AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011990.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011990.01.T01 MTR_7g007850 91.254 343 20 1 50 392 85 417 0.0 567
MsG0380011990.01.T01 MTR_7g007850 91.254 343 20 1 50 392 85 417 0.0 566
MsG0380011990.01.T01 MTR_7g007850 91.254 343 20 1 50 392 85 417 0.0 564
MsG0380011990.01.T01 MTR_7g007850 91.254 343 20 1 50 392 85 417 0.0 564
MsG0380011990.01.T01 MTR_6g027680 33.718 347 209 4 50 390 83 414 2.44e-57 197
MsG0380011990.01.T01 MTR_6g027660 32.277 347 214 4 50 390 81 412 2.87e-55 192
MsG0380011990.01.T01 MTR_6g027650 33.141 347 211 4 50 390 73 404 3.52e-54 189
MsG0380011990.01.T01 MTR_7g086510 35.159 347 204 4 50 390 75 406 5.78e-54 189
MsG0380011990.01.T01 MTR_6g027630 33.141 347 211 4 50 390 80 411 2.34e-53 186
MsG0380011990.01.T01 MTR_6g027630 33.141 347 211 4 50 390 80 411 6.07e-53 186
MsG0380011990.01.T01 MTR_6g027630 32.743 339 207 4 58 390 3 326 3.14e-51 180
MsG0380011990.01.T01 MTR_7g086610 33.425 362 211 6 50 398 69 413 1.09e-50 180
MsG0380011990.01.T01 MTR_1g030660 30.925 346 209 7 50 388 104 426 4.89e-44 161
MsG0380011990.01.T01 MTR_8g089360 31.858 339 215 6 50 388 97 419 2.88e-42 156
MsG0380011990.01.T01 MTR_8g089360 31.858 339 215 6 50 388 114 436 3.59e-42 156
MsG0380011990.01.T01 MTR_2g035430 30.904 343 215 9 49 388 108 431 1.15e-40 152
MsG0380011990.01.T01 MTR_1g111740 31.250 352 209 8 50 388 87 418 1.29e-40 152
MsG0380011990.01.T01 MTR_8g089320 29.499 339 223 7 50 388 109 431 7.84e-40 150
MsG0380011990.01.T01 MTR_4g099270 33.815 346 205 10 50 389 59 386 2.44e-36 139
MsG0380011990.01.T01 MTR_8g461380 30.612 343 214 7 50 388 116 438 7.24e-36 139
MsG0380011990.01.T01 MTR_4g099270 33.750 320 190 8 50 364 80 382 8.99e-35 132
MsG0380011990.01.T01 MTR_8g089340 27.208 283 191 4 93 375 3 270 1.23e-28 117
MsG0380011990.01.T01 MTR_4g099270 34.021 291 169 9 105 389 1 274 2.45e-27 113
MsG0380011990.01.T01 MTR_6g027670 36.923 130 82 0 261 390 16 145 7.08e-22 95.5
MsG0380011990.01.T01 MTR_4g099270 33.471 242 139 8 50 286 80 304 2.37e-19 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011990.01.T01 AT1G05940 63.476 397 121 3 10 392 31 417 4.89e-162 465
MsG0380011990.01.T01 AT1G05940 63.476 397 121 3 10 392 31 417 3.34e-161 464
MsG0380011990.01.T01 AT1G05940 63.476 397 121 3 10 392 31 417 1.95e-160 463
MsG0380011990.01.T01 AT1G05940 69.256 309 84 2 85 392 1 299 9.73e-140 406
MsG0380011990.01.T01 AT3G03720 33.718 347 209 4 50 390 61 392 1.20e-60 206
MsG0380011990.01.T01 AT5G36940 34.006 347 208 4 50 390 66 397 9.23e-54 188
MsG0380011990.01.T01 AT1G58030 31.579 361 219 6 50 398 77 421 7.08e-53 186
MsG0380011990.01.T01 AT3G10600 32.011 353 214 7 46 388 89 425 5.15e-47 169
MsG0380011990.01.T01 AT4G21120 30.029 343 216 6 50 388 107 429 1.26e-45 166
MsG0380011990.01.T01 AT2G34960 29.942 344 214 5 50 388 101 422 2.83e-43 159
MsG0380011990.01.T01 AT5G04770 31.339 351 211 7 50 388 94 426 4.47e-41 153
MsG0380011990.01.T01 AT4G21120 29.352 293 192 3 96 388 2 279 2.03e-38 144
MsG0380011990.01.T01 AT5G04770 31.595 326 193 7 50 363 94 401 7.25e-38 141
MsG0380011990.01.T01 AT1G17120 29.738 343 217 7 50 388 118 440 1.14e-37 144
MsG0380011990.01.T01 AT3G10600 32.313 294 174 6 105 388 1 279 4.00e-37 140
MsG0380011990.01.T01 AT5G04770 31.081 296 175 6 105 388 1 279 8.00e-32 125

Find 87 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATGTTATCTTTGAAAAT+AGG 0.123163 3:+8972012 None:intergenic
CCCCTCTTCATTCTCAGATT+TGG 0.162253 3:-8970819 MsG0380011990.01.T01:CDS
CCCTCTTCATTCTCAGATTT+GGG 0.191090 3:-8970818 MsG0380011990.01.T01:CDS
CCAAACTTTGTGGCTTATTC+TGG 0.202592 3:-8972292 MsG0380011990.01.T01:CDS
AGACCATGTCCAATCCATTT+TGG 0.214181 3:+8971991 None:intergenic
TGAAGAGGGGTGTGGCATTT+GGG 0.250503 3:+8970832 None:intergenic
ATGAAGAGGGGTGTGGCATT+TGG 0.261358 3:+8970831 None:intergenic
GTGAGAAGTATTAGTAGAAT+TGG 0.278574 3:+8971931 None:intergenic
TAATGCTTGACTATCATATT+GGG 0.287047 3:-8972092 MsG0380011990.01.T01:CDS
GTTATTGTTGTCATCTTTGC+TGG 0.287928 3:-8971733 MsG0380011990.01.T01:CDS
TTAATGCTTGACTATCATAT+TGG 0.288983 3:-8972093 MsG0380011990.01.T01:CDS
ATTAGCATTGGTGCTATTGC+TGG 0.302863 3:-8971046 MsG0380011990.01.T01:CDS
CTTAGATTCTTCAGCAGAAT+TGG 0.303211 3:+8971597 None:intergenic
CCAGAATAAGCCACAAAGTT+TGG 0.309755 3:+8972292 None:intergenic
TCAAAGATAACATTCCAAAA+TGG 0.317534 3:-8972005 MsG0380011990.01.T01:CDS
GGAGTATGCTTGGTGATTAC+TGG 0.320177 3:-8971154 MsG0380011990.01.T01:CDS
GGTATAAGACCCGTCTTTAC+AGG 0.324045 3:-8971664 MsG0380011990.01.T01:CDS
CCTTGTTGGTTTCTATGTTC+AGG 0.333305 3:-8971008 MsG0380011990.01.T01:intron
GAATGTTATCTTTGAAAATA+GGG 0.361298 3:+8972013 None:intergenic
TGGATGTGTTGCCAGCATTA+TGG 0.363040 3:-8970794 MsG0380011990.01.T01:CDS
TGTTACAGCTCCAAACTTTG+TGG 0.372074 3:-8972302 MsG0380011990.01.T01:intron
TCTCGATTTCCTGCTGTTGT+TGG 0.376719 3:-8972180 MsG0380011990.01.T01:CDS
CGATTTCCTGCTGTTGTTGG+AGG 0.386552 3:-8972177 MsG0380011990.01.T01:CDS
CTTCATTCTCAGATTTGGGT+TGG 0.391509 3:-8970814 MsG0380011990.01.T01:CDS
AATTGGAGCCAAGGCATTGA+TGG 0.401453 3:+8971948 None:intergenic
AAGACGGGTCTTATACCATT+TGG 0.403482 3:+8971670 None:intergenic
ATGGTTCCATACAGTCTTCT+AGG 0.408151 3:-8971130 MsG0380011990.01.T01:CDS
TGGTCTTCGTTTGTTCCAAA+TGG 0.422620 3:-8971685 MsG0380011990.01.T01:CDS
GGCTATATCTTGGACTTGGC+AGG 0.423128 3:-8970891 MsG0380011990.01.T01:CDS
TTGAGGTTGATGTTTCCAAC+TGG 0.433700 3:-8971705 MsG0380011990.01.T01:CDS
ATAGTCTTCTTTGCGTATGT+TGG 0.434035 3:-8971634 MsG0380011990.01.T01:CDS
GAGCAGTCTCGGCTATATCT+TGG 0.442697 3:-8970901 MsG0380011990.01.T01:intron
CTCACTATAATTCTCTGTCT+TGG 0.443992 3:-8971913 MsG0380011990.01.T01:CDS
GTTTCTATTCTGATTAGCAT+TGG 0.444221 3:-8971058 MsG0380011990.01.T01:CDS
CTTACAACAGCACTCCTTGT+TGG 0.455936 3:-8971022 MsG0380011990.01.T01:CDS
AGCGTATCTATATACATATA+CGG 0.465929 3:-8972154 MsG0380011990.01.T01:CDS
ATCGGCAGTGAATTCATTCA+TGG 0.467785 3:-8971878 MsG0380011990.01.T01:CDS
TGAACTTTAGCAAATATTGC+GGG 0.468776 3:+8970856 None:intergenic
TATCTTGGACTTGGCAGGGA+TGG 0.469596 3:-8970886 MsG0380011990.01.T01:CDS
GATTTAAAAGCTTCAGTCAA+AGG 0.469932 3:+8971097 None:intergenic
TGTGTTGCCAGCATTATGGC+TGG 0.474313 3:-8970790 MsG0380011990.01.T01:CDS
GAAGAGGGGTGTGGCATTTG+GGG 0.479208 3:+8970833 None:intergenic
GATAACATTCCAAAATGGAT+TGG 0.488211 3:-8972000 MsG0380011990.01.T01:CDS
CAACCACCTCGATCGAGAAT+CGG 0.490780 3:-8973875 MsG0380011990.01.T01:CDS
ACTCGTCTGTCGATTGAAGC+TGG 0.494300 3:-8973848 MsG0380011990.01.T01:CDS
TCTTCTCCTAGAAGACTGTA+TGG 0.498213 3:+8971124 None:intergenic
TCGTCGATTGAAGCTGGAAC+CGG 0.507907 3:-8973822 MsG0380011990.01.T01:intron
TTAGAAAACTCATAAAGCAT+TGG 0.515978 3:+8971544 None:intergenic
TACGCTCCTCCAACAACAGC+AGG 0.517835 3:+8972171 None:intergenic
TGGAACTCGTCGATTGAAGC+TGG 0.518719 3:-8973828 MsG0380011990.01.T01:CDS
CTGTCGCACATTCTTTCAGT+TGG 0.523809 3:-8970748 MsG0380011990.01.T01:CDS
TGTCTTATCCATCAATGCCT+TGG 0.524868 3:-8971956 MsG0380011990.01.T01:CDS
AGGCATAATTGGAAGCCTCT+TGG 0.530309 3:-8971197 MsG0380011990.01.T01:CDS
TCTCGGCTATATCTTGGACT+TGG 0.534605 3:-8970895 MsG0380011990.01.T01:CDS
CATTCTTTCAGTTGGTACGC+TGG 0.534774 3:-8970740 MsG0380011990.01.T01:intron
TTCATTCATGGCAGTGACCA+AGG 0.548723 3:-8971866 MsG0380011990.01.T01:intron
ATTGTACATTGGAGTATGCT+TGG 0.554345 3:-8971164 MsG0380011990.01.T01:CDS
TATAGTAGCTCCTGTAAAGA+CGG 0.554976 3:+8971654 None:intergenic
AAGCAGCCCAGCCATAATGC+TGG 0.555365 3:+8970783 None:intergenic
CCCAAATCTGAGAATGAAGA+GGG 0.557797 3:+8970818 None:intergenic
GTATGTATTGCATTGTACAT+TGG 0.579606 3:-8971175 MsG0380011990.01.T01:CDS
TCTTGGTGTTAGAGAATCAT+CGG 0.580789 3:-8971896 MsG0380011990.01.T01:CDS
ATAGTAGCTCCTGTAAAGAC+GGG 0.580914 3:+8971655 None:intergenic
ATGCTTGGTGATTACTGGAA+TGG 0.581981 3:-8971149 MsG0380011990.01.T01:CDS
GTGAACTTTAGCAAATATTG+CGG 0.592167 3:+8970855 None:intergenic
TGAAGAATCTAAGAAGCCAC+AGG 0.593382 3:-8971587 MsG0380011990.01.T01:CDS
GCTATATCTTGGACTTGGCA+GGG 0.593905 3:-8970890 MsG0380011990.01.T01:CDS
GTGTTGCCAGCATTATGGCT+GGG 0.596128 3:-8970789 MsG0380011990.01.T01:CDS
TCTGAGAATGAAGAGGGGTG+TGG 0.600264 3:+8970824 None:intergenic
TCCTGTGTTATAAATGCACT+CGG 0.607355 3:-8972219 MsG0380011990.01.T01:CDS
TATTAGTAGAATTGGAGCCA+AGG 0.612060 3:+8971939 None:intergenic
TGGAACAAACGAAGACCAGT+TGG 0.612575 3:+8971690 None:intergenic
AATGCTTGACTATCATATTG+GGG 0.616231 3:-8972091 MsG0380011990.01.T01:CDS
GGTTTCTTTCTGTAATGCAG+CGG 0.633148 3:-8972271 MsG0380011990.01.T01:CDS
ACCCAAATCTGAGAATGAAG+AGG 0.633728 3:+8970817 None:intergenic
ACCGAGTGCATTTATAACAC+AGG 0.636037 3:+8972218 None:intergenic
GGTTGCATGAGATGAAGAGT+AGG 0.637763 3:+8973893 None:intergenic
ATTCCAAAATGGATTGGACA+TGG 0.639496 3:-8971994 MsG0380011990.01.T01:CDS
ATTGGACATGGTCTAAACAT+CGG 0.643213 3:-8971982 MsG0380011990.01.T01:CDS
CCTGAACATAGAAACCAACA+AGG 0.670675 3:+8971008 None:intergenic
GCATGAGATGAAGAGTAGGA+CGG 0.685156 3:+8973897 None:intergenic
ACAATGCAATACATACCAAG+AGG 0.689157 3:+8971182 None:intergenic
ATATCAAGACAATAAACCTG+TGG 0.690328 3:+8971571 None:intergenic
GTAAGACCGATTCTCGATCG+AGG 0.708864 3:+8973869 None:intergenic
AGACCGATTCTCGATCGAGG+TGG 0.712907 3:+8973872 None:intergenic
TGAGATGAAGAGTAGGACGG+TGG 0.718403 3:+8973900 None:intergenic
CCAAATCTGAGAATGAAGAG+GGG 0.734973 3:+8970819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCATTTATCTATTTATTA+TGG - Chr3:8971632-8971651 MsG0380011990.01.T01:CDS 10.0%
!! TTATAAATATCAATGTGTTT+GGG - Chr3:8973849-8973868 MsG0380011990.01.T01:CDS 15.0%
!! TTTAATCAAATTGAAAGTTT+GGG - Chr3:8971271-8971290 MsG0380011990.01.T01:intron 15.0%
!! TTTATAAATATCAATGTGTT+TGG - Chr3:8973848-8973867 MsG0380011990.01.T01:CDS 15.0%
!!! AAATTTTTTGACATGATTAT+AGG - Chr3:8973710-8973729 MsG0380011990.01.T01:intron 15.0%
!!! AATTTTTTGACATGATTATA+GGG - Chr3:8973711-8973730 MsG0380011990.01.T01:intron 15.0%
!!! TATGAGATTTAAAATTGAAA+AGG + Chr3:8970396-8970415 None:intergenic 15.0%
!!! TTGTTTTTCGTATTTAATTT+TGG - Chr3:8970430-8970449 MsG0380011990.01.T01:intron 15.0%
!!! TTTTAATCAAATTGAAAGTT+TGG - Chr3:8971270-8971289 MsG0380011990.01.T01:intron 15.0%
!! AAAATTGAATTGAAGAATGA+AGG - Chr3:8970680-8970699 MsG0380011990.01.T01:intron 20.0%
!! AAATTGAATTGAAGAATGAA+GGG - Chr3:8970681-8970700 MsG0380011990.01.T01:intron 20.0%
!! AGAAGTAAATAGTAGATATT+CGG - Chr3:8972732-8972751 MsG0380011990.01.T01:intron 20.0%
!! ATGTTATGTTATCTTAGTTT+GGG + Chr3:8970606-8970625 None:intergenic 20.0%
!! TATGTTATGTTATCTTAGTT+TGG + Chr3:8970607-8970626 None:intergenic 20.0%
!! TCTTTACTAATTGTCAAAAT+AGG - Chr3:8970552-8970571 MsG0380011990.01.T01:intron 20.0%
!! TGTGTATTTATATATGTGTA+TGG + Chr3:8971522-8971541 None:intergenic 20.0%
!! TTATGGTATCTTAGTTATAT+TGG - Chr3:8971649-8971668 MsG0380011990.01.T01:CDS 20.0%
!!! AGTCAAAAGTTCTTTTAAAT+AGG - Chr3:8973651-8973670 MsG0380011990.01.T01:intron 20.0%
!!! GAATGTTATCTTTGAAAATA+GGG + Chr3:8972102-8972121 None:intergenic 20.0%
!!! TAGTTAGTTTAAATCGTATT+AGG - Chr3:8971417-8971436 MsG0380011990.01.T01:intron 20.0%
!!! TTTTTTTTGATTTTCAGCTT+TGG - Chr3:8971313-8971332 MsG0380011990.01.T01:intron 20.0%
! AACTAATGCAACTTAACTAA+AGG + Chr3:8971594-8971613 None:intergenic 25.0%
! AATTGAATTGAAGAATGAAG+GGG - Chr3:8970682-8970701 MsG0380011990.01.T01:intron 25.0%
! AGCGTATCTATATACATATA+CGG - Chr3:8971958-8971977 MsG0380011990.01.T01:CDS 25.0%
! ATTCACCATAATCTTATGTT+AGG + Chr3:8970362-8970381 None:intergenic 25.0%
! GTTAAATACTTTAGGTAAGA+TGG + Chr3:8972279-8972298 None:intergenic 25.0%
! TAATGCTTGACTATCATATT+GGG - Chr3:8972020-8972039 MsG0380011990.01.T01:CDS 25.0%
! TATAGGGAAAATGATACTAT+GGG - Chr3:8973727-8973746 MsG0380011990.01.T01:intron 25.0%
! TCAAAGATAACATTCCAAAA+TGG - Chr3:8972107-8972126 MsG0380011990.01.T01:CDS 25.0%
! TGCTCAATGTTAAATACTTT+AGG + Chr3:8972287-8972306 None:intergenic 25.0%
! TTAAAGAATATCACCTGTAA+TGG - Chr3:8971123-8971142 MsG0380011990.01.T01:CDS 25.0%
! TTAATGCTTGACTATCATAT+TGG - Chr3:8972019-8972038 MsG0380011990.01.T01:CDS 25.0%
! TTAGAAAACTCATAAAGCAT+TGG + Chr3:8972571-8972590 None:intergenic 25.0%
! TTATAGGGAAAATGATACTA+TGG - Chr3:8973726-8973745 MsG0380011990.01.T01:intron 25.0%
! TTCACCATAATCTTATGTTA+GGG + Chr3:8970361-8970380 None:intergenic 25.0%
! TTGTGAAAAAACAAGAAAAG+CGG + Chr3:8971999-8972018 None:intergenic 25.0%
!! AAAGTATCAACAATAGACTT+TGG + Chr3:8972697-8972716 None:intergenic 25.0%
!! ACTGAAGCTTTTAAATCTAA+GGG - Chr3:8973021-8973040 MsG0380011990.01.T01:intron 25.0%
!! GGAATGTTATCTTTGAAAAT+AGG + Chr3:8972103-8972122 None:intergenic 25.0%
!!! AAAGGTAAAGCTTTTTAGTA+TGG + Chr3:8973587-8973606 None:intergenic 25.0%
!!! ACGTTAAGTTTTATATTTGC+TGG - Chr3:8971866-8971885 MsG0380011990.01.T01:intron 25.0%
!!! CTTATTTTTGACATTTCAGA+GGG - Chr3:8972882-8972901 MsG0380011990.01.T01:intron 25.0%
!!! GTAGTTGGTTATTTTAGTTT+GGG - Chr3:8970494-8970513 MsG0380011990.01.T01:intron 25.0%
!!! TCTTATTTTTGACATTTCAG+AGG - Chr3:8972881-8972900 MsG0380011990.01.T01:intron 25.0%
!!! TTTAGTTTGGGTATCTTTTT+TGG - Chr3:8970506-8970525 MsG0380011990.01.T01:intron 25.0%
AATGCTTGACTATCATATTG+GGG - Chr3:8972021-8972040 MsG0380011990.01.T01:CDS 30.0%
AATGTAGCAAAAAGCAATGT+TGG + Chr3:8973678-8973697 None:intergenic 30.0%
AGGAGATGAATTACTCATAA+GGG + Chr3:8971049-8971068 None:intergenic 30.0%
ATACTTTAGGTAAGATGGAA+AGG + Chr3:8972274-8972293 None:intergenic 30.0%
ATATCAAGACAATAAACCTG+TGG + Chr3:8972544-8972563 None:intergenic 30.0%
GAAAAATTGAACCTTTCCAT+AGG + Chr3:8970949-8970968 None:intergenic 30.0%
GAAACCCTAACATAAGATTA+TGG - Chr3:8970354-8970373 MsG0380011990.01.T01:intron 30.0%
GATAACATTCCAAAATGGAT+TGG - Chr3:8972112-8972131 MsG0380011990.01.T01:CDS 30.0%
GATTTAAAAGCTTCAGTCAA+AGG + Chr3:8973018-8973037 None:intergenic 30.0%
GTATGTATTGCATTGTACAT+TGG - Chr3:8972937-8972956 MsG0380011990.01.T01:intron 30.0%
GTGAACTTTAGCAAATATTG+CGG + Chr3:8973260-8973279 None:intergenic 30.0%
GTGTGTATTTGTTTGTATTC+AGG - Chr3:8973873-8973892 MsG0380011990.01.T01:CDS 30.0%
GTTTCTATTCTGATTAGCAT+TGG - Chr3:8973054-8973073 MsG0380011990.01.T01:intron 30.0%
TAAATTGTGCTTGCAAAACA+AGG - Chr3:8971339-8971358 MsG0380011990.01.T01:intron 30.0%
TAGGAGATGAATTACTCATA+AGG + Chr3:8971050-8971069 None:intergenic 30.0%
TATGAGTAATTCATCTCCTA+TGG - Chr3:8971050-8971069 MsG0380011990.01.T01:CDS 30.0%
TGAACTTTAGCAAATATTGC+GGG + Chr3:8973259-8973278 None:intergenic 30.0%
