AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012063.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012063.01.T01 MTR_3g013430 97.859 467 10 0 1 467 1 467 0.0 948
MsG0380012063.01.T01 MTR_8g041330 74.438 356 88 1 113 465 19 374 0.0 554
MsG0380012063.01.T01 MTR_6g039820 66.667 327 108 1 128 453 17 343 1.04e-168 478
MsG0380012063.01.T01 MTR_1g097850 64.431 343 107 2 113 454 2 330 2.07e-166 473
MsG0380012063.01.T01 MTR_1g097850 64.122 262 79 2 113 373 2 249 9.16e-120 351
MsG0380012063.01.T01 MTR_6g040230 66.239 234 77 1 220 453 265 496 1.37e-112 341
MsG0380012063.01.T01 MTR_2g054370 35.312 320 192 5 140 453 56 366 2.64e-55 189
MsG0380012063.01.T01 MTR_8g041220 74.118 85 22 0 356 440 47 131 2.42e-41 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012063.01.T01 AT1G74320 68.235 340 108 0 115 454 7 346 1.61e-179 506
MsG0380012063.01.T01 AT4G09760 63.030 330 119 3 126 453 14 342 7.75e-158 451
MsG0380012063.01.T01 AT4G09760 63.030 330 119 3 126 453 14 342 7.75e-158 451
MsG0380012063.01.T01 AT1G71697 62.310 329 122 2 126 452 16 344 2.90e-156 447
MsG0380012063.01.T01 AT4G09760 58.294 211 85 3 126 334 14 223 8.18e-85 261
MsG0380012063.01.T01 AT4G09760 56.633 196 82 3 126 319 14 208 7.76e-75 234
MsG0380012063.01.T01 AT2G26830 36.254 331 192 6 131 453 45 364 1.87e-60 202

Find 120 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCTGTACCTGGAATTT+TGG 0.087534 3:+10393245 MsG0380012063.01.T01:five_prime_UTR
CGACAAGGAAATCTCTATTT+TGG 0.136724 3:+10394539 MsG0380012063.01.T01:CDS
CCACCTGCTTGATTGCTTAT+AGG 0.171347 3:-10393363 None:intergenic
CGGTCAGCTTTGCTGCTTAC+AGG 0.183900 3:-10393627 None:intergenic
TGATATCATTAGCAGGTAAA+TGG 0.242873 3:+10393676 MsG0380012063.01.T01:CDS
ATCATGGAACTCCTTCATTT+TGG 0.268402 3:-10394282 None:intergenic
TGCCACAATGATTTGCAATA+TGG 0.280053 3:+10394600 MsG0380012063.01.T01:CDS
GGTACTGAAGTTACAGATAA+AGG 0.285206 3:+10393205 MsG0380012063.01.T01:intron
GTAGGAGTCGCCTGGTTTAC+AGG 0.321895 3:-10393330 None:intergenic
TCCGGCCACCGCTTTGCGTT+TGG 0.324940 3:+10391792 MsG0380012063.01.T01:five_prime_UTR
GTACCCTCAGGGTTATTAAA+AGG 0.333817 3:-10397335 None:intergenic
CAAAGAGAAACTCACTATTA+TGG 0.357350 3:-10394658 None:intergenic
AGAATCTCCTTTGCTTCTGC+TGG 0.358458 3:-10393654 None:intergenic
GGGCCTTTGGGGAATAATTT+CGG 0.370418 3:+10396296 MsG0380012063.01.T01:CDS
AGGAGCGTGAAAGATTTGTT+AGG 0.370918 3:+10395922 MsG0380012063.01.T01:CDS
CCACCTAAAGTGTCATTTAC+GGG 0.371609 3:-10393438 None:intergenic
ACAGAGGTTTCAAGAGTATT+GGG 0.371611 3:+10397274 MsG0380012063.01.T01:CDS
GTGAAAAGAAAGCCAATCTT+TGG 0.373883 3:+10394318 MsG0380012063.01.T01:CDS
CCTCACGAAAGGTTCTTGTT+AGG 0.384064 3:+10393799 MsG0380012063.01.T01:CDS
ACAGGGGTTTCAATGGCATC+TGG 0.397243 3:-10393609 None:intergenic
GGCAGCTATAAGAGCAGAAA+TGG 0.397416 3:-10394261 None:intergenic
AACAGAGGTTTCAAGAGTAT+TGG 0.403796 3:+10397273 MsG0380012063.01.T01:CDS
ACTAGATGCAAATGTGTTAC+AGG 0.416349 3:+10393707 MsG0380012063.01.T01:CDS
AAGGTTCTTGTTAGGATCTA+CGG 0.422916 3:+10393807 MsG0380012063.01.T01:CDS
ACCACCTAAAGTGTCATTTA+CGG 0.432131 3:-10393439 None:intergenic
CACCAGGCATATCTAGATCA+TGG 0.437311 3:-10394298 None:intergenic
ACTTCTCAACTTCTTGTAGT+AGG 0.438883 3:-10396248 None:intergenic
CAGTAAATCATTTCTGTACC+TGG 0.440560 3:+10393237 MsG0380012063.01.T01:five_prime_UTR
GGTCAGGGGCCTCGTCTACT+AGG 0.440821 3:+10393897 MsG0380012063.01.T01:CDS
GCATCAGAGCTTAGAAGATA+AGG 0.442159 3:-10397305 None:intergenic
GTACTGAAGTTACAGATAAA+GGG 0.447759 3:+10393206 MsG0380012063.01.T01:five_prime_UTR
GCTGCTTACAGGGGTTTCAA+TGG 0.448428 3:-10393616 None:intergenic
GATATCATTAGCAGGTAAAT+GGG 0.461907 3:+10393677 MsG0380012063.01.T01:CDS
GATTCTTCCGCAATGGGTGC+AGG 0.463434 3:+10393267 MsG0380012063.01.T01:exon
GGTCAGCTTTGCTGCTTACA+GGG 0.464141 3:-10393626 None:intergenic
AGGTTCTTGTTAGGATCTAC+GGG 0.464881 3:+10393808 MsG0380012063.01.T01:CDS
CCTCAATGTAGGCCAAAGAT+TGG 0.466655 3:-10394330 None:intergenic
TTTAATAACCCTGAGGGTAC+AGG 0.469258 3:+10397338 MsG0380012063.01.T01:CDS
GCGGAAGAATCCAAAATTCC+AGG 0.478773 3:-10393255 None:intergenic
TCCAAACGCAAAGCGGTGGC+CGG 0.479233 3:-10391793 None:intergenic
GTACATGTCAAAGAATGGTC+AGG 0.485242 3:+10393881 MsG0380012063.01.T01:CDS
CACAATTGAATTTGACTACA+AGG 0.487535 3:+10397241 MsG0380012063.01.T01:CDS
TTGCTATAATCAAGAATATG+AGG 0.491630 3:-10395800 None:intergenic
TTCACCGGCGGCAATATCTC+CGG 0.492488 3:+10391774 MsG0380012063.01.T01:five_prime_UTR
GAATATGAGGCGTTTCTGTA+TGG 0.492535 3:-10395787 None:intergenic
GAGGTTTCCTCAGTTGTAGC+TGG 0.492695 3:-10393780 None:intergenic
TAGGATCTACGGGGAGGGTG+TGG 0.493067 3:+10393818 MsG0380012063.01.T01:CDS
AATGATACAGCAGGTGATGA+TGG 0.495476 3:+10393510 MsG0380012063.01.T01:CDS
GGAGCGTGAAAGATTTGTTA+GGG 0.498076 3:+10395923 MsG0380012063.01.T01:CDS
TGCTCCACTTCACTCTCACT+TGG 0.498911 3:-10396225 None:intergenic
TTGATAGGGATGATGAAATA+CGG 0.500021 3:+10393850 MsG0380012063.01.T01:CDS
TTTGTCTTCTCCAAAAGAAG+TGG 0.502871 3:+10394494 MsG0380012063.01.T01:CDS
TCAGGCTCGCATCAACGGAT+AGG 0.503411 3:+10394573 MsG0380012063.01.T01:CDS
AGGGCATATTTGAAGACCTC+AGG 0.504968 3:+10395942 MsG0380012063.01.T01:CDS
CTTGATTATAGCAAATATCC+TGG 0.508261 3:+10395809 MsG0380012063.01.T01:CDS
ATGAGGTATTTGAAATAAAG+TGG 0.508683 3:+10393757 MsG0380012063.01.T01:CDS
AATCAAATACCTGTACCCTC+AGG 0.510529 3:-10397347 None:intergenic
CCAATCTTTGGCCTACATTG+AGG 0.512237 3:+10394330 MsG0380012063.01.T01:CDS
GCCGCTAAATTTATTCGTTG+AGG 0.518459 3:+10391819 MsG0380012063.01.T01:five_prime_UTR
