AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008239.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008239.01.T01 MTR_2g036910 87.896 347 25 3 1 347 1 330 0.0 589
MsG0280008239.01.T01 MTR_4g127630 56.677 337 112 9 12 344 6 312 6.58e-110 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008239.01.T01 AT2G19080 41.009 317 161 4 12 327 11 302 7.38e-72 226
MsG0280008239.01.T01 AT2G19080 51.667 180 86 1 12 190 11 190 5.23e-63 201

Find 85 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCAAGTTATCTCTATAAA+AGG 0.196299 2:-27658069 None:intergenic
TTAATGATTGAGTTGATTTC+AGG 0.208834 2:+27657921 MsG0280008239.01.T01:three_prime_UTR
GATGCTTTGTCAACTTTGTT+AGG 0.217954 2:+27653401 MsG0280008239.01.T01:CDS
CATCTTAACTACCCTGATTC+TGG 0.270092 2:+27651761 MsG0280008239.01.T01:CDS
CTGTGCTACCACAAAATATT+TGG 0.286639 2:-27657673 None:intergenic
GAATCACCAGCCTCAAAATA+AGG 0.291097 2:-27652637 None:intergenic
GATGCATCATCATCAACTTT+TGG 0.298371 2:+27655940 MsG0280008239.01.T01:CDS
TGCTTATAGCATCTATTATT+CGG 0.302530 2:+27652834 MsG0280008239.01.T01:CDS
ATTAGGGTATTACCAGAATC+AGG 0.342813 2:-27651773 None:intergenic
ACCTTGGTTGGTATCCATTC+AGG 0.343129 2:-27652745 None:intergenic
CAAAACAAGACCTTTCCTAT+TGG 0.367449 2:-27652868 None:intergenic
GTTCAAGAGAAAACCCAAAA+AGG 0.378097 2:+27657611 MsG0280008239.01.T01:CDS
CTCTCAACTTCCATTCCACT+TGG 0.391898 2:+27651733 MsG0280008239.01.T01:CDS
ATAGCAAAATTTGATATGAA+TGG 0.393571 2:-27657882 None:intergenic
ATGCTTTGTCAACTTTGTTA+GGG 0.395812 2:+27653402 MsG0280008239.01.T01:CDS
TCGGATCTTCCATGGCCAAT+AGG 0.406633 2:+27652853 MsG0280008239.01.T01:CDS
AAGATTACTTACTTGAAAAC+AGG 0.406766 2:+27653429 MsG0280008239.01.T01:CDS
TGCACTTGAGTACGAACTTT+GGG 0.422835 2:+27652792 MsG0280008239.01.T01:CDS
TCCGCAAAATTGATGATTCC+TGG 0.425455 2:-27655810 None:intergenic
GTTGTAAGGAAACCATGTTT+TGG 0.439215 2:+27651659 MsG0280008239.01.T01:CDS
TTGGCCACTTGGGTTAATAT+CGG 0.439923 2:+27653714 MsG0280008239.01.T01:CDS
CAATAGGAAAGGTCTTGTTT+TGG 0.444101 2:+27652869 MsG0280008239.01.T01:CDS
GATGATGGCGATCTAGACTT+TGG 0.460675 2:+27657762 MsG0280008239.01.T01:CDS
CCGTCTAATGTTCCATATGT+TGG 0.461353 2:+27655913 MsG0280008239.01.T01:CDS
GGAACAACACCCTTGTTGTA+AGG 0.462933 2:+27651645 MsG0280008239.01.T01:CDS
TAAAGAGCCAACAGATTCAT+AGG 0.464294 2:-27658003 None:intergenic
GAAATATGTGCAACAACGTA+AGG 0.464318 2:+27655861 MsG0280008239.01.T01:CDS
CCAAGGTGCTGCTCACAACT+TGG 0.465460 2:+27652761 MsG0280008239.01.T01:CDS
GATGCATCAGCACCAACATA+TGG 0.470293 2:-27655925 None:intergenic
GTGTATCTTCACTCCCTGAA+TGG 0.472764 2:+27652731 MsG0280008239.01.T01:CDS
AGACAAACATTGAGGACAAC+CGG 0.484299 2:-27651690 None:intergenic
ATGCACTTGAGTACGAACTT+TGG 0.490848 2:+27652791 MsG0280008239.01.T01:CDS
AGCAAGTTATCTCTATAAAA+GGG 0.492838 2:-27658068 None:intergenic
GGATCATTGAGTGCTTGAAA+AGG 0.493019 2:+27652686 MsG0280008239.01.T01:CDS
CCTTGGTTGGTATCCATTCA+GGG 0.493907 2:-27652744 None:intergenic
ATCATGAAAATTTAGATACA+AGG 0.495810 2:+27657852 MsG0280008239.01.T01:three_prime_UTR
GACGTAGGTGATTTAGATAC+TGG 0.496105 2:+27652709 MsG0280008239.01.T01:CDS
ACTAATGGCAGTTGGCCACT+TGG 0.498549 2:+27653703 MsG0280008239.01.T01:intron
AACATTGAGGACAACCGGTT+GGG 0.500720 2:-27651685 None:intergenic
GATCTAGACTTTGGTTATGA+TGG 0.519244 2:+27657771 MsG0280008239.01.T01:CDS
CTAATGGCAGTTGGCCACTT+GGG 0.520486 2:+27653704 MsG0280008239.01.T01:intron
ACATATAATAATGAGAAGGA+AGG 0.520730 2:+27652664 MsG0280008239.01.T01:CDS
AAGCAAAAGCAATACAGAGA+TGG 0.521572 2:-27658114 None:intergenic
ACAGATTCATAGGTCCTCTC+AGG 0.521757 2:-27657993 None:intergenic
TCTATTATTCGGATCTTCCA+TGG 0.525813 2:+27652845 MsG0280008239.01.T01:CDS
AGCAAAAGCAATACAGAGAT+GGG 0.527760 2:-27658113 None:intergenic
TAGATGCTATAAGCAGATGA+AGG 0.528284 2:-27652826 None:intergenic
AAGACCTTTCCTATTGGCCA+TGG 0.535278 2:-27652862 None:intergenic
GATCATTGAGTGCTTGAAAA+GGG 0.535433 2:+27652687 MsG0280008239.01.T01:CDS
TCCTGGTGGTACATAAATGC+AGG 0.538821 2:-27655793 None:intergenic
AGATGATAATCCAAGTGGAA+TGG 0.543476 2:-27651743 None:intergenic
AAGGGTGTTGTTCCTTTGTG+TGG 0.548281 2:-27651636 None:intergenic
TGCTGACGTAAAAGAAGAAG+AGG 0.552337 2:+27652939 MsG0280008239.01.T01:CDS
GGAGAACTTATAGAAGCTGC+TGG 0.554932 2:+27655883 MsG0280008239.01.T01:CDS
TCCTGCATTTATGTACCACC+AGG 0.570859 2:+27655792 MsG0280008239.01.T01:CDS
GGTGAAGTCGAGTTAGATGA+TGG 0.579460 2:+27657747 MsG0280008239.01.T01:CDS
CCAACATATGGAACATTAGA+CGG 0.580466 2:-27655913 None:intergenic
CCAAGTTGTGAGCAGCACCT+TGG 0.582574 2:-27652761 None:intergenic
ACTTGAGTACGAACTTTGGG+TGG 0.584184 2:+27652795 MsG0280008239.01.T01:CDS
AAACATTGAGGACAACCGGT+TGG 0.589606 2:-27651686 None:intergenic
AGATGCTATAAGCAGATGAA+GGG 0.591950 2:-27652825 None:intergenic
TCTTCCATGGCCAATAGGAA+AGG 0.597277 2:+27652858 MsG0280008239.01.T01:CDS
GTTGTGAGCAGCACCTTGGT+TGG 0.598155 2:-27652757 None:intergenic
CATATAATAATGAGAAGGAA+GGG 0.601669 2:+27652665 MsG0280008239.01.T01:CDS