TGATATCTAACCATACTAAC+AGG + Chr3:8973828-8973847 None:intergenic 30.0%
TGCTTATTTACATACATGAC+AGG - Chr3:8973173-8973192 MsG0380011990.01.T01:intron 30.0%
TGGTATCTTAGTTATATTGG+AGG - Chr3:8971652-8971671 MsG0380011990.01.T01:CDS 30.0%
! AAGTGATTTGTGAGTTAGTT+TGG - Chr3:8971468-8971487 MsG0380011990.01.T01:intron 30.0%
! CATGTTTTATACAAGGTTGT+GGG - Chr3:8973484-8973503 MsG0380011990.01.T01:intron 30.0%
! GAAAGGTTCAATTTTTCCTA+CGG - Chr3:8970952-8970971 MsG0380011990.01.T01:intron 30.0%
! GACTGAAGCTTTTAAATCTA+AGG - Chr3:8973020-8973039 MsG0380011990.01.T01:intron 30.0%
! GAGTATCCATGTTTTATACA+AGG - Chr3:8973477-8973496 MsG0380011990.01.T01:intron 30.0%
! GATTTTCCAATAGGCATAAT+TGG - Chr3:8972904-8972923 MsG0380011990.01.T01:intron 30.0%
! TAATGTAGATGTGCTGTTAT+TGG - Chr3:8971174-8971193 MsG0380011990.01.T01:CDS 30.0%
! TGATTTTACGTTGTGGATAT+AGG - Chr3:8970456-8970475 MsG0380011990.01.T01:intron 30.0%
! TTAGGGTTTCAATTGTTTTC+TGG + Chr3:8970344-8970363 None:intergenic 30.0%
!! AGAATCGATTTCTAAGATCA+TGG - Chr3:8973397-8973416 MsG0380011990.01.T01:intron 30.0%
!! CTGCTTTAAGATAATGATCA+TGG - Chr3:8971767-8971786 MsG0380011990.01.T01:intron 30.0%
!! GTGAGAAGTATTAGTAGAAT+TGG + Chr3:8972184-8972203 None:intergenic 30.0%
!!! CGTAGTTGGTTATTTTAGTT+TGG - Chr3:8970493-8970512 MsG0380011990.01.T01:intron 30.0%
!!! TCATTTTGATTTCATCCGTA+AGG - Chr3:8971226-8971245 MsG0380011990.01.T01:intron 30.0%
!!! TGTTTTCTGGTTTTAATCGA+CGG + Chr3:8970331-8970350 None:intergenic 30.0%
ACAATGCAATACATACCAAG+AGG + Chr3:8972933-8972952 None:intergenic 35.0%
ACCAACTACGATAACCAAAT+TGG + Chr3:8970483-8970502 None:intergenic 35.0%
AGTTATATTGGAGGATGTGT+AGG - Chr3:8971661-8971680 MsG0380011990.01.T01:CDS 35.0%
ATAGTCTTCTTTGCGTATGT+TGG - Chr3:8972478-8972497 MsG0380011990.01.T01:intron 35.0%
ATTCAAACTCTGCTCAATTG+AGG - Chr3:8971373-8971392 MsG0380011990.01.T01:intron 35.0%
ATTGGACATGGTCTAAACAT+CGG - Chr3:8972130-8972149 MsG0380011990.01.T01:CDS 35.0%
ATTGTACATTGGAGTATGCT+TGG - Chr3:8972948-8972967 MsG0380011990.01.T01:intron 35.0%
CCACAACCTTGTATAAAACA+TGG + Chr3:8973486-8973505 None:intergenic 35.0%
CTCACTATAATTCTCTGTCT+TGG - Chr3:8972199-8972218 MsG0380011990.01.T01:CDS 35.0%
CTTAGATTCTTCAGCAGAAT+TGG + Chr3:8972518-8972537 None:intergenic 35.0%
GATATAGGCGACATAAATGA+TGG - Chr3:8971092-8971111 MsG0380011990.01.T01:CDS 35.0%
GGAAAATGATACTATGGGTA+TGG - Chr3:8973732-8973751 MsG0380011990.01.T01:intron 35.0%
GTGATCATTACCTGTTAGTA+TGG - Chr3:8973815-8973834 MsG0380011990.01.T01:intron 35.0%
GTTATTGTTGTCATCTTTGC+TGG - Chr3:8972379-8972398 MsG0380011990.01.T01:intron 35.0%
TAATGATCATGGACATGTGA+TGG - Chr3:8971778-8971797 MsG0380011990.01.T01:intron 35.0%
TATAGTAGCTCCTGTAAAGA+CGG + Chr3:8972461-8972480 None:intergenic 35.0%
TATGGTTGTATCAGTAATGG+CGG - Chr3:8971068-8971087 MsG0380011990.01.T01:CDS 35.0%
TATTAGTAGAATTGGAGCCA+AGG + Chr3:8972176-8972195 None:intergenic 35.0%
TCCAATTTGGTTATCGTAGT+TGG - Chr3:8970479-8970498 MsG0380011990.01.T01:intron 35.0%
TCCTATGGTTGTATCAGTAA+TGG - Chr3:8971065-8971084 MsG0380011990.01.T01:CDS 35.0%
TCCTGTGTTATAAATGCACT+CGG - Chr3:8971893-8971912 MsG0380011990.01.T01:CDS 35.0%
TGGACTATTAGATTCACAGA+AGG + Chr3:8972791-8972810 None:intergenic 35.0%
TTGTGGATATAGGTCCAATT+TGG - Chr3:8970466-8970485 MsG0380011990.01.T01:intron 35.0%
! AACTTAACTAAAGGCGTGTT+TGG + Chr3:8971585-8971604 None:intergenic 35.0%
! AATTTTCAGAAGCAGCCTTA+CGG + Chr3:8971244-8971263 None:intergenic 35.0%
! CCATGTTTTATACAAGGTTG+TGG - Chr3:8973483-8973502 MsG0380011990.01.T01:intron 35.0%
! TAGATGTGCTGTTATTGGTA+TGG - Chr3:8971179-8971198 MsG0380011990.01.T01:CDS 35.0%
! TGCAAAACAAGGTTGTGTTT+TGG - Chr3:8971350-8971369 MsG0380011990.01.T01:intron 35.0%
! TTTCAGAGGGATTTTCCAAT+AGG - Chr3:8972895-8972914 MsG0380011990.01.T01:intron 35.0%
!! ATTCCAAAATGGATTGGACA+TGG - Chr3:8972118-8972137 MsG0380011990.01.T01:CDS 35.0%
!! TCTTGGTGTTAGAGAATCAT+CGG - Chr3:8972216-8972235 MsG0380011990.01.T01:CDS 35.0%
!!! GTTTTCTGGTTTTAATCGAC+GGG + Chr3:8970330-8970349 None:intergenic 35.0%
!!! TTGGTTCTGATTTTACGTTG+TGG - Chr3:8970449-8970468 MsG0380011990.01.T01:intron 35.0%
AATTGAAGAATGAAGGGGTC+TGG - Chr3:8970687-8970706 MsG0380011990.01.T01:intron 40.0%
ACCCAAATCTGAGAATGAAG+AGG + Chr3:8973298-8973317 None:intergenic 40.0%
ACCGAGTGCATTTATAACAC+AGG + Chr3:8971897-8971916 None:intergenic 40.0%
AGGCTTCCAATTATGCCTAT+TGG + Chr3:8972913-8972932 None:intergenic 40.0%
ATAGTAGCTCCTGTAAAGAC+GGG + Chr3:8972460-8972479 None:intergenic 40.0%
ATCGGCAGTGAATTCATTCA+TGG - Chr3:8972234-8972253 MsG0380011990.01.T01:CDS 40.0%
ATGGTTCCATACAGTCTTCT+AGG - Chr3:8972982-8973001 MsG0380011990.01.T01:intron 40.0%
CAACAATAGACTTTGGCATC+TGG + Chr3:8972690-8972709 None:intergenic 40.0%
CCAAACTTTGTGGCTTATTC+TGG - Chr3:8971820-8971839 MsG0380011990.01.T01:intron 40.0%
CCAAATCTGAGAATGAAGAG+GGG + Chr3:8973296-8973315 None:intergenic 40.0%
CCAGAATAAGCCACAAAGTT+TGG + Chr3:8971823-8971842 None:intergenic 40.0%
CCCAAATCTGAGAATGAAGA+GGG + Chr3:8973297-8973316 None:intergenic 40.0%
CCCTCTTCATTCTCAGATTT+GGG - Chr3:8973294-8973313 MsG0380011990.01.T01:intron 40.0%
CCTGAACATAGAAACCAACA+AGG + Chr3:8973107-8973126 None:intergenic 40.0%
CGCGTGCTCATTATTGAAAA+AGG + Chr3:8973605-8973624 None:intergenic 40.0%
CTTCATTCTCAGATTTGGGT+TGG - Chr3:8973298-8973317 MsG0380011990.01.T01:intron 40.0%
GCCATTACTGATACAACCAT+AGG + Chr3:8971069-8971088 None:intergenic 40.0%
GGTTTCTTTCTGTAATGCAG+CGG - Chr3:8971841-8971860 MsG0380011990.01.T01:intron 40.0%
GTCAAACAAATCAATGCCGT+AGG + Chr3:8970971-8970990 None:intergenic 40.0%
TCTTCTCCTAGAAGACTGTA+TGG + Chr3:8972991-8973010 None:intergenic 40.0%
TGAAGAATCTAAGAAGCCAC+AGG - Chr3:8972525-8972544 MsG0380011990.01.T01:intron 40.0%
TGGTCTTCGTTTGTTCCAAA+TGG - Chr3:8972427-8972446 MsG0380011990.01.T01:intron 40.0%
TGTAAATAAGCACATGCCTC+CGG + Chr3:8973165-8973184 None:intergenic 40.0%
TGTCTTATCCATCAATGCCT+TGG - Chr3:8972156-8972175 MsG0380011990.01.T01:CDS 40.0%
TGTTACAGCTCCAAACTTTG+TGG - Chr3:8971810-8971829 MsG0380011990.01.T01:intron 40.0%
TTCTTTCTGATGAGCAGTCT+CGG - Chr3:8973200-8973219 MsG0380011990.01.T01:intron 40.0%
TTGTTACACGTCTGTTGAGT+TGG + Chr3:8972811-8972830 None:intergenic 40.0%
! AAGACGGGTCTTATACCATT+TGG + Chr3:8972445-8972464 None:intergenic 40.0%
! AGACCATGTCCAATCCATTT+TGG + Chr3:8972124-8972143 None:intergenic 40.0%
! ATCAGTAATGGCGGAGATAT+AGG - Chr3:8971077-8971096 MsG0380011990.01.T01:CDS 40.0%
! ATGCTTGGTGATTACTGGAA+TGG - Chr3:8972963-8972982 MsG0380011990.01.T01:intron 40.0%
! CGTAATACTGATTGATGTGC+CGG - Chr3:8973143-8973162 MsG0380011990.01.T01:intron 40.0%
!! ATTAGCATTGGTGCTATTGC+TGG - Chr3:8973066-8973085 MsG0380011990.01.T01:intron 40.0%
!! CCTTGTTGGTTTCTATGTTC+AGG - Chr3:8973104-8973123 MsG0380011990.01.T01:intron 40.0%
!! TTGAGGTTGATGTTTCCAAC+TGG - Chr3:8972407-8972426 MsG0380011990.01.T01:intron 40.0%
AGGCATAATTGGAAGCCTCT+TGG - Chr3:8972915-8972934 MsG0380011990.01.T01:intron 45.0%
AGTCTACCACCATTGTCAAG+TGG + Chr3:8973533-8973552 None:intergenic 45.0%
ATGAAGGGGTCTGGAAGAAT+AGG - Chr3:8970696-8970715 MsG0380011990.01.T01:intron 45.0%
CCCCTCTTCATTCTCAGATT+TGG - Chr3:8973293-8973312 MsG0380011990.01.T01:intron 45.0%
CTCAAGTGTCAAGCCATTAC+AGG + Chr3:8971139-8971158 None:intergenic 45.0%
CTGTCGCACATTCTTTCAGT+TGG - Chr3:8973364-8973383 MsG0380011990.01.T01:intron 45.0%
CTTACAACAGCACTCCTTGT+TGG - Chr3:8973090-8973109 MsG0380011990.01.T01:intron 45.0%
GCATGAGATGAAGAGTAGGA+CGG + Chr3:8970218-8970237 None:intergenic 45.0%
GCTATATCTTGGACTTGGCA+GGG - Chr3:8973222-8973241 MsG0380011990.01.T01:intron 45.0%
GGTAAGATGGAAAGGAACCT+TGG + Chr3:8972266-8972285 None:intergenic 45.0%
GGTATAAGACCCGTCTTTAC+AGG - Chr3:8972448-8972467 MsG0380011990.01.T01:intron 45.0%
GGTTGCATGAGATGAAGAGT+AGG + Chr3:8970222-8970241 None:intergenic 45.0%
GTCTACCACCATTGTCAAGT+GGG + Chr3:8973532-8973551 None:intergenic 45.0%
TCTCGATTTCCTGCTGTTGT+TGG - Chr3:8971932-8971951 MsG0380011990.01.T01:CDS 45.0%
TCTCGGCTATATCTTGGACT+TGG - Chr3:8973217-8973236 MsG0380011990.01.T01:intron 45.0%
TGGAACAAACGAAGACCAGT+TGG + Chr3:8972425-8972444 None:intergenic 45.0%
TGGAGGATGTGTAGGCTAAA+AGG - Chr3:8971669-8971688 MsG0380011990.01.T01:CDS 45.0%
TGGATGTGTTGCCAGCATTA+TGG - Chr3:8973318-8973337 MsG0380011990.01.T01:intron 45.0%
TTCATTCATGGCAGTGACCA+AGG - Chr3:8972246-8972265 MsG0380011990.01.T01:CDS 45.0%
! AATACTGATTGATGTGCCGG+AGG - Chr3:8973146-8973165 MsG0380011990.01.T01:intron 45.0%
! AGGCGACATAAATGATGGTG+TGG - Chr3:8971097-8971116 MsG0380011990.01.T01:CDS 45.0%
! CATCTTTGCTGGAGCTTTTG+AGG - Chr3:8972390-8972409 MsG0380011990.01.T01:intron 45.0%
! CATTCTTTCAGTTGGTACGC+TGG - Chr3:8973372-8973391 MsG0380011990.01.T01:intron 45.0%
! GGAGTATGCTTGGTGATTAC+TGG - Chr3:8972958-8972977 MsG0380011990.01.T01:intron 45.0%
!! AATTGGAGCCAAGGCATTGA+TGG + Chr3:8972167-8972186 None:intergenic 45.0%
!! GCTTTAGCTCTCCTATGGAA+AGG - Chr3:8970935-8970954 MsG0380011990.01.T01:intron 45.0%
ACAAGGTTGTGGGACATCAG+TGG - Chr3:8973494-8973513 MsG0380011990.01.T01:intron 50.0%
AGAGCTAAAGCCTTGGCATG+AGG + Chr3:8970926-8970945 None:intergenic 50.0%
CAACCACCTCGATCGAGAAT+CGG - Chr3:8970237-8970256 MsG0380011990.01.T01:intron 50.0%
CATGACCCACTTGACAATGG+TGG - Chr3:8973524-8973543 MsG0380011990.01.T01:intron 50.0%
CCATAGGAGAGCTAAAGCCT+TGG + Chr3:8970933-8970952 None:intergenic 50.0%
CCTTGGCATGAGGCAACTTT+GGG + Chr3:8970916-8970935 None:intergenic 50.0%
CGATTTCCTGCTGTTGTTGG+AGG - Chr3:8971935-8971954 MsG0380011990.01.T01:CDS 50.0%
GAGCAGTCTCGGCTATATCT+TGG - Chr3:8973211-8973230 MsG0380011990.01.T01:intron 50.0%
GCACATGACCCACTTGACAA+TGG - Chr3:8973521-8973540 MsG0380011990.01.T01:intron 50.0%
GGCTATATCTTGGACTTGGC+AGG - Chr3:8973221-8973240 MsG0380011990.01.T01:intron 50.0%
GTGTTGCCAGCATTATGGCT+GGG - Chr3:8973323-8973342 MsG0380011990.01.T01:intron 50.0%
TATCTTGGACTTGGCAGGGA+TGG - Chr3:8973226-8973245 MsG0380011990.01.T01:intron 50.0%
TCTGAGAATGAAGAGGGGTG+TGG + Chr3:8973291-8973310 None:intergenic 50.0%
TGAGATGAAGAGTAGGACGG+TGG + Chr3:8970215-8970234 None:intergenic 50.0%
TGTGTTGCCAGCATTATGGC+TGG - Chr3:8973322-8973341 MsG0380011990.01.T01:intron 50.0%
! ACTCGTCTGTCGATTGAAGC+TGG - Chr3:8970264-8970283 MsG0380011990.01.T01:intron 50.0%
! ATGAAGAGGGGTGTGGCATT+TGG + Chr3:8973284-8973303 None:intergenic 50.0%
! GTAAGACCGATTCTCGATCG+AGG + Chr3:8970246-8970265 None:intergenic 50.0%
! TCGTCGATTGAAGCTGGAAC+CGG - Chr3:8970290-8970309 MsG0380011990.01.T01:intron 50.0%
! TGAAGAGGGGTGTGGCATTT+GGG + Chr3:8973283-8973302 None:intergenic 50.0%
! TGGAACTCGTCGATTGAAGC+TGG - Chr3:8970284-8970303 MsG0380011990.01.T01:intron 50.0%
!! CCAAGGCTTTAGCTCTCCTA+TGG - Chr3:8970930-8970949 MsG0380011990.01.T01:intron 50.0%
AAGCAGCCCAGCCATAATGC+TGG + Chr3:8973332-8973351 None:intergenic 55.0%
ACGGGTTCGAAGATCTCGAC+CGG + Chr3:8970312-8970331 None:intergenic 55.0%
CCCAAAGTTGCCTCATGCCA+AGG - Chr3:8970913-8970932 MsG0380011990.01.T01:intron 55.0%
GCCTTGGCATGAGGCAACTT+TGG + Chr3:8970917-8970936 None:intergenic 55.0%
TACGCTCCTCCAACAACAGC+AGG + Chr3:8971944-8971963 None:intergenic 55.0%
! AGACCGATTCTCGATCGAGG+TGG + Chr3:8970243-8970262 None:intergenic 55.0%
! GAAGAGGGGTGTGGCATTTG+GGG + Chr3:8973282-8973301 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 8970207 8973927 8970207 ID=MsG0380011990.01;Name=MsG0380011990.01
Chr3 mRNA 8970207 8973927 8970207 ID=MsG0380011990.01.T01;Parent=MsG0380011990.01;Name=MsG0380011990.01.T01;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.66|1|1|6|0|398
Chr3 exon 8973823 8973927 8973823 ID=MsG0380011990.01.T01:exon:1177;Parent=MsG0380011990.01.T01
Chr3 exon 8971867 8972316 8971867 ID=MsG0380011990.01.T01:exon:1176;Parent=MsG0380011990.01.T01
Chr3 exon 8971542 8971764 8971542 ID=MsG0380011990.01.T01:exon:1175;Parent=MsG0380011990.01.T01
Chr3 exon 8971009 8971217 8971009 ID=MsG0380011990.01.T01:exon:1174;Parent=MsG0380011990.01.T01
Chr3 exon 8970741 8970917 8970741 ID=MsG0380011990.01.T01:exon:1173;Parent=MsG0380011990.01.T01
Chr3 exon 8970207 8970239 8970207 ID=MsG0380011990.01.T01:exon:1172;Parent=MsG0380011990.01.T01
Chr3 CDS 8973823 8973927 8973823 ID=MsG0380011990.01.T01:cds;Parent=MsG0380011990.01.T01
Chr3 CDS 8971867 8972316 8971867 ID=MsG0380011990.01.T01:cds;Parent=MsG0380011990.01.T01
Chr3 CDS 8971542 8971764 8971542 ID=MsG0380011990.01.T01:cds;Parent=MsG0380011990.01.T01
Chr3 CDS 8971009 8971217 8971009 ID=MsG0380011990.01.T01:cds;Parent=MsG0380011990.01.T01
Chr3 CDS 8970741 8970917 8970741 ID=MsG0380011990.01.T01:cds;Parent=MsG0380011990.01.T01
Chr3 CDS 8970207 8970239 8970207 ID=MsG0380011990.01.T01:cds;Parent=MsG0380011990.01.T01
Gene Sequence

>MsG0380011990.01.T01

ATGCGCCACCGTCCTACTCTTCATCTCATGCAACCACCTCGATCGAGAATCGGTCTTACTCGTCTGTCGATTGAAGCTGGAACTCGTCGATTGAAGCTGGAACCGCTCCAAACTTTGTGGCTTATTCTGGTTTCTTTCTGTAATGCAGCGGTAACGTTAAGTTTTATATTTGCTGGAGCATCCTGTGTTATAAATGCACTCGGTTACGCTGAGCTAGCTTCTCGATTTCCTGCTGTTGTTGGAGGAGCGTATCTATATACATATACGGCTTTCAATGAACTTACCGCTTTTCTTGTTTTTTCACAATTAATGCTTGACTATCATATTGGGGCAACTAGCATAGCAAGAAGTTTAGCAAATTATATTGTTACATTTCTAGAGATCTTCCCTATTTTCAAAGATAACATTCCAAAATGGATTGGACATGGTCTAAACATCGGAAATGTCTTATCCATCAATGCCTTGGCTCCAATTCTACTAATACTTCTCACTATAATTCTCTGTCTTGGTGTTAGAGAATCATCGGCAGTGAATTCATTCATGGCAGTGACCAAGATAATCATTGTTATTGTTGTCATCTTTGCTGGAGCTTTTGAGGTTGATGTTTCCAACTGGTCTTCGTTTGTTCCAAATGGTATAAGACCCGTCTTTACAGGAGCTACTATAGTCTTCTTTGCGTATGTTGGATTTGATGCAGTTGCCAATTCTGCTGAAGAATCTAAGAAGCCACAGGTTTATTGTCTTGATATTGCTCCAATGCTTTATGAGTTTTCTAAATGCATAATTGGAAGCCTCTTGGTATGTATTGCATTGTACATTGGAGTATGCTTGGTGATTACTGGAATGGTTCCATACAGTCTTCTAGGAGAAGAAGCTCCTTTGACTGAAGCTTTTAAATCTAAGGGATTAAAATTTGTTTCTATTCTGATTAGCATTGGTGCTATTGCTGGACTTACAACAGCACTCCTTGTTGGTTTCTATGTTCAGTCTCGGCTATATCTTGGACTTGGCAGGGATGGTTTACTACCCGCAATATTTGCTAAAGTTCACCCCAAATGCCACACCCCTCTTCATTCTCAGATTTGGGTTGGATGTGTTGCCAGCATTATGGCTGGGCTGCTTAATGTACGCATGCTGTCGCACATTCTTTCAGTTGGTACGCTGGTATCTAAGTCATATCGTATTTTAAGATTTTAA
Protein sequence

>MsG0380011990.01.T01

MRHRPTLHLMQPPRSRIGLTRLSIEAGTRRLKLEPLQTLWLILVSFCNAAVTLSFIFAGASCVINALGYAELASRFPAVVGGAYLYTYTAFNELTAFLVFSQLMLDYHIGATSIARSLANYIVTFLEIFPIFKDNIPKWIGHGLNIGNVLSINALAPILLILLTIILCLGVRESSAVNSFMAVTKIIIVIVVIFAGAFEVDVSNWSSFVPNGIRPVFTGATIVFFAYVGFDAVANSAEESKKPQVYCLDIAPMLYEFSKCIIGSLLVCIALYIGVCLVITGMVPYSLLGEEAPLTEAFKSKGLKFVSILISIGAIAGLTTALLVGFYVQSRLYLGLGRDGLLPAIFAKVHPKCHTPLHSQIWVGCVASIMAGLLNVRMLSHILSVGTLVSKSYRILRF*