CAGGCTCGCATCAACGGATA+GGG 0.520005 3:+10394574 MsG0380012063.01.T01:CDS
TCGCAGCCATCTCACAAAAG+TGG 0.525991 3:-10395760 None:intergenic
AACCCCGTAAATGACACTTT+AGG 0.528458 3:+10393435 MsG0380012063.01.T01:CDS
TTTGCTATATCATACGCTAC+AGG 0.530263 3:-10395737 None:intergenic
TTTGAGTACATGTCAAAGAA+TGG 0.530571 3:+10393876 MsG0380012063.01.T01:CDS
TCTTATAGCTGCCAAAATGA+AGG 0.531214 3:+10394271 MsG0380012063.01.T01:CDS
TTACAGGTGATCCCTCTCAA+GGG 0.532125 3:+10393723 MsG0380012063.01.T01:CDS
AGCTGTCAGGCTCGCATCAA+CGG 0.536968 3:+10394568 MsG0380012063.01.T01:CDS
TGAAGAGTTTATACATGCAC+GGG 0.537689 3:+10393941 MsG0380012063.01.T01:CDS
TTATGTACATACCTCAATGT+AGG 0.540731 3:-10394341 None:intergenic
CTTGTTAGGATCTACGGGGA+GGG 0.546574 3:+10393813 MsG0380012063.01.T01:CDS
TCTCCTTTGCTTCTGCTGGA+AGG 0.547716 3:-10393650 None:intergenic
GAGATTCTGATATCATTAGC+AGG 0.548741 3:+10393669 MsG0380012063.01.T01:CDS
GCAGGTGATGATGGAAAAGA+AGG 0.548923 3:+10393519 MsG0380012063.01.T01:CDS
ACCTCAACGAATAAATTTAG+CGG 0.553998 3:-10391820 None:intergenic
CACTATTATGGTCACAGAGT+TGG 0.554152 3:-10394646 None:intergenic
TTGAAGAGTTTATACATGCA+CGG 0.561716 3:+10393940 MsG0380012063.01.T01:CDS
TTTCTGTAGTAGGAGTCGCC+TGG 0.566230 3:-10393338 None:intergenic
TACATGTCAAAGAATGGTCA+GGG 0.568152 3:+10393882 MsG0380012063.01.T01:CDS
TTCCATGATCTAGATATGCC+TGG 0.568317 3:+10394296 MsG0380012063.01.T01:CDS
TGCTGAGAATCCTGTAAACC+AGG 0.576627 3:+10393320 MsG0380012063.01.T01:CDS
ATCAAATACCTGTACCCTCA+GGG 0.578244 3:-10397346 None:intergenic
GCTATAAGAGCAGAAATGGA+TGG 0.579204 3:-10394257 None:intergenic
GTTACAGGTGATCCCTCTCA+AGG 0.579430 3:+10393722 MsG0380012063.01.T01:CDS
CCGCCTTCCAGCAGAAGCAA+AGG 0.580944 3:+10393647 MsG0380012063.01.T01:CDS
AGAACCAAGTGAGAGTGAAG+TGG 0.582495 3:+10396221 MsG0380012063.01.T01:CDS
CACCTAAAGTGTCATTTACG+GGG 0.582742 3:-10393437 None:intergenic
GGTTCTCTTGACAGACGTTG+AGG 0.584712 3:+10395902 MsG0380012063.01.T01:intron
AATTCTACAAATGATACAGC+AGG 0.584713 3:+10393501 MsG0380012063.01.T01:CDS
ATCTTCTCCTGCACCCATTG+CGG 0.587678 3:-10393274 None:intergenic
CCTATAAGCAATCAAGCAGG+TGG 0.589660 3:+10393363 MsG0380012063.01.T01:CDS
AAAGTGGCCAGCTACAACTG+AGG 0.589696 3:+10393773 MsG0380012063.01.T01:CDS
GTCAGCTTTGCTGCTTACAG+GGG 0.606553 3:-10393625 None:intergenic
TCAGGGTTATTAAAAGGAGA+AGG 0.608507 3:-10397329 None:intergenic
TATAAGCAATCAAGCAGGTG+GGG 0.609550 3:+10393365 MsG0380012063.01.T01:CDS
TACCATATTGCAAATCATTG+TGG 0.610437 3:-10394602 None:intergenic
CTTCAGAAATTGGCTTAGTG+AGG 0.612289 3:+10394464 MsG0380012063.01.T01:intron
AACTGAGGAAACCTCACGAA+AGG 0.614934 3:+10393788 MsG0380012063.01.T01:CDS
CCTTTGCTTCTGCTGGAAGG+CGG 0.617396 3:-10393647 None:intergenic
TTATTTGGACACGGTCGACA+AGG 0.618896 3:+10394524 MsG0380012063.01.T01:CDS
CGAATCCAAACGCAAAGCGG+TGG 0.619383 3:-10391797 None:intergenic
GTTGCAAAAGACCAAGCAGT+TGG 0.619982 3:+10393405 MsG0380012063.01.T01:CDS
AATCCTATAAGCAATCAAGC+AGG 0.622217 3:+10393360 MsG0380012063.01.T01:CDS
CTCTCTCTCAACTTCACCGG+CGG 0.625705 3:+10391762 MsG0380012063.01.T01:five_prime_UTR
CTATAAGCAATCAAGCAGGT+GGG 0.632457 3:+10393364 MsG0380012063.01.T01:CDS
GGTGCTATGAAAGACAAAGC+AGG 0.639091 3:+10393540 MsG0380012063.01.T01:CDS
CCCGTAAATGACACTTTAGG+TGG 0.644090 3:+10393438 MsG0380012063.01.T01:CDS
CCTAACAAGAACCTTTCGTG+AGG 0.644921 3:-10393799 None:intergenic
TACAGGTGATCCCTCTCAAG+GGG 0.646995 3:+10393724 MsG0380012063.01.T01:CDS
TCTTGTTAGGATCTACGGGG+AGG 0.648442 3:+10393812 MsG0380012063.01.T01:CDS
GGTTTCAAGAGTATTGGGCA+AGG 0.650192 3:+10397279 MsG0380012063.01.T01:CDS
GTGGCCGGAGATATTGCCGC+CGG 0.651449 3:-10391778 None:intergenic
ATCATTAGCAGGTAAATGGG+AGG 0.658690 3:+10393680 MsG0380012063.01.T01:CDS
ATACCGAAATTATTCCCCAA+AGG 0.681258 3:-10396299 None:intergenic
CGGCGAATCCAAACGCAAAG+CGG 0.681648 3:-10391800 None:intergenic
GCAGGTGAAGATGACAAACA+AGG 0.687986 3:+10393558 MsG0380012063.01.T01:CDS
GTAAAACGTCCTAGTAGACG+AGG 0.694555 3:-10393906 None:intergenic
ACAAGGAGTATGCGAAACAG+AGG 0.696997 3:+10397258 MsG0380012063.01.T01:CDS
ACATGTCAAAGAATGGTCAG+GGG 0.725728 3:+10393883 MsG0380012063.01.T01:CDS
ACAGGTGATCCCTCTCAAGG+GGG 0.737784 3:+10393725 MsG0380012063.01.T01:CDS
GGTTCTTGTTAGGATCTACG+GGG 0.808372 3:+10393809 MsG0380012063.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTAAAAAAAATGAAAAAA+GGG + Chr3:10395081-10395100 MsG0380012063.01.T01:intron 10.0%
!! TTTGTAAAAAAAATGAAAAA+AGG + Chr3:10395080-10395099 MsG0380012063.01.T01:intron 10.0%
!!! TGTTCTTTTTTTTTTTTTTT+GGG + Chr3:10395998-10396017 MsG0380012063.01.T01:intron 10.0%
!!! TTGTTCTTTTTTTTTTTTTT+TGG + Chr3:10395997-10396016 MsG0380012063.01.T01:intron 10.0%
!! ACATTAAATCATAAGATATT+TGG - Chr3:10395679-10395698 None:intergenic 15.0%
!! ATGTTAGTATGATATAAATT+AGG - Chr3:10392860-10392879 None:intergenic 15.0%
!! ATTCATAATTATATGAATGA+TGG - Chr3:10396141-10396160 None:intergenic 15.0%
!! GTTGCAAAAATAAAAATAAA+AGG - Chr3:10396539-10396558 None:intergenic 15.0%
!! TATCAATAATACATATTCTA+AGG - Chr3:10392756-10392775 None:intergenic 15.0%
!! TGTTAGTATGATATAAATTA+GGG - Chr3:10392859-10392878 None:intergenic 15.0%
!!! AAGTTTCTAGAAAATTATTT+TGG + Chr3:10396901-10396920 MsG0380012063.01.T01:intron 15.0%
!!! AATATGTATTATTGATAATG+TGG + Chr3:10392759-10392778 MsG0380012063.01.T01:intron 15.0%
!!! AATTTTTTTGACAAAACAAA+AGG - Chr3:10394929-10394948 None:intergenic 15.0%
!!! ACATTTTTTACTTTTAAAAC+AGG - Chr3:10395187-10395206 None:intergenic 15.0%
!!! AGTTTCTAGAAAATTATTTT+GGG + Chr3:10396902-10396921 MsG0380012063.01.T01:intron 15.0%
