Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012069.01.T01 | XP_003598424.2 | 95.894 | 341 | 13 | 1 | 1 | 341 | 1 | 340 | 0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012069.01.T01 | Q8L5A7 | 58.133 | 332 | 134 | 3 | 11 | 340 | 30 | 358 | 5.29E-145 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012069.01.T01 | G7IVU2 | 95.894 | 341 | 13 | 1 | 1 | 341 | 1 | 340 | 0.0 | 673 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280008239.01 | MsG0380012069.01 | 0.832749 | 7.913435e-56 | 8.927465e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012069.01.T01 | MTR_3g013500 | 95.894 | 341 | 13 | 1 | 1 | 341 | 1 | 340 | 0.0 | 673 |
| MsG0380012069.01.T01 | MTR_7g007710 | 63.746 | 331 | 113 | 4 | 15 | 340 | 6 | 334 | 2.65e-150 | 426 |
| MsG0380012069.01.T01 | MTR_8g040820 | 58.790 | 347 | 135 | 6 | 1 | 340 | 1 | 346 | 2.14e-141 | 404 |
| MsG0380012069.01.T01 | MTR_7g007680 | 58.309 | 343 | 130 | 6 | 1 | 339 | 1 | 334 | 1.25e-138 | 398 |
| MsG0380012069.01.T01 | MTR_8g040490 | 58.092 | 346 | 136 | 6 | 1 | 339 | 1 | 344 | 3.73e-137 | 395 |
| MsG0380012069.01.T01 | MTR_8g035720 | 61.146 | 314 | 115 | 4 | 32 | 339 | 95 | 407 | 2.82e-134 | 389 |
| MsG0380012069.01.T01 | MTR_8g040430 | 55.460 | 348 | 144 | 7 | 1 | 339 | 1 | 346 | 3.60e-129 | 373 |
| MsG0380012069.01.T01 | MTR_0071s0010 | 53.016 | 315 | 147 | 1 | 25 | 338 | 19 | 333 | 1.51e-123 | 358 |
| MsG0380012069.01.T01 | MTR_3g046670 | 53.016 | 315 | 147 | 1 | 25 | 338 | 19 | 333 | 1.51e-123 | 358 |
| MsG0380012069.01.T01 | MTR_8g041790 | 56.433 | 342 | 123 | 8 | 4 | 340 | 7 | 327 | 2.65e-123 | 357 |
| MsG0380012069.01.T01 | MTR_8g066220 | 53.822 | 314 | 145 | 0 | 25 | 338 | 20 | 333 | 4.20e-123 | 357 |
| MsG0380012069.01.T01 | MTR_8g040520 | 55.752 | 339 | 139 | 6 | 1 | 332 | 1 | 335 | 3.02e-122 | 355 |
| MsG0380012069.01.T01 | MTR_3g435130 | 51.746 | 315 | 151 | 1 | 25 | 338 | 20 | 334 | 1.91e-117 | 343 |
| MsG0380012069.01.T01 | MTR_8g066210 | 49.686 | 318 | 145 | 1 | 21 | 338 | 16 | 318 | 3.44e-114 | 334 |
| MsG0380012069.01.T01 | MTR_8g014380 | 53.165 | 316 | 106 | 6 | 4 | 317 | 7 | 282 | 3.65e-108 | 317 |
| MsG0380012069.01.T01 | MTR_8g040250 | 52.134 | 328 | 118 | 6 | 17 | 340 | 3 | 295 | 1.32e-107 | 317 |
| MsG0380012069.01.T01 | MTR_8g040820 | 63.182 | 220 | 77 | 3 | 125 | 340 | 28 | 247 | 9.32e-94 | 280 |
| MsG0380012069.01.T01 | MTR_8g040430 | 59.817 | 219 | 84 | 2 | 125 | 339 | 28 | 246 | 9.05e-89 | 267 |
| MsG0380012069.01.T01 | MTR_8g066280 | 54.787 | 188 | 85 | 0 | 151 | 338 | 22 | 209 | 1.30e-73 | 226 |
| MsG0380012069.01.T01 | MTR_3g434790 | 54.190 | 179 | 82 | 0 | 160 | 338 | 56 | 234 | 3.52e-65 | 206 |