GAGAGGACCTATGAATCTGT+TGG 0.603661 2:+27657996 MsG0280008239.01.T01:three_prime_UTR
TGCTTTGTCAACTTTGTTAG+GGG 0.610978 2:+27653403 MsG0280008239.01.T01:CDS
TGTGACATATAATAATGAGA+AGG 0.613042 2:+27652660 MsG0280008239.01.T01:CDS
AAAGGAGCAGCAAACAAAGG+AGG 0.619250 2:+27657629 MsG0280008239.01.T01:CDS
ATGGATGAAAATGCAAGCCT+AGG 0.623967 2:+27657790 MsG0280008239.01.T01:exon
TTAGGGTATTACCAGAATCA+GGG 0.625443 2:-27651772 None:intergenic
AACATGGTTTCCTTACAACA+AGG 0.629046 2:-27651655 None:intergenic
ATGTAAGCAGACAAACATTG+AGG 0.630529 2:-27651698 None:intergenic
AAATATGTGCAACAACGTAA+GGG 0.630877 2:+27655862 MsG0280008239.01.T01:CDS
AAAGCATGTCAAACTACTTG+AGG 0.631835 2:-27657966 None:intergenic
CTTGAGTACGAACTTTGGGT+GGG 0.632220 2:+27652796 MsG0280008239.01.T01:CDS
ACATGGTTTCCTTACAACAA+GGG 0.641206 2:-27651654 None:intergenic
ATCACCGATATTAACCCAAG+TGG 0.647978 2:-27653718 None:intergenic
CCGGTTGGGAGACCAAAACA+TGG 0.658170 2:-27651671 None:intergenic
AGTTAAGATGATAATCCAAG+TGG 0.661052 2:-27651748 None:intergenic
ATGTCTGGAATCAGTGATGA+CGG 0.672122 2:+27657726 MsG0280008239.01.T01:CDS
GAGTGCTTGAAAAGGGACGT+AGG 0.691799 2:+27652694 MsG0280008239.01.T01:CDS
CAAAGAATCTGTGTGTTGTG+TGG 0.692657 2:+27653755 MsG0280008239.01.T01:CDS
CCCTGAATGGATACCAACCA+AGG 0.694097 2:+27652744 MsG0280008239.01.T01:CDS
GCAAAATTGATGATTCCTGG+TGG 0.726783 2:-27655807 None:intergenic
AATCGAATGATACCACACAA+AGG 0.730233 2:+27651624 MsG0280008239.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATAATTATTTTTAAATA+AGG - Chr2:27656485-27656504 None:intergenic 0.0%
!! AAAACACTAAAAAATTAAAA+GGG - Chr2:27651870-27651889 None:intergenic 10.0%
!! ATTGTTTCATTATTATATAA+AGG - Chr2:27656986-27657005 None:intergenic 10.0%
!! TAAAACACTAAAAAATTAAA+AGG - Chr2:27651871-27651890 None:intergenic 10.0%
!!! GAAAAATATTTTACAAATTA+AGG - Chr2:27657578-27657597 None:intergenic 10.0%
!!! TCTTAAGTATTTTTTTTTTA+AGG + Chr2:27657473-27657492 MsG0280008239.01.T01:intron 10.0%
!!! TTGTAAAATATTTTTCTATA+AGG + Chr2:27657582-27657601 MsG0280008239.01.T01:intron 10.0%
!! AAATTATAGTAAAATATGTG+AGG + Chr2:27656922-27656941 MsG0280008239.01.T01:intron 15.0%
!! ATAATAGTAACTAAGATATT+AGG - Chr2:27656288-27656307 None:intergenic 15.0%
!! ATATAAAAGAGATAAAGATT+AGG - Chr2:27651793-27651812 None:intergenic 15.0%
!! ATATTACTATAAAGAAATGT+TGG + Chr2:27656754-27656773 MsG0280008239.01.T01:intron 15.0%
!! CAAATTACAAATGAATTATA+AGG + Chr2:27655325-27655344 MsG0280008239.01.T01:intron 15.0%
!! CTGATTTATAATAAACTAAT+GGG - Chr2:27653459-27653478 None:intergenic 15.0%
!! TAAGAAATATAAAGTTAGAA+AGG + Chr2:27656507-27656526 MsG0280008239.01.T01:intron 15.0%
!! TATAAAAGAGATAAAGATTA+GGG - Chr2:27651792-27651811 None:intergenic 15.0%
!! TGTAAAGTTAATAAACTAAA+GGG - Chr2:27653017-27653036 None:intergenic 15.0%
!!! ACTGATTTATAATAAACTAA+TGG - Chr2:27653460-27653479 None:intergenic 15.0%
!!! ATATCAAATTTTGCTATAAT+AGG + Chr2:27657888-27657907 MsG0280008239.01.T01:three_prime_UTR 15.0%
!!! ATCTTTAGATTTATTTTTAC+TGG + Chr2:27656650-27656669 MsG0280008239.01.T01:intron 15.0%
!!! ATTTTATGTTAGAAACATTT+TGG + Chr2:27653482-27653501 MsG0280008239.01.T01:intron 15.0%
!!! ATTTTTACACTCAAATTTAT+TGG - Chr2:27652182-27652201 None:intergenic 15.0%
!!! TATTTATTTGAGTTGATTTT+AGG + Chr2:27652014-27652033 MsG0280008239.01.T01:intron 15.0%
!!! TCAAATTAATTTTCTATCTT+TGG - Chr2:27654232-27654251 None:intergenic 15.0%
!!! TTTTGAATAATATCTTTTGA+AGG + Chr2:27656538-27656557 MsG0280008239.01.T01:intron 15.0%
!! AACACAATCAAATGATTAAA+AGG - Chr2:27651909-27651928 None:intergenic 20.0%
!! AAGAACAAAATTTCATCAAA+TGG - Chr2:27651962-27651981 None:intergenic 20.0%
!! AGAACAAAATTTCATCAAAT+GGG - Chr2:27651961-27651980 None:intergenic 20.0%
!! ATAGCAAAATTTGATATGAA+TGG - Chr2:27657885-27657904 None:intergenic 20.0%
!! ATATAGGCATAATTAGTAAA+AGG - Chr2:27654343-27654362 None:intergenic 20.0%
!! ATCATGAAAATTTAGATACA+AGG + Chr2:27657852-27657871 MsG0280008239.01.T01:three_prime_UTR 20.0%
!! ATTAGCATGTTTCAAAAAAT+TGG - Chr2:27655836-27655855 None:intergenic 20.0%
!! CAAAGAAAAAATAATGTCTA+AGG - Chr2:27654079-27654098 None:intergenic 20.0%
!! CAACTCAATCATTAAAAAAA+TGG - Chr2:27657916-27657935 None:intergenic 20.0%
!! GTGTAAAGTTAATAAACTAA+AGG - Chr2:27653018-27653037 None:intergenic 20.0%
!! TATCTTACCTTAATTGATAT+TGG + Chr2:27655270-27655289 MsG0280008239.01.T01:intron 20.0%
!! TCAAAATTACTAAAGAGATA+AGG - Chr2:27655583-27655602 None:intergenic 20.0%
!! TTACTAATTATGCCTATATA+CGG + Chr2:27654344-27654363 MsG0280008239.01.T01:intron 20.0%
!!! AAGGAATTTTAAATGATCTA+TGG - Chr2:27654493-27654512 None:intergenic 20.0%
!!! AATTTTAAATGATCTATGGT+GGG - Chr2:27654489-27654508 None:intergenic 20.0%
!!! ATATCTAGATCATTTGATTT+CGG - Chr2:27652457-27652476 None:intergenic 20.0%
!!! CAAGATTTCTAAAAATAACT+TGG - Chr2:27657177-27657196 None:intergenic 20.0%
!!! CTTTTAAGTAGAATCAATTA+TGG + Chr2:27652233-27652252 MsG0280008239.01.T01:intron 20.0%
