AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008101.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008101.01.T01 MTR_2g035430 98.120 585 11 0 1 585 7 591 0.0 1188
MsG0280008101.01.T01 MTR_8g461380 61.649 558 213 1 8 565 21 577 0.0 692
MsG0280008101.01.T01 MTR_8g089320 56.696 575 249 0 7 581 13 587 0.0 679
MsG0280008101.01.T01 MTR_1g030660 57.398 561 234 2 22 578 23 582 0.0 677
MsG0280008101.01.T01 MTR_8g089360 57.245 559 238 1 14 572 25 582 0.0 666
MsG0280008101.01.T01 MTR_8g089360 57.245 559 238 1 14 572 8 565 0.0 666
MsG0280008101.01.T01 MTR_8g089340 55.455 440 195 1 143 581 1 440 1.38e-165 479
MsG0280008101.01.T01 MTR_1g111740 41.012 573 320 5 22 579 6 575 3.47e-147 437
MsG0280008101.01.T01 MTR_4g099270 41.210 529 298 5 54 573 10 534 1.81e-126 383
MsG0280008101.01.T01 MTR_4g099270 42.559 383 216 2 28 406 5 387 9.04e-99 306
MsG0280008101.01.T01 MTR_4g099270 39.671 426 244 5 157 573 1 422 2.19e-93 294
MsG0280008101.01.T01 MTR_6g034535 58.590 227 86 2 355 574 89 314 1.47e-83 264
MsG0280008101.01.T01 MTR_6g034535 39.604 101 36 1 92 192 19 94 3.55e-13 71.2
MsG0280008101.01.T01 MTR_4g099270 41.722 302 172 2 28 325 5 306 2.37e-71 232
MsG0280008101.01.T01 MTR_6g027630 33.412 422 269 6 28 440 6 424 5.71e-69 234
MsG0280008101.01.T01 MTR_6g027630 33.412 422 269 6 28 440 6 424 1.89e-68 233
MsG0280008101.01.T01 MTR_6g027660 31.754 422 275 4 26 440 10 425 3.75e-67 230
MsG0280008101.01.T01 MTR_7g007850 31.021 519 342 10 59 566 42 555 1.21e-66 227
MsG0280008101.01.T01 MTR_6g027680 31.090 431 283 4 18 440 3 427 1.27e-66 227
MsG0280008101.01.T01 MTR_7g086610 31.884 414 262 4 37 440 10 413 2.28e-66 228
MsG0280008101.01.T01 MTR_7g086510 31.472 394 263 3 54 440 26 419 7.45e-65 224
MsG0280008101.01.T01 MTR_7g007850 29.541 545 346 9 59 566 42 585 3.22e-64 221
MsG0280008101.01.T01 MTR_6g027650 31.190 420 274 4 28 440 6 417 4.11e-64 221
MsG0280008101.01.T01 MTR_7g007850 33.249 397 256 7 59 449 42 435 1.00e-57 201
MsG0280008101.01.T01 MTR_7g007850 33.249 397 256 7 59 449 42 435 1.43e-57 202
MsG0280008101.01.T01 MTR_6g027630 33.136 338 217 4 111 440 3 339 6.31e-53 189
MsG0280008101.01.T01 MTR_8g089342 65.812 117 40 0 16 132 23 139 4.84e-49 167
MsG0280008101.01.T01 MTR_6g027670 31.646 158 108 0 283 440 1 158 2.49e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008101.01.T01 AT2G34960 73.797 561 145 2 7 566 5 564 0.0 862
MsG0280008101.01.T01 AT4G21120 61.661 566 217 0 3 568 7 572 0.0 736
MsG0280008101.01.T01 AT1G17120 61.702 564 215 1 2 565 17 579 0.0 717
MsG0280008101.01.T01 AT4G21120 59.716 422 170 0 147 568 1 422 0.0 531
MsG0280008101.01.T01 AT3G10600 42.806 563 288 6 21 561 11 561 2.09e-142 425
MsG0280008101.01.T01 AT5G04770 41.772 553 302 5 24 561 15 562 4.87e-142 424
MsG0280008101.01.T01 AT5G04770 43.152 387 210 2 24 400 15 401 4.51e-104 320