| MsG0380012069.01.T01 | MTR_8g040730 | 54.857 | 175 | 74 | 3 | 14 | 186 | 330 | 501 | 8.14e-53 | 182 |
| MsG0380012069.01.T01 | MTR_8g040730 | 58.721 | 172 | 61 | 6 | 82 | 248 | 38 | 204 | 5.63e-52 | 180 |
| MsG0380012069.01.T01 | MTR_8g040710 | 55.705 | 149 | 64 | 1 | 182 | 328 | 134 | 282 | 2.39e-49 | 167 |
| MsG0380012069.01.T01 | MTR_8g040315 | 62.406 | 133 | 49 | 1 | 207 | 339 | 2 | 133 | 4.35e-41 | 140 |
| MsG0380012069.01.T01 | MTR_8g066190 | 39.450 | 109 | 48 | 1 | 230 | 338 | 2 | 92 | 3.74e-20 | 84.3 |
| MsG0380012069.01.T01 | MTR_8g040410 | 49.398 | 83 | 24 | 1 | 228 | 310 | 81 | 145 | 5.77e-17 | 77.0 |
| MsG0380012069.01.T01 | MTR_8g040410 | 55.385 | 65 | 25 | 2 | 71 | 132 | 21 | 84 | 2.19e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012069.01.T01 | AT5G07010 | 58.133 | 332 | 134 | 3 | 11 | 340 | 30 | 358 | 5.39e-146 | 416 |
| MsG0380012069.01.T01 | AT5G07000 | 55.014 | 349 | 145 | 5 | 1 | 340 | 1 | 346 | 1.90e-136 | 392 |
| MsG0380012069.01.T01 | AT3G45070 | 48.889 | 315 | 159 | 2 | 25 | 338 | 15 | 328 | 3.36e-103 | 306 |
| MsG0380012069.01.T01 | AT3G45070 | 48.889 | 315 | 159 | 2 | 25 | 338 | 10 | 323 | 4.86e-103 | 306 |
| MsG0380012069.01.T01 | AT3G45070 | 48.889 | 315 | 159 | 2 | 25 | 338 | 42 | 355 | 5.95e-103 | 307 |
| MsG0380012069.01.T01 | AT1G13420 | 49.196 | 311 | 151 | 4 | 30 | 338 | 26 | 331 | 5.10e-102 | 303 |
| MsG0380012069.01.T01 | AT2G03770 | 45.860 | 314 | 162 | 2 | 25 | 338 | 17 | 322 | 1.59e-99 | 297 |
| MsG0380012069.01.T01 | AT3G45080 | 48.428 | 318 | 157 | 4 | 25 | 338 | 15 | 329 | 4.44e-98 | 293 |
| MsG0380012069.01.T01 | AT5G43690 | 47.188 | 320 | 159 | 5 | 25 | 338 | 16 | 331 | 1.37e-97 | 292 |
| MsG0380012069.01.T01 | AT2G03760 | 48.889 | 315 | 154 | 3 | 25 | 338 | 16 | 324 | 1.67e-97 | 292 |
| MsG0380012069.01.T01 | AT2G03750 | 43.492 | 315 | 176 | 2 | 25 | 339 | 39 | 351 | 2.87e-93 | 282 |
| MsG0380012069.01.T01 | AT1G28170 | 46.646 | 328 | 170 | 5 | 14 | 338 | 1 | 326 | 5.05e-93 | 280 |
| MsG0380012069.01.T01 | AT2G14920 | 44.762 | 315 | 167 | 3 | 29 | 338 | 21 | 333 | 1.04e-92 | 280 |
| MsG0380012069.01.T01 | AT1G18590 | 44.409 | 313 | 159 | 6 | 30 | 334 | 34 | 339 | 6.42e-88 | 268 |
| MsG0380012069.01.T01 | AT1G74100 | 42.994 | 314 | 166 | 5 | 30 | 336 | 26 | 333 | 4.55e-84 | 258 |
| MsG0380012069.01.T01 | AT1G13430 | 43.161 | 329 | 166 | 4 | 29 | 338 | 25 | 351 | 5.89e-84 | 258 |
| MsG0380012069.01.T01 | AT1G74090 | 46.349 | 315 | 154 | 7 | 30 | 336 | 38 | 345 | 1.44e-81 | 252 |
| MsG0380012069.01.T01 | AT4G26280 | 42.395 | 309 | 158 | 2 | 25 | 331 | 12 | 302 | 2.91e-81 | 250 |