!!! GATTTAGAATGAATTTGTTT+TGG + Chr2:27652073-27652092 MsG0280008239.01.T01:intron 20.0%
!!! GGATTTTTATGAATCTTTAT+TGG - Chr2:27656189-27656208 None:intergenic 20.0%
!!! GTCAACTTAGATTATTTTTT+AGG + Chr2:27656254-27656273 MsG0280008239.01.T01:intron 20.0%
!!! GTTTATTCATTTTACTCATA+CGG + Chr2:27655731-27655750 MsG0280008239.01.T01:intron 20.0%
!!! TCTTGTTTTCTTATTTGATT+AGG + Chr2:27656309-27656328 MsG0280008239.01.T01:intron 20.0%
!!! TTAATTTGAACAAATTACCT+TGG + Chr2:27654243-27654262 MsG0280008239.01.T01:intron 20.0%
!!! TTGTAATTTCGTTTTTTGTT+TGG + Chr2:27652586-27652605 MsG0280008239.01.T01:intron 20.0%
!!! TTTCTTATTTGATTAGGATT+TGG + Chr2:27656315-27656334 MsG0280008239.01.T01:intron 20.0%
!!! TTTTATGAATCTTTATTGGT+TGG - Chr2:27656185-27656204 None:intergenic 20.0%
!!! TTTTTTGAAACATGCTAATT+TGG + Chr2:27655837-27655856 MsG0280008239.01.T01:CDS 20.0%
! AAATAGATTGAAACCTACAA+AGG - Chr2:27654774-27654793 None:intergenic 25.0%
! AAGATTACTTACTTGAAAAC+AGG + Chr2:27653429-27653448 MsG0280008239.01.T01:CDS 25.0%
! ACATATAATAATGAGAAGGA+AGG + Chr2:27652664-27652683 MsG0280008239.01.T01:CDS 25.0%
! ACCAAAATGTAAGAAGTTAA+AGG - Chr2:27653251-27653270 None:intergenic 25.0%
! AGCAAGTTATCTCTATAAAA+GGG - Chr2:27658071-27658090 None:intergenic 25.0%
! ATAAAATGAAATCCATAAGC+AGG - Chr2:27656011-27656030 None:intergenic 25.0%
! ATATGGTCAATTGTAATCAA+TGG - Chr2:27654560-27654579 None:intergenic 25.0%
! ATTACCTTGGATTAAATGAA+TGG + Chr2:27654256-27654275 MsG0280008239.01.T01:intron 25.0%
! CATATAATAATGAGAAGGAA+GGG + Chr2:27652665-27652684 MsG0280008239.01.T01:CDS 25.0%
! CATTGAACCAATATCAATTA+AGG - Chr2:27655280-27655299 None:intergenic 25.0%
! CTTAACTATAGTTTACACTT+CGG + Chr2:27655009-27655028 MsG0280008239.01.T01:intron 25.0%
! CTTATAGACAAGATGATATT+AGG - Chr2:27654533-27654552 None:intergenic 25.0%
! GAAATATGCTTTGCAAAATA+TGG - Chr2:27654577-27654596 None:intergenic 25.0%
! GATCACATATATAATATGCT+TGG - Chr2:27654437-27654456 None:intergenic 25.0%
! GCTATTTAACAACAACTTTA+AGG - Chr2:27657282-27657301 None:intergenic 25.0%
! TAAAATGAAATCCATAAGCA+GGG - Chr2:27656010-27656029 None:intergenic 25.0%
! TACAAAATACTGTCAAGTAA+CGG + Chr2:27657368-27657387 MsG0280008239.01.T01:intron 25.0%
! TAGCAAGTTATCTCTATAAA+AGG - Chr2:27658072-27658091 None:intergenic 25.0%
! TATATTAAGTAAGTTGCTCT+TGG + Chr2:27657084-27657103 MsG0280008239.01.T01:intron 25.0%
! TGCTTATAGCATCTATTATT+CGG + Chr2:27652834-27652853 MsG0280008239.01.T01:CDS 25.0%
! TGTGACATATAATAATGAGA+AGG + Chr2:27652660-27652679 MsG0280008239.01.T01:CDS 25.0%
! TTAAGTAGAATCAATTATGG+AGG + Chr2:27652236-27652255 MsG0280008239.01.T01:intron 25.0%
!! GAATTTTAAATGATCTATGG+TGG - Chr2:27654490-27654509 None:intergenic 25.0%
!! TATTGGTTGGTTCAATAATT+TGG - Chr2:27656172-27656191 None:intergenic 25.0%
!! TGACCTAACAGAATATTTTA+TGG + Chr2:27652492-27652511 MsG0280008239.01.T01:intron 25.0%
!! TTCATTTGGTTTATGAAATG+CGG - Chr2:27654388-27654407 None:intergenic 25.0%
!! TTCGTAAAATTTGTTCATGT+TGG + Chr2:27652364-27652383 MsG0280008239.01.T01:intron 25.0%
!! TTGAAGTGTCAACAAAAAAT+AGG - Chr2:27657524-27657543 None:intergenic 25.0%
!! TTTGTTCATGTTTTCTACTA+TGG - Chr2:27655447-27655466 None:intergenic 25.0%
!! TTTTCATGATACAACAGAAA+AGG - Chr2:27657842-27657861 None:intergenic 25.0%
!! TTTTGTTCTTTCTTACGTTT+TGG + Chr2:27651972-27651991 MsG0280008239.01.T01:intron 25.0%
!!! AAATTGAGTTGAAGTGTAAA+GGG + Chr2:27652113-27652132 MsG0280008239.01.T01:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - Chr2:27652287-27652306 None:intergenic 25.0%
!!! AGATCAAATTCCTTATTTTG+AGG + Chr2:27652627-27652646 MsG0280008239.01.T01:intron 25.0%
!!! ATTAGTAAGTTTTAGCTTGA+AGG + Chr2:27656583-27656602 MsG0280008239.01.T01:intron 25.0%
!!! TAACTCAATTTTGATACCTT+GGG - Chr2:27655139-27655158 None:intergenic 25.0%
!!! TAATTTCGTTTTTTGTTTGG+TGG + Chr2:27652589-27652608 MsG0280008239.01.T01:intron 25.0%
!!! TACACCTCTAGAATTAATTT+TGG + Chr2:27652306-27652325 MsG0280008239.01.T01:intron 25.0%
!!! TCCTTTAACTTCTTACATTT+TGG + Chr2:27653247-27653266 MsG0280008239.01.T01:intron 25.0%
!!! TTAACTCAATTTTGATACCT+TGG - Chr2:27655140-27655159 None:intergenic 25.0%
!!! TTAATGATTGAGTTGATTTC+AGG + Chr2:27657921-27657940 MsG0280008239.01.T01:three_prime_UTR 25.0%
!!! TTGTTTTGGAAAATTGATTC+CGG + Chr2:27652087-27652106 MsG0280008239.01.T01:intron 25.0%
!!! TTTCAGTTATTTCTGTGTAT+AGG - Chr2:27654181-27654200 None:intergenic 25.0%
!!! TTTTGATTTCAATGCTTCAT+TGG + Chr2:27653201-27653220 MsG0280008239.01.T01:intron 25.0%
AAACTGTTACGTTGTAAATC+CGG + Chr2:27655168-27655187 MsG0280008239.01.T01:intron 30.0%
AAAGTTACCAACTTTAACGA+GGG + Chr2:27655540-27655559 MsG0280008239.01.T01:intron 30.0%
AAATATGTGCAACAACGTAA+GGG + Chr2:27655862-27655881 MsG0280008239.01.T01:CDS 30.0%
AAATCCCTCAAATATTGAAG+AGG + Chr2:27656091-27656110 MsG0280008239.01.T01:intron 30.0%
AATGACTCACTATGTGATAT+TGG - Chr2:27654690-27654709 None:intergenic 30.0%
AATGGAGTTTCAGATAAAGA+CGG - Chr2:27656861-27656880 None:intergenic 30.0%
AATGTCTAAGGAGATATTAG+TGG - Chr2:27654067-27654086 None:intergenic 30.0%
ACAAGAAAGAATATGTGAAG+AGG - Chr2:27654801-27654820 None:intergenic 30.0%
ACATAAACAGAACATAAGCA+TGG - Chr2:27653557-27653576 None:intergenic 30.0%
AGATTACATTCTTACTCTCA+CGG - Chr2:27654459-27654478 None:intergenic 30.0%
AGTGTAAAGGGATTTATGTT+TGG + Chr2:27652125-27652144 MsG0280008239.01.T01:intron 30.0%
AGTTAAGATGATAATCCAAG+TGG - Chr2:27651751-27651770 None:intergenic 30.0%
ATAAGTGTAACATAACTCAC+AGG - Chr2:27653640-27653659 None:intergenic 30.0%
ATATAATGTGACTTCCAACT+TGG + Chr2:27653972-27653991 MsG0280008239.01.T01:intron 30.0%
ATCAAAAATAAGTTCAGCCT+AGG - Chr2:27657810-27657829 None:intergenic 30.0%
ATGCTTTGTCAACTTTGTTA+GGG + Chr2:27653402-27653421 MsG0280008239.01.T01:CDS 30.0%
CAAGAAAGAATATGTGAAGA+GGG - Chr2:27654800-27654819 None:intergenic 30.0%
CAGAATGTAAGATCTTGAAA+TGG - Chr2:27657551-27657570 None:intergenic 30.0%
CATGACAGTACTAAGAAATA+TGG - Chr2:27656698-27656717 None:intergenic 30.0%
CCCAAAAAATCAATTGGATT+GGG - Chr2:27656413-27656432 None:intergenic 30.0%
CGAAGTGTAAACTATAGTTA+AGG - Chr2:27655011-27655030 None:intergenic 30.0%
CGTCCATAAAATATTCTGTT+AGG - Chr2:27652498-27652517 None:intergenic 30.0%
GTAAGATACTCGTTATATTG+TGG - Chr2:27655258-27655277 None:intergenic 30.0%
TATTATTAAACACCAACCCT+TGG - Chr2:27656355-27656374 None:intergenic 30.0%
TATTGCAAACTTGCAACAAT+GGG - Chr2:27655474-27655493 None:intergenic 30.0%
TCTTAGCCCAAAAAATCAAT+TGG - Chr2:27656419-27656438 None:intergenic 30.0%
TCTTCAATATTTGAGGGATT+TGG - Chr2:27656092-27656111 None:intergenic 30.0%
TGCTTATGTTCTGTTTATGT+AGG + Chr2:27653557-27653576 MsG0280008239.01.T01:intron 30.0%
TGGTTTCTCTATAGTAGAAT+TGG - Chr2:27652267-27652286 None:intergenic 30.0%
TTATGGACGAAAAGCAAAAA+GGG + Chr2:27652509-27652528 MsG0280008239.01.T01:intron 30.0%
TTGCAAAATATGTTCATCAG+CGG + Chr2:27653871-27653890 MsG0280008239.01.T01:intron 30.0%
TTTATGGACGAAAAGCAAAA+AGG + Chr2:27652508-27652527 MsG0280008239.01.T01:intron 30.0%
! AAAAATCAATTGGATTGGGT+TGG - Chr2:27656409-27656428 None:intergenic 30.0%
! AAGAAGAGCCAAATATTTTG+TGG + Chr2:27657665-27657684 MsG0280008239.01.T01:CDS 30.0%
! AATCGTTTCTCCATCAATTT+TGG - Chr2:27656119-27656138 None:intergenic 30.0%
! ATTAGAGCAAAGTTTGACTT+CGG + Chr2:27653518-27653537 MsG0280008239.01.T01:intron 30.0%
! ATTCATTTTACTCATACGGT+TGG + Chr2:27655735-27655754 MsG0280008239.01.T01:intron 30.0%
! CAAAAAGGGGTATATTTGTT+GGG + Chr2:27652523-27652542 MsG0280008239.01.T01:intron 30.0%
! GAGTTTTCTGTTAAAGAGTA+AGG - Chr2:27654969-27654988 None:intergenic 30.0%
! GTTGGTTCAATAATTTGGAA+CGG - Chr2:27656167-27656186 None:intergenic 30.0%
! TCATTTGGTTTATGAAATGC+GGG - Chr2:27654387-27654406 None:intergenic 30.0%
! TGAATATATGGTCTCACTTT+TGG - Chr2:27652337-27652356 None:intergenic 30.0%
! TTCAATAATTTGGAACGGAT+GGG - Chr2:27656162-27656181 None:intergenic 30.0%
! TTTGATAACACTTAGGACTA+TGG + Chr2:27652983-27653002 MsG0280008239.01.T01:intron 30.0%
!! CGGTTGGAATTATTATTTTG+AGG + Chr2:27655751-27655770 MsG0280008239.01.T01:intron 30.0%
!! GAAATTGAGTTGAAGTGTAA+AGG + Chr2:27652112-27652131 MsG0280008239.01.T01:intron 30.0%
!! GGGTTGGTGTTTAATAATAT+TGG + Chr2:27656356-27656375 MsG0280008239.01.T01:intron 30.0%
!!! ACCCAATCCAATTGATTTTT+TGG + Chr2:27656409-27656428 MsG0280008239.01.T01:intron 30.0%
!!! CCCAATCCAATTGATTTTTT+GGG + Chr2:27656410-27656429 MsG0280008239.01.T01:intron 30.0%
!!! TATTCTTTCTTGTCGACTTT+TGG + Chr2:27654808-27654827 MsG0280008239.01.T01:intron 30.0%
!!! TATTTTAGTCATTGCGTAGT+CGG + Chr2:27652417-27652436 MsG0280008239.01.T01:intron 30.0%
!!! TTGAGGAACTGTTTTAACTT+GGG + Chr2:27655768-27655787 MsG0280008239.01.T01:intron 30.0%
!!! TTTGAGGAACTGTTTTAACT+TGG + Chr2:27655767-27655786 MsG0280008239.01.T01:intron 30.0%
AAAATTGCATCCAAGCTTGA+TGG - Chr2:27653583-27653602 None:intergenic 35.0%
AAACTGCAACAACAATTCTC+AGG + Chr2:27656819-27656838 MsG0280008239.01.T01:intron 35.0%
AAAGCATGTCAAACTACTTG+AGG - Chr2:27657969-27657988 None:intergenic 35.0%
AAATCGATAGTTTCTGCGAA+CGG + Chr2:27657433-27657452 MsG0280008239.01.T01:intron 35.0%
AACAGTTAACACCAATGTGT+CGG - Chr2:27657054-27657073 None:intergenic 35.0%
AACATGGTTTCCTTACAACA+AGG - Chr2:27651658-27651677 None:intergenic 35.0%
AACTGTTACGTTGTAAATCC+GGG + Chr2:27655169-27655188 MsG0280008239.01.T01:intron 35.0%
AAGCAAAAGCAATACAGAGA+TGG - Chr2:27658117-27658136 None:intergenic 35.0%
AATCGAATGATACCACACAA+AGG + Chr2:27651624-27651643 MsG0280008239.01.T01:CDS 35.0%
AATGTATCATCAGACATCAG+TGG + Chr2:27654725-27654744 MsG0280008239.01.T01:intron 35.0%
ACAAAACAAACCTTCTGCAA+AGG + Chr2:27655368-27655387 MsG0280008239.01.T01:intron 35.0%
ACATGGTTTCCTTACAACAA+GGG - Chr2:27651657-27651676 None:intergenic 35.0%
ACGAAGACCAAGTGAATATA+TGG - Chr2:27652349-27652368 None:intergenic 35.0%
AGAGATAAGGATGATGAGAT+TGG - Chr2:27655570-27655589 None:intergenic 35.0%