MsG0280008101.01.T01 AT3G10600 42.155 427 213 6 157 561 1 415 1.96e-103 320
MsG0280008101.01.T01 AT5G04770 41.429 420 226 5 157 561 1 415 6.58e-98 305
MsG0280008101.01.T01 AT5G36940 32.918 401 258 3 49 442 16 412 1.07e-67 231
MsG0280008101.01.T01 AT3G03720 26.878 599 363 12 48 579 6 596 2.20e-67 230
MsG0280008101.01.T01 AT1G05940 28.468 555 376 9 35 571 14 565 2.43e-64 221
MsG0280008101.01.T01 AT1G58030 30.097 412 277 3 36 440 14 421 1.78e-63 220
MsG0280008101.01.T01 AT1G05940 28.376 511 346 8 35 528 14 521 4.79e-57 200
MsG0280008101.01.T01 AT1G05940 29.139 453 305 6 35 472 14 465 1.37e-56 198
MsG0280008101.01.T01 AT1G05940 27.664 441 303 6 145 571 9 447 1.27e-45 167

Find 95 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGGGAATTTCAGCTTAT+TGG 0.124964 2:-25469724 MsG0280008101.01.T01:CDS
TCAATTGGTGGGACCTAATT+TGG 0.164490 2:-25470909 MsG0280008101.01.T01:CDS
AATGGGAATTTCAGCTTATT+GGG 0.215067 2:-25469723 MsG0280008101.01.T01:CDS
GATGATATCCATTGCACTTT+TGG 0.225184 2:-25469831 MsG0280008101.01.T01:CDS
CACATCCAAGCTAGTGAAAA+AGG 0.261858 2:+25469895 None:intergenic
AGTCGCCTAATTCAATTCTT+AGG 0.284521 2:+25470704 None:intergenic
GCAAAATATGTAGTAGCTTT+TGG 0.291066 2:-25470091 MsG0280008101.01.T01:CDS
CCCTATAGCAGTTGGTGTTC+TGG 0.294221 2:-25470518 MsG0280008101.01.T01:CDS
TTCAGAAAGTTGGAATGAAT+TGG 0.299542 2:-25470114 MsG0280008101.01.T01:CDS
TCTACATTCAACTTATGATA+TGG 0.303089 2:-25469453 MsG0280008101.01.T01:CDS
CTCATTGTTGCTTCTTCAAT+GGG 0.303127 2:-25469740 MsG0280008101.01.T01:CDS
AGCAAAGGAAGCCAAGGTTT+TGG 0.309740 2:-25469613 MsG0280008101.01.T01:CDS
ACACTGTTACAGTTCCAATT+TGG 0.311040 2:-25469673 MsG0280008101.01.T01:CDS
GCAATTCTTTACTTTGCATA+TGG 0.325124 2:-25470316 MsG0280008101.01.T01:CDS
TTGATTCGAAGCGAATCTTT+TGG 0.333880 2:+25470577 None:intergenic
GCCTACCTAAGAATTGAATT+AGG 0.344020 2:-25470709 MsG0280008101.01.T01:CDS
ATCATATTCGTAATCATTGC+AGG 0.347703 2:-25470412 MsG0280008101.01.T01:CDS
CTCTTTCACAAACATGGTTA+AGG 0.349691 2:-25471020 MsG0280008101.01.T01:CDS
CATCTCCAATAGCTTCTTTG+TGG 0.353269 2:+25471102 None:intergenic
TCTCATTGTTGCTTCTTCAA+TGG 0.355395 2:-25469741 MsG0280008101.01.T01:CDS
GACATACCAATCGGCTTGAT+TGG 0.360474 2:-25470241 MsG0280008101.01.T01:CDS
GTAAGAAGGTACTATGTTAG+AGG 0.364200 2:-25469809 MsG0280008101.01.T01:CDS
GACCTAATTTGGTTTGGCTT+TGG 0.371810 2:-25470898 MsG0280008101.01.T01:CDS
TCAGTTGCATTTCAGAAAGT+TGG 0.376841 2:-25470124 MsG0280008101.01.T01:CDS
CACCAAAGCCAAACCAAATT+AGG 0.385473 2:+25470896 None:intergenic
ACCAGAACACCAACTGCTAT+AGG 0.387682 2:+25470517 None:intergenic
CTCAGTGGCATCGTCTGATC+TGG 0.388850 2:+25470978 None:intergenic
TCAGAAAGTTGGAATGAATT+GGG 0.390454 2:-25470113 MsG0280008101.01.T01:CDS
TTTGGCTTTGGTGCAGTGAT+TGG 0.393125 2:-25470886 MsG0280008101.01.T01:CDS
GCAGGAATCTTTGTGCTAAC+TGG 0.395596 2:-25470862 MsG0280008101.01.T01:CDS
CACAGTCATCTATTGCTTGA+TGG 0.401383 2:-25470203 MsG0280008101.01.T01:CDS