| MsG0380012069.01.T01 | AT2G27570 | 39.809 | 314 | 134 | 3 | 25 | 338 | 15 | 273 | 1.67e-71 | 223 |
Find 58 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGAGTATACGGTTTA+TGG | 0.109479 | 3:-10444279 | MsG0380012069.01.T01:CDS |
| CAGTTGGGTTTGGTCCATTT+TGG | 0.135254 | 3:-10444020 | MsG0380012069.01.T01:CDS |
| TTTATCTATTCCAAGGATTT+TGG | 0.160856 | 3:-10444506 | MsG0380012069.01.T01:CDS |
| TATATCCGTTGTGTGGATTT+TGG | 0.181066 | 3:+10444626 | None:intergenic |
| GGAATCACATGTTAGGTTAT+TGG | 0.187323 | 3:-10443999 | MsG0380012069.01.T01:CDS |
| CTTTAGCTTGGAAATGCTTT+TGG | 0.195572 | 3:+10444448 | None:intergenic |
| TTGATACTTTCATCTCTTCT+TGG | 0.198800 | 3:-10444122 | MsG0380012069.01.T01:CDS |
| AACCAAGTTGTGCCTGATTT+TGG | 0.224582 | 3:+10444399 | None:intergenic |
| TTTGCCTACTTTGAATTTAG+AGG | 0.247419 | 3:-10444070 | MsG0380012069.01.T01:CDS |
| ATAAATAAGACAGGAAAATT+TGG | 0.250076 | 3:-10443787 | MsG0380012069.01.T01:CDS |
| ATTGGAACCTTTGATTGAAT+TGG | 0.308929 | 3:+10444176 | None:intergenic |
| TGTTCCTTTCATTGAGTATA+CGG | 0.322453 | 3:-10444286 | MsG0380012069.01.T01:CDS |
| GCAAGATAGTTTATATTTGT+AGG | 0.322516 | 3:-10444152 | MsG0380012069.01.T01:CDS |
| CCTAACATGTGATTCCAAAA+TGG | 0.328144 | 3:+10444006 | None:intergenic |
| GTTCTCCAACCTTTCTCTCT+TGG | 0.341275 | 3:+10444537 | None:intergenic |
| TAATTATCTTTCACCTTCAA+TGG | 0.355015 | 3:-10443710 | MsG0380012069.01.T01:CDS |
| CTTTCTCTTCCAAGAGAGAA+AGG | 0.366868 | 3:-10444546 | MsG0380012069.01.T01:CDS |
| AATATAAACTATCTTGCAAT+TGG | 0.375291 | 3:+10444158 | None:intergenic |
| TGTAATGGTTCAGTTGGGTT+TGG | 0.379014 | 3:-10444030 | MsG0380012069.01.T01:CDS |
| AAGTTGACCTTGTTCTTCAA+TGG | 0.390902 | 3:+10444596 | None:intergenic |
| AAAAGGTGAAGTTGGTGATT+GGG | 0.392983 | 3:-10443734 | MsG0380012069.01.T01:CDS |
| GTTGCAACCGTACCAAAATC+AGG | 0.398172 | 3:-10444411 | MsG0380012069.01.T01:CDS |
| CCTTGGAATAGATAAATATA+AGG | 0.402362 | 3:+10444513 | None:intergenic |
| GAAAAGGTGAAGTTGGTGAT+TGG | 0.406526 | 3:-10443735 | MsG0380012069.01.T01:CDS |
| AATAAGTTCTTGTTTAGAAA+AGG | 0.408067 | 3:-10443751 | MsG0380012069.01.T01:CDS |
| CTCTTCCAAGAGAGAAAGGT+TGG | 0.415147 | 3:-10444542 | MsG0380012069.01.T01:CDS |
| TAATTTCTCTTCAATGACCT+TGG | 0.450982 | 3:+10443675 | None:intergenic |
| TGGCTTGGATTTCAGCTGGT+TGG | 0.452061 | 3:+10444481 | None:intergenic |
| GAAGAGATGAAAGTATCAAA+AGG | 0.453763 | 3:+10444126 | None:intergenic |
| AAGGTCATTGAAGAGAAATT+AGG | 0.457544 | 3:-10443673 | MsG0380012069.01.T01:CDS |
| AAACATCACTATCTTTAGCT+TGG | 0.461837 | 3:+10444436 | None:intergenic |
| TTGTTTAGAAAAGGTGAAGT+TGG | 0.464259 | 3:-10443742 | MsG0380012069.01.T01:CDS |
| CTGGTTGGCACCAAAATCCT+TGG | 0.468402 | 3:+10444496 | None:intergenic |
| TGTATTGTAATGGTTCAGTT+GGG | 0.480276 | 3:-10444035 | MsG0380012069.01.T01:CDS |
| TTTGGAAAGTGGTTATGGCT+TGG | 0.484935 | 3:+10444466 | None:intergenic |
| GAATTGGACAATGCATCAAA+AGG | 0.485852 | 3:+10444192 | None:intergenic |
| AAAGGTGAAGTTGGTGATTG+GGG | 0.501678 | 3:-10443733 | MsG0380012069.01.T01:CDS |
| GTTATGGCTTGGATTTCAGC+TGG | 0.507787 | 3:+10444477 | None:intergenic |
| ATGTATTGTAATGGTTCAGT+TGG | 0.509683 | 3:-10444036 | MsG0380012069.01.T01:CDS |
| TTGACGATTCATAATGGCAT+AGG | 0.513267 | 3:+10444365 | None:intergenic |
| AAATTCAAAGTAGGCAAAGA+AGG | 0.520540 | 3:+10444075 | None:intergenic |
| GCTTCCTCTAAATTCAAAGT+AGG | 0.521670 | 3:+10444066 | None:intergenic |
| TACCAAAATCAGGCACAACT+TGG | 0.522106 | 3:-10444401 | MsG0380012069.01.T01:CDS |
| CCTTATATTTATCTATTCCA+AGG | 0.527240 | 3:-10444513 | MsG0380012069.01.T01:CDS |
| AAGAGATGAAAGTATCAAAA+GGG | 0.539787 | 3:+10444127 | None:intergenic |
| GCATTGTCCAATTCAATCAA+AGG | 0.541996 | 3:-10444183 | MsG0380012069.01.T01:CDS |
| GGGTTGGAGATAAATAAGAC+AGG | 0.573639 | 3:-10443796 | MsG0380012069.01.T01:CDS |
| GATTGAAACTAAGCAAAGGA+TGG | 0.580104 | 3:+10444319 | None:intergenic |
| GTCATTGAAGAGAAATTAGG+TGG | 0.580624 | 3:-10443670 | MsG0380012069.01.T01:CDS |
| ACATTGGAGGAGGAAAATGA+AGG | 0.580962 | 3:-10443865 | MsG0380012069.01.T01:CDS |
| ATGAAAGGAACAAGATCATG+TGG | 0.595994 | 3:+10444297 | None:intergenic |
| ATAAGACAGGAAAATTTGGA+AGG | 0.610276 | 3:-10443783 | MsG0380012069.01.T01:CDS |
| ATTCATCTATATCCGTTGTG+TGG | 0.614136 | 3:+10444619 | None:intergenic |
| TAAACCGTATACTCAATGAA+AGG | 0.617239 | 3:+10444282 | None:intergenic |
| TGTGGATTGAAACTAAGCAA+AGG | 0.642813 | 3:+10444315 | None:intergenic |
| GATGAATCCATTGAAGAACA+AGG | 0.652919 | 3:-10444603 | MsG0380012069.01.T01:CDS |
| TTCAAAGTAGGCAAAGAAGG+TGG | 0.655893 | 3:+10444078 | None:intergenic |
| ATTTGCCAAAATCCACACAA+CGG | 0.691197 | 3:-10444631 | MsG0380012069.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTACTTGAAAAAAT+TGG | - | Chr3:10444376-10444395 | MsG0380012069.01.T01:CDS | 10.0% |
| !!! | TTCAAAAAAAGAACATTTTT+TGG | + | Chr3:10444332-10444351 | None:intergenic | 15.0% |
| !! | AATATAAACTATCTTGCAAT+TGG | + | Chr3:10444132-10444151 | None:intergenic | 20.0% |
| !! | ATAAATAAGACAGGAAAATT+TGG | - | Chr3:10444500-10444519 | MsG0380012069.01.T01:CDS | 20.0% |
| !!! | AATAAGTTCTTGTTTAGAAA+AGG | - | Chr3:10444536-10444555 | MsG0380012069.01.T01:CDS | 20.0% |
| ! | CCTTATATTTATCTATTCCA+AGG | - | Chr3:10443774-10443793 | MsG0380012069.01.T01:CDS | 25.0% |
| ! | CCTTGGAATAGATAAATATA+AGG | + | Chr3:10443777-10443796 | None:intergenic | 25.0% |
| ! | GCAAGATAGTTTATATTTGT+AGG | - | Chr3:10444135-10444154 | MsG0380012069.01.T01:CDS | 25.0% |
| ! | TAATTATCTTTCACCTTCAA+TGG | - | Chr3:10444577-10444596 | MsG0380012069.01.T01:CDS | 25.0% |
| !! | TCATGAATTTTAGACAAATC+AGG | + | Chr3:10444050-10444069 | None:intergenic | 25.0% |
| !! | TTTATCTATTCCAAGGATTT+TGG | - | Chr3:10443781-10443800 | MsG0380012069.01.T01:CDS | 25.0% |
| !!! | AAGAGATGAAAGTATCAAAA+GGG | + | Chr3:10444163-10444182 | None:intergenic | 25.0% |
| !!! | GAATTAGTTTCTTGTTTTCT+TGG | + | Chr3:10443722-10443741 | None:intergenic | 25.0% |
| !!! | GCTTTTGAAATGTATTGTAA+TGG | - | Chr3:10444242-10444261 | MsG0380012069.01.T01:CDS | 25.0% |
| !!! | GGTTTTTTGATGAAATGAAA+TGG | + | Chr3:10443950-10443969 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTGAGAAAATGAA+GGG | - | Chr3:10444470-10444489 | MsG0380012069.01.T01:CDS | 25.0% |
| !!! | TGTTCTTTTTTTGAAGTATG+AGG | - | Chr3:10444337-10444356 | MsG0380012069.01.T01:CDS | 25.0% |
| AAACATCACTATCTTTAGCT+TGG | + | Chr3:10443854-10443873 | None:intergenic | 30.0% | |
| AAATTCAAAGTAGGCAAAGA+AGG | + | Chr3:10444215-10444234 | None:intergenic | 30.0% | |
| AAGGTCATTGAAGAGAAATT+AGG | - | Chr3:10444614-10444633 | MsG0380012069.01.T01:CDS | 30.0% | |
| AATGGTTGAAAAATTGTCCA+AGG | - | Chr3:10444595-10444614 | MsG0380012069.01.T01:CDS | 30.0% | |
| ATAAGACAGGAAAATTTGGA+AGG | - | Chr3:10444504-10444523 | MsG0380012069.01.T01:CDS | 30.0% | |
| ATATGTGTACCAAAAAGTCT+AGG | + | Chr3:10444074-10444093 | None:intergenic | 30.0% | |
| ATGTATTGTAATGGTTCAGT+TGG | - | Chr3:10444251-10444270 | MsG0380012069.01.T01:CDS | 30.0% | |
| ATTGGAACCTTTGATTGAAT+TGG | + | Chr3:10444114-10444133 | None:intergenic | 30.0% | |
| TAAACCGTATACTCAATGAA+AGG | + | Chr3:10444008-10444027 | None:intergenic | 30.0% | |
| TAATTTCTCTTCAATGACCT+TGG | + | Chr3:10444615-10444634 | None:intergenic | 30.0% | |
| TGTATTGTAATGGTTCAGTT+GGG | - | Chr3:10444252-10444271 | MsG0380012069.01.T01:CDS | 30.0% | |
| TGTTCCTTTCATTGAGTATA+CGG | - | Chr3:10444001-10444020 | MsG0380012069.01.T01:CDS | 30.0% | |
| TTCATTGAGTATACGGTTTA+TGG | - | Chr3:10444008-10444027 | MsG0380012069.01.T01:CDS | 30.0% | |
| TTGATACTTTCATCTCTTCT+TGG | - | Chr3:10444165-10444184 | MsG0380012069.01.T01:CDS | 30.0% | |
| TTGTTTAGAAAAGGTGAAGT+TGG | - | Chr3:10444545-10444564 | MsG0380012069.01.T01:CDS | 30.0% | |
| TTTGCCTACTTTGAATTTAG+AGG | - | Chr3:10444217-10444236 | MsG0380012069.01.T01:CDS | 30.0% | |
| ! | GAAAAAATTGGCTGAGTTTT+TGG | - | Chr3:10444388-10444407 | MsG0380012069.01.T01:CDS | 30.0% |
| !! | GAAGAGATGAAAGTATCAAA+AGG | + | Chr3:10444164-10444183 | None:intergenic | 30.0% |
| !! | GACAATTTTTCAACCATTGA+AGG | + | Chr3:10444593-10444612 | None:intergenic | 30.0% |
| !!! | ATGGTTTTGACGATTCATAA+TGG | + | Chr3:10443931-10443950 | None:intergenic | 30.0% |
| !!! | GTAGTTTTGAGAAAATGAAG+GGG | - | Chr3:10444471-10444490 | MsG0380012069.01.T01:CDS | 30.0% |
| !!! | GTGTAGTTTTGAGAAAATGA+AGG | - | Chr3:10444469-10444488 | MsG0380012069.01.T01:CDS | 30.0% |
| AAGTTGACCTTGTTCTTCAA+TGG | + | Chr3:10443694-10443713 | None:intergenic | 35.0% | |
| ATGAAAGGAACAAGATCATG+TGG | + | Chr3:10443993-10444012 | None:intergenic | 35.0% | |
| ATTCATCTATATCCGTTGTG+TGG | + | Chr3:10443671-10443690 | None:intergenic | 35.0% | |
| ATTTGCCAAAATCCACACAA+CGG | - | Chr3:10443656-10443675 | MsG0380012069.01.T01:CDS | 35.0% | |
| CCTAACATGTGATTCCAAAA+TGG | + | Chr3:10444284-10444303 | None:intergenic | 35.0% | |
| GAATTGGACAATGCATCAAA+AGG | + | Chr3:10444098-10444117 | None:intergenic | 35.0% | |
| GATGAATCCATTGAAGAACA+AGG | - | Chr3:10443684-10443703 | MsG0380012069.01.T01:CDS | 35.0% | |
| GATTGAAACTAAGCAAAGGA+TGG | + | Chr3:10443971-10443990 | None:intergenic | 35.0% | |
| GCATTGTCCAATTCAATCAA+AGG | - | Chr3:10444104-10444123 | MsG0380012069.01.T01:CDS | 35.0% | |
| GCTTCCTCTAAATTCAAAGT+AGG | + | Chr3:10444224-10444243 | None:intergenic | 35.0% | |
| GGAATCACATGTTAGGTTAT+TGG | - | Chr3:10444288-10444307 | MsG0380012069.01.T01:CDS | 35.0% | |
| GTCATTGAAGAGAAATTAGG+TGG | - | Chr3:10444617-10444636 | MsG0380012069.01.T01:CDS | 35.0% | |
| TTGACGATTCATAATGGCAT+AGG | + | Chr3:10443925-10443944 | None:intergenic | 35.0% | |
| ! | AGAAGGTGGCTTAATTTTGT+TGG | + | Chr3:10444198-10444217 | None:intergenic | 35.0% |
| ! | ATTCATGAGCCTAGACTTTT+TGG | - | Chr3:10444062-10444081 | MsG0380012069.01.T01:CDS | 35.0% |
| ! | TATATCCGTTGTGTGGATTT+TGG | + | Chr3:10443664-10443683 | None:intergenic | 35.0% |
| ! | TGTGGATTGAAACTAAGCAA+AGG | + | Chr3:10443975-10443994 | None:intergenic | 35.0% |
| ! | TTTGGACTGTCCTTTTACAT+TGG | - | Chr3:10444406-10444425 | MsG0380012069.01.T01:CDS | 35.0% |
| ! | TTTTCCTCCTCCAATGTAAA+AGG | + | Chr3:10444419-10444438 | None:intergenic | 35.0% |
| !! | AAAAGGTGAAGTTGGTGATT+GGG | - | Chr3:10444553-10444572 | MsG0380012069.01.T01:CDS | 35.0% |
| !! | ATGCTTTTGGAAAGTGGTTA+TGG | + | Chr3:10443829-10443848 | None:intergenic | 35.0% |
| !! | TTGGAAATGCTTTTGGAAAG+TGG | + | Chr3:10443835-10443854 | None:intergenic | 35.0% |
| !! | TTTTGAGAAAATGAAGGGGT+TGG | - | Chr3:10444475-10444494 | MsG0380012069.01.T01:CDS | 35.0% |
| !!! | CCATTTTGGAATCACATGTT+AGG | - | Chr3:10444281-10444300 | MsG0380012069.01.T01:CDS | 35.0% |
| !!! | CTTTAGCTTGGAAATGCTTT+TGG | + | Chr3:10443842-10443861 | None:intergenic | 35.0% |
| ACATTGGAGGAGGAAAATGA+AGG | - | Chr3:10444422-10444441 | MsG0380012069.01.T01:CDS | 40.0% | |
| CTTTCTCTTCCAAGAGAGAA+AGG | - | Chr3:10443741-10443760 | MsG0380012069.01.T01:CDS | 40.0% | |
| GGGTTGGAGATAAATAAGAC+AGG | - | Chr3:10444491-10444510 | MsG0380012069.01.T01:CDS | 40.0% | |
| TACCAAAATCAGGCACAACT+TGG | - | Chr3:10443886-10443905 | MsG0380012069.01.T01:CDS | 40.0% | |
| TGTAATGGTTCAGTTGGGTT+TGG | - | Chr3:10444257-10444276 | MsG0380012069.01.T01:CDS | 40.0% | |
| TTCAAAGTAGGCAAAGAAGG+TGG | + | Chr3:10444212-10444231 | None:intergenic | 40.0% | |
| TTTGGAAAGTGGTTATGGCT+TGG | + | Chr3:10443824-10443843 | None:intergenic | 40.0% | |
| ! | AACCAAGTTGTGCCTGATTT+TGG | + | Chr3:10443891-10443910 | None:intergenic | 40.0% |
| !! | AAAGGTGAAGTTGGTGATTG+GGG | - | Chr3:10444554-10444573 | MsG0380012069.01.T01:CDS | 40.0% |
| !! | AGTTGTGCCTGATTTTGGTA+CGG | + | Chr3:10443886-10443905 | None:intergenic | 40.0% |
| !! | GAAAAGGTGAAGTTGGTGAT+TGG | - | Chr3:10444552-10444571 | MsG0380012069.01.T01:CDS | 40.0% |
| CTCTTCCAAGAGAGAAAGGT+TGG | - | Chr3:10443745-10443764 | MsG0380012069.01.T01:CDS | 45.0% | |
| GTTCTCCAACCTTTCTCTCT+TGG | + | Chr3:10443753-10443772 | None:intergenic | 45.0% | |
| GTTGCAACCGTACCAAAATC+AGG | - | Chr3:10443876-10443895 | MsG0380012069.01.T01:CDS | 45.0% | |
| ! | CTGTCCTTTTACATTGGAGG+AGG | - | Chr3:10444412-10444431 | MsG0380012069.01.T01:CDS | 45.0% |
| ! | GGACTGTCCTTTTACATTGG+AGG | - | Chr3:10444409-10444428 | MsG0380012069.01.T01:CDS | 45.0% |
| ! | GTTATGGCTTGGATTTCAGC+TGG | + | Chr3:10443813-10443832 | None:intergenic | 45.0% |
| !! | CAGTTGGGTTTGGTCCATTT+TGG | - | Chr3:10444267-10444286 | MsG0380012069.01.T01:CDS | 45.0% |
| CTGGTTGGCACCAAAATCCT+TGG | + | Chr3:10443794-10443813 | None:intergenic | 50.0% | |
| ! | TGGCTTGGATTTCAGCTGGT+TGG | + | Chr3:10443809-10443828 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 10443642 | 10444667 | 10443642 | ID=MsG0380012069.01;Name=MsG0380012069.01 |
| Chr3 | mRNA | 10443642 | 10444667 | 10443642 | ID=MsG0380012069.01.T01;Parent=MsG0380012069.01;Name=MsG0380012069.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|341 |
| Chr3 | exon | 10443642 | 10444667 | 10443642 | ID=MsG0380012069.01.T01:exon:21066;Parent=MsG0380012069.01.T01 |
| Chr3 | CDS | 10443642 | 10444667 | 10443642 | ID=MsG0380012069.01.T01:cds;Parent=MsG0380012069.01.T01 |
| Gene Sequence |
| Protein sequence |