!!! ATTTTTTTGACAAAACAAAA+GGG - Chr3:10394928-10394947 None:intergenic 15.0%
!!! CATTTTTTACTTTTAAAACA+GGG - Chr3:10395186-10395205 None:intergenic 15.0%
!!! CTTTTGTAATTTTAAATGTT+TGG + Chr3:10397130-10397149 MsG0380012063.01.T01:intron 15.0%
!!! GTTTTTTAACATCATTTAAA+TGG + Chr3:10392326-10392345 MsG0380012063.01.T01:intron 15.0%
!!! TTTAAAATTGTGTACATATT+GGG + Chr3:10395474-10395493 MsG0380012063.01.T01:intron 15.0%
!!! TTTATAATGCATCAATTTTA+TGG - Chr3:10394060-10394079 None:intergenic 15.0%
!!! TTTTAAAATTGTGTACATAT+TGG + Chr3:10395473-10395492 MsG0380012063.01.T01:intron 15.0%
!!! TTTTTTATTCTATATGTTGT+TGG + Chr3:10392017-10392036 MsG0380012063.01.T01:intron 15.0%
!! AAAAAAATTGTCAACGAAAA+AGG - Chr3:10394958-10394977 None:intergenic 20.0%
!! AATAAACCTATCTGTATTTA+TGG + Chr3:10395337-10395356 MsG0380012063.01.T01:intron 20.0%
!! AATATGAATTAACCATAAGT+GGG + Chr3:10397067-10397086 MsG0380012063.01.T01:intron 20.0%
!! ATTATTGTTAAAAAGAAGAC+AGG - Chr3:10392974-10392993 None:intergenic 20.0%
!! CAAAAATAAAAATAAAAGGC+GGG - Chr3:10396535-10396554 None:intergenic 20.0%
!! GAAATCATAAAAGAATTAGT+TGG - Chr3:10393088-10393107 None:intergenic 20.0%
!! GCAAAAATAAAAATAAAAGG+CGG - Chr3:10396536-10396555 None:intergenic 20.0%
!! TAAAAGAATTAGTTGGTTAA+TGG - Chr3:10393081-10393100 None:intergenic 20.0%
!! TACAGAGATATTAATCAATT+TGG + Chr3:10392208-10392227 MsG0380012063.01.T01:intron 20.0%
!! TCAATGAACAAATAAAACAA+AGG - Chr3:10395565-10395584 None:intergenic 20.0%
!!! AACATTTTTGTCAGTAAAAA+GGG - Chr3:10394902-10394921 None:intergenic 20.0%
!!! AATTTTCTAGAAACTTAGAA+GGG - Chr3:10396897-10396916 None:intergenic 20.0%
!!! AGAAATGTATTTTATCTTGT+TGG + Chr3:10396504-10396523 MsG0380012063.01.T01:intron 20.0%
!!! ATTATATAATTAGTCTGCAA+AGG - Chr3:10394720-10394739 None:intergenic 20.0%
!!! GAATGATGATTCTTTATTTT+TGG - Chr3:10395314-10395333 None:intergenic 20.0%
!!! TAACATTTTTGTCAGTAAAA+AGG - Chr3:10394903-10394922 None:intergenic 20.0%
!!! TAATTTTCTAGAAACTTAGA+AGG - Chr3:10396898-10396917 None:intergenic 20.0%
!!! TGTATCATTTGTAGAATTTT+CGG - Chr3:10393499-10393518 None:intergenic 20.0%
!!! TTGTAATTTTAAATGTTTGG+CGG + Chr3:10397133-10397152 MsG0380012063.01.T01:intron 20.0%
! ACTAGTATCACTTCAAATTT+AGG + Chr3:10394080-10394099 MsG0380012063.01.T01:intron 25.0%
! AGTTATTTAACAAACACACT+AGG + Chr3:10396404-10396423 MsG0380012063.01.T01:intron 25.0%
! ATGAACAAATAAAACAAAGG+AGG - Chr3:10395562-10395581 None:intergenic 25.0%
! ATGCTTATGAATTATGATGA+AGG + Chr3:10391881-10391900 MsG0380012063.01.T01:intron 25.0%
! ATGTGAAAATAATTAGTCAC+AGG - Chr3:10395878-10395897 None:intergenic 25.0%
! ATTAGAAGAACAAAATCAAC+AGG - Chr3:10392627-10392646 None:intergenic 25.0%
! ATTATTCTTCTTTGTACTCT+TGG + Chr3:10396350-10396369 MsG0380012063.01.T01:intron 25.0%
! CATTAAAATACAGAAAACCA+TGG - Chr3:10396685-10396704 None:intergenic 25.0%
! GAATATGAATTAACCATAAG+TGG + Chr3:10397066-10397085 MsG0380012063.01.T01:intron 25.0%
! GTTATAAGATTATGATGCTA+AGG + Chr3:10391966-10391985 MsG0380012063.01.T01:intron 25.0%
! TACAAACAAAATTCTTCCAT+AGG - Chr3:10395066-10395085 None:intergenic 25.0%
! TATTTCAATGCTTCAGAAAT+TGG + Chr3:10394454-10394473 MsG0380012063.01.T01:intron 25.0%
! TGGCAAAAAAAAAATAACGA+AGG - Chr3:10395659-10395678 None:intergenic 25.0%
! TTACAAAAGAAATTGCATTG+TGG - Chr3:10397119-10397138 None:intergenic 25.0%
! TTATGAATGACCTTAAGAAA+TGG + Chr3:10396153-10396172 MsG0380012063.01.T01:intron 25.0%
! TTGCTATAATCAAGAATATG+AGG - Chr3:10395803-10395822 None:intergenic 25.0%
! TTTGAGAATTACAAAGGATT+GGG + Chr3:10396928-10396947 MsG0380012063.01.T01:intron 25.0%
! TTTGTTCCAAATCATGAAAT+AGG - Chr3:10396061-10396080 None:intergenic 25.0%
!! ATATGAATGATGGAATACAA+GGG - Chr3:10396131-10396150 None:intergenic 25.0%
!! ATGAGGTATTTGAAATAAAG+TGG + Chr3:10393757-10393776 MsG0380012063.01.T01:CDS 25.0%
!! ATGTTTCAAATGAAGTTGAT+GGG + Chr3:10392434-10392453 MsG0380012063.01.T01:intron 25.0%
!! GATAATTATTTCTTCAGAAC+AGG - Chr3:10394765-10394784 None:intergenic 25.0%
!! TATATGAATGATGGAATACA+AGG - Chr3:10396132-10396151 None:intergenic 25.0%
!! TGTGACTAATTATTTTCACA+TGG + Chr3:10395877-10395896 MsG0380012063.01.T01:intron 25.0%
!! TGTGGAAATTTTCTTTGATA+GGG + Chr3:10393836-10393855 MsG0380012063.01.T01:CDS 25.0%
!! TTTGGAACAAAAAAGTTGTA+TGG + Chr3:10396070-10396089 MsG0380012063.01.T01:intron 25.0%
!!! AAACGCACAACTTTTTTTAT+AGG - Chr3:10392886-10392905 None:intergenic 25.0%
!!! GATTCTTTATTTTTGGACAA+GGG - Chr3:10395307-10395326 None:intergenic 25.0%
!!! GTTTTATTTGTTCATTGACA+TGG + Chr3:10395567-10395586 MsG0380012063.01.T01:intron 25.0%
!!! TGATTCTTTATTTTTGGACA+AGG - Chr3:10395308-10395327 None:intergenic 25.0%
!!! TTTACTTTTAAAACAGGGTA+AGG - Chr3:10395181-10395200 None:intergenic 25.0%
!!! TTTTGAGAATTACAAAGGAT+TGG + Chr3:10396927-10396946 MsG0380012063.01.T01:intron 25.0%
AACTAACAGTCCATTTCTTA+AGG - Chr3:10396166-10396185 None:intergenic 30.0%
AATTCTACAAATGATACAGC+AGG + Chr3:10393501-10393520 MsG0380012063.01.T01:CDS 30.0%
ACCTATTAGTCAAGGATAAT+AGG + Chr3:10392785-10392804 MsG0380012063.01.T01:intron 30.0%
ACCTATTATCCTTGACTAAT+AGG - Chr3:10392789-10392808 None:intergenic 30.0%
ACCTCAACGAATAAATTTAG+CGG - Chr3:10391823-10391842 None:intergenic 30.0%
ACGATGAAAATAATTACCTG+AGG - Chr3:10395961-10395980 None:intergenic 30.0%
AGTTTCTGTTCCTGATATTA+TGG + Chr3:10396182-10396201 MsG0380012063.01.T01:intron 30.0%
ATAAATTCAGAAGGGAAACA+TGG - Chr3:10394207-10394226 None:intergenic 30.0%
ATAGTAAATACCCTGATCAT+TGG - Chr3:10396570-10396589 None:intergenic 30.0%
ATATGTTTCCACAATACTGT+TGG - Chr3:10396862-10396881 None:intergenic 30.0%
ATCAATGTTGTGTAACTCAA+AGG - Chr3:10395279-10395298 None:intergenic 30.0%
ATGAAAAGGAGTCAAAAATC+AGG - Chr3:10396837-10396856 None:intergenic 30.0%
ATTTCAACCATTGATATCAC+CGG + Chr3:10392273-10392292 MsG0380012063.01.T01:intron 30.0%
CAAAGAGAAACTCACTATTA+TGG - Chr3:10394661-10394680 None:intergenic 30.0%
CACAATTGAATTTGACTACA+AGG + Chr3:10397241-10397260 MsG0380012063.01.T01:CDS 30.0%
CAGATATATCAGATAAACCT+CGG + Chr3:10392168-10392187 MsG0380012063.01.T01:intron 30.0%
CTCAAACGTTTGACAAAAAA+AGG + Chr3:10392569-10392588 MsG0380012063.01.T01:intron 30.0%
CTTATTTATTCACAAGCACT+TGG - Chr3:10392695-10392714 None:intergenic 30.0%
CTTGATTATAGCAAATATCC+TGG + Chr3:10395809-10395828 MsG0380012063.01.T01:CDS 30.0%
GATATATCTGATATCCTAAC+CGG - Chr3:10392158-10392177 None:intergenic 30.0%
GATATCATTAGCAGGTAAAT+GGG + Chr3:10393677-10393696 MsG0380012063.01.T01:CDS 30.0%
GATGTTTCAAATGAAGTTGA+TGG + Chr3:10392433-10392452 MsG0380012063.01.T01:intron 30.0%
GATTATCCAAACAAATTGCT+TGG + Chr3:10396997-10397016 MsG0380012063.01.T01:intron 30.0%
GTACTGAAGTTACAGATAAA+GGG + Chr3:10393206-10393225 MsG0380012063.01.T01:five_prime_UTR 30.0%
GTTTCTGTTCCTGATATTAT+GGG + Chr3:10396183-10396202 MsG0380012063.01.T01:intron 30.0%
TAATTTATATCCGTCTCTGT+TGG + Chr3:10392926-10392945 MsG0380012063.01.T01:intron 30.0%
TACCATATTGCAAATCATTG+TGG - Chr3:10394605-10394624 None:intergenic 30.0%
TCAATGTTGTGTAACTCAAA+GGG - Chr3:10395278-10395297 None:intergenic 30.0%
TCAGAAAATAAACGAGATAG+TGG + Chr3:10392993-10393012 MsG0380012063.01.T01:intron 30.0%
TCAGCACTTATCTTTATGTT+GGG + Chr3:10396781-10396800 MsG0380012063.01.T01:intron 30.0%
TGATATCATTAGCAGGTAAA+TGG + Chr3:10393676-10393695 MsG0380012063.01.T01:CDS 30.0%
TGATGACCTATTTCATGATT+TGG + Chr3:10396052-10396071 MsG0380012063.01.T01:intron 30.0%
TTATGTACATACCTCAATGT+AGG - Chr3:10394344-10394363 None:intergenic 30.0%
TTCAGCACTTATCTTTATGT+TGG + Chr3:10396780-10396799 MsG0380012063.01.T01:intron 30.0%
TTGAAGAGTTTATACATGCA+CGG + Chr3:10393940-10393959 MsG0380012063.01.T01:CDS 30.0%
TTGAGAATTACAAAGGATTG+GGG + Chr3:10396929-10396948 MsG0380012063.01.T01:intron 30.0%
TTGATAGGGATGATGAAATA+CGG + Chr3:10393850-10393869 MsG0380012063.01.T01:CDS 30.0%
TTTGAGTACATGTCAAAGAA+TGG + Chr3:10393876-10393895 MsG0380012063.01.T01:CDS 30.0%
! AAACTACAACCAAGTACTTT+TGG + Chr3:10397156-10397175 MsG0380012063.01.T01:intron 30.0%
! AATAGTCCAAGCAATTTGTT+TGG - Chr3:10397006-10397025 None:intergenic 30.0%
! ACTAATTATTTTCACATGGC+TGG + Chr3:10395881-10395900 MsG0380012063.01.T01:intron 30.0%
! AGAAGTGGAAGCTTTTTATT+TGG + Chr3:10394509-10394528 MsG0380012063.01.T01:CDS 30.0%
! CAAAATTCTTCCATAGGTTT+TGG - Chr3:10395060-10395079 None:intergenic 30.0%
! CTTATAGGATTTTCTGTAGT+AGG - Chr3:10393351-10393370 None:intergenic 30.0%
! GTGTGGAAATTTTCTTTGAT+AGG + Chr3:10393835-10393854 MsG0380012063.01.T01:CDS 30.0%
! TAAAAAGCTTCCACTTCTTT+TGG - Chr3:10394507-10394526 None:intergenic 30.0%
! TTTTGGTAAAGTTCAGTTGA+AGG - Chr3:10395043-10395062 None:intergenic 30.0%
!! ATAAGTGCTGAAGATTCAAT+GGG - Chr3:10396772-10396791 None:intergenic 30.0%
!! GGAAATCTCTATTTTGGAAA+AGG + Chr3:10394545-10394564 MsG0380012063.01.T01:CDS 30.0%
!! TATTAATCAATTTGGTGCTG+AGG + Chr3:10392216-10392235 MsG0380012063.01.T01:intron 30.0%
!! TGTTTCAAATGAAGTTGATG+GGG + Chr3:10392435-10392454 MsG0380012063.01.T01:intron 30.0%
AAAATGAAAAAAGGGCAACC+CGG + Chr3:10395089-10395108 MsG0380012063.01.T01:intron 35.0%
AACCTATCTGTATTTATGGC+CGG + Chr3:10395341-10395360 MsG0380012063.01.T01:intron 35.0%
AACTGTTCAAACCAATGATC+AGG + Chr3:10396556-10396575 MsG0380012063.01.T01:intron 35.0%
AAGGTTCTTGTTAGGATCTA+CGG + Chr3:10393807-10393826 MsG0380012063.01.T01:CDS 35.0%
AATCCTATAAGCAATCAAGC+AGG + Chr3:10393360-10393379 MsG0380012063.01.T01:CDS 35.0%
ACTAGATGCAAATGTGTTAC+AGG + Chr3:10393707-10393726 MsG0380012063.01.T01:CDS 35.0%
ACTGTTCAAACCAATGATCA+GGG + Chr3:10396557-10396576 MsG0380012063.01.T01:intron 35.0%
ACTTCTCAACTTCTTGTAGT+AGG - Chr3:10396251-10396270 None:intergenic 35.0%
AGAAACTTAGAAGGGTAGAA+GGG - Chr3:10396889-10396908 None:intergenic 35.0%
AGCGTCTGATAAATTCAGAA+GGG - Chr3:10394215-10394234 None:intergenic 35.0%
ATACCGAAATTATTCCCCAA+AGG - Chr3:10396302-10396321 None:intergenic 35.0%
ATAGACTGACAAAAGAGAAG+TGG + Chr3:10396449-10396468 MsG0380012063.01.T01:intron 35.0%
ATCTTCTGATTATCTTGCTC+AGG + Chr3:10397208-10397227 MsG0380012063.01.T01:intron 35.0%
CAATACTGTTGGTCATGAAA+AGG - Chr3:10396851-10396870 None:intergenic 35.0%
CAATGTTGTGTAACTCAAAG+GGG - Chr3:10395277-10395296 None:intergenic 35.0%
CAGTAAATCATTTCTGTACC+TGG + Chr3:10393237-10393256 MsG0380012063.01.T01:five_prime_UTR 35.0%
CTGAACTTTACCAAAACCTA+TGG + Chr3:10395047-10395066 MsG0380012063.01.T01:intron 35.0%
GAGATTCTGATATCATTAGC+AGG + Chr3:10393669-10393688 MsG0380012063.01.T01:CDS 35.0%
GAGTGTCTATTGTACAGTTT+AGG + Chr3:10392948-10392967 MsG0380012063.01.T01:intron 35.0%
GTGAAAAGAAAGCCAATCTT+TGG + Chr3:10394318-10394337 MsG0380012063.01.T01:CDS 35.0%
TACATGTCAAAGAATGGTCA+GGG + Chr3:10393882-10393901 MsG0380012063.01.T01:CDS 35.0%
TAGAAACTTAGAAGGGTAGA+AGG - Chr3:10396890-10396909 None:intergenic 35.0%
TAGTCTGAGAAATGATGTTG+AGG - Chr3:10394431-10394450 None:intergenic 35.0%
TCAGGGTTATTAAAAGGAGA+AGG - Chr3:10397332-10397351 None:intergenic 35.0%
TCTTATAGCTGCCAAAATGA+AGG + Chr3:10394271-10394290 MsG0380012063.01.T01:CDS 35.0%
TCTTCTGATTATCTTGCTCA+GGG + Chr3:10397209-10397228 MsG0380012063.01.T01:intron 35.0%
TCTTTATGTTGGGTCATTAG+AGG + Chr3:10396791-10396810 MsG0380012063.01.T01:intron 35.0%
TGAAGAGTTTATACATGCAC+GGG + Chr3:10393941-10393960 MsG0380012063.01.T01:CDS 35.0%
TTATCTGTAACTTCAGTACC+TGG - Chr3:10393205-10393224 None:intergenic 35.0%
TTATGAACCGTAACACTTCA+GGG - Chr3:10394124-10394143 None:intergenic 35.0%
TTATTGACCAAGTGTTAGAC+TGG + Chr3:10396969-10396988 MsG0380012063.01.T01:intron 35.0%
TTCTTCTTTGTACTCTTGGA+TGG + Chr3:10396354-10396373 MsG0380012063.01.T01:intron 35.0%
TTTATGAACCGTAACACTTC+AGG - Chr3:10394125-10394144 None:intergenic 35.0%
TTTCATGACCAACAGTATTG+TGG + Chr3:10396851-10396870 MsG0380012063.01.T01:intron 35.0%
TTTGTCTTCTCCAAAAGAAG+TGG + Chr3:10394494-10394513 MsG0380012063.01.T01:CDS 35.0%
! AACAGAGGTTTCAAGAGTAT+TGG + Chr3:10397273-10397292 MsG0380012063.01.T01:CDS 35.0%
! AACTGATTCACTCAGTCATT+TGG + Chr3:10395604-10395623 MsG0380012063.01.T01:intron 35.0%
! AATTTTGGATTCTTCCGCAA+TGG + Chr3:10393260-10393279 MsG0380012063.01.T01:exon 35.0%
! ACTCGCAAATCATCTTTTCT+GGG + Chr3:10396275-10396294 MsG0380012063.01.T01:CDS 35.0%
! ATCAGGGTATTTACTATTCG+TGG + Chr3:10396573-10396592 MsG0380012063.01.T01:intron 35.0%
! ATCATGGAACTCCTTCATTT+TGG - Chr3:10394285-10394304 None:intergenic 35.0%
! ATTTTGGATTCTTCCGCAAT+GGG + Chr3:10393261-10393280 MsG0380012063.01.T01:exon 35.0%
! CATTTCTGTACCTGGAATTT+TGG + Chr3:10393245-10393264 MsG0380012063.01.T01:five_prime_UTR 35.0%
! CGACAAGGAAATCTCTATTT+TGG + Chr3:10394539-10394558 MsG0380012063.01.T01:CDS 35.0%
! CTACTAGGACGTTTTACAAA+TGG + Chr3:10393912-10393931 MsG0380012063.01.T01:CDS 35.0%
! GGTACTGAAGTTACAGATAA+AGG + Chr3:10393205-10393224 MsG0380012063.01.T01:intron 35.0%
! TCTCCTTTTAATAACCCTGA+GGG + Chr3:10397332-10397351 MsG0380012063.01.T01:CDS 35.0%
! TGCCACAATGATTTGCAATA+TGG + Chr3:10394600-10394619 MsG0380012063.01.T01:CDS 35.0%
! TGGTCTTTTGCAACATTTAC+AGG - Chr3:10393399-10393418 None:intergenic 35.0%
! TTCTCCTTTTAATAACCCTG+AGG + Chr3:10397331-10397350 MsG0380012063.01.T01:CDS 35.0%
! TTTGCTATATCATACGCTAC+AGG - Chr3:10395740-10395759 None:intergenic 35.0%
!! ACAGAGGTTTCAAGAGTATT+GGG + Chr3:10397274-10397293 MsG0380012063.01.T01:CDS 35.0%
!! ACCACCTAAAGTGTCATTTA+CGG - Chr3:10393442-10393461 None:intergenic 35.0%
!! GATAAGTGCTGAAGATTCAA+TGG - Chr3:10396773-10396792 None:intergenic 35.0%
!! GGAAGCTTTTTATTTGGACA+CGG + Chr3:10394515-10394534 MsG0380012063.01.T01:CDS 35.0%
!! GGGCATTTTGAGAATTACAA+AGG + Chr3:10396922-10396941 MsG0380012063.01.T01:intron 35.0%
!! TAAACGAGATAGTGGATCAT+TGG + Chr3:10393001-10393020 MsG0380012063.01.T01:intron 35.0%
!! TCTTCGAAACCAAAAGTACT+TGG - Chr3:10397168-10397187 None:intergenic 35.0%
!! TTTTGGAGAAGACAAACGTT+TGG - Chr3:10394490-10394509 None:intergenic 35.0%
!!! AGGGAGCTATGTTAGTTTTT+GGG - Chr3:10392840-10392859 None:intergenic 35.0%
!!! TAGGGAGCTATGTTAGTTTT+TGG - Chr3:10392841-10392860 None:intergenic 35.0%
!!! TCTTTATTTTTGGACAAGGG+AGG - Chr3:10395304-10395323 None:intergenic 35.0%
AAATAACTTCTCCCTCTCCA+AGG - Chr3:10396392-10396411 None:intergenic 40.0%
AACAAAGCCGGTGATATCAA+TGG - Chr3:10392283-10392302 None:intergenic 40.0%
AACCCCGTAAATGACACTTT+AGG + Chr3:10393435-10393454 MsG0380012063.01.T01:CDS 40.0%
AATAGACACTCCAACAGAGA+CGG - Chr3:10392939-10392958 None:intergenic 40.0%
AATATAGAGATGCACGACAC+TGG + Chr3:10392050-10392069 MsG0380012063.01.T01:intron 40.0%
AATATCCTGGTATGAACCTG+TGG + Chr3:10395822-10395841 MsG0380012063.01.T01:intron 40.0%
AATGATACAGCAGGTGATGA+TGG + Chr3:10393510-10393529 MsG0380012063.01.T01:CDS 40.0%
ACATGTCAAAGAATGGTCAG+GGG + Chr3:10393883-10393902 MsG0380012063.01.T01:CDS 40.0%
AGCTAGCTATTCATCAACCA+TGG + Chr3:10396665-10396684 MsG0380012063.01.T01:intron 40.0%
AGGTTCTTGTTAGGATCTAC+GGG + Chr3:10393808-10393827 MsG0380012063.01.T01:CDS 40.0%
AGTCAAAAATCAGGTGAGAC+AGG - Chr3:10396828-10396847 None:intergenic 40.0%
ATAGGTGTTCCACGTTATCA+AGG + Chr3:10392803-10392822 MsG0380012063.01.T01:intron 40.0%
ATCATTAGCAGGTAAATGGG+AGG + Chr3:10393680-10393699 MsG0380012063.01.T01:CDS 40.0%
ATCCGGCCATAAATACAGAT+AGG - Chr3:10395346-10395365 None:intergenic 40.0%
ATTGATGAGAAGCCCACTTA+TGG - Chr3:10397082-10397101 None:intergenic 40.0%
CAATTTGCGATCAACAAAGC+CGG - Chr3:10392295-10392314 None:intergenic 40.0%
CACTATTATGGTCACAGAGT+TGG - Chr3:10394649-10394668 None:intergenic 40.0%
CAGCGTCTGATAAATTCAGA+AGG - Chr3:10394216-10394235 None:intergenic 40.0%
CCCACATTCAAAATGCTATC+CGG - Chr3:10395363-10395382 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - Chr3:10395155-10395174 None:intergenic 40.0%
CTATAAGCAATCAAGCAGGT+GGG + Chr3:10393364-10393383 MsG0380012063.01.T01:CDS 40.0%
CTTTGTACTCTTGGATGGTT+TGG + Chr3:10396359-10396378 MsG0380012063.01.T01:intron 40.0%
GAATTAGTTGGTTAATGGCG+AGG - Chr3:10393076-10393095 None:intergenic 40.0%
GATATTATGGGATTGAACGC+AGG + Chr3:10396195-10396214 MsG0380012063.01.T01:intron 40.0%
GATTCACTCAGTCATTTGGT+TGG + Chr3:10395608-10395627 MsG0380012063.01.T01:intron 40.0%
GCACATCGAGTTCATAAGTT+TGG - Chr3:10394175-10394194 None:intergenic 40.0%
GCATCAGAGCTTAGAAGATA+AGG - Chr3:10397308-10397327 None:intergenic 40.0%
GCCGCTAAATTTATTCGTTG+AGG + Chr3:10391819-10391838 MsG0380012063.01.T01:five_prime_UTR 40.0%
GCGTTCAATCCCATAATATC+AGG - Chr3:10396195-10396214 None:intergenic 40.0%
GCTATAAGAGCAGAAATGGA+TGG - Chr3:10394260-10394279 None:intergenic 40.0%
GTACATGTCAAAGAATGGTC+AGG + Chr3:10393881-10393900 MsG0380012063.01.T01:CDS 40.0%
GTACCCTCAGGGTTATTAAA+AGG - Chr3:10397338-10397357 None:intergenic 40.0%
GTAGATGATTCTCAGCAAGA+AGG - Chr3:10395437-10395456 None:intergenic 40.0%
GTTGCTATGTTTCGAGATCA+TGG + Chr3:10395205-10395224 MsG0380012063.01.T01:intron 40.0%
TATAAGCAATCAAGCAGGTG+GGG + Chr3:10393365-10393384 MsG0380012063.01.T01:CDS 40.0%
TATGATTTCTACCCCTTCCT+TGG + Chr3:10393099-10393118 MsG0380012063.01.T01:intron 40.0%
TCAAAGTCCAGTCTAACACT+TGG - Chr3:10396979-10396998 None:intergenic 40.0%
TGGTAAAGTTCAGTTGAAGG+AGG - Chr3:10395040-10395059 None:intergenic 40.0%
TGTCAGTCTATCAAAACCCT+TGG - Chr3:10396440-10396459 None:intergenic 40.0%
TGTGGAACACCTATTAGTCA+AGG + Chr3:10392777-10392796 MsG0380012063.01.T01:intron 40.0%
TGTGTACATATTGGGAGTCA+AGG + Chr3:10395482-10395501 MsG0380012063.01.T01:intron 40.0%
TTCCATGATCTAGATATGCC+TGG + Chr3:10394296-10394315 MsG0380012063.01.T01:CDS 40.0%
! AAACCTCGGATCAAAAGTGT+CGG + Chr3:10392182-10392201 MsG0380012063.01.T01:intron 40.0%
! ACTAGGTTTTTGTGCACCAA+GGG + Chr3:10396421-10396440 MsG0380012063.01.T01:intron 40.0%
! AGGAGCGTGAAAGATTTGTT+AGG + Chr3:10395922-10395941 MsG0380012063.01.T01:CDS 40.0%
! CACTCGCAAATCATCTTTTC+TGG + Chr3:10396274-10396293 MsG0380012063.01.T01:CDS 40.0%
! CCGGATAGCATTTTGAATGT+GGG + Chr3:10395360-10395379 MsG0380012063.01.T01:intron 40.0%
! CGGATAGCATTTTGAATGTG+GGG + Chr3:10395361-10395380 MsG0380012063.01.T01:intron 40.0%
! CTCGCAAATCATCTTTTCTG+GGG + Chr3:10396276-10396295 MsG0380012063.01.T01:CDS 40.0%
! CTTCAGAAATTGGCTTAGTG+AGG + Chr3:10394464-10394483 MsG0380012063.01.T01:intron 40.0%
! GAATATGAGGCGTTTCTGTA+TGG - Chr3:10395790-10395809 None:intergenic 40.0%
! TTGTTCACCCTGAAGTGTTA+CGG + Chr3:10394114-10394133 MsG0380012063.01.T01:intron 40.0%
! TTTAATAACCCTGAGGGTAC+AGG + Chr3:10397338-10397357 MsG0380012063.01.T01:CDS 40.0%
!! AGCAAACCACTTTTGTGAGA+TGG + Chr3:10395754-10395773 MsG0380012063.01.T01:CDS 40.0%
!! ATTTTGGAAAAGGAGCTGTC+AGG + Chr3:10394555-10394574 MsG0380012063.01.T01:CDS 40.0%
!! CACCTAAAGTGTCATTTACG+GGG - Chr3:10393440-10393459 None:intergenic 40.0%
!! CCACCTAAAGTGTCATTTAC+GGG - Chr3:10393441-10393460 None:intergenic 40.0%
!! GAGAGAGCGTCTTTAAACAT+TGG + Chr3:10392457-10392476 MsG0380012063.01.T01:intron 40.0%
!! GATGAATAGCTAGCTCTGTA+TGG - Chr3:10396660-10396679 None:intergenic 40.0%
!! GGAGCGTGAAAGATTTGTTA+GGG + Chr3:10395923-10395942 MsG0380012063.01.T01:CDS 40.0%
!!! AGATTGGCTTTCTTTTCACC+AGG - Chr3:10394317-10394336 None:intergenic 40.0%
!!! AGGAGCAAGGTTTTAAGTTG+TGG + Chr3:10392236-10392255 MsG0380012063.01.T01:intron 40.0%
!!! GGGAGCTATGTTAGTTTTTG+GGG - Chr3:10392839-10392858 None:intergenic 40.0%
AACTGAGGAAACCTCACGAA+AGG + Chr3:10393788-10393807 MsG0380012063.01.T01:CDS 45.0%
ACTATTCGTGGCTCGTTTCA+TGG + Chr3:10396585-10396604 MsG0380012063.01.T01:intron 45.0%
AGAACCAAGTGAGAGTGAAG+TGG + Chr3:10396221-10396240 MsG0380012063.01.T01:CDS 45.0%
AGAATCTCCTTTGCTTCTGC+TGG - Chr3:10393657-10393676 None:intergenic 45.0%
AGGGCATATTTGAAGACCTC+AGG + Chr3:10395942-10395961 MsG0380012063.01.T01:CDS 45.0%
ATTCACAAGCACTTGGCACA+TGG - Chr3:10392688-10392707 None:intergenic 45.0%
CACCAGGCATATCTAGATCA+TGG - Chr3:10394301-10394320 None:intergenic 45.0%
CCAATCTTTGGCCTACATTG+AGG + Chr3:10394330-10394349 MsG0380012063.01.T01:CDS 45.0%
CCACCTGCTTGATTGCTTAT+AGG - Chr3:10393366-10393385 None:intergenic 45.0%
CCCGTAAATGACACTTTAGG+TGG + Chr3:10393438-10393457 MsG0380012063.01.T01:CDS 45.0%
CCTAACAAGAACCTTTCGTG+AGG - Chr3:10393802-10393821 None:intergenic 45.0%
CCTATAAGCAATCAAGCAGG+TGG + Chr3:10393363-10393382 MsG0380012063.01.T01:CDS 45.0%
CCTCAATGTAGGCCAAAGAT+TGG - Chr3:10394333-10394352 None:intergenic 45.0%
CCTCACGAAAGGTTCTTGTT+AGG + Chr3:10393799-10393818 MsG0380012063.01.T01:CDS 45.0%
CTATTCGTGGCTCGTTTCAT+GGG + Chr3:10396586-10396605 MsG0380012063.01.T01:intron 45.0%
CTTCAGTACCTGGAAAAGCA+AGG - Chr3:10393195-10393214 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAAA+CGG - Chr3:10391751-10391770 None:intergenic 45.0%
GCAGGTGAAGATGACAAACA+AGG + Chr3:10393558-10393577 MsG0380012063.01.T01:CDS 45.0%
GCGGAAGAATCCAAAATTCC+AGG - Chr3:10393258-10393277 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - Chr3:10395156-10395175 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - Chr3:10395159-10395178 None:intergenic 45.0%
GGAAACCAACAACACTCATC+AGG - Chr3:10395416-10395435 None:intergenic 45.0%
GGCAGCTATAAGAGCAGAAA+TGG - Chr3:10394264-10394283 None:intergenic 45.0%
GGTTCTTGTTAGGATCTACG+GGG + Chr3:10393809-10393828 MsG0380012063.01.T01:CDS 45.0%
GTAAAACGTCCTAGTAGACG+AGG - Chr3:10393909-10393928 None:intergenic 45.0%
GTGTTCCACGTTATCAAGGA+GGG + Chr3:10392807-10392826 MsG0380012063.01.T01:intron 45.0%
GTTCAGTTGAAGGAGGAAAC+AGG - Chr3:10395033-10395052 None:intergenic 45.0%
GTTGCAAAAGACCAAGCAGT+TGG + Chr3:10393405-10393424 MsG0380012063.01.T01:CDS 45.0%
GTTGTGTAACTCAAAGGGGA+GGG - Chr3:10395273-10395292 None:intergenic 45.0%
TATCAGCGATGCCTATGTGT+CGG - Chr3:10392090-10392109 None:intergenic 45.0%
TCTCTCTCTCTCAACTTCAC+CGG + Chr3:10391759-10391778 MsG0380012063.01.T01:five_prime_UTR 45.0%
TCTGATATCCTAACCGGACA+CGG - Chr3:10392152-10392171 None:intergenic 45.0%
TGAATGCTTCAGAAAGCCAC+AGG - Chr3:10395841-10395860 None:intergenic 45.0%
TGCTGAGAATCCTGTAAACC+AGG + Chr3:10393320-10393339 MsG0380012063.01.T01:CDS 45.0%
TGTTGTGTAACTCAAAGGGG+AGG - Chr3:10395274-10395293 None:intergenic 45.0%
TTACAGGTGATCCCTCTCAA+GGG + Chr3:10393723-10393742 MsG0380012063.01.T01:CDS 45.0%
TTATTTGGACACGGTCGACA+AGG + Chr3:10394524-10394543 MsG0380012063.01.T01:CDS 45.0%