TTTGTTGCAATTGACAAAGA+TGG 0.406903 2:+25469566 None:intergenic
ATCAGAAGTGTAGCATTTAT+CGG 0.409131 2:+25469941 None:intergenic
TGGTGGGACCTAATTTGGTT+TGG 0.409509 2:-25470904 MsG0280008101.01.T01:CDS
GTCTTATCCTATGTAGCTTC+AGG 0.410241 2:-25470805 MsG0280008101.01.T01:CDS
AAGCCGATTGGTATGTCCTT+TGG 0.412936 2:+25470247 None:intergenic
ACAAACATGGTTAAGGTTCA+AGG 0.416776 2:-25471013 MsG0280008101.01.T01:CDS
TATTGGGGATTGAGGCCTAA+TGG 0.419521 2:-25469707 MsG0280008101.01.T01:CDS
AATACACCTTTAACTCCATA+AGG 0.422612 2:+25470349 None:intergenic
AGAGAGACTGCTAGGATTGA+AGG 0.423881 2:-25469389 MsG0280008101.01.T01:CDS
CAGCTTTGAAAGGATTCCTC+TGG 0.424940 2:+25471060 None:intergenic
ATGAACCACAAAGAAGCTAT+TGG 0.431579 2:-25471107 MsG0280008101.01.T01:CDS
GGGGAGTTCCACTTGTTCCA+TGG 0.441381 2:-25469592 MsG0280008101.01.T01:CDS
GCGCTTGTACATCCGAAAAC+AGG 0.445402 2:-25469968 MsG0280008101.01.T01:CDS
CCGATTGGTATGTCCTTTGG+CGG 0.446653 2:+25470250 None:intergenic
CCAGAACACCAACTGCTATA+GGG 0.459155 2:+25470518 None:intergenic
TTGAGGCCTAATGGTTGGAT+TGG 0.460311 2:-25469698 MsG0280008101.01.T01:CDS
TTTCAGCTTATTGGGGATTG+AGG 0.463801 2:-25469715 MsG0280008101.01.T01:CDS
GCATTCAAGAAGTATGTTAC+CGG 0.465899 2:+25470663 None:intergenic
ATTCTTTACTTTGCATATGG+AGG 0.482566 2:-25470313 MsG0280008101.01.T01:CDS
CTTCTGCTCTTTCACAAACA+TGG 0.484220 2:-25471026 MsG0280008101.01.T01:CDS
GCTGTTGAAGTTCCAGCTGC+AGG 0.487505 2:-25470742 MsG0280008101.01.T01:CDS
TGAAATTCCTGAAGCTACAT+AGG 0.493757 2:+25470798 None:intergenic
CAGAGGAATCCTTTCAAAGC+TGG 0.496146 2:-25471059 MsG0280008101.01.T01:CDS
TTCTTTACTTTGCATATGGA+GGG 0.502896 2:-25470312 MsG0280008101.01.T01:CDS
GCAAATGAACCACCTGCAGC+TGG 0.513871 2:+25470730 None:intergenic
AAAGCACACCATCTCAAAGA+TGG 0.514487 2:-25470556 MsG0280008101.01.T01:CDS
AAATACACAGATATAGATAC+AGG 0.520624 2:-25470157 MsG0280008101.01.T01:CDS
TTTGGTGCAGTGATTGGTGC+AGG 0.520646 2:-25470880 MsG0280008101.01.T01:CDS
GTGCAGCAGTATCAAGATCA+TGG 0.523129 2:-25470630 MsG0280008101.01.T01:CDS
GGGGATTGAGGCCTAATGGT+TGG 0.524145 2:-25469703 MsG0280008101.01.T01:CDS
GCTTCTCAATTGGATTGCAT+CGG 0.527593 2:-25470452 MsG0280008101.01.T01:CDS
GTTCACACATGATTCCTCCT+TGG 0.536512 2:-25469994 MsG0280008101.01.T01:CDS
TTTAGTAGGAAGATTAGGAC+AGG 0.539074 2:-25470041 MsG0280008101.01.T01:CDS
GTTTGACAGTCTTGCAACCA+TGG 0.540242 2:-25470290 MsG0280008101.01.T01:CDS
GTGTATCCAATCCAACCATT+AGG 0.541391 2:+25469692 None:intergenic
CACAAAGAAGCTATTGGAGA+TGG 0.542271 2:-25471101 MsG0280008101.01.T01:CDS
TTACTAGACCCTATAGCAGT+TGG 0.542343 2:-25470526 MsG0280008101.01.T01:CDS
ATACTTCTTGAATGCGTACT+CGG 0.547711 2:-25470655 MsG0280008101.01.T01:CDS
TTTGTTGCTTTCATAGCAGC+CGG 0.549975 2:-25470682 MsG0280008101.01.T01:CDS
CCGCCAAAGGACATACCAAT+CGG 0.552434 2:-25470250 MsG0280008101.01.T01:CDS
ATAGTTGTTCCAGCTTTGAA+AGG 0.559794 2:+25471050 None:intergenic
TGACTCAGCAAAGGAAGCCA+AGG 0.560474 2:-25469619 MsG0280008101.01.T01:CDS
AGTGGAACTCCCCAAAACCT+TGG 0.567646 2:+25469602 None:intergenic
AATTGTATCCATCTTTGAGA+TGG 0.571253 2:+25470548 None:intergenic
CAAGAAGCTCATAACCATGC+AGG 0.571449 2:-25470838 MsG0280008101.01.T01:CDS
ATTGACAAAGATGGCAACCA+TGG 0.573355 2:+25469575 None:intergenic
GATGGCAACCATGGAACAAG+TGG 0.573911 2:+25469584 None:intergenic
AATATGCACTTTGATAATGT+TGG 0.578928 2:-25469495 MsG0280008101.01.T01:CDS
ATGGGAATTTCAGCTTATTG+GGG 0.579215 2:-25469722 MsG0280008101.01.T01:CDS
TGAGTCACAGAGAGACTGCT+AGG 0.580292 2:-25469397 MsG0280008101.01.T01:CDS
CCTTCTTACCAAAAGTGCAA+TGG 0.582665 2:+25469823 None:intergenic
GAGAGACTGCTAGGATTGAA+GGG 0.588598 2:-25469388 MsG0280008101.01.T01:CDS
GCCTAATTCAATTCTTAGGT+AGG 0.592021 2:+25470708 None:intergenic
AGACTATTGCTGCTCCTGCA+TGG 0.592496 2:+25470824 None:intergenic
CTTAAGCTCATGTGTCTCAG+TGG 0.594867 2:+25470963 None:intergenic
ATTGCATCGGCAGTCAACAT+AGG 0.606531 2:-25470439 MsG0280008101.01.T01:CDS
TCATATTCGTAATCATTGCA+GGG 0.613623 2:-25470411 MsG0280008101.01.T01:CDS
ATTGAACCAATCAAGCCGAT+TGG 0.614297 2:+25470235 None:intergenic
TAAACAAGATTTCTTGCCAG+AGG 0.615202 2:-25471076 MsG0280008101.01.T01:CDS
GTTGAAGTTCCAGCTGCAGG+TGG 0.622133 2:-25470739 MsG0280008101.01.T01:CDS
TATGGCTCATCAACAAGAGA+AGG 0.624424 2:-25469435 MsG0280008101.01.T01:CDS
GGATGTACAAGCGCGAACCA+AGG 0.667921 2:+25469977 None:intergenic
TGTACAAGCGCGAACCAAGG+AGG 0.678479 2:+25469980 None:intergenic
GCTGATCATTGCAATCATTG+CGG 0.733326 2:+25470489 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAAAATGTCTCAAT+TGG - Chr2:25469575-25469594 MsG0280008101.01.T01:CDS 20.0%
!!! GCAACAAATATTTTTCTTAT+GGG - Chr2:25470948-25470967 MsG0280008101.01.T01:CDS 20.0%
!!! TATGAAGCTTTTATAAGATT+TGG - Chr2:25470981-25471000 MsG0280008101.01.T01:CDS 20.0%
!!! TGCAACAAATATTTTTCTTA+TGG - Chr2:25470947-25470966 MsG0280008101.01.T01:CDS 20.0%
! AAATACACAGATATAGATAC+AGG - Chr2:25470342-25470361 MsG0280008101.01.T01:CDS 25.0%
! AGAGTTGAAAAAAACCAAAT+TGG + Chr2:25470843-25470862 None:intergenic 25.0%
! TCTACATTCAACTTATGATA+TGG - Chr2:25471046-25471065 MsG0280008101.01.T01:CDS 25.0%
! TTAACTCCATAAGGTAAAAA+AGG + Chr2:25470144-25470163 None:intergenic 25.0%
!! TATTTTTCTTATGGGATCTT+TGG - Chr2:25470956-25470975 MsG0280008101.01.T01:CDS 25.0%
!! TTGGTTTACTATGTTTTCTT+TGG - Chr2:25471023-25471042 MsG0280008101.01.T01:CDS 25.0%
!! TTTTTACCTTATGGAGTTAA+AGG - Chr2:25470144-25470163 MsG0280008101.01.T01:CDS 25.0%
!!! AATATGCACTTTGATAATGT+TGG - Chr2:25471004-25471023 MsG0280008101.01.T01:CDS 25.0%
!!! ATTTGGTTTTTTTCAACTCT+TGG - Chr2:25470843-25470862 MsG0280008101.01.T01:CDS 25.0%
!!! TTTGGTTTTTTTCAACTCTT+GGG - Chr2:25470844-25470863 MsG0280008101.01.T01:CDS 25.0%
AATACACCTTTAACTCCATA+AGG + Chr2:25470153-25470172 None:intergenic 30.0%
AATGGGAATTTCAGCTTATT+GGG - Chr2:25470776-25470795 MsG0280008101.01.T01:CDS 30.0%
ATCATATTCGTAATCATTGC+AGG - Chr2:25470087-25470106 MsG0280008101.01.T01:CDS 30.0%
ATTCTTTACTTTGCATATGG+AGG - Chr2:25470186-25470205 MsG0280008101.01.T01:CDS 30.0%
GAAAAAATGTCTCAATTGGT+GGG - Chr2:25469579-25469598 MsG0280008101.01.T01:CDS 30.0%
GCAATTCTTTACTTTGCATA+TGG - Chr2:25470183-25470202 MsG0280008101.01.T01:CDS 30.0%
TCAGAAAGTTGGAATGAATT+GGG - Chr2:25470386-25470405 MsG0280008101.01.T01:CDS 30.0%
TCATATTCGTAATCATTGCA+GGG - Chr2:25470088-25470107 MsG0280008101.01.T01:CDS 30.0%
TGAAAAAATGTCTCAATTGG+TGG - Chr2:25469578-25469597 MsG0280008101.01.T01:CDS 30.0%
TTCAGAAAGTTGGAATGAAT+TGG - Chr2:25470385-25470404 MsG0280008101.01.T01:CDS 30.0%
TTCTTTACTTTGCATATGGA+GGG - Chr2:25470187-25470206 MsG0280008101.01.T01:CDS 30.0%
TTTGTTGCAATTGACAAAGA+TGG + Chr2:25470936-25470955 None:intergenic 30.0%
! AATCTTTTGGACGATTCAAA+AGG + Chr2:25469912-25469931 None:intergenic 30.0%
! AATTGTATCCATCTTTGAGA+TGG + Chr2:25469954-25469973 None:intergenic 30.0%
! ATCAGAAGTGTAGCATTTAT+CGG + Chr2:25470561-25470580 None:intergenic 30.0%
! GCAAAATATGTAGTAGCTTT+TGG - Chr2:25470408-25470427 MsG0280008101.01.T01:CDS 30.0%
!!! ATTTTTAGTTTCTTCAGCCA+TGG + Chr2:25470229-25470248 None:intergenic 30.0%
!!! CATATTTTTTGACTCAGCAA+AGG - Chr2:25470871-25470890 MsG0280008101.01.T01:CDS 30.0%
!!! TTGACACCTTTTTTACCTTA+TGG - Chr2:25470135-25470154 MsG0280008101.01.T01:CDS 30.0%
ACAAACATGGTTAAGGTTCA+AGG - Chr2:25469486-25469505 MsG0280008101.01.T01:CDS 35.0%
ACACTGTTACAGTTCCAATT+TGG - Chr2:25470826-25470845 MsG0280008101.01.T01:CDS 35.0%
AGAAACTAAAAATCCGCCAA+AGG - Chr2:25470236-25470255 MsG0280008101.01.T01:CDS 35.0%
AGTCGCCTAATTCAATTCTT+AGG + Chr2:25469798-25469817 None:intergenic 35.0%
ATACTTCTTGAATGCGTACT+CGG - Chr2:25469844-25469863 MsG0280008101.01.T01:CDS 35.0%
ATGAACCACAAAGAAGCTAT+TGG - Chr2:25469392-25469411 MsG0280008101.01.T01:CDS 35.0%
ATGGGAATTTCAGCTTATTG+GGG - Chr2:25470777-25470796 MsG0280008101.01.T01:CDS 35.0%
CAATGGGAATTTCAGCTTAT+TGG - Chr2:25470775-25470794 MsG0280008101.01.T01:CDS 35.0%
CTCTTTCACAAACATGGTTA+AGG - Chr2:25469479-25469498 MsG0280008101.01.T01:CDS 35.0%
GAAAAACTTCGCTTCTCAAT+TGG - Chr2:25470037-25470056 MsG0280008101.01.T01:CDS 35.0%
GCCTAATTCAATTCTTAGGT+AGG + Chr2:25469794-25469813 None:intergenic 35.0%
GCCTACCTAAGAATTGAATT+AGG - Chr2:25469790-25469809 MsG0280008101.01.T01:CDS 35.0%
TAAACAAGATTTCTTGCCAG+AGG - Chr2:25469423-25469442 MsG0280008101.01.T01:CDS 35.0%
TCAGTTGCATTTCAGAAAGT+TGG - Chr2:25470375-25470394 MsG0280008101.01.T01:CDS 35.0%
TGAAATTCCTGAAGCTACAT+AGG + Chr2:25469704-25469723 None:intergenic 35.0%
TTTAGTAGGAAGATTAGGAC+AGG - Chr2:25470458-25470477 MsG0280008101.01.T01:CDS 35.0%
! ATGACAACAGTGCTTTTAGT+AGG - Chr2:25470444-25470463 MsG0280008101.01.T01:CDS 35.0%
! CTCATTGTTGCTTCTTCAAT+GGG - Chr2:25470759-25470778 MsG0280008101.01.T01:CDS 35.0%
! GATGATATCCATTGCACTTT+TGG - Chr2:25470668-25470687 MsG0280008101.01.T01:CDS 35.0%
! GCATTCAAGAAGTATGTTAC+CGG + Chr2:25469839-25469858 None:intergenic 35.0%
! GTGCTTTTAGTAGGAAGATT+AGG - Chr2:25470453-25470472 MsG0280008101.01.T01:CDS 35.0%
! TCTCATTGTTGCTTCTTCAA+TGG - Chr2:25470758-25470777 MsG0280008101.01.T01:CDS 35.0%
!! ATAGTTGTTCCAGCTTTGAA+AGG + Chr2:25469452-25469471 None:intergenic 35.0%
!! GTAAGAAGGTACTATGTTAG+AGG - Chr2:25470690-25470709 MsG0280008101.01.T01:CDS 35.0%
!! TTGATTCGAAGCGAATCTTT+TGG + Chr2:25469925-25469944 None:intergenic 35.0%
!! TTTATCGGTGTTCCTGTTTT+CGG + Chr2:25470546-25470565 None:intergenic 35.0%
AAAGCACACCATCTCAAAGA+TGG - Chr2:25469943-25469962 MsG0280008101.01.T01:CDS 40.0%
ATTGAACCAATCAAGCCGAT+TGG + Chr2:25470267-25470286 None:intergenic 40.0%
ATTGACAAAGATGGCAACCA+TGG + Chr2:25470927-25470946 None:intergenic 40.0%
CACAAAGAAGCTATTGGAGA+TGG - Chr2:25469398-25469417 MsG0280008101.01.T01:CDS 40.0%
CACAGTCATCTATTGCTTGA+TGG - Chr2:25470296-25470315 MsG0280008101.01.T01:CDS 40.0%
CACATCCAAGCTAGTGAAAA+AGG + Chr2:25470607-25470626 None:intergenic 40.0%
CACCAAAGCCAAACCAAATT+AGG + Chr2:25469606-25469625 None:intergenic 40.0%
CATCTCCAATAGCTTCTTTG+TGG + Chr2:25469400-25469419 None:intergenic 40.0%
CTTCTGCTCTTTCACAAACA+TGG - Chr2:25469473-25469492 MsG0280008101.01.T01:CDS 40.0%
GCTGATCATTGCAATCATTG+CGG + Chr2:25470013-25470032 None:intergenic 40.0%
GCTTCTCAATTGGATTGCAT+CGG - Chr2:25470047-25470066 MsG0280008101.01.T01:CDS 40.0%
GTCTTATCCTATGTAGCTTC+AGG - Chr2:25469694-25469713 MsG0280008101.01.T01:CDS 40.0%
GTGTATCCAATCCAACCATT+AGG + Chr2:25470810-25470829 None:intergenic 40.0%
TATGGCTCATCAACAAGAGA+AGG - Chr2:25471064-25471083 MsG0280008101.01.T01:CDS 40.0%
TCAATTGGTGGGACCTAATT+TGG - Chr2:25469590-25469609 MsG0280008101.01.T01:CDS 40.0%
TTACTAGACCCTATAGCAGT+TGG - Chr2:25469973-25469992 MsG0280008101.01.T01:CDS 40.0%
TTTCAGCTTATTGGGGATTG+AGG - Chr2:25470784-25470803 MsG0280008101.01.T01:CDS 40.0%
! CCATTGCACTTTTGGTAAGA+AGG - Chr2:25470676-25470695 MsG0280008101.01.T01:CDS 40.0%
! CCTTCTTACCAAAAGTGCAA+TGG + Chr2:25470679-25470698 None:intergenic 40.0%
!! CATAGCCTTTTTCACTAGCT+TGG - Chr2:25470599-25470618 MsG0280008101.01.T01:CDS 40.0%
!! GACCTAATTTGGTTTGGCTT+TGG - Chr2:25469601-25469620 MsG0280008101.01.T01:CDS 40.0%
!! GTAGCTTTTGGTGCATTGAA+AGG - Chr2:25470420-25470439 MsG0280008101.01.T01:CDS 40.0%
!! TTTGTTGCTTTCATAGCAGC+CGG - Chr2:25469817-25469836 MsG0280008101.01.T01:CDS 40.0%
AAGCCGATTGGTATGTCCTT+TGG + Chr2:25470255-25470274 None:intergenic 45.0%
ACCAGAACACCAACTGCTAT+AGG + Chr2:25469985-25470004 None:intergenic 45.0%
AGAGAGACTGCTAGGATTGA+AGG - Chr2:25471110-25471129 MsG0280008101.01.T01:CDS 45.0%
CAAGAAGCTCATAACCATGC+AGG - Chr2:25469661-25469680 MsG0280008101.01.T01:CDS 45.0%
CAGAGGAATCCTTTCAAAGC+TGG - Chr2:25469440-25469459 MsG0280008101.01.T01:CDS 45.0%
CCAGAACACCAACTGCTATA+GGG + Chr2:25469984-25470003 None:intergenic 45.0%
CTTAAGCTCATGTGTCTCAG+TGG + Chr2:25469539-25469558 None:intergenic 45.0%
GAGAGACTGCTAGGATTGAA+GGG - Chr2:25471111-25471130 MsG0280008101.01.T01:CDS 45.0%
GCAGGAATCTTTGTGCTAAC+TGG - Chr2:25469637-25469656 MsG0280008101.01.T01:CDS 45.0%
GTGCAGCAGTATCAAGATCA+TGG - Chr2:25469869-25469888 MsG0280008101.01.T01:CDS 45.0%
GTTCACACATGATTCCTCCT+TGG - Chr2:25470505-25470524 MsG0280008101.01.T01:CDS 45.0%
GTTTGACAGTCTTGCAACCA+TGG - Chr2:25470209-25470228 MsG0280008101.01.T01:CDS 45.0%
TATTGGGGATTGAGGCCTAA+TGG - Chr2:25470792-25470811 MsG0280008101.01.T01:CDS 45.0%
TGGTGGGACCTAATTTGGTT+TGG - Chr2:25469595-25469614 MsG0280008101.01.T01:CDS 45.0%
TTGAGGCCTAATGGTTGGAT+TGG - Chr2:25470801-25470820 MsG0280008101.01.T01:CDS 45.0%
! AGCAAAGGAAGCCAAGGTTT+TGG - Chr2:25470886-25470905 MsG0280008101.01.T01:CDS 45.0%
! ATTGCATCGGCAGTCAACAT+AGG - Chr2:25470060-25470079 MsG0280008101.01.T01:CDS 45.0%
! CAAAGGAAGCCAAGGTTTTG+GGG - Chr2:25470888-25470907 MsG0280008101.01.T01:CDS 45.0%
! GCAAAGGAAGCCAAGGTTTT+GGG - Chr2:25470887-25470906 MsG0280008101.01.T01:CDS 45.0%
!! CAGCTTTGAAAGGATTCCTC+TGG + Chr2:25469442-25469461 None:intergenic 45.0%
!! GACATACCAATCGGCTTGAT+TGG - Chr2:25470258-25470277 MsG0280008101.01.T01:CDS 45.0%
!! TTTGGCTTTGGTGCAGTGAT+TGG - Chr2:25469613-25469632 MsG0280008101.01.T01:CDS 45.0%
AGACTATTGCTGCTCCTGCA+TGG + Chr2:25469678-25469697 None:intergenic 50.0%
AGTGGAACTCCCCAAAACCT+TGG + Chr2:25470900-25470919 None:intergenic 50.0%
CCGATTGGTATGTCCTTTGG+CGG + Chr2:25470252-25470271 None:intergenic 50.0%
CCGCCAAAGGACATACCAAT+CGG - Chr2:25470249-25470268 MsG0280008101.01.T01:CDS 50.0%
GATGGCAACCATGGAACAAG+TGG + Chr2:25470918-25470937 None:intergenic 50.0%
GCGCTTGTACATCCGAAAAC+AGG - Chr2:25470531-25470550 MsG0280008101.01.T01:CDS 50.0%
TGACTCAGCAAAGGAAGCCA+AGG - Chr2:25470880-25470899 MsG0280008101.01.T01:CDS 50.0%
TGAGTCACAGAGAGACTGCT+AGG - Chr2:25471102-25471121 MsG0280008101.01.T01:CDS 50.0%
! CCCTATAGCAGTTGGTGTTC+TGG - Chr2:25469981-25470000 MsG0280008101.01.T01:CDS 50.0%
! TTTGGTGCAGTGATTGGTGC+AGG - Chr2:25469619-25469638 MsG0280008101.01.T01:CDS 50.0%
CTCAGTGGCATCGTCTGATC+TGG + Chr2:25469524-25469543 None:intergenic 55.0%
GCAAATGAACCACCTGCAGC+TGG + Chr2:25469772-25469791 None:intergenic 55.0%
GCTGTTGAAGTTCCAGCTGC+AGG - Chr2:25469757-25469776 MsG0280008101.01.T01:CDS 55.0%
GGATGTACAAGCGCGAACCA+AGG + Chr2:25470525-25470544 None:intergenic 55.0%
GGGGAGTTCCACTTGTTCCA+TGG - Chr2:25470907-25470926 MsG0280008101.01.T01:CDS 55.0%
GGGGATTGAGGCCTAATGGT+TGG - Chr2:25470796-25470815 MsG0280008101.01.T01:CDS 55.0%
GTTGAAGTTCCAGCTGCAGG+TGG - Chr2:25469760-25469779 MsG0280008101.01.T01:CDS 55.0%
TGTACAAGCGCGAACCAAGG+AGG + Chr2:25470522-25470541 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 25469382 25471139 25469382 ID=MsG0280008101.01;Name=MsG0280008101.01