AGATGATAATCCAAGTGGAA+TGG - Chr2:27651746-27651765 None:intergenic 35.0%
AGATGCTATAAGCAGATGAA+GGG - Chr2:27652828-27652847 None:intergenic 35.0%
AGCAAAAGCAATACAGAGAT+GGG - Chr2:27658116-27658135 None:intergenic 35.0%
AGTGAGACCATATATTCACT+TGG + Chr2:27652339-27652358 MsG0280008239.01.T01:intron 35.0%
ATACCTACTAAGCACATTCA+AGG - Chr2:27655063-27655082 None:intergenic 35.0%
ATCATAGTGAAGAGTAGCTT+AGG - Chr2:27654157-27654176 None:intergenic 35.0%
ATGAGATACGCAAACTTAGA+CGG - Chr2:27654314-27654333 None:intergenic 35.0%
ATGGAGTTTCAGATAAAGAC+GGG - Chr2:27656860-27656879 None:intergenic 35.0%
ATGTAAGCAGACAAACATTG+AGG - Chr2:27651701-27651720 None:intergenic 35.0%
ATTAAGTAAGTTGCTCTTGG+AGG + Chr2:27657087-27657106 MsG0280008239.01.T01:intron 35.0%
ATTCTTACTTCCTTTGCAGA+AGG - Chr2:27655381-27655400 None:intergenic 35.0%
CAAAACAAGACCTTTCCTAT+TGG - Chr2:27652871-27652890 None:intergenic 35.0%
CAATATTTGAGGGATTTGGA+GGG - Chr2:27656088-27656107 None:intergenic 35.0%
CCAACATATGGAACATTAGA+CGG - Chr2:27655916-27655935 None:intergenic 35.0%
CGGTTAGTGGAATTCTAATA+GGG + Chr2:27653891-27653910 MsG0280008239.01.T01:intron 35.0%
CTATTGCAAACTTGCAACAA+TGG - Chr2:27655475-27655494 None:intergenic 35.0%
CTGTGCTACCACAAAATATT+TGG - Chr2:27657676-27657695 None:intergenic 35.0%
CTTGGCATACATTCATAAAC+TGG - Chr2:27657159-27657178 None:intergenic 35.0%
GAAAGTTACCAACTTTAACG+AGG + Chr2:27655539-27655558 MsG0280008239.01.T01:intron 35.0%
GAAATATGTGCAACAACGTA+AGG + Chr2:27655861-27655880 MsG0280008239.01.T01:CDS 35.0%
GAGATAAGGATGATGAGATT+GGG - Chr2:27655569-27655588 None:intergenic 35.0%
GATCATTGAGTGCTTGAAAA+GGG + Chr2:27652687-27652706 MsG0280008239.01.T01:CDS 35.0%
GATCTAGACTTTGGTTATGA+TGG + Chr2:27657771-27657790 MsG0280008239.01.T01:CDS 35.0%
GATGCTTTGTCAACTTTGTT+AGG + Chr2:27653401-27653420 MsG0280008239.01.T01:CDS 35.0%
GCCCAAAAAATCAATTGGAT+TGG - Chr2:27656414-27656433 None:intergenic 35.0%
GCGACAAAATCATTGAAGAA+AGG - Chr2:27657236-27657255 None:intergenic 35.0%
GGAAATGTATTAGTATGCAG+TGG + Chr2:27654746-27654765 MsG0280008239.01.T01:intron 35.0%
GGAGCCAAAATTAATTCTAG+AGG - Chr2:27652313-27652332 None:intergenic 35.0%
GTATGATTGTGTTGAAGCAA+TGG - Chr2:27656879-27656898 None:intergenic 35.0%
GTTCAAGAGAAAACCCAAAA+AGG + Chr2:27657611-27657630 MsG0280008239.01.T01:CDS 35.0%
GTTTCTTGGTATAAGTACCT+AGG - Chr2:27654896-27654915 None:intergenic 35.0%
TAAACTACATCGTAATGAGC+AGG - Chr2:27656959-27656978 None:intergenic 35.0%
TAAAGAGCCAACAGATTCAT+AGG - Chr2:27658006-27658025 None:intergenic 35.0%
TAAATACCTCCTTGCACAAA+AGG - Chr2:27652000-27652019 None:intergenic 35.0%
TAGATGCTATAAGCAGATGA+AGG - Chr2:27652829-27652848 None:intergenic 35.0%
TATCGGTGATCGATAAAAAC+TGG + Chr2:27653731-27653750 MsG0280008239.01.T01:CDS 35.0%
TATGGACGAAAAGCAAAAAG+GGG + Chr2:27652510-27652529 MsG0280008239.01.T01:intron 35.0%
TCAATATTTGAGGGATTTGG+AGG - Chr2:27656089-27656108 None:intergenic 35.0%
TCACAAACTCGTACAATGTT+GGG - Chr2:27655116-27655135 None:intergenic 35.0%
TCTATTATTCGGATCTTCCA+TGG + Chr2:27652845-27652864 MsG0280008239.01.T01:CDS 35.0%
TCTTGTATATAACCAAGGGT+TGG + Chr2:27656340-27656359 MsG0280008239.01.T01:intron 35.0%
TGAATCAATGCAAATCTACC+CGG - Chr2:27655190-27655209 None:intergenic 35.0%
TGCTTTGTCAACTTTGTTAG+GGG + Chr2:27653403-27653422 MsG0280008239.01.T01:CDS 35.0%
TGGAATTCTAATAGGGAAAG+CGG + Chr2:27653898-27653917 MsG0280008239.01.T01:intron 35.0%
TGGTCCATTCATTTAATCCA+AGG - Chr2:27654263-27654282 None:intergenic 35.0%
TTGTACTCCACTTCATTGTT+TGG - Chr2:27654283-27654302 None:intergenic 35.0%
TTTAATTGCTCGTGATCAGA+AGG - Chr2:27656904-27656923 None:intergenic 35.0%
TTTATGAAATGCGGGATTCA+TGG - Chr2:27654379-27654398 None:intergenic 35.0%
TTTCCTTGAATGTGCTTAGT+AGG + Chr2:27655057-27655076 MsG0280008239.01.T01:intron 35.0%
! ACCAGGAATCATCAATTTTG+CGG + Chr2:27655809-27655828 MsG0280008239.01.T01:CDS 35.0%
! ATTAGGGTATTACCAGAATC+AGG - Chr2:27651776-27651795 None:intergenic 35.0%
! GATGCATCATCATCAACTTT+TGG + Chr2:27655940-27655959 MsG0280008239.01.T01:CDS 35.0%
! GCAAAAAGGGGTATATTTGT+TGG + Chr2:27652522-27652541 MsG0280008239.01.T01:intron 35.0%
! GGAGTCTTGTATATAACCAA+GGG + Chr2:27656336-27656355 MsG0280008239.01.T01:intron 35.0%
! GTTCAATAATTTGGAACGGA+TGG - Chr2:27656163-27656182 None:intergenic 35.0%
! GTTGTAAGGAAACCATGTTT+TGG + Chr2:27651659-27651678 MsG0280008239.01.T01:CDS 35.0%
! TACCTGCTTTGATAACACTT+AGG + Chr2:27652976-27652995 MsG0280008239.01.T01:intron 35.0%
! TACTATGGCTTCTTTTATGC+TGG - Chr2:27655432-27655451 None:intergenic 35.0%
! TGGAGTCTTGTATATAACCA+AGG + Chr2:27656335-27656354 MsG0280008239.01.T01:intron 35.0%
! TTAGGGTATTACCAGAATCA+GGG - Chr2:27651775-27651794 None:intergenic 35.0%
!! AAGGAGAGCGTTAAATGTTA+TGG + Chr2:27656602-27656621 MsG0280008239.01.T01:intron 35.0%
!! ATATATGGTCTCACTTTTGG+AGG - Chr2:27652334-27652353 None:intergenic 35.0%
!! TCATCATCAACTTTTGGAAG+TGG + Chr2:27655946-27655965 MsG0280008239.01.T01:CDS 35.0%
!! TTTGTTTGCTGCTCCTTTTT+GGG - Chr2:27657627-27657646 None:intergenic 35.0%
!!! ATTTTGTCGCTTTCACTTCA+AGG + Chr2:27657246-27657265 MsG0280008239.01.T01:intron 35.0%
!!! CAAATTCCTTATTTTGAGGC+TGG + Chr2:27652631-27652650 MsG0280008239.01.T01:CDS 35.0%
!!! CAATAGGAAAGGTCTTGTTT+TGG + Chr2:27652869-27652888 MsG0280008239.01.T01:CDS 35.0%
!!! TTTCGTTTTTTGTTTGGTGG+TGG + Chr2:27652592-27652611 MsG0280008239.01.T01:intron 35.0%
!!! TTTTGTTTGGTGGTGGTTTA+TGG + Chr2:27652599-27652618 MsG0280008239.01.T01:intron 35.0%
AACATAAGCATGGAATGACG+AGG - Chr2:27653547-27653566 None:intergenic 40.0%
AACATCGGAGACGTAAATGT+CGG - Chr2:27653056-27653075 None:intergenic 40.0%
AAGTTCACATTCTGCAGTGT+AGG - Chr2:27655679-27655698 None:intergenic 40.0%
ACATCACACAGCAAGTTTCT+TGG - Chr2:27654910-27654929 None:intergenic 40.0%
AGAATGTAAGATGACCCAGA+AGG - Chr2:27651936-27651955 None:intergenic 40.0%
AGACAAACATTGAGGACAAC+CGG - Chr2:27651693-27651712 None:intergenic 40.0%
AGCTTAGGAAAGTTCCAAAG+AGG - Chr2:27654142-27654161 None:intergenic 40.0%
AGGAATTCGAAGTAGATCCT+AGG + Chr2:27654852-27654871 MsG0280008239.01.T01:intron 40.0%
AGGTGCTTCTACTCTTCATT+TGG - Chr2:27654402-27654421 None:intergenic 40.0%
ATAGATCCAACATGACTGCA+AGG + Chr2:27655491-27655510 MsG0280008239.01.T01:intron 40.0%
ATATGTTCATCAGCGGTTAG+TGG + Chr2:27653878-27653897 MsG0280008239.01.T01:intron 40.0%
ATCACCGATATTAACCCAAG+TGG - Chr2:27653721-27653740 None:intergenic 40.0%
ATGCACTTGAGTACGAACTT+TGG + Chr2:27652791-27652810 MsG0280008239.01.T01:CDS 40.0%
ATGCTTGGAATATGTAGCAC+AGG - Chr2:27654422-27654441 None:intergenic 40.0%
ATGGATGAAAATGCAAGCCT+AGG + Chr2:27657790-27657809 MsG0280008239.01.T01:exon 40.0%
ATTTGGAGGGAAGAGAAGAT+AGG - Chr2:27656075-27656094 None:intergenic 40.0%
CAAAAAGGAGCAGCAAACAA+AGG + Chr2:27657626-27657645 MsG0280008239.01.T01:CDS 40.0%
CAAACAGTGATTCCAACACT+AGG + Chr2:27654832-27654851 MsG0280008239.01.T01:intron 40.0%
CAAAGAATCTGTGTGTTGTG+TGG + Chr2:27653755-27653774 MsG0280008239.01.T01:CDS 40.0%
CACTTCAACTCAATTTCTGC+CGG - Chr2:27652109-27652128 None:intergenic 40.0%
CACTTTGTACGATAGATCCT+AGG + Chr2:27654876-27654895 MsG0280008239.01.T01:intron 40.0%
CATCTTAACTACCCTGATTC+TGG + Chr2:27651761-27651780 MsG0280008239.01.T01:CDS 40.0%
CATTAGAGTCGTGTCAGTAT+CGG - Chr2:27653095-27653114 None:intergenic 40.0%
CCGTCTAATGTTCCATATGT+TGG + Chr2:27655913-27655932 MsG0280008239.01.T01:CDS 40.0%
CTACTTCGAATTCCTAGTGT+TGG - Chr2:27654847-27654866 None:intergenic 40.0%
CTTAGGAAAGTTCCAAAGAG+GGG - Chr2:27654140-27654159 None:intergenic 40.0%
GAAATCCATAAGCAGGGATT+CGG - Chr2:27656004-27656023 None:intergenic 40.0%
GAATCACCAGCCTCAAAATA+AGG - Chr2:27652640-27652659 None:intergenic 40.0%
GAATGGACCAAACAATGAAG+TGG + Chr2:27654273-27654292 MsG0280008239.01.T01:intron 40.0%
GACGTAGGTGATTTAGATAC+TGG + Chr2:27652709-27652728 MsG0280008239.01.T01:CDS 40.0%
GCGGTTAGTGGAATTCTAAT+AGG + Chr2:27653890-27653909 MsG0280008239.01.T01:intron 40.0%
GCTTAGGAAAGTTCCAAAGA+GGG - Chr2:27654141-27654160 None:intergenic 40.0%
GGATCATTGAGTGCTTGAAA+AGG + Chr2:27652686-27652705 MsG0280008239.01.T01:CDS 40.0%
GGCTCCTCTTCAATATTTGA+GGG - Chr2:27656098-27656117 None:intergenic 40.0%
GTCACAAACTCGTACAATGT+TGG - Chr2:27655117-27655136 None:intergenic 40.0%
GTCCTAAGTGTTATCAAAGC+AGG - Chr2:27652981-27653000 None:intergenic 40.0%
GTCGATGTACTTGTGACTAA+TGG + Chr2:27653688-27653707 MsG0280008239.01.T01:intron 40.0%
TACTTGTGACTAATGGCAGT+TGG + Chr2:27653695-27653714 MsG0280008239.01.T01:intron 40.0%
TCTATCGTACAAAGTGACCT+AGG - Chr2:27654872-27654891 None:intergenic 40.0%
TGAAGAGGAGCCAAAATTGA+TGG + Chr2:27656106-27656125 MsG0280008239.01.T01:intron 40.0%
TGATTGTGTTTGAGCCTTCT+GGG + Chr2:27651919-27651938 MsG0280008239.01.T01:intron 40.0%
TGCACTTGAGTACGAACTTT+GGG + Chr2:27652792-27652811 MsG0280008239.01.T01:CDS 40.0%
TGCTGACGTAAAAGAAGAAG+AGG + Chr2:27652939-27652958 MsG0280008239.01.T01:CDS 40.0%
TGGCTCCTCTTCAATATTTG+AGG - Chr2:27656099-27656118 None:intergenic 40.0%
TGTCTCTTGATGAACCAAGT+TGG - Chr2:27653989-27654008 None:intergenic 40.0%
TTAGGAAAGTTCCAAAGAGG+GGG - Chr2:27654139-27654158 None:intergenic 40.0%
TTGATTGTGTTTGAGCCTTC+TGG + Chr2:27651918-27651937 MsG0280008239.01.T01:intron 40.0%
TTGGCCACTTGGGTTAATAT+CGG + Chr2:27653714-27653733 MsG0280008239.01.T01:CDS 40.0%
TTTATGTAGGCCATCAAGCT+TGG + Chr2:27653570-27653589 MsG0280008239.01.T01:intron 40.0%
! AATAATTTGGAACGGATGGG+AGG - Chr2:27656159-27656178 None:intergenic 40.0%
! ATAATTTGGAACGGATGGGA+GGG - Chr2:27656158-27656177 None:intergenic 40.0%
! ATGTCTGGAATCAGTGATGA+CGG + Chr2:27657726-27657745 MsG0280008239.01.T01:CDS 40.0%
! CTAGTGTTGGAATCACTGTT+TGG - Chr2:27654834-27654853 None:intergenic 40.0%
! CTTTTATGCTGGAAGCAACA+GGG - Chr2:27655421-27655440 None:intergenic 40.0%
! CTTTTTCTCAGTGTCATGTC+TGG + Chr2:27657711-27657730 MsG0280008239.01.T01:CDS 40.0%
! GCAAAATTGATGATTCCTGG+TGG - Chr2:27655810-27655829 None:intergenic 40.0%
! TCCGCAAAATTGATGATTCC+TGG - Chr2:27655813-27655832 None:intergenic 40.0%
! TCTTTTATGCTGGAAGCAAC+AGG - Chr2:27655422-27655441 None:intergenic 40.0%
! TGCTGCATGTGTTTTCTATC+TGG + Chr2:27653310-27653329 MsG0280008239.01.T01:intron 40.0%
!! CTTTGTTTGCTGCTCCTTTT+TGG - Chr2:27657628-27657647 None:intergenic 40.0%
!!! GTTTTGGTTCCTTTTGTGCA+AGG + Chr2:27651988-27652007 MsG0280008239.01.T01:intron 40.0%
AAACATTGAGGACAACCGGT+TGG - Chr2:27651689-27651708 None:intergenic 45.0%
AAAGGAGCAGCAAACAAAGG+AGG + Chr2:27657629-27657648 MsG0280008239.01.T01:CDS 45.0%
AAATGCGGGATTCATGGCAA+GGG - Chr2:27654373-27654392 None:intergenic 45.0%
AACATTGAGGACAACCGGTT+GGG - Chr2:27651688-27651707 None:intergenic 45.0%
AAGACCTTTCCTATTGGCCA+TGG - Chr2:27652865-27652884 None:intergenic 45.0%
ACAGATTCATAGGTCCTCTC+AGG - Chr2:27657996-27658015 None:intergenic 45.0%
ACTCGAGAGTTCAACGACTA+TGG - Chr2:27655088-27655107 None:intergenic 45.0%
ACTGACATTGACACAGTCAC+TGG - Chr2:27653170-27653189 None:intergenic 45.0%
ACTTGAGTACGAACTTTGGG+TGG + Chr2:27652795-27652814 MsG0280008239.01.T01:CDS 45.0%
ATAAGCATGGAATGACGAGG+AGG - Chr2:27653544-27653563 None:intergenic 45.0%
ATCTTCCGAATCCCTGCTTA+TGG + Chr2:27655996-27656015 MsG0280008239.01.T01:intron 45.0%
CACATAGAATCGCGAGTTTG+AGG + Chr2:27655218-27655237 MsG0280008239.01.T01:intron 45.0%
CATTGACCTTGCAGTCATGT+TGG - Chr2:27655500-27655519 None:intergenic 45.0%
CCAGCTACACACTGTGTTAA+AGG + Chr2:27656226-27656245 MsG0280008239.01.T01:intron 45.0%
CCTTTAACACAGTGTGTAGC+TGG - Chr2:27656229-27656248 None:intergenic 45.0%
CGTTCATCATCTTGATGAGC+AGG + Chr2:27654104-27654123 MsG0280008239.01.T01:intron 45.0%
CTCTCAACTTCCATTCCACT+TGG + Chr2:27651733-27651752 MsG0280008239.01.T01:CDS 45.0%
CTGTCAAGTAACGGCTATTG+CGG + Chr2:27657377-27657396 MsG0280008239.01.T01:intron 45.0%
CTTGAGTACGAACTTTGGGT+GGG + Chr2:27652796-27652815 MsG0280008239.01.T01:CDS 45.0%
GAGAGGACCTATGAATCTGT+TGG + Chr2:27657996-27658015 MsG0280008239.01.T01:three_prime_UTR 45.0%
GATGCATCAGCACCAACATA+TGG - Chr2:27655928-27655947 None:intergenic 45.0%
GCAAACTTGCAACAATGGGT+GGG - Chr2:27655470-27655489 None:intergenic 45.0%
GCGTAGTCGGTAGTATTGTA+GGG + Chr2:27652430-27652449 MsG0280008239.01.T01:intron 45.0%
GGAGAACTTATAGAAGCTGC+TGG + Chr2:27655883-27655902 MsG0280008239.01.T01:CDS 45.0%
GGTGAAGTCGAGTTAGATGA+TGG + Chr2:27657747-27657766 MsG0280008239.01.T01:CDS 45.0%
GTATGCAGTGGAACCTTTGT+AGG + Chr2:27654758-27654777 MsG0280008239.01.T01:intron 45.0%
GTGTATCTTCACTCCCTGAA+TGG + Chr2:27652731-27652750 MsG0280008239.01.T01:CDS 45.0%
TAACACAGTGTGTAGCTGGA+GGG - Chr2:27656225-27656244 None:intergenic 45.0%
TCCTGCATTTATGTACCACC+AGG + Chr2:27655792-27655811 MsG0280008239.01.T01:CDS 45.0%
TCCTGGTGGTACATAAATGC+AGG - Chr2:27655796-27655815 None:intergenic 45.0%
TCTTCCATGGCCAATAGGAA+AGG + Chr2:27652858-27652877 MsG0280008239.01.T01:CDS 45.0%
TGCAAACTTGCAACAATGGG+TGG - Chr2:27655471-27655490 None:intergenic 45.0%
TGCCAACACAAGCTGAACAT+CGG - Chr2:27653071-27653090 None:intergenic 45.0%
TGCGTAGTCGGTAGTATTGT+AGG + Chr2:27652429-27652448 MsG0280008239.01.T01:intron 45.0%
TGGGTTTCCCTCGTTAAAGT+TGG - Chr2:27655550-27655569 None:intergenic 45.0%
TTAACACAGTGTGTAGCTGG+AGG - Chr2:27656226-27656245 None:intergenic 45.0%
TTGTACGAGTTTGTGACCCA+AGG + Chr2:27655120-27655139 MsG0280008239.01.T01:intron 45.0%
! ACCTTGGTTGGTATCCATTC+AGG - Chr2:27652748-27652767 None:intergenic 45.0%
! CCTTGGTTGGTATCCATTCA+GGG - Chr2:27652747-27652766 None:intergenic 45.0%
! GATGATGGCGATCTAGACTT+TGG + Chr2:27657762-27657781 MsG0280008239.01.T01:CDS 45.0%
! GGAACAACACCCTTGTTGTA+AGG + Chr2:27651645-27651664 MsG0280008239.01.T01:CDS 45.0%
! TTGGTTCCTTTTGTGCAAGG+AGG + Chr2:27651991-27652010 MsG0280008239.01.T01:intron 45.0%
!! AAGGGTGTTGTTCCTTTGTG+TGG - Chr2:27651639-27651658 None:intergenic 45.0%
!! GTCATTGACTTCCGACACAT+TGG + Chr2:27657040-27657059 MsG0280008239.01.T01:intron 45.0%
!!! GACATGCTTTTTCACCTGAG+AGG + Chr2:27657979-27657998 MsG0280008239.01.T01:three_prime_UTR 45.0%
!!! GTTTTGGAAGAAAGCTCGCT+GGG + Chr2:27652885-27652904 MsG0280008239.01.T01:CDS 45.0%
!!! TGTTTTGGAAGAAAGCTCGC+TGG + Chr2:27652884-27652903 MsG0280008239.01.T01:CDS 45.0%
AACGGATGGGAGGGAAATGA+AGG - Chr2:27656149-27656168 None:intergenic 50.0%
ACGGATGGGAGGGAAATGAA+GGG - Chr2:27656148-27656167 None:intergenic 50.0%
ACTAATGGCAGTTGGCCACT+TGG + Chr2:27653703-27653722 MsG0280008239.01.T01:intron 50.0%
AGTGTGTAGCTGGAGGGAAA+TGG - Chr2:27656219-27656238 None:intergenic 50.0%
CATCTTGATGAGCAGGTACC+TGG + Chr2:27654111-27654130 MsG0280008239.01.T01:intron 50.0%
CCCTGAATGGATACCAACCA+AGG + Chr2:27652744-27652763 MsG0280008239.01.T01:CDS 50.0%
CTAATGGCAGTTGGCCACTT+GGG + Chr2:27653704-27653723 MsG0280008239.01.T01:intron 50.0%
CTCCGATGTTCAGCTTGTGT+TGG + Chr2:27653066-27653085 MsG0280008239.01.T01:intron 50.0%
GAAATGCGGGATTCATGGCA+AGG - Chr2:27654374-27654393 None:intergenic 50.0%
GAGTGCTTGAAAAGGGACGT+AGG + Chr2:27652694-27652713 MsG0280008239.01.T01:CDS 50.0%
TCGGATCTTCCATGGCCAAT+AGG + Chr2:27652853-27652872 MsG0280008239.01.T01:CDS 50.0%
TGTAGCTGGAGGGAAATGGA+GGG - Chr2:27656215-27656234 None:intergenic 50.0%
!!! CCATGTTTTGGTCTCCCAAC+CGG + Chr2:27651671-27651690 MsG0280008239.01.T01:CDS 50.0%
ATGCAATCCACTCGCGTTGG+TGG + Chr2:27656451-27656470 MsG0280008239.01.T01:intron 55.0%
CCAAGTTGTGAGCAGCACCT+TGG - Chr2:27652764-27652783 None:intergenic 55.0%
CCGGTTGGGAGACCAAAACA+TGG - Chr2:27651674-27651693 None:intergenic 55.0%
GTGTAGCTGGAGGGAAATGG+AGG - Chr2:27656216-27656235 None:intergenic 55.0%
GTTGTGAGCAGCACCTTGGT+TGG - Chr2:27652760-27652779 None:intergenic 55.0%
TGGCAAGGGCAGCCGTATAT+AGG - Chr2:27654359-27654378 None:intergenic 55.0%
! TGCAATCCACTCGCGTTGGT+GGG + Chr2:27656452-27656471 MsG0280008239.01.T01:intron 55.0%
!! AGTTCCAAAGAGGGGGTACC+AGG - Chr2:27654132-27654151 None:intergenic 55.0%
!! CAACGCGAGTGGATTGCATC+GGG - Chr2:27656450-27656469 None:intergenic 55.0%
!! CCAACGCGAGTGGATTGCAT+CGG - Chr2:27656451-27656470 None:intergenic 55.0%
!! CCAAGGTGCTGCTCACAACT+TGG + Chr2:27652761-27652780 MsG0280008239.01.T01:CDS 55.0%
AGCTGGAGGGAAATGGAGGG+AGG - Chr2:27656212-27656231 None:intergenic 60.0%
CCGATGCAATCCACTCGCGT+TGG + Chr2:27656448-27656467 MsG0280008239.01.T01:intron 60.0%
CTGGAGGGAAATGGAGGGAG+GGG - Chr2:27656210-27656229 None:intergenic 60.0%
GCTGGAGGGAAATGGAGGGA+GGG - Chr2:27656211-27656230 None:intergenic 60.0%
GGAGAGCTGCACGAGCGAAA+AGG - Chr2:27654512-27654531 None:intergenic 60.0%
GGTACCTGGTACCCCCTCTT+TGG + Chr2:27654125-27654144 MsG0280008239.01.T01:intron 60.0%
! GCAATCCACTCGCGTTGGTG+GGG + Chr2:27656453-27656472 MsG0280008239.01.T01:intron 60.0%
CAGTACCCCACCAACGCGAG+TGG - Chr2:27656461-27656480 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 27651620 27658163 27651620 ID=MsG0280008239.01;Name=MsG0280008239.01
Chr2 mRNA 27651620 27658163 27651620 ID=MsG0280008239.01.T01;Parent=MsG0280008239.01;Name=MsG0280008239.01.T01;_AED=0.40;_eAED=0.43;_QI=0|0.2|0.16|1|1|1|6|366|347
Chr2 exon 27651620 27651782 27651620 ID=MsG0280008239.01.T01:exon:18902;Parent=MsG0280008239.01.T01
Chr2 exon 27652629 27652960 27652629 ID=MsG0280008239.01.T01:exon:18903;Parent=MsG0280008239.01.T01
Chr2 exon 27653374 27653450 27653374 ID=MsG0280008239.01.T01:exon:18904;Parent=MsG0280008239.01.T01
Chr2 exon 27653714 27653784 27653714 ID=MsG0280008239.01.T01:exon:18905;Parent=MsG0280008239.01.T01
Chr2 exon 27655773 27655979 27655773 ID=MsG0280008239.01.T01:exon:18906;Parent=MsG0280008239.01.T01
Chr2 exon 27657604 27658163 27657604 ID=MsG0280008239.01.T01:exon:18907;Parent=MsG0280008239.01.T01
Chr2 CDS 27651620 27651782 27651620 ID=MsG0280008239.01.T01:cds;Parent=MsG0280008239.01.T01
Chr2 CDS 27652629 27652960 27652629 ID=MsG0280008239.01.T01:cds;Parent=MsG0280008239.01.T01
Chr2 CDS 27653374 27653450 27653374 ID=MsG0280008239.01.T01:cds;Parent=MsG0280008239.01.T01
Chr2 CDS 27653714 27653784 27653714 ID=MsG0280008239.01.T01:cds;Parent=MsG0280008239.01.T01
Chr2 CDS 27655773 27655979 27655773 ID=MsG0280008239.01.T01:cds;Parent=MsG0280008239.01.T01
Chr2 CDS 27657604 27657797 27657604 ID=MsG0280008239.01.T01:cds;Parent=MsG0280008239.01.T01
Chr2 three_prime_UTR 27657798 27658163 27657798 ID=MsG0280008239.01.T01:three_prime_utr;Parent=MsG0280008239.01.T01
Gene Sequence

>MsG0280008239.01.T01

ATGGAATCGAATGATACCACACAAAGGAACAACACCCTTGTTGTAAGGAAACCATGTTTTGGTCTCCCAACCGGTTGTCCTCAATGTTTGTCTGCTTACATCTTTCTCAAACTCTCTCAACTTCCATTCCACTTGGATTATCATCTTAACTACCCTGATTCTGATCAAATTCCTTATTTTGAGGCTGGTGATTCTGTGACATATAATAATGAGAAGGAAGGGATCATTGAGTGCTTGAAAAGGGACGTAGGTGATTTAGATACTGGTGTATCTTCACTCCCTGAATGGATACCAACCAAGGTGCTGCTCACAACTTGGCTTGCTGATGCACTTGAGTACGAACTTTGGGTGGGAAGTGACCCTTCATCTGCTTATAGCATCTATTATTCGGATCTTCCATGGCCAATAGGAAAGGTCTTGTTTTGGAAGAAAGCTCGCTGGGTGAAGCAGAAACATGAGATAAGTAACGACAATGCTGACGTAAAAGAAGAAGAGATTTATCGAAAAGCAAATTCTGCATATGATGCTTTGTCAACTTTGTTAGGGGAAGAAGATTACTTACTTGAAAACAGTTGGCCACTTGGGTTAATATCGGTGATCGATAAAAACTGGACAAAGAATCTGTGTGTTGTGTGGTACAAGAGAACTGTTTTAACTTGGGTTCCTGCATTTATGTACCACCAGGAATCATCAATTTTGCGGACCAATTTTTTGAAACATGCTAATTTGGTGAAATATGTGCAACAACGTAAGGGAGAACTTATAGAAGCTGCTGGTACGTCTCCGTCTAATGTTCCATATGTTGGTGCTGATGCATCATCATCAACTTTTGGAAGTGGTTCAACTTCAAGTTCAAAGTTCAAGAGAAAACCCAAAAAGGAGCAGCAAACAAAGGAGGATAAGAAATATAAAAGAAGAGCCAAATATTTTGTGGTAGCACAGCTAGTTGCAGTTGTTCTTTTTCTCAGTGTCATGTCTGGAATCAGTGATGACGGTGAAGTCGAGTTAGATGATGGCGATCTAGACTTTGGTTATGATGGATGA

Protein sequence

>MsG0280008239.01.T01

MESNDTTQRNNTLVVRKPCFGLPTGCPQCLSAYIFLKLSQLPFHLDYHLNYPDSDQIPYFEAGDSVTYNNEKEGIIECLKRDVGDLDTGVSSLPEWIPTKVLLTTWLADALEYELWVGSDPSSAYSIYYSDLPWPIGKVLFWKKARWVKQKHEISNDNADVKEEEIYRKANSAYDALSTLLGEEDYLLENSWPLGLISVIDKNWTKNLCVVWYKRTVLTWVPAFMYHQESSILRTNFLKHANLVKYVQQRKGELIEAAGTSPSNVPYVGADASSSTFGSGSTSSSKFKRKPKKEQQTKEDKKYKRRAKYFVVAQLVAVVLFLSVMSGISDDGEVELDDGDLDFGYDG*