AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012248.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012248.01.T01 MTR_3g019330 79.361 407 24 2 23 369 47 453 0.0 622
MsG0380012248.01.T01 MTR_4g088440 64.729 258 31 2 45 242 1 258 2.83e-105 310
MsG0380012248.01.T01 MTR_4g088440 56.522 184 20 2 31 154 1 184 4.16e-55 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012248.01.T01 AT1G50910 37.600 250 92 5 33 220 4 251 1.06e-38 144
MsG0380012248.01.T01 AT1G50910 48.000 100 48 3 123 220 11 108 7.09e-19 87.4

Find 76 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTCATTTCCCATTAAA+TGG 0.136928 3:+13293737 None:intergenic
GGCTAAGTCATTCCATTTAA+TGG 0.180830 3:-13293749 MsG0380012248.01.T01:CDS
ATTAGGTGAGGAGGGATTTA+AGG 0.196911 3:-13297350 MsG0380012248.01.T01:intron
GCATCAGCTTCACCTGTTTC+CGG 0.212329 3:+13294078 None:intergenic
AAAAGATGAATCTTCTGTTT+TGG 0.292424 3:+13297261 None:intergenic
GCTAAGTCATTCCATTTAAT+GGG 0.320185 3:-13293748 MsG0380012248.01.T01:CDS
CATCAGCTTCACCTGTTTCC+GGG 0.349089 3:+13294079 None:intergenic
GCTTCTGCAGTTGGCAAACT+TGG 0.355509 3:-13297328 MsG0380012248.01.T01:CDS
CAAATCAGTATTTGTATCCT+TGG 0.357761 3:+13294029 None:intergenic
ACTTGAGAGGAAGCATAAAA+AGG 0.361049 3:-13294479 MsG0380012248.01.T01:CDS
GACACTATCGAGTCTATTCT+TGG 0.365745 3:-13294391 MsG0380012248.01.T01:CDS
CACCCTCTGGTGAAGATTCA+TGG 0.372177 3:+13293914 None:intergenic
AACATGAGTAAGTGTATGTT+TGG 0.372305 3:-13298449 MsG0380012248.01.T01:CDS
ACCGGTAGGAAACTCCATTC+TGG 0.388812 3:-13293865 MsG0380012248.01.T01:CDS
TCTTGTATACCAATCTTTCA+AGG 0.403473 3:+13297652 None:intergenic
AATCTTTCTGTTCAAGCATC+AGG 0.410309 3:-13294424 MsG0380012248.01.T01:CDS
AAAAGTCAATTCATTCTTCA+CGG 0.421028 3:+13293522 None:intergenic
GACCAACATGACCCGGAAAC+AGG 0.424431 3:-13294090 MsG0380012248.01.T01:CDS
ACGTTACATTAGAGTGTGTC+TGG 0.443288 3:-13294522 MsG0380012248.01.T01:CDS
ACACTATCGAGTCTATTCTT+GGG 0.448985 3:-13294390 MsG0380012248.01.T01:CDS
TACTGAATTTGAAACAATTG+AGG 0.464733 3:-13297721 MsG0380012248.01.T01:CDS
GGATTTAAGGCTTCTGCAGT+TGG 0.473619 3:-13297337 MsG0380012248.01.T01:CDS
AATAACTCATGAGGGAATAG+AGG 0.478056 3:-13294722 MsG0380012248.01.T01:intron
AGCTGATGCTGCAGCTAAAG+AGG 0.480936 3:-13294064 MsG0380012248.01.T01:CDS
ACTGTGTTTGGTAGTGAGGA+AGG 0.486974 3:-13293970 MsG0380012248.01.T01:CDS
TCTGCAGTTGGCAAACTTGG+AGG 0.495185 3:-13297325 MsG0380012248.01.T01:CDS
GGAGACTGTGTTTGGTAGTG+AGG 0.498718 3:-13293974 MsG0380012248.01.T01:CDS
TAATCATCGTCATCACTAGC+AGG 0.508322 3:+13294544 None:intergenic
GAAAATGCAATGATGAAAAG+AGG 0.510608 3:-13296832 MsG0380012248.01.T01:CDS
GATAATTTATTAGGTGAGGA+GGG 0.511623 3:-13297358 MsG0380012248.01.T01:intron
CACCTGTTTCCGGGTCATGT+TGG 0.511939 3:+13294088 None:intergenic
GCATTATCACAGTCTTCAAC+CGG 0.513144 3:-13293883 MsG0380012248.01.T01:CDS
TGTTTCATGACAGCTTGAAA+AGG 0.514585 3:-13296856 MsG0380012248.01.T01:intron
TTTAGATTGCAAGGATTCGA+TGG 0.520597 3:-13297745 MsG0380012248.01.T01:CDS
ACTGAATTTGAAACAATTGA+GGG 0.522339 3:-13297720 MsG0380012248.01.T01:CDS
CCACCTTCTTCGAACCAGAA+TGG 0.522400 3:+13293851 None:intergenic
CATTGTTGATTTGTTCAACA+TGG 0.528069 3:-13294779 MsG0380012248.01.T01:CDS
TAAAATCATCGATTTGCGAC+GGG 0.534590 3:+13293998 None:intergenic
TATTTGTATCCTTGGCATGA+GGG 0.539730 3:+13294037 None:intergenic
GCAGATAATAGCTCGGCTGT+TGG 0.539928 3:-13297769 MsG0380012248.01.T01:intron
CACTATCGAGTCTATTCTTG+GGG 0.541164 3:-13294389 MsG0380012248.01.T01:CDS
TGATAATTTATTAGGTGAGG+AGG 0.543150 3:-13297359 MsG0380012248.01.T01:intron
GCTGTTGGATTTAGATTGCA+AGG 0.544705 3:-13297754 MsG0380012248.01.T01:CDS
CAAGGATGCCACACTCACAT+TGG 0.547673 3:+13297670 None:intergenic
GTGTGGCATCCTTGAAAGAT+TGG 0.553976 3:-13297661 MsG0380012248.01.T01:intron
ACTCCATTCTGGTTCGAAGA+AGG 0.554049 3:-13293854 MsG0380012248.01.T01:CDS
GAAAGTCAAGGTGAGGACTC+TGG 0.554428 3:-13294451 MsG0380012248.01.T01:CDS
TTTGGTGGTACTGGTACAGT+AGG 0.557194 3:-13293580 MsG0380012248.01.T01:three_prime_UTR
TTAGATTGCAAGGATTCGAT+GGG 0.566475 3:-13297744 MsG0380012248.01.T01:CDS
ACCAGAATGGAGTTTCCTAC+CGG 0.567188 3:+13293864 None:intergenic
TTTGTTTGCAGATAATAGCT+CGG 0.568626 3:-13297776 MsG0380012248.01.T01:intron
CTCCATGAATCTTCACCAGA+GGG 0.573969 3:-13293916 MsG0380012248.01.T01:CDS
GTATTTGTATCCTTGGCATG+AGG 0.575829 3:+13294036 None:intergenic
TGTGTTAACTAGCAATGCTA+AGG 0.578852 3:-13293770 MsG0380012248.01.T01:CDS
AATGCATGCAAGTCACCCTC+TGG 0.581592 3:+13293901 None:intergenic
TGCAGATGACCAACATGACC+CGG 0.583493 3:-13294097 MsG0380012248.01.T01:intron
ATTTGTATCCTTGGCATGAG+GGG 0.586172 3:+13294038 None:intergenic
GTGTTTGGTAGTGAGGAAGG+AGG 0.586867 3:-13293967 MsG0380012248.01.T01:CDS
TTTGTATCCTTGGCATGAGG+GGG 0.597493 3:+13294039 None:intergenic
TAAGTGTATGTTTGGTTATG+CGG 0.599591 3:-13298441 MsG0380012248.01.T01:intron
ATAAGTATATATTACTTGAG+AGG 0.601355 3:-13294492 MsG0380012248.01.T01:CDS
ATCTGCACGGCTACTAGAAG+AGG 0.602955 3:-13296786 MsG0380012248.01.T01:intron
CCATTCTGGTTCGAAGAAGG+TGG 0.605575 3:-13293851 MsG0380012248.01.T01:CDS
ACTTACTAATGTAAATCCAA+AGG 0.608539 3:-13293674 MsG0380012248.01.T01:CDS
TCACAGCTCCAATGTGAGTG+TGG 0.609139 3:-13297678 MsG0380012248.01.T01:CDS
TGGTGAAGATTCATGGAGAG+AGG 0.611678 3:+13293921 None:intergenic
ATAAAATCATCGATTTGCGA+CGG 0.620309 3:+13293997 None:intergenic
GGAGAATGAAAGTCAAGGTG+AGG 0.625016 3:-13294458 MsG0380012248.01.T01:CDS
TCTCCATGAATCTTCACCAG+AGG 0.640554 3:-13293917 MsG0380012248.01.T01:CDS
GTACTACTTTGTACACATTG+TGG 0.656666 3:+13293796 None:intergenic
AATCATCGTCATCACTAGCA+GGG 0.659881 3:+13294545 None:intergenic
GCCGTGCAGATCCTAAAAGA+CGG 0.669319 3:+13296798 None:intergenic
TATCACAGTCTTCAACCGGT+AGG 0.674568 3:-13293879 MsG0380012248.01.T01:CDS
AGTCAAGGTGAGGACTCTGG+TGG 0.692733 3:-13294448 MsG0380012248.01.T01:CDS
ACACATTGTGGCACTAACGT+AGG 0.699937 3:+13293808 None:intergenic
ACTATCGAGTCTATTCTTGG+GGG 0.749201 3:-13294388 MsG0380012248.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAATACATAAAACAT+GGG + Chr3:13296967-13296986 None:intergenic 10.0%
!! TAATTATAATACATAAAACA+TGG + Chr3:13296968-13296987 None:intergenic 10.0%
!! AAATTAAACTTGTAAAACTT+CGG + Chr3:13294055-13294074 None:intergenic 15.0%
!! AGTAGAAATTTATTCTTAAT+TGG - Chr3:13297743-13297762 MsG0380012248.01.T01:CDS 15.0%
!! TACTTCATAATTCATAATAT+AGG - Chr3:13296338-13296357 MsG0380012248.01.T01:intron 15.0%
!! TTTGTTCATTTATACTAATT+GGG - Chr3:13296256-13296275 MsG0380012248.01.T01:intron 15.0%
!!! AATTAAATTTAACTTTGTCA+AGG - Chr3:13296983-13297002 MsG0380012248.01.T01:intron 15.0%
!!! TTTTGTTCATTTATACTAAT+TGG - Chr3:13296255-13296274 MsG0380012248.01.T01:intron 15.0%
!! ATACGATTTCAAAAAACTTT+CGG - Chr3:13296430-13296449 MsG0380012248.01.T01:intron 20.0%
!! ATATTAAACGAAGATAACTA+AGG - Chr3:13294820-13294839 MsG0380012248.01.T01:intron 20.0%
!! ATCAAACAAAAAATGACAAA+GGG - Chr3:13298269-13298288 MsG0380012248.01.T01:intron 20.0%
!! ATCAATAAAAATAACTCATG+AGG - Chr3:13297252-13297271 MsG0380012248.01.T01:intron 20.0%
!! CAAAATCAATTATACTTTAG+AGG - Chr3:13293735-13293754 MsG0380012248.01.T01:CDS 20.0%
!! CATTTCAAAAGTTCATAATA+TGG - Chr3:13294124-13294143 MsG0380012248.01.T01:intron 20.0%
!! TAATTATATTCAGCAACATT+TGG + Chr3:13294090-13294109 None:intergenic 20.0%
!! TCAAAATGTGATGTTATTAT+AGG - Chr3:13295067-13295086 MsG0380012248.01.T01:intron 20.0%
!! TCAATAAAAATAACTCATGA+GGG - Chr3:13297253-13297272 MsG0380012248.01.T01:intron 20.0%
!! TGAATATAATTACTTGTGTA+TGG - Chr3:13294098-13294117 MsG0380012248.01.T01:intron 20.0%
!! TGATTGAAATAAGAAAAAAG+AGG + Chr3:13296146-13296165 None:intergenic 20.0%
!! TTAAATATCCCTTATGTTTA+CGG - Chr3:13294027-13294046 MsG0380012248.01.T01:CDS 20.0%
!! TTGTTCATTTATACTAATTG+GGG - Chr3:13296257-13296276 MsG0380012248.01.T01:intron 20.0%
!!! AGTTTTTCTAATTATATGTG+TGG - Chr3:13294784-13294803 MsG0380012248.01.T01:CDS 20.0%
!!! ATGTGGTTTGATAATTTATT+AGG - Chr3:13294616-13294635 MsG0380012248.01.T01:intron 20.0%
!!! ATTCGTTTTCTTTTTTACTA+GGG + Chr3:13293974-13293993 None:intergenic 20.0%
!!! CAATTTTGTAATGAATCTTT+TGG - Chr3:13298385-13298404 MsG0380012248.01.T01:intron 20.0%
!!! CATATTTTTTCTGTATACTT+TGG - Chr3:13296727-13296746 MsG0380012248.01.T01:intron 20.0%
!!! GTTATTTCTTTCAGTTTTTT+TGG - Chr3:13294761-13294780 MsG0380012248.01.T01:CDS 20.0%
!!! TATTATGAACTTTTGAAATG+CGG + Chr3:13294124-13294143 None:intergenic 20.0%
!!! TTTTTGAAATCGTATTTACA+GGG + Chr3:13296425-13296444 None:intergenic 20.0%
!!! TTTTTTGAAATCGTATTTAC+AGG + Chr3:13296426-13296445 None:intergenic 20.0%
! AAAAGTCAATTCATTCTTCA+CGG + Chr3:13298464-13298483 None:intergenic 25.0%
! AAATTGGAAGTTGTTTAATG+TGG - Chr3:13297019-13297038 MsG0380012248.01.T01:intron 25.0%
! AAGTAATATCTGCATAAGAA+TGG + Chr3:13297182-13297201 None:intergenic 25.0%
! ACAGTCAGATAAATAACTAA+GGG + Chr3:13294505-13294524 None:intergenic 25.0%
! ACTTACTAATGTAAATCCAA+AGG - Chr3:13298309-13298328 MsG0380012248.01.T01:intron 25.0%
! AGGTTTCATCATAGTTAAAT+TGG - Chr3:13297003-13297022 MsG0380012248.01.T01:intron 25.0%
! ATCATAGATTTAACCATAAG+AGG - Chr3:13295971-13295990 MsG0380012248.01.T01:intron 25.0%
! ATTTGTGTAGAAATTCGAAA+GGG - Chr3:13294531-13294550 MsG0380012248.01.T01:CDS 25.0%
! GATCAAACAAAAAATGACAA+AGG - Chr3:13298268-13298287 MsG0380012248.01.T01:intron 25.0%
! GATTATGTAAACAAGTGATT+GGG + Chr3:13295954-13295973 None:intergenic 25.0%
! TACAGAAAAAATATGACTCA+AGG + Chr3:13296722-13296741 None:intergenic 25.0%
! TACAGATCTTTGTTGAAATA+GGG - Chr3:13296569-13296588 MsG0380012248.01.T01:intron 25.0%
! TACAGTCAGATAAATAACTA+AGG + Chr3:13294506-13294525 None:intergenic 25.0%
! TCAAACAAAAAATGACAAAG+GGG - Chr3:13298270-13298289 MsG0380012248.01.T01:intron 25.0%
! TCTCACTATTAAATAGTCAT+AGG + Chr3:13296847-13296866 None:intergenic 25.0%
! TGAATTATGAAGTAAAAGAG+AGG + Chr3:13296332-13296351 None:intergenic 25.0%
! TGATAAATGTTTCGTTAACA+TGG - Chr3:13297800-13297819 MsG0380012248.01.T01:intron 25.0%
! TGATTATGTAAACAAGTGAT+TGG + Chr3:13295955-13295974 None:intergenic 25.0%
! TTACAGATCTTTGTTGAAAT+AGG - Chr3:13296568-13296587 MsG0380012248.01.T01:intron 25.0%
! TTTGTGGTTAAAGAAAAAGT+AGG - Chr3:13294888-13294907 MsG0380012248.01.T01:intron 25.0%
!! AAAAGATGAATCTTCTGTTT+TGG + Chr3:13294725-13294744 None:intergenic 25.0%
!! ACTGAATTTGAAACAATTGA+GGG - Chr3:13294263-13294282 MsG0380012248.01.T01:intron 25.0%
!! GTTTGATAATTTATTAGGTG+AGG - Chr3:13294621-13294640 MsG0380012248.01.T01:intron 25.0%
!! TACTGAATTTGAAACAATTG+AGG - Chr3:13294262-13294281 MsG0380012248.01.T01:intron 25.0%
!! TTTTCTAATTATATGTGTGG+AGG - Chr3:13294787-13294806 MsG0380012248.01.T01:CDS 25.0%
!! TTTTGTAATGAATCTTTTGG+TGG - Chr3:13298388-13298407 MsG0380012248.01.T01:intron 25.0%
!!! ATTTTTTACCAGAAAAACTG+AGG + Chr3:13296625-13296644 None:intergenic 25.0%
!!! CATTCGTTTTCTTTTTTACT+AGG + Chr3:13293975-13293994 None:intergenic 25.0%
!!! TCGCAATCTTAGATTTTTTT+TGG - Chr3:13295811-13295830 MsG0380012248.01.T01:intron 25.0%
!!! TGAAGCATTTTACCAAAATT+TGG - Chr3:13296666-13296685 MsG0380012248.01.T01:intron 25.0%
!!! TGATGAAAAGAGGAATTTTT+TGG - Chr3:13295161-13295180 MsG0380012248.01.T01:intron 25.0%
!!! TTTTGAAATCGTATTTACAG+GGG + Chr3:13296424-13296443 None:intergenic 25.0%
AAAAAGGAGAATGAAAGTCA+AGG - Chr3:13297520-13297539 MsG0380012248.01.T01:intron 30.0%
AACATGAGTAAGTGTATGTT+TGG - Chr3:13293534-13293553 MsG0380012248.01.T01:three_prime_UTR 30.0%
AATCCCAATTTGCATTTGAT+AGG + Chr3:13295774-13295793 None:intergenic 30.0%
ACAATGATGTGAAATTGCTT+AGG - Chr3:13294443-13294462 MsG0380012248.01.T01:CDS 30.0%
ACACATTAACTAATGCTGAT+AGG - Chr3:13295369-13295388 MsG0380012248.01.T01:intron 30.0%
AGAAAGCAATAACCAAATGA+AGG + Chr3:13295018-13295037 None:intergenic 30.0%
AGAATGGAAAAACGATCAAT+CGG + Chr3:13297166-13297185 None:intergenic 30.0%
ATAGTCATAGGAAATAGTCA+AGG + Chr3:13296835-13296854 None:intergenic 30.0%
ATCCCAATTTGCATTTGATA+GGG + Chr3:13295773-13295792 None:intergenic 30.0%
ATGATGTATACTACTGAATC+AGG - Chr3:13297399-13297418 MsG0380012248.01.T01:intron 30.0%
ATGTCAAATCGAGAAAACAT+AGG - Chr3:13293992-13294011 MsG0380012248.01.T01:CDS 30.0%
ATGTGATGTTATTATAGGCA+TGG - Chr3:13295072-13295091 MsG0380012248.01.T01:intron 30.0%
ATTATACCGCAATCAAGATA+TGG + Chr3:13296296-13296315 None:intergenic 30.0%
ATTCTCTCCAGTGTTAATTT+GGG - Chr3:13296050-13296069 MsG0380012248.01.T01:intron 30.0%
CAAATCAGTATTTGTATCCT+TGG + Chr3:13297957-13297976 None:intergenic 30.0%
CACATTAACTAATGCTGATA+GGG - Chr3:13295370-13295389 MsG0380012248.01.T01:intron 30.0%
CACTTTCATTTCCCATTAAA+TGG + Chr3:13298249-13298268 None:intergenic 30.0%
CTAAACTCGTAAGTATCATT+TGG + Chr3:13296379-13296398 None:intergenic 30.0%
GAAAATGCAATGATGAAAAG+AGG - Chr3:13295151-13295170 MsG0380012248.01.T01:intron 30.0%
GAAAGCAATAACCAAATGAA+GGG + Chr3:13295017-13295036 None:intergenic 30.0%
GATAATTTATTAGGTGAGGA+GGG - Chr3:13294625-13294644 MsG0380012248.01.T01:intron 30.0%
GATTTGTGTAGAAATTCGAA+AGG - Chr3:13294530-13294549 MsG0380012248.01.T01:CDS 30.0%
GCTAAGTCATTCCATTTAAT+GGG - Chr3:13298235-13298254 MsG0380012248.01.T01:intron 30.0%
GCTTAAAAAAGACTATCCTT+TGG + Chr3:13298328-13298347 None:intergenic 30.0%
GTATACAACAGAGAATTTAG+TGG + Chr3:13297303-13297322 None:intergenic 30.0%
GTTATTTATCTGACTGTAAC+TGG - Chr3:13294508-13294527 MsG0380012248.01.T01:CDS 30.0%
GTTGAAGGTAAAGTTATGTT+TGG - Chr3:13293610-13293629 MsG0380012248.01.T01:three_prime_UTR 30.0%
TAAGTGTATGTTTGGTTATG+CGG - Chr3:13293542-13293561 MsG0380012248.01.T01:three_prime_UTR 30.0%
TAATTCATAATATAGGCACC+AGG - Chr3:13296345-13296364 MsG0380012248.01.T01:intron 30.0%
TCAAGTATAATCCATTCTAG+AGG - Chr3:13293712-13293731 MsG0380012248.01.T01:CDS 30.0%
TCTAGTATAATCCATTCTAG+AGG - Chr3:13293780-13293799 MsG0380012248.01.T01:CDS 30.0%
TCTTGTATACCAATCTTTCA+AGG + Chr3:13294334-13294353 None:intergenic 30.0%
TGACTATGTACAAGTGATTA+TGG - Chr3:13297070-13297089 MsG0380012248.01.T01:intron 30.0%
TGATAATTTATTAGGTGAGG+AGG - Chr3:13294624-13294643 MsG0380012248.01.T01:intron 30.0%
TGTATTTACGAGTCATTATG+TGG - Chr3:13294599-13294618 MsG0380012248.01.T01:intron 30.0%
TTAAACGAAGATAACTAAGG+AGG - Chr3:13294823-13294842 MsG0380012248.01.T01:intron 30.0%
TTTGTTTGCAGATAATAGCT+CGG - Chr3:13294207-13294226 MsG0380012248.01.T01:intron 30.0%
! GCATTTTACCAAAATTTGGT+TGG - Chr3:13296670-13296689 MsG0380012248.01.T01:intron 30.0%
! TCATAGAACCAACCAAATTT+TGG + Chr3:13296681-13296700 None:intergenic 30.0%
! TGATTGCTTCTTTTTAGACA+GGG + Chr3:13297236-13297255 None:intergenic 30.0%
! TTCAGAATCTCACAACTTTT+AGG + Chr3:13296650-13296669 None:intergenic 30.0%
! TTGATTGCTTCTTTTTAGAC+AGG + Chr3:13297237-13297256 None:intergenic 30.0%
!! AATTGATTTTGCCTCTAGAA+TGG + Chr3:13293726-13293745 None:intergenic 30.0%
!! AGAAGATTCATCTTTTAGAG+AGG - Chr3:13294729-13294748 MsG0380012248.01.T01:CDS 30.0%
!! ATAAAATCATCGATTTGCGA+CGG + Chr3:13297989-13298008 None:intergenic 30.0%
!! CATTGTTGATTTGTTCAACA+TGG - Chr3:13297204-13297223 MsG0380012248.01.T01:intron 30.0%
!! GCACATAGAAAATTTTAGCA+CGG + Chr3:13296494-13296513 None:intergenic 30.0%
!! TCTAGCTAAAATTGAGTTGA+AGG - Chr3:13293595-13293614 MsG0380012248.01.T01:three_prime_UTR 30.0%
!!! AATTTTTTGGACCGTCTTTT+AGG - Chr3:13295174-13295193 MsG0380012248.01.T01:intron 30.0%
!!! TAGACCTCTAGAATCATTTT+TGG - Chr3:13293850-13293869 MsG0380012248.01.T01:CDS 30.0%
!!! TTTGCTCGATCCTTTTTTAT+GGG - Chr3:13296878-13296897 MsG0380012248.01.T01:intron 30.0%
AAAACTCCATCTACTTGATG+CGG - Chr3:13295482-13295501 MsG0380012248.01.T01:intron 35.0%
AACAAGTAACAACTTCCCTT+AGG - Chr3:13297700-13297719 MsG0380012248.01.T01:CDS 35.0%
AACCACATGATACTAGTAGA+AGG + Chr3:13296223-13296242 None:intergenic 35.0%
AAGCATGCACTAAATGATAC+TGG + Chr3:13296778-13296797 None:intergenic 35.0%
AATAACTCATGAGGGAATAG+AGG - