3:+8735143 | None:intergenic |
| GTATCATGAGGTCCACCAAA+TGG | 0.483316 | 3:+8735221 | None:intergenic |
| CTTGAAAGATTCATAAATAC+GGG | 0.486596 | 3:+8733765 | None:intergenic |
| GTCAGATCAGAAGCTTCATA+AGG | 0.487005 | 3:-8734559 | MsG0380011977.01.T01:CDS |
| CATGAGCAGTCCAAATCGCC+AGG | 0.488074 | 3:+8734096 | None:intergenic |
| ACTTCATTGACAAGGGATAC+AGG | 0.490029 | 3:+8734237 | None:intergenic |
| GTTGATATGAGTGGTTTAGT+TGG | 0.492160 | 3:-8735023 | MsG0380011977.01.T01:CDS |
| TGTATAATGGAAGAAGGGTT+AGG | 0.492317 | 3:-8735389 | None:intergenic |
| TTGTTCTCTTCATATAAGAC+AGG | 0.494732 | 3:+8733589 | None:intergenic |
| CAGAATCTTATACTTGTCAA+TGG | 0.495015 | 3:+8735340 | None:intergenic |
| GCACAATATTAACAACTTCA+CGG | 0.500326 | 3:+8734970 | None:intergenic |
| TGCATATCCAGGGTGACCGC+GGG | 0.500357 | 3:-8734701 | MsG0380011977.01.T01:CDS |
| GGTTTGCATGCTCAATCCAT+GGG | 0.501866 | 3:-8734738 | MsG0380011977.01.T01:CDS |
| TCACAGCATCTTTGATGCCT+CGG | 0.503981 | 3:+8734484 | None:intergenic |
| TATCATGAGGTCCACCAAAT+GGG | 0.505449 | 3:+8735222 | None:intergenic |
| AACCGGTTTGAAGCACCAAA+TGG | 0.508329 | 3:-8733947 | MsG0380011977.01.T01:CDS |
| TCTGTTCAGAAGTGGAAAGC+TGG | 0.508734 | 3:-8734318 | MsG0380011977.01.T01:CDS |
| TCATGGGATCCTATTCGTGC+TGG | 0.510420 | 3:-8733886 | MsG0380011977.01.T01:CDS |
| ATCAAAGATGCTGTGACTCC+AGG | 0.511194 | 3:-8734477 | MsG0380011977.01.T01:CDS |
| GGTGATGTTATAATTTATAC+CGG | 0.512209 | 3:-8734618 | MsG0380011977.01.T01:CDS |
| TATCTTCCCCGCGGTCACCC+TGG | 0.516259 | 3:+8734694 | None:intergenic |
| ATTCTTGCTGACCTCTCCTC+GGG | 0.517115 | 3:-8734273 | MsG0380011977.01.T01:CDS |
| GTGAATTGTATAATGGAAGA+AGG | 0.518785 | 3:-8735395 | None:intergenic |
| TCAATGGAGTTCTGGCGAAT+CGG | 0.519477 | 3:-8734038 | MsG0380011977.01.T01:CDS |
| GTATAAAATTCAAGATTCAT+GGG | 0.521482 | 3:-8734427 | MsG0380011977.01.T01:CDS |
| AGGTTGGGGTCTTCGGTCAT+GGG | 0.522878 | 3:-8733902 | MsG0380011977.01.T01:CDS |
| TATAAGTTGATAAGAGTGCC+TGG | 0.523531 | 3:-8734369 | MsG0380011977.01.T01:CDS |
| TTTGCGTGCACTGCTACCCT+CGG | 0.525087 | 3:+8733480 | None:intergenic |
| TCAACACTCAGTTCCTCCCC+CGG | 0.526455 | 3:-8735366 | MsG0380011977.01.T01:CDS |
| TGACCGCGGGGAAGATACTT+TGG | 0.527412 | 3:-8734688 | MsG0380011977.01.T01:CDS |
| GGTTTAGTTGGTATAAGCCC+AGG | 0.529198 | 3:-8735011 | MsG0380011977.01.T01:CDS |
| TGCATGCTCAATCCATGGGG+GGG | 0.529678 | 3:-8734734 | MsG0380011977.01.T01:CDS |
| AAACGTACCGATTTAAAAGC+TGG | 0.530169 | 3:-8734873 | MsG0380011977.01.T01:CDS |
| GTTGAAATTCCCACCCTGAC+CGG | 0.530593 | 3:+8734599 | None:intergenic |
| TCATATGTTAACTCATGCAT+TGG | 0.532861 | 3:+8733520 | None:intergenic |
| CGGCAGCATCACATTCAAGC+CGG | 0.533696 | 3:-8735085 | MsG0380011977.01.T01:CDS |
| TCAAAACAAAGGATAAAGGT+TGG | 0.534159 | 3:-8733918 | MsG0380011977.01.T01:CDS |
| GGTAGAAAGAAATGCTTATG+TGG | 0.534383 | 3:-8733457 | MsG0380011977.01.T01:CDS |
| TCAGATCAGAAGCTTCATAA+GGG | 0.535931 | 3:-8734558 | MsG0380011977.01.T01:CDS |
| ACTGCTACCCTCGGTGTGAT+CGG | 0.536665 | 3:+8733489 | None:intergenic |
| CATTTGATGCGCTAAGAAGA+AGG | 0.540823 | 3:-8734941 | MsG0380011977.01.T01:CDS |
| AAAACAAAGGATAAAGGTTG+GGG | 0.541211 | 3:-8733916 | MsG0380011977.01.T01:CDS |
| ATGTTAACTCATGCATTGGT+GGG | 0.541447 | 3:+8733524 | None:intergenic |
| GGAGTCGGCATCACTCTACT+TGG | 0.541904 | 3:+8735185 | None:intergenic |
| CGTTATCGACTTCATTGACA+AGG | 0.541988 | 3:+8734229 | None:intergenic |
| GGCAATATTTGTATGACCAA+AGG | 0.542268 | 3:-8734852 | MsG0380011977.01.T01:CDS |
| GGAAAGCTGGTTTCCCTGCA+AGG | 0.545796 | 3:-8734305 | MsG0380011977.01.T01:CDS |
| GACTCTCGGCTCCCGAGGAG+AGG | 0.546001 | 3:+8734262 | None:intergenic |
| TCATGCATTCGGAGAAATGA+AGG | 0.546789 | 3:-8734078 | MsG0380011977.01.T01:CDS |
| ATCTCAACTTGTAGATGCCA+AGG | 0.547043 | 3:-8734916 | MsG0380011977.01.T01:CDS |
| ATGCAACATGGAGAAAGGAT+TGG | 0.548940 | 3:+8733566 | None:intergenic |
| TTCCAAACGGCAAAGGCACT+AGG | 0.550397 | 3:+8734342 | None:intergenic |
| GATCCTCATCCTCTCCAAAA+GGG | 0.552939 | 3:+8735144 | None:intergenic |
| TTTGGAAATCTGTTCAGAAG+TGG | 0.553589 | 3:-8734326 | MsG0380011977.01.T01:CDS |
| ATGTCCCCAATCTCAACTCC+AGG | 0.554821 | 3:+8734792 | None:intergenic |
| TCTTAGCATTTATAATAAGA+GGG | 0.554977 | 3:+8733671 | None:intergenic |
| GGCAGCATCACATTCAAGCC+GGG | 0.555680 | 3:-8735084 | MsG0380011977.01.T01:CDS |
| GTATTTATGAATCTTTCAAG+TGG | 0.556979 | 3:-8733762 | MsG0380011977.01.T01:CDS |
| GCAAAGGCACTAGGTTGTCC+AGG | 0.558915 | 3:+8734351 | None:intergenic |
| TTATACTTGTCAATGGAACC+CGG | 0.562427 | 3:+8735347 | None:intergenic |
| GGTCAGATTGAAGAAGCATA+AGG | 0.562915 | 3:-8735063 | MsG0380011977.01.T01:CDS |
| TCACATAGTTGCAGCTGTAG+TGG | 0.565201 | 3:-8734135 | MsG0380011977.01.T01:CDS |
| GCATTTATAATAAGAGGGTG+TGG | 0.566087 | 3:+8733676 | None:intergenic |
| CTAAATGCTTGAAGTGGAGT+CGG | 0.566439 | 3:+8735170 | None:intergenic |
| GAGAAGTTATCGATAAAGCT+AGG | 0.566713 | 3:-8733840 | MsG0380011977.01.T01:CDS |
| GTTATAATTTATACCGGTCA+GGG | 0.567735 | 3:-8734612 | MsG0380011977.01.T01:CDS |
| ATTTCGGATGTCTAAGAGAG+TGG | 0.569188 | 3:+8734178 | None:intergenic |
| AAGCCGTTGGTTCATGAATG+TGG | 0.569854 | 3:-8734015 | MsG0380011977.01.T01:CDS |
| GAGGATCTCAATGACAATGA+TGG | 0.572099 | 3:-8735128 | MsG0380011977.01.T01:CDS |
| TATGCTTCTTCAATCTGACC+CGG | 0.573333 | 3:+8735066 | None:intergenic |
| TATGTTAACTCATGCATTGG+TGG | 0.574648 | 3:+8733523 | None:intergenic |
| TCGAACAAACACAGCGAAGA+GGG | 0.575127 | 3:-8734826 | MsG0380011977.01.T01:CDS |
| TTGCATATCCAGGGTGACCG+CGG | 0.575259 | 3:-8734702 | MsG0380011977.01.T01:CDS |
| GCCTAAGTTACTAGAAGAAG+CGG | 0.581948 | 3:-8733731 | MsG0380011977.01.T01:CDS |
| TTAAATCAGCTTGTACAAGA+AGG | 0.586118 | 3:-8733817 | MsG0380011977.01.T01:CDS |
| AACAGATTTCCAAACGGCAA+AGG | 0.589578 | 3:+8734335 | None:intergenic |
| GGGCTCCTAAATGCTTGAAG+TGG | 0.589829 | 3:+8735164 | None:intergenic |
| TGAATTGTATAATGGAAGAA+GGG | 0.593495 | 3:-8735394 | None:intergenic |
| AATGGAAGTGTTCAAAACAA+AGG | 0.598701 | 3:-8733929 | MsG0380011977.01.T01:CDS |
| CTTCTGAACAGATTTCCAAA+CGG | 0.599772 | 3:+8734329 | None:intergenic |
| TATACTTGTCAATGGAACCC+GGG | 0.600215 | 3:+8735348 | None:intergenic |
| TGACCTGAAGATTGACCTTG+AGG | 0.600787 | 3:+8735272 | None:intergenic |
| GAATAAGTCCAGTCCTTGCA+GGG | 0.601962 | 3:+8734292 | None:intergenic |
| AAGAGGGTAGGATCAGTACC+TGG | 0.602661 | 3:-8734810 | MsG0380011977.01.T01:CDS |
| GGTCACAAATGAGTCTAATG+AGG | 0.609516 | 3:-8733710 | MsG0380011977.01.T01:CDS |
| GGGCCACATTCATGAACCAA+CGG | 0.610204 | 3:+8734012 | None:intergenic |
| GTTTGCATGCTCAATCCATG+GGG | 0.610224 | 3:-8734737 | MsG0380011977.01.T01:CDS |
| TCTGGCGAATCGGAAGCCGT+TGG | 0.612003 | 3:-8734028 | MsG0380011977.01.T01:CDS |
| TTGCATGCTCAATCCATGGG+GGG | 0.612416 | 3:-8734735 | MsG0380011977.01.T01:CDS |
| TGCTAAGAATGTTGGAAATG+TGG | 0.613562 | 3:-8733656 | MsG0380011977.01.T01:CDS |
| GATGTTCATGTTGATATGAG+TGG | 0.616806 | 3:-8735032 | MsG0380011977.01.T01:CDS |
| AGCCCAGGTCAAAGAGACAA+TGG | 0.619161 | 3:-8734996 | MsG0380011977.01.T01:CDS |
| TAATTTATACCGGTCAGGGT+GGG | 0.620279 | 3:-8734608 | MsG0380011977.01.T01:CDS |
| TTAGGAAAACACTGACATGT+GGG | 0.620821 | 3:+8733991 | None:intergenic |
| AAGGGATACAGGAAGACTCT+CGG | 0.623134 | 3:+8734248 | None:intergenic |
| TACGACGATGAAGCTGAGGA+TGG | 0.627250 | 3:-8734639 | MsG0380011977.01.T01:CDS |
| ACCGCTTCTTCTAGTAACTT+AGG | 0.628944 | 3:+8733730 | None:intergenic |
| AGGAAGACTCTCGGCTCCCG+AGG | 0.629984 | 3:+8734257 | None:intergenic |
| GCGGTCACCCTGGATATGCA+AGG | 0.632039 | 3:+8734704 | None:intergenic |
| ACAAACACAGCGAAGAGGGT+AGG | 0.634440 | 3:-8734822 | MsG0380011977.01.T01:CDS |
| CTACAGCTGCAACTATGTGA+AGG | 0.634477 | 3:+8734138 | None:intergenic |
| ATACTTGTCAATGGAACCCG+GGG | 0.636158 | 3:+8735349 | None:intergenic |
| ATTGATGCCTTGCATATCCA+GGG | 0.637842 | 3:-8734711 | MsG0380011977.01.T01:CDS |
| GTTAGGAAAACACTGACATG+TGG | 0.639912 | 3:+8733990 | None:intergenic |
| AGAATACGACGATGAAGCTG+AGG | 0.645222 | 3:-8734643 | MsG0380011977.01.T01:CDS |
| TTCGAACAAACACAGCGAAG+AGG | 0.646517 | 3:-8734827 | MsG0380011977.01.T01:CDS |
| TTTGCATGCTCAATCCATGG+GGG | 0.646538 | 3:-8734736 | MsG0380011977.01.T01:CDS |
| AGATGCCAAGGAATTGAACA+CGG | 0.648462 | 3:-8734904 | MsG0380011977.01.T01:CDS |
| GAGGGTAGCAGTGCACGCAA+AGG | 0.654567 | 3:-8733478 | MsG0380011977.01.T01:CDS |
| TATGGTTCCGATCACACCGA+GGG | 0.656242 | 3:-8733496 | MsG0380011977.01.T01:CDS |
| AGTACCTGGAGTTGAGATTG+GGG | 0.657916 | 3:-8734796 | MsG0380011977.01.T01:CDS |
| TTTGCAGTTGAAGTATCATG+AGG | 0.660591 | 3:+8735209 | None:intergenic |
| ATAATTTATACCGGTCAGGG+TGG | 0.675305 | 3:-8734609 | MsG0380011977.01.T01:CDS |
| GATGCCAAGGAATTGAACAC+GGG | 0.677521 | 3:-8734903 | MsG0380011977.01.T01:CDS |
| TGTGGATCATCAAACTGCCG+CGG | 0.682422 | 3:-8733439 | MsG0380011977.01.T01:CDS |
| GTTATCGACTTCATTGACAA+GGG | 0.684235 | 3:+8734230 | None:intergenic |
| ATGAGCAGTCCAAATCGCCA+GGG | 0.685642 | 3:+8734097 | None:intergenic |
| TAGGAAAACACTGACATGTG+GGG | 0.688446 | 3:+8733992 | None:intergenic |
| GCATATCCAGGGTGACCGCG+GGG | 0.702296 | 3:-8734700 | MsG0380011977.01.T01:CDS |
| AATGTCAAGTAAAAGAACCG+CGG | 0.738828 | 3:+8733422 | None:intergenic |
| AATGAAATAAGAGTCATCCG+AGG | 0.740934 | 3:-8734501 | MsG0380011977.01.T01:CDS |
| CAGCCAAAGTATCTTCCCCG+CGG | 0.752822 | 3:+8734685 | None:intergenic |
| TTATGGTTCCGATCACACCG+AGG | 0.773964 | 3:-8733497 | MsG0380011977.01.T01:CDS |
| TACTTGTCAATGGAACCCGG+GGG | 0.840303 | 3:+8735350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTGAAAGATTCATAAATA+CGG | + | Chr3:8735048-8735067 | None:intergenic | 20.0% |
| !! | ATTATAAATGCTAAGAATGT+TGG | - | Chr3:8735145-8735164 | MsG0380011977.01.T01:CDS | 20.0% |
| !! | GTATAAAATTCAAGATTCAT+GGG | - | Chr3:8734382-8734401 | MsG0380011977.01.T01:CDS | 20.0% |
| !! | TCTTAGCATTTATAATAAGA+GGG | + | Chr3:8735141-8735160 | None:intergenic | 20.0% |
| !! | TGTATAAAATTCAAGATTCA+TGG | - | Chr3:8734381-8734400 | MsG0380011977.01.T01:CDS | 20.0% |
| !! | TTCTTAGCATTTATAATAAG+AGG | + | Chr3:8735142-8735161 | None:intergenic | 20.0% |
| ! | CATGAGTTAACATATGATTA+TGG | - | Chr3:8735295-8735314 | MsG0380011977.01.T01:CDS | 25.0% |
| ! | CTTGAAAGATTCATAAATAC+GGG | + | Chr3:8735047-8735066 | None:intergenic | 25.0% |
| ! | GGTGATGTTATAATTTATAC+CGG | - | Chr3:8734191-8734210 | MsG0380011977.01.T01:CDS | 25.0% |
| ! | GTATTTATGAATCTTTCAAG+TGG | - | Chr3:8735047-8735066 | MsG0380011977.01.T01:CDS | 25.0% |
| ! | TGCATTAAACTGAATGATTT+CGG | + | Chr3:8734650-8734669 | None:intergenic | 25.0% |
| !! | AATATTGCCAGCTTTTAAAT+CGG | + | Chr3:8733946-8733965 | None:intergenic | 25.0% |
| !! | AGAACTCCATTGATAATATA+CGG | + | Chr3:8734764-8734783 | None:intergenic | 25.0% |
| !! | GATTTTCCGTATATTATCAA+TGG | - | Chr3:8734755-8734774 | MsG0380011977.01.T01:CDS | 25.0% |
| AAAAAATGCAACATGGAGAA+AGG | + | Chr3:8735251-8735270 | None:intergenic | 30.0% | |
| AAAACAAAGGATAAAGGTTG+GGG | - | Chr3:8734893-8734912 | MsG0380011977.01.T01:CDS | 30.0% | |
| ACAGGTATCAAACTTCTTAT+AGG | + | Chr3:8733504-8733523 | None:intergenic | 30.0% | |
| AGAGTGGAAATATGTGAAAA+AGG | + | Chr3:8734618-8734637 | None:intergenic | 30.0% | |
| CAAAACAAAGGATAAAGGTT+GGG | - | Chr3:8734892-8734911 | MsG0380011977.01.T01:CDS | 30.0% | |
| CAGAATCTTATACTTGTCAA+TGG | + | Chr3:8733472-8733491 | None:intergenic | 30.0% | |
| CATTGACAAGTATAAGATTC+TGG | - | Chr3:8733470-8733489 | MsG0380011977.01.T01:CDS | 30.0% | |
| GCAAAAATCTATGTCTATGA+TGG | - | Chr3:8734356-8734375 | MsG0380011977.01.T01:CDS | 30.0% | |
| GCACAATATTAACAACTTCA+CGG | + | Chr3:8733842-8733861 | None:intergenic | 30.0% | |
| GTATATTATCAATGGAGTTC+TGG | - | Chr3:8734763-8734782 | MsG0380011977.01.T01:CDS | 30.0% | |
| GTGTTCAAAACAAAGGATAA+AGG | - | Chr3:8734887-8734906 | MsG0380011977.01.T01:CDS | 30.0% | |
| GTTATAATTTATACCGGTCA+GGG | - | Chr3:8734197-8734216 | MsG0380011977.01.T01:CDS | 30.0% | |
| TCAAAACAAAGGATAAAGGT+TGG | - | Chr3:8734891-8734910 | MsG0380011977.01.T01:CDS | 30.0% | |
| TCAATGCAAAAAATGCAACA+TGG | + | Chr3:8735258-8735277 | None:intergenic | 30.0% | |
| TCATATGTTAACTCATGCAT+TGG | + | Chr3:8735292-8735311 | None:intergenic | 30.0% | |
| TGTTATAATTTATACCGGTC+AGG | - | Chr3:8734196-8734215 | MsG0380011977.01.T01:CDS | 30.0% | |
| TTAAATCAGCTTGTACAAGA+AGG | - | Chr3:8734992-8735011 | MsG0380011977.01.T01:CDS | 30.0% | |
| TTGTTCTCTTCATATAAGAC+AGG | + | Chr3:8735223-8735242 | None:intergenic | 30.0% | |
| ! | TTTTAGCAACAAAAGAAGTG+CGG | - | Chr3:8733704-8733723 | MsG0380011977.01.T01:CDS | 30.0% |
| !! | AATGGAAGTGTTCAAAACAA+AGG | - | Chr3:8734880-8734899 | MsG0380011977.01.T01:CDS | 30.0% |
| !! | TTTTCTCCATTTTTCCCATT+TGG | - | Chr3:8733573-8733592 | MsG0380011977.01.T01:CDS | 30.0% |
| !!! | GTTTGATACCTGTTTTTTCA+AGG | - | Chr3:8733511-8733530 | MsG0380011977.01.T01:CDS | 30.0% |
| !!! | TTGTTTTGAACACTTCCATT+TGG | + | Chr3:8734880-8734899 | None:intergenic | 30.0% |
| AAAAATCGAGTATCCCAAAC+CGG | - | Chr3:8734845-8734864 | MsG0380011977.01.T01:CDS | 35.0% | |
| AAAAATGGAGAAAACCCAGA+AGG | + | Chr3:8733567-8733586 | None:intergenic | 35.0% | |
| AATGAAATAAGAGTCATCCG+AGG | - | Chr3:8734308-8734327 | MsG0380011977.01.T01:CDS | 35.0% | |
| CGAATGGAAATGTGTGTTAT+CGG | - | Chr3:8734050-8734069 | MsG0380011977.01.T01:CDS | 35.0% | |
| CGATAACACACATTTCCATT+CGG | + | Chr3:8734052-8734071 | None:intergenic | 35.0% | |
| CTTCTGAACAGATTTCCAAA+CGG | + | Chr3:8734483-8734502 | None:intergenic | 35.0% | |
| GAGAAGTTATCGATAAAGCT+AGG | - | Chr3:8734969-8734988 | MsG0380011977.01.T01:CDS | 35.0% | |
| GATGTTCATGTTGATATGAG+TGG | - | Chr3:8733777-8733796 | MsG0380011977.01.T01:CDS | 35.0% | |
| GCATTTATAATAAGAGGGTG+TGG | + | Chr3:8735136-8735155 | None:intergenic | 35.0% | |
| GGCAATATTTGTATGACCAA+AGG | - | Chr3:8733957-8733976 | MsG0380011977.01.T01:CDS | 35.0% | |
| GGTAGAAAGAAATGCTTATG+TGG | - | Chr3:8735352-8735371 | MsG0380011977.01.T01:CDS | 35.0% | |
| GTTGATATGAGTGGTTTAGT+TGG | - | Chr3:8733786-8733805 | MsG0380011977.01.T01:CDS | 35.0% | |
| TATGTTAACTCATGCATTGG+TGG | + | Chr3:8735289-8735308 | None:intergenic | 35.0% | |
| TCAGATCAGAAGCTTCATAA+GGG | - | Chr3:8734251-8734270 | MsG0380011977.01.T01:CDS | 35.0% | |
| TCATAAGGGTAATCTTGCTT+TGG | - | Chr3:8734265-8734284 | MsG0380011977.01.T01:CDS | 35.0% | |
| TGAGGATTCCTTGAAAAAAC+AGG | + | Chr3:8733522-8733541 | None:intergenic | 35.0% | |
| TGCTAAGAATGTTGGAAATG+TGG | - | Chr3:8735153-8735172 | MsG0380011977.01.T01:CDS | 35.0% | |
| TGGAAATATGTGAAAAAGGC+AGG | + | Chr3:8734614-8734633 | None:intergenic | 35.0% | |
| TGTGTTTGTTCGAATTCCTT+TGG | + | Chr3:8733976-8733995 | None:intergenic | 35.0% | |
| TTAGGAAAACACTGACATGT+GGG | + | Chr3:8734821-8734840 | None:intergenic | 35.0% | |
| TTATACTTGTCAATGGAACC+CGG | + | Chr3:8733465-8733484 | None:intergenic | 35.0% | |
| TTTGGAAATCTGTTCAGAAG+TGG | - | Chr3:8734483-8734502 | MsG0380011977.01.T01:CDS | 35.0% | |
| ! | ATGTTAACTCATGCATTGGT+GGG | + | Chr3:8735288-8735307 | None:intergenic | 35.0% |
| ! | GATACTCGATTTTTGCAGTT+AGG | + | Chr3:8734839-8734858 | None:intergenic | 35.0% |
| ! | GGACATTTTCTTTTTCCGAA+TGG | - | Chr3:8734034-8734053 | MsG0380011977.01.T01:CDS | 35.0% |
| ! | TAGACATAGATTTTTGCACC+TGG | + | Chr3:8734353-8734372 | None:intergenic | 35.0% |
| ! | TCATGGGTTGAAAAAGCAAA+AGG | - | Chr3:8734398-8734417 | MsG0380011977.01.T01:CDS | 35.0% |
| ! | TTTGCAGTTGAAGTATCATG+AGG | + | Chr3:8733603-8733622 | None:intergenic | 35.0% |
| !! | AAACGTACCGATTTAAAAGC+TGG | - | Chr3:8733936-8733955 | MsG0380011977.01.T01:CDS | 35.0% |
| !! | GTTATCGACTTCATTGACAA+GGG | + | Chr3:8734582-8734601 | None:intergenic | 35.0% |
| !! | TATAAGTTGATAAGAGTGCC+TGG | - | Chr3:8734440-8734459 | MsG0380011977.01.T01:CDS | 35.0% |
| !!! | GTTTTTTCAAGGAATCCTCA+AGG | - | Chr3:8733522-8733541 | MsG0380011977.01.T01:CDS | 35.0% |
| AACAGATTTCCAAACGGCAA+AGG | + | Chr3:8734477-8734496 | None:intergenic | 40.0% | |
| AATCCTCAAGGTCAATCTTC+AGG | - | Chr3:8733534-8733553 | MsG0380011977.01.T01:CDS | 40.0% | |
| ACCGCTTCTTCTAGTAACTT+AGG | + | Chr3:8735082-8735101 | None:intergenic | 40.0% | |
| ACTTCATTGACAAGGGATAC+AGG | + | Chr3:8734575-8734594 | None:intergenic | 40.0% | |
| AGATGCCAAGGAATTGAACA+CGG | - | Chr3:8733905-8733924 | MsG0380011977.01.T01:CDS | 40.0% | |
| ATAATTTATACCGGTCAGGG+TGG | - | Chr3:8734200-8734219 | MsG0380011977.01.T01:CDS | 40.0% | |
| ATCTCAACTTGTAGATGCCA+AGG | - | Chr3:8733893-8733912 | MsG0380011977.01.T01:CDS | 40.0% | |
| ATGCAACATGGAGAAAGGAT+TGG | + | Chr3:8735246-8735265 | None:intergenic | 40.0% | |
| ATTGATGCCTTGCATATCCA+GGG | - | Chr3:8734098-8734117 | MsG0380011977.01.T01:CDS | 40.0% | |
| ATTTCGGATGTCTAAGAGAG+TGG | + | Chr3:8734634-8734653 | None:intergenic | 40.0% | |
| ATTTGGACTGCTCATGCATT+CGG | - | Chr3:8734720-8734739 | MsG0380011977.01.T01:CDS | 40.0% | |
| CATTTGATGCGCTAAGAAGA+AGG | - | Chr3:8733868-8733887 | MsG0380011977.01.T01:CDS | 40.0% | |
| CTAAATGCTTGAAGTGGAGT+CGG | + | Chr3:8733642-8733661 | None:intergenic | 40.0% | |
| GAGGATCTCAATGACAATGA+TGG | - | Chr3:8733681-8733700 | MsG0380011977.01.T01:CDS | 40.0% | |
| GCCTAAGTTACTAGAAGAAG+CGG | - | Chr3:8735078-8735097 | MsG0380011977.01.T01:CDS | 40.0% | |
| GGTCACAAATGAGTCTAATG+AGG | - | Chr3:8735099-8735118 | MsG0380011977.01.T01:CDS | 40.0% | |
| GTCAGATCAGAAGCTTCATA+AGG | - | Chr3:8734250-8734269 | MsG0380011977.01.T01:CDS | 40.0% | |
| GTTAGGAAAACACTGACATG+TGG | + | Chr3:8734822-8734841 | None:intergenic | 40.0% | |
| GTTGAAAAAGCAAAAGGAGG+TGG | - | Chr3:8734404-8734423 | MsG0380011977.01.T01:CDS | 40.0% | |
| TAATTTATACCGGTCAGGGT+GGG | - | Chr3:8734201-8734220 | MsG0380011977.01.T01:CDS | 40.0% | |
| TACCATTGTCTCTTTGACCT+GGG | + | Chr3:8733818-8733837 | None:intergenic | 40.0% | |
| TAGGAAAACACTGACATGTG+GGG | + | Chr3:8734820-8734839 | None:intergenic | 40.0% | |
| TATACTTGTCAATGGAACCC+GGG | + | Chr3:8733464-8733483 | None:intergenic | 40.0% | |
| TATCATGAGGTCCACCAAAT+GGG | + | Chr3:8733590-8733609 | None:intergenic | 40.0% | |
| TATGCTTCTTCAATCTGACC+CGG | + | Chr3:8733746-8733765 | None:intergenic | 40.0% | |
| TCATGCATTCGGAGAAATGA+AGG | - | Chr3:8734731-8734750 | MsG0380011977.01.T01:CDS | 40.0% | |
| TTACCATTGTCTCTTTGACC+TGG | + | Chr3:8733819-8733838 | None:intergenic | 40.0% | |
| ! | GGTCAGATTGAAGAAGCATA+AGG | - | Chr3:8733746-8733765 | MsG0380011977.01.T01:CDS | 40.0% |
| ! | GTTGCTCTCCAAATGTTTTC+TGG | - | Chr3:8735194-8735213 | MsG0380011977.01.T01:CDS | 40.0% |
| ! | TGGGTTGAAAAAGCAAAAGG+AGG | - | Chr3:8734401-8734420 | MsG0380011977.01.T01:CDS | 40.0% |
| !! | ATAAAAGCACCAGCACGAAT+AGG | + | Chr3:8734935-8734954 | None:intergenic | 40.0% |
| !! | CGTTATCGACTTCATTGACA+AGG | + | Chr3:8734583-8734602 | None:intergenic | 40.0% |
| !! | GCTTTTATTTGCGAGTATGC+AGG | - | Chr3:8734947-8734966 | MsG0380011977.01.T01:CDS | 40.0% |
| !! | TCTCCATTTTTCCCATTTGG+TGG | - | Chr3:8733576-8733595 | MsG0380011977.01.T01:CDS | 40.0% |
| !! | TTCCATTTGGTGCTTCAAAC+CGG | + | Chr3:8734867-8734886 | None:intergenic | 40.0% |
| AAGGGATACAGGAAGACTCT+CGG | + | Chr3:8734564-8734583 | None:intergenic | 45.0% | |
| ACAGGCTGCCAGAAAACATT+TGG | + | Chr3:8735205-8735224 | None:intergenic | 45.0% | |
| AGAATAAGTCCAGTCCTTGC+AGG | + | Chr3:8734521-8734540 | None:intergenic | 45.0% | |
| AGAATACGACGATGAAGCTG+AGG | - | Chr3:8734166-8734185 | MsG0380011977.01.T01:CDS | 45.0% | |
| AGATCCTCATCCTCTCCAAA+AGG | + | Chr3:8733669-8733688 | None:intergenic | 45.0% | |
| AGGATAAAGGTTGGGGTCTT+CGG | - | Chr3:8734900-8734919 | MsG0380011977.01.T01:CDS | 45.0% | |
| AGTACCTGGAGTTGAGATTG+GGG | - | Chr3:8734013-8734032 | MsG0380011977.01.T01:CDS | 45.0% | |
| ATACTTGTCAATGGAACCCG+GGG | + | Chr3:8733463-8733482 | None:intergenic | 45.0% | |
| ATCAAAGATGCTGTGACTCC+AGG | - | Chr3:8734332-8734351 | MsG0380011977.01.T01:CDS | 45.0% | |
| CAGTACCTGGAGTTGAGATT+GGG | - | Chr3:8734012-8734031 | MsG0380011977.01.T01:CDS | 45.0% | |
| CGACTCCACTTCAAGCATTT+AGG | - | Chr3:8733640-8733659 | MsG0380011977.01.T01:CDS | 45.0% | |
| CTACAGCTGCAACTATGTGA+AGG | + | Chr3:8734674-8734693 | None:intergenic | 45.0% | |
| CTTCAGGTCAGTATCCTTCT+GGG | - | Chr3:8733550-8733569 | MsG0380011977.01.T01:CDS | 45.0% | |
| GAAAAAGCAAAAGGAGGTGG+TGG | - | Chr3:8734407-8734426 | MsG0380011977.01.T01:CDS | 45.0% | |
| GAATAAGTCCAGTCCTTGCA+GGG | + | Chr3:8734520-8734539 | None:intergenic | 45.0% | |
| GATCCTCATCCTCTCCAAAA+GGG | + | Chr3:8733668-8733687 | None:intergenic | 45.0% | |
| GATGCCAAGGAATTGAACAC+GGG | - | Chr3:8733906-8733925 | MsG0380011977.01.T01:CDS | 45.0% | |
| GATTGATGCCTTGCATATCC+AGG | - | Chr3:8734097-8734116 | MsG0380011977.01.T01:CDS | 45.0% | |
| GCTGTTAGCATTGTTTCGTC+AGG | - | Chr3:8734143-8734162 | MsG0380011977.01.T01:CDS | 45.0% | |
| GGTCCACCAAATGGGAAAAA+TGG | + | Chr3:8733582-8733601 | None:intergenic | 45.0% | |
| GGTTTGCATGCTCAATCCAT+GGG | - | Chr3:8734071-8734090 | MsG0380011977.01.T01:CDS | 45.0% | |
| GTATCATGAGGTCCACCAAA+TGG | + | Chr3:8733591-8733610 | None:intergenic | 45.0% | |
| GTTTGCATGCTCAATCCATG+GGG | - | Chr3:8734072-8734091 | MsG0380011977.01.T01:CDS | 45.0% | |
| TATTCTTGCTGACCTCTCCT+CGG | - | Chr3:8734535-8734554 | MsG0380011977.01.T01:CDS | 45.0% | |
| TCACAGCATCTTTGATGCCT+CGG | + | Chr3:8734328-8734347 | None:intergenic | 45.0% | |
| TCACATAGTTGCAGCTGTAG+TGG | - | Chr3:8734674-8734693 | MsG0380011977.01.T01:CDS | 45.0% | |
| TCAGTACCTGGAGTTGAGAT+TGG | - | Chr3:8734011-8734030 | MsG0380011977.01.T01:CDS | 45.0% | |
| TCGAACAAACACAGCGAAGA+GGG | - | Chr3:8733983-8734002 | MsG0380011977.01.T01:CDS | 45.0% | |
| TCTGTTCAGAAGTGGAAAGC+TGG | - | Chr3:8734491-8734510 | MsG0380011977.01.T01:CDS | 45.0% | |
| TCTTCAGGTCAGTATCCTTC+TGG | - | Chr3:8733549-8733568 | MsG0380011977.01.T01:CDS | 45.0% | |
| TGACCTGAAGATTGACCTTG+AGG | + | Chr3:8733540-8733559 | None:intergenic | 45.0% | |
| TTCGAACAAACACAGCGAAG+AGG | - | Chr3:8733982-8734001 | MsG0380011977.01.T01:CDS | 45.0% | |
| TTTGCATGCTCAATCCATGG+GGG | - | Chr3:8734073-8734092 | MsG0380011977.01.T01:CDS | 45.0% | |
| ! | CAAGCATTTAGGAGCCCTTT+TGG | - | Chr3:8733651-8733670 | MsG0380011977.01.T01:CDS | 45.0% |
| ! | GGTAAAAAAGCATGTGTCCC+TGG | - | Chr3:8734695-8734714 | MsG0380011977.01.T01:CDS | 45.0% |
| ! | GGTTTAGTTGGTATAAGCCC+AGG | - | Chr3:8733798-8733817 | MsG0380011977.01.T01:CDS | 45.0% |
| ! | TCAATGGAGTTCTGGCGAAT+CGG | - | Chr3:8734771-8734790 | MsG0380011977.01.T01:CDS | 45.0% |
| ! | TTGGTGCTTCAAACCGGTTT+GGG | + | Chr3:8734861-8734880 | None:intergenic | 45.0% |
| !! | AACCGGTTTGAAGCACCAAA+TGG | - | Chr3:8734862-8734881 | MsG0380011977.01.T01:CDS | 45.0% |
| !! | AAGCCGTTGGTTCATGAATG+TGG | - | Chr3:8734794-8734813 | MsG0380011977.01.T01:CDS | 45.0% |
| !! | ATTTAGGAGCCCTTTTGGAG+AGG | - | Chr3:8733656-8733675 | MsG0380011977.01.T01:CDS | 45.0% |
| !! | TTTGGTGCTTCAAACCGGTT+TGG | + | Chr3:8734862-8734881 | None:intergenic | 45.0% |
| AACCTAGTGCCTTTGCCGTT+TGG | - | Chr3:8734465-8734484 | MsG0380011977.01.T01:CDS | 50.0% | |
| AAGAGGGTAGGATCAGTACC+TGG | - | Chr3:8733999-8734018 | MsG0380011977.01.T01:CDS | 50.0% | |
| ACAAACACAGCGAAGAGGGT+AGG | - | Chr3:8733987-8734006 | MsG0380011977.01.T01:CDS | 50.0% | |
| AGCCCAGGTCAAAGAGACAA+TGG | - | Chr3:8733813-8733832 | MsG0380011977.01.T01:CDS | 50.0% | |
| ATGAGCAGTCCAAATCGCCA+GGG | + | Chr3:8734715-8734734 | None:intergenic | 50.0% | |
| ATGTCCCCAATCTCAACTCC+AGG | + | Chr3:8734020-8734039 | None:intergenic | 50.0% | |
| ATTCTTGCTGACCTCTCCTC+GGG | - | Chr3:8734536-8734555 | MsG0380011977.01.T01:CDS | 50.0% | |
| CGAACCCGTGTTCAATTCCT+TGG | + | Chr3:8733913-8733932 | None:intergenic | 50.0% | |
| CGGTTTGCATGCTCAATCCA+TGG | - | Chr3:8734070-8734089 | MsG0380011977.01.T01:CDS | 50.0% | |
| GGGCCACATTCATGAACCAA+CGG | + | Chr3:8734800-8734819 | None:intergenic | 50.0% | |
| GGGCTCCTAAATGCTTGAAG+TGG | + | Chr3:8733648-8733667 | None:intergenic | 50.0% | |
| GTTGAAATTCCCACCCTGAC+CGG | + | Chr3:8734213-8734232 | None:intergenic | 50.0% | |
| TACGACGATGAAGCTGAGGA+TGG | - | Chr3:8734170-8734189 | MsG0380011977.01.T01:CDS | 50.0% | |
| TACTTGTCAATGGAACCCGG+GGG | + | Chr3:8733462-8733481 | None:intergenic | 50.0% | |
| TATGGTTCCGATCACACCGA+GGG | - | Chr3:8735313-8735332 | MsG0380011977.01.T01:CDS | 50.0% | |
| TCATGGGATCCTATTCGTGC+TGG | - | Chr3:8734923-8734942 | MsG0380011977.01.T01:CDS | 50.0% | |
| TGTGGATCATCAAACTGCCG+CGG | - | Chr3:8735370-8735389 | MsG0380011977.01.T01:CDS | 50.0% | |
| TTATGGTTCCGATCACACCG+AGG | - | Chr3:8735312-8735331 | MsG0380011977.01.T01:CDS | 50.0% | |
| TTGCATGCTCAATCCATGGG+GGG | - | Chr3:8734074-8734093 | MsG0380011977.01.T01:CDS | 50.0% | |
| !! | TTCCAAACGGCAAAGGCACT+AGG | + | Chr3:8734470-8734489 | None:intergenic | 50.0% |
| AAGGTTGGGGTCTTCGGTCA+TGG | - | Chr3:8734906-8734925 | MsG0380011977.01.T01:CDS | 55.0% | |
| AGCATGTGTCCCTGGCGATT+TGG | - | Chr3:8734703-8734722 | MsG0380011977.01.T01:CDS | 55.0% | |
| AGGTTGGGGTCTTCGGTCAT+GGG | - | Chr3:8734907-8734926 | MsG0380011977.01.T01:CDS | 55.0% | |
| CATGAGCAGTCCAAATCGCC+AGG | + | Chr3:8734716-8734735 | None:intergenic | 55.0% | |
| CGGCAGCATCACATTCAAGC+CGG | - | Chr3:8733724-8733743 | MsG0380011977.01.T01:CDS | 55.0% | |
| GGAGTCGGCATCACTCTACT+TGG | + | Chr3:8733627-8733646 | None:intergenic | 55.0% | |
| GGCAGCATCACATTCAAGCC+GGG | - | Chr3:8733725-8733744 | MsG0380011977.01.T01:CDS | 55.0% | |
| TCAACACTCAGTTCCTCCCC+CGG | - | Chr3:8733443-8733462 | MsG0380011977.01.T01:CDS | 55.0% | |
| TGACCGCGGGGAAGATACTT+TGG | - | Chr3:8734121-8734140 | MsG0380011977.01.T01:CDS | 55.0% | |
| TGCATGCTCAATCCATGGGG+GGG | - | Chr3:8734075-8734094 | MsG0380011977.01.T01:CDS | 55.0% | |
| TTGCATATCCAGGGTGACCG+CGG | - | Chr3:8734107-8734126 | MsG0380011977.01.T01:CDS | 55.0% | |
| TTTGCGTGCACTGCTACCCT+CGG | + | Chr3:8735332-8735351 | None:intergenic | 55.0% | |
| ! | ACTGCTACCCTCGGTGTGAT+CGG | + | Chr3:8735323-8735342 | None:intergenic | 55.0% |
| ! | CAGCCAAAGTATCTTCCCCG+CGG | + | Chr3:8734127-8734146 | None:intergenic | 55.0% |
| ! | GGAAAGCTGGTTTCCCTGCA+AGG | - | Chr3:8734504-8734523 | MsG0380011977.01.T01:CDS | 55.0% |
| !! | GAGCCCTTTTGGAGAGGATG+AGG | - | Chr3:8733662-8733681 | MsG0380011977.01.T01:CDS | 55.0% |
| !! | GCAAAGGCACTAGGTTGTCC+AGG | + | Chr3:8734461-8734480 | None:intergenic | 55.0% |
| CAACACTCAGTTCCTCCCCC+GGG | - | Chr3:8733444-8733463 | MsG0380011977.01.T01:CDS | 60.0% | |
| GAGGGTAGCAGTGCACGCAA+AGG | - | Chr3:8735331-8735350 | MsG0380011977.01.T01:CDS | 60.0% | |
| GCGGTCACCCTGGATATGCA+AGG | + | Chr3:8734108-8734127 | None:intergenic | 60.0% | |
| TCTGGCGAATCGGAAGCCGT+TGG | - | Chr3:8734781-8734800 | MsG0380011977.01.T01:CDS | 60.0% | |
| TGCATATCCAGGGTGACCGC+GGG | - | Chr3:8734108-8734127 | MsG0380011977.01.T01:CDS | 60.0% | |
| TTGTCAATGGAACCCGGGGG+AGG | + | Chr3:8733459-8733478 | None:intergenic | 60.0% | |
| ! | CAAGGCATCAATCCCCCCCA+TGG | + | Chr3:8734090-8734109 | None:intergenic | 60.0% |
| ! | GCTGGTTTCCCTGCAAGGAC+TGG | - | Chr3:8734509-8734528 | MsG0380011977.01.T01:CDS | 60.0% |
| AGGAAGACTCTCGGCTCCCG+AGG | + | Chr3:8734555-8734574 | None:intergenic | 65.0% | |
| GCATATCCAGGGTGACCGCG+GGG | - | Chr3:8734109-8734128 | MsG0380011977.01.T01:CDS | 65.0% | |
| TATCTTCCCCGCGGTCACCC+TGG | + | Chr3:8734118-8734137 | None:intergenic | 65.0% | |
| GACTCTCGGCTCCCGAGGAG+AGG | + | Chr3:8734550-8734569 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 8733426 | 8735405 | 8733426 | ID=MsG0380011977.01;Name=MsG0380011977.01 |
| Chr3 | mRNA | 8733426 | 8735405 | 8733426 | ID=MsG0380011977.01.T01;Parent=MsG0380011977.01;Name=MsG0380011977.01.T01;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|659 |
| Chr3 | exon | 8733426 | 8735405 | 8733426 | ID=MsG0380011977.01.T01:exon:2694;Parent=MsG0380011977.01.T01 |
| Chr3 | CDS | 8733426 | 8735405 | 8733426 | ID=MsG0380011977.01.T01:cds;Parent=MsG0380011977.01.T01 |
| Gene Sequence |
| Protein sequence |