TTCACAAGCACTTGGCACAT+GGG - Chr3:10392687-10392706 None:intergenic 45.0%
TTGTGTAACTCAAAGGGGAG+GGG - Chr3:10395272-10395291 None:intergenic 45.0%
! ACAAGGAGTATGCGAAACAG+AGG + Chr3:10397258-10397277 MsG0380012063.01.T01:CDS 45.0%
! CACTAGGTTTTTGTGCACCA+AGG + Chr3:10396420-10396439 MsG0380012063.01.T01:intron 45.0%
! GCCGGATAGCATTTTGAATG+TGG + Chr3:10395359-10395378 MsG0380012063.01.T01:intron 45.0%
! GGGCCTTTGGGGAATAATTT+CGG + Chr3:10396296-10396315 MsG0380012063.01.T01:CDS 45.0%
! GGTGCTATGAAAGACAAAGC+AGG + Chr3:10393540-10393559 MsG0380012063.01.T01:CDS 45.0%
! TACAGCCTGATGAGTGTTGT+TGG + Chr3:10395408-10395427 MsG0380012063.01.T01:intron 45.0%
!! GCAGGTGATGATGGAAAAGA+AGG + Chr3:10393519-10393538 MsG0380012063.01.T01:CDS 45.0%
!! GGTTTCAAGAGTATTGGGCA+AGG + Chr3:10397279-10397298 MsG0380012063.01.T01:CDS 45.0%
!! TGAACGATCCTTGCTTTTCC+AGG + Chr3:10393184-10393203 MsG0380012063.01.T01:intron 45.0%
!! TTGAACCCTCCTTGATAACG+TGG - Chr3:10392815-10392834 None:intergenic 45.0%
!!! ATCATCTTTTCTGGGGCCTT+TGG + Chr3:10396283-10396302 MsG0380012063.01.T01:CDS 45.0%
!!! TCATCTTTTCTGGGGCCTTT+GGG + Chr3:10396284-10396303 MsG0380012063.01.T01:CDS 45.0%
!!! ATATTTAATTTAATTTTCTT+TGG + Chr3:10394738-10394757 MsG0380012063.01.T01:intron 5.0%
AAAGTGGCCAGCTACAACTG+AGG + Chr3:10393773-10393792 MsG0380012063.01.T01:CDS 50.0%
ACAGGGGTTTCAATGGCATC+TGG - Chr3:10393612-10393631 None:intergenic 50.0%
ATCTTCTCCTGCACCCATTG+CGG - Chr3:10393277-10393296 None:intergenic 50.0%
CAAGGGGGCAATGACAAATG+AGG + Chr3:10393740-10393759 MsG0380012063.01.T01:CDS 50.0%
CTTCCTCCTTCTCCAAGGAA+GGG - Chr3:10393114-10393133 None:intergenic 50.0%
CTTGTTAGGATCTACGGGGA+GGG + Chr3:10393813-10393832 MsG0380012063.01.T01:CDS 50.0%
GAAAGCCACAGGTTCATACC+AGG - Chr3:10395830-10395849 None:intergenic 50.0%
GAGGTTTCCTCAGTTGTAGC+TGG - Chr3:10393783-10393802 None:intergenic 50.0%
GCTGCTTACAGGGGTTTCAA+TGG - Chr3:10393619-10393638 None:intergenic 50.0%
GGTGTTCCACGTTATCAAGG+AGG + Chr3:10392806-10392825 MsG0380012063.01.T01:intron 50.0%
GGTTCTCTTGACAGACGTTG+AGG + Chr3:10395902-10395921 MsG0380012063.01.T01:intron 50.0%
GTTACAGGTGATCCCTCTCA+AGG + Chr3:10393722-10393741 MsG0380012063.01.T01:CDS 50.0%
TACAGGTGATCCCTCTCAAG+GGG + Chr3:10393724-10393743 MsG0380012063.01.T01:CDS 50.0%
TCAAAGGGGAGGGGATTTAC+AGG - Chr3:10395263-10395282 None:intergenic 50.0%
TCCTTGGAGAAGGAGGAAGA+GGG + Chr3:10393115-10393134 MsG0380012063.01.T01:intron 50.0%
TCGCAGCCATCTCACAAAAG+TGG - Chr3:10395763-10395782 None:intergenic 50.0%
TCTCCTTTGCTTCTGCTGGA+AGG - Chr3:10393653-10393672 None:intergenic 50.0%
TCTTCCTCCTTCTCCAAGGA+AGG - Chr3:10393115-10393134 None:intergenic 50.0%
TCTTGTTAGGATCTACGGGG+AGG + Chr3:10393812-10393831 MsG0380012063.01.T01:CDS 50.0%
TGCTCCACTTCACTCTCACT+TGG - Chr3:10396228-10396247 None:intergenic 50.0%
TTCCTCCTTCTCCAAGGAAG+GGG - Chr3:10393113-10393132 None:intergenic 50.0%
TTCCTTGGAGAAGGAGGAAG+AGG + Chr3:10393114-10393133 MsG0380012063.01.T01:intron 50.0%
TTCTACCCCTTCCTTGGAGA+AGG + Chr3:10393105-10393124 MsG0380012063.01.T01:intron 50.0%
TTGTCATTGCCCCCTTGAGA+GGG - Chr3:10393737-10393756 None:intergenic 50.0%
TTTCTGTAGTAGGAGTCGCC+TGG - Chr3:10393341-10393360 None:intergenic 50.0%
TTTGTCATTGCCCCCTTGAG+AGG - Chr3:10393738-10393757 None:intergenic 50.0%
! GGTCAGCTTTGCTGCTTACA+GGG - Chr3:10393629-10393648 None:intergenic 50.0%
! GGTTTTCTGCACCAACTGCT+TGG - Chr3:10393419-10393438 None:intergenic 50.0%
! GTCAGCTTTGCTGCTTACAG+GGG - Chr3:10393628-10393647 None:intergenic 50.0%
! TCACCGACACTTTTGATCCG+AGG - Chr3:10392188-10392207 None:intergenic 50.0%
! TTGGCTTGAGACCTTGGAGA+GGG + Chr3:10396378-10396397 MsG0380012063.01.T01:intron 50.0%
!! CAATTTGGTGCTGAGGAGCA+AGG + Chr3:10392223-10392242 MsG0380012063.01.T01:intron 50.0%
!! GATGGTTTGGCTTGAGACCT+TGG + Chr3:10396372-10396391 MsG0380012063.01.T01:intron 50.0%
!! TTTGGCTTGAGACCTTGGAG+AGG + Chr3:10396377-10396396 MsG0380012063.01.T01:intron 50.0%
!!! CATCTTTTCTGGGGCCTTTG+GGG + Chr3:10396285-10396304 MsG0380012063.01.T01:CDS 50.0%
AAATCACGTGCGTCCGTGTC+CGG + Chr3:10392136-10392155 MsG0380012063.01.T01:intron 55.0%
ACAGGTGATCCCTCTCAAGG+GGG + Chr3:10393725-10393744 MsG0380012063.01.T01:CDS 55.0%
AGCTGTCAGGCTCGCATCAA+CGG + Chr3:10394568-10394587 MsG0380012063.01.T01:CDS 55.0%
CAGGCTCGCATCAACGGATA+GGG + Chr3:10394574-10394593 MsG0380012063.01.T01:CDS 55.0%
CCTTTGCTTCTGCTGGAAGG+CGG - Chr3:10393650-10393669 None:intergenic 55.0%
CGAATCCAAACGCAAAGCGG+TGG - Chr3:10391800-10391819 None:intergenic 55.0%
CGACACAGACACCGACACAT+AGG + Chr3:10392076-10392095 MsG0380012063.01.T01:intron 55.0%
CGGCGAATCCAAACGCAAAG+CGG - Chr3:10391803-10391822 None:intergenic 55.0%
CTCTCTCTCAACTTCACCGG+CGG + Chr3:10391762-10391781 MsG0380012063.01.T01:five_prime_UTR 55.0%
GATTCTTCCGCAATGGGTGC+AGG + Chr3:10393267-10393286 MsG0380012063.01.T01:exon 55.0%
GTAGGAGTCGCCTGGTTTAC+AGG - Chr3:10393333-10393352 None:intergenic 55.0%
TACCCCTTCCTTGGAGAAGG+AGG + Chr3:10393108-10393127 MsG0380012063.01.T01:intron 55.0%
TCAGGCTCGCATCAACGGAT+AGG + Chr3:10394573-10394592 MsG0380012063.01.T01:CDS 55.0%
TCCCTCTTCCTCCTTCTCCA+AGG - Chr3:10393119-10393138 None:intergenic 55.0%
TTCACCGGCGGCAATATCTC+CGG + Chr3:10391774-10391793 MsG0380012063.01.T01:five_prime_UTR 55.0%
! CGGTCAGCTTTGCTGCTTAC+AGG - Chr3:10393630-10393649 None:intergenic 55.0%
ACTGAAGCTCCCGCATACGC+AGG + Chr3:10395115-10395134 MsG0380012063.01.T01:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - Chr3:10395111-10395130 None:intergenic 60.0%
CCGCCTTCCAGCAGAAGCAA+AGG + Chr3:10393647-10393666 MsG0380012063.01.T01:CDS 60.0%
CTGAAGCTCCCGCATACGCA+GGG + Chr3:10395116-10395135 MsG0380012063.01.T01:intron 60.0%
TAGGATCTACGGGGAGGGTG+TGG + Chr3:10393818-10393837 MsG0380012063.01.T01:CDS 60.0%
TCCAAACGCAAAGCGGTGGC+CGG - Chr3:10391796-10391815 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr3:10395143-10395162 None:intergenic 60.0%
ACGTGCGTCCGTGTCCGGTT+AGG + Chr3:10392141-10392160 MsG0380012063.01.T01:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + Chr3:10395128-10395147 MsG0380012063.01.T01:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr3:10395141-10395160 MsG0380012063.01.T01:intron 65.0%
CTTCCCGGACCCTGCGTATG+CGG - Chr3:10395128-10395147 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + Chr3:10395127-10395146 MsG0380012063.01.T01:intron 65.0%
GGTCAGGGGCCTCGTCTACT+AGG + Chr3:10393897-10393916 MsG0380012063.01.T01:CDS 65.0%
GTGGCCGGAGATATTGCCGC+CGG - Chr3:10391781-10391800 None:intergenic 65.0%
TCCGGCCACCGCTTTGCGTT+TGG + Chr3:10391792-10391811 MsG0380012063.01.T01:five_prime_UTR 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - Chr3:10395110-10395129 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG - Chr3:10395127-10395146 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG + Chr3:10395126-10395145 MsG0380012063.01.T01:intron 70.0%
CTCCCGCATACGCAGGGTCC+GGG + Chr3:10395122-10395141 MsG0380012063.01.T01:intron 70.0%
GCTCCCGCATACGCAGGGTC+CGG + Chr3:10395121-10395140 MsG0380012063.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 10391702 10397367 10391702 ID=MsG0380012063.01;Name=MsG0380012063.01
Chr3 mRNA 10391702 10397367 10391702 ID=MsG0380012063.01.T01;Parent=MsG0380012063.01;Name=MsG0380012063.01.T01;_AED=0.37;_eAED=0.37;_QI=212|1|0.87|1|0.85|0.75|8|0|468
Chr3 exon 10391702 10391840 10391702 ID=MsG0380012063.01.T01:exon:1688;Parent=MsG0380012063.01.T01
Chr3 exon 10393206 10393962 10393206 ID=MsG0380012063.01.T01:exon:1689;Parent=MsG0380012063.01.T01
Chr3 exon 10394230 10394351 10394230 ID=MsG0380012063.01.T01:exon:1690;Parent=MsG0380012063.01.T01
Chr3 exon 10394470 10394665 10394470 ID=MsG0380012063.01.T01:exon:1691;Parent=MsG0380012063.01.T01
Chr3 exon 10395713 10395830 10395713 ID=MsG0380012063.01.T01:exon:1692;Parent=MsG0380012063.01.T01
Chr3 exon 10395916 10395963 10395916 ID=MsG0380012063.01.T01:exon:1693;Parent=MsG0380012063.01.T01
Chr3 exon 10396217 10396317 10396217 ID=MsG0380012063.01.T01:exon:1694;Parent=MsG0380012063.01.T01
Chr3 exon 10397230 10397367 10397230 ID=MsG0380012063.01.T01:exon:1695;Parent=MsG0380012063.01.T01
Chr3 five_prime_UTR 10391702 10391840 10391702 ID=MsG0380012063.01.T01:five_prime_utr;Parent=MsG0380012063.01.T01
Chr3 five_prime_UTR 10393206 10393278 10393206 ID=MsG0380012063.01.T01:five_prime_utr;Parent=MsG0380012063.01.T01
Chr3 CDS 10393279 10393962 10393279 ID=MsG0380012063.01.T01:cds;Parent=MsG0380012063.01.T01
Chr3 CDS 10394230 10394351 10394230 ID=MsG0380012063.01.T01:cds;Parent=MsG0380012063.01.T01
Chr3 CDS 10394470 10394665 10394470 ID=MsG0380012063.01.T01:cds;Parent=MsG0380012063.01.T01
Chr3 CDS 10395713 10395830 10395713 ID=MsG0380012063.01.T01:cds;Parent=MsG0380012063.01.T01
Chr3 CDS 10395916 10395963 10395916 ID=MsG0380012063.01.T01:cds;Parent=MsG0380012063.01.T01
Chr3 CDS 10396217 10396317 10396217 ID=MsG0380012063.01.T01:cds;Parent=MsG0380012063.01.T01
Chr3 CDS 10397230 10397367 10397230 ID=MsG0380012063.01.T01:cds;Parent=MsG0380012063.01.T01
Gene Sequence

>MsG0380012063.01.T01

ATGGGTGCAGGAGAAGATCTTGTAAACAATGCAGCTAGTGTTGCTGAGAATCCTGTAAACCAGGCGACTCCTACTACAGAAAATCCTATAAGCAATCAAGCAGGTGGGGCAGAAAATCCTGTAAATGTTGCAAAAGACCAAGCAGTTGGTGCAGAAAACCCCGTAAATGACACTTTAGGTGGTTCAGATGTTTTAGTGAATGATAAAGCACGTGCTGCCGAAAATTCTACAAATGATACAGCAGGTGATGATGGAAAAGAAGGTGCTATGAAAGACAAAGCAGGTGAAGATGACAAACAAGGTGCTGCAGAAAATCTCGCAGAAGAGAAACCAGATGCCATTGAAACCCCTGTAAGCAGCAAAGCTGACCGCCTTCCAGCAGAAGCAAAGGAGATTCTGATATCATTAGCAGGTAAATGGGAGGATGTACTAGATGCAAATGTGTTACAGGTGATCCCTCTCAAGGGGGCAATGACAAATGAGGTATTTGAAATAAAGTGGCCAGCTACAACTGAGGAAACCTCACGAAAGGTTCTTGTTAGGATCTACGGGGAGGGTGTGGAAATTTTCTTTGATAGGGATGATGAAATACGGACATTTGAGTACATGTCAAAGAATGGTCAGGGGCCTCGTCTACTAGGACGTTTTACAAATGGACGTGTTGAAGAGTTTATACATGCACGGACGCTGTCAGCTTCTGATCTACGTGATCCATCCATTTCTGCTCTTATAGCTGCCAAAATGAAGGAGTTCCATGATCTAGATATGCCTGGTGAAAAGAAAGCCAATCTTTGGCCTACATTGAGAAATTGGCTTAGTGAGGCCAAACGTTTGTCTTCTCCAAAAGAAGTGGAAGCTTTTTATTTGGACACGGTCGACAAGGAAATCTCTATTTTGGAAAAGGAGCTGTCAGGCTCGCATCAACGGATAGGGTTTTGCCACAATGATTTGCAATATGGTAACATAATGCTTGACGAAGAGACCAACTCTGTGACCATAATAGACTATGAATATGCTAGTCACAATCCTGTAGCGTATGATATAGCAAACCACTTTTGTGAGATGGCTGCGAACTACCATACAGAAACGCCTCATATTCTTGATTATAGCAAATATCCTGACGTTGAGGAGCGTGAAAGATTTGTTAGGGCATATTTGAAGACCTCAGGTGAAGAACCAAGTGAGAGTGAAGTGGAGCACCTACTACAAGAAGTTGAGAAGTATACACTCGCAAATCATCTTTTCTGGGGCCTTTGGGGAATAATTTCGGGACAAGTAAACACAATTGAATTTGACTACAAGGAGTATGCGAAACAGAGGTTTCAAGAGTATTGGGCAAGGAAACCTTATCTTCTAAGCTCTGATGCACCTTCTCCTTTTAATAACCCTGAGGGTACAGGTATTTGA
Protein sequence

>MsG0380012063.01.T01

MGAGEDLVNNAASVAENPVNQATPTTENPISNQAGGAENPVNVAKDQAVGAENPVNDTLGGSDVLVNDKARAAENSTNDTAGDDGKEGAMKDKAGEDDKQGAAENLAEEKPDAIETPVSSKADRLPAEAKEILISLAGKWEDVLDANVLQVIPLKGAMTNEVFEIKWPATTEETSRKVLVRIYGEGVEIFFDRDDEIRTFEYMSKNGQGPRLLGRFTNGRVEEFIHARTLSASDLRDPSISALIAAKMKEFHDLDMPGEKKANLWPTLRNWLSEAKRLSSPKEVEAFYLDTVDKEISILEKELSGSHQRIGFCHNDLQYGNIMLDEETNSVTIIDYEYASHNPVAYDIANHFCEMAANYHTETPHILDYSKYPDVEERERFVRAYLKTSGEEPSESEVEHLLQEVEKYTLANHLFWGLWGIISGQVNTIEFDYKEYAKQRFQEYWARKPYLLSSDAPSPFNNPEGTGI*