Chr2 mRNA 25469382 25471139 25469382 ID=MsG0280008101.01.T01;Parent=MsG0280008101.01;Name=MsG0280008101.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|585
Chr2 exon 25469382 25471139 25469382 ID=MsG0280008101.01.T01:exon:34924;Parent=MsG0280008101.01.T01
Chr2 CDS 25469382 25471139 25469382 ID=MsG0280008101.01.T01:cds;Parent=MsG0280008101.01.T01
Gene Sequence

>MsG0280008101.01.T01

ATGGATGACAATGAACCACAAAGAAGCTATTGGAGATGGAGTAAACAAGATTTCTTGCCAGAGGAATCCTTTCAAAGCTGGAACAACTATGCTTCTGCTCTTTCACAAACATGGTTAAGGTTCAAGGATCGTGTTCAGACCAGATCAGACGATGCCACTGAGACACATGAGCTTAAGAAACAAAGTGAGAATGAAATGAAAAAATGTCTCAATTGGTGGGACCTAATTTGGTTTGGCTTTGGTGCAGTGATTGGTGCAGGAATCTTTGTGCTAACTGGTCAAGAAGCTCATAACCATGCAGGAGCAGCAATAGTCTTATCCTATGTAGCTTCAGGAATTTCAGCAATGCTTTCTGTTTTTTGTTACACAGAATTTGCTGTTGAAGTTCCAGCTGCAGGTGGTTCATTTGCCTACCTAAGAATTGAATTAGGCGACTTTGTTGCTTTCATAGCAGCCGGTAACATACTTCTTGAATGCGTACTCGGAAGTGCAGCAGTATCAAGATCATGGACATCTTACTTCACAAGCCTTTTGAATCGTCCAAAAGATTCGCTTCGAATCAAAGCACACCATCTCAAAGATGGATACAATTTACTAGACCCTATAGCAGTTGGTGTTCTGGTAATTGCCGCAATGATTGCAATGATCAGCACAAGAAAAACTTCGCTTCTCAATTGGATTGCATCGGCAGTCAACATAGGTGTAATCATATTCGTAATCATTGCAGGGTTCTCTCATGCAAATACATCAAACTTGACACCTTTTTTACCTTATGGAGTTAAAGGTGTATTTCAAGCATCTGCAATTCTTTACTTTGCATATGGAGGGTTTGACAGTCTTGCAACCATGGCTGAAGAAACTAAAAATCCGCCAAAGGACATACCAATCGGCTTGATTGGTTCAATGTCTGTGATCACAGTCATCTATTGCTTGATGGCACTTTCACTAAGCATGATGCAGAAATACACAGATATAGATACAGGCGCAGCTTTCTCAGTTGCATTTCAGAAAGTTGGAATGAATTGGGCAAAATATGTAGTAGCTTTTGGTGCATTGAAAGGTATGACAACAGTGCTTTTAGTAGGAAGATTAGGACAGGCACGTTATATCGCTCACATCGCACGTTCACACATGATTCCTCCTTGGTTCGCGCTTGTACATCCGAAAACAGGAACACCGATAAATGCTACACTTCTGATTACAATTTCAAGTGCTTGCATAGCCTTTTTCACTAGCTTGGATGTGTTATCAAGTTTGATATCAGTAAGCACACTTTTCGTTTTCGTGATGATATCCATTGCACTTTTGGTAAGAAGGTACTATGTTAGAGGAGTTACAACAAGAGAGAATCAGTTGAAGCTAGTTATATTTTTGATTCTCATTGTTGCTTCTTCAATGGGAATTTCAGCTTATTGGGGATTGAGGCCTAATGGTTGGATTGGATACACTGTTACAGTTCCAATTTGGTTTTTTTCAACTCTTGGGATGTCATATTTTTTGACTCAGCAAAGGAAGCCAAGGTTTTGGGGAGTTCCACTTGTTCCATGGTTGCCATCTTTGTCAATTGCAACAAATATTTTTCTTATGGGATCTTTGGAATATGAAGCTTTTATAAGATTTGGAATATGCACTTTGATAATGTTGGTTTACTATGTTTTCTTTGGTCTACATTCAACTTATGATATGGCTCATCAACAAGAGAAGGTGCAGACAATCAATGTGAGTCACAGAGAGACTGCTAGGATTGAAGGGCCTTAA

Protein sequence

>MsG0280008101.01.T01

MDDNEPQRSYWRWSKQDFLPEESFQSWNNYASALSQTWLRFKDRVQTRSDDATETHELKKQSENEMKKCLNWWDLIWFGFGAVIGAGIFVLTGQEAHNHAGAAIVLSYVASGISAMLSVFCYTEFAVEVPAAGGSFAYLRIELGDFVAFIAAGNILLECVLGSAAVSRSWTSYFTSLLNRPKDSLRIKAHHLKDGYNLLDPIAVGVLVIAAMIAMISTRKTSLLNWIASAVNIGVIIFVIIAGFSHANTSNLTPFLPYGVKGVFQASAILYFAYGGFDSLATMAEETKNPPKDIPIGLIGSMSVITVIYCLMALSLSMMQKYTDIDTGAAFSVAFQKVGMNWAKYVVAFGALKGMTTVLLVGRLGQARYIAHIARSHMIPPWFALVHPKTGTPINATLLITISSACIAFFTSLDVLSSLISVSTLFVFVMISIALLVRRYYVRGVTTRENQLKLVIFLILIVASSMGISAYWGLRPNGWIGYTVTVPIWFFSTLGMSYFLTQQRKPRFWGVPLVPWLPSLSIATNIFLMGSLEYEAFIRFGICTLIMLVYYVFFGLHSTYDMAHQQEKVQTINVSHRETARIEGP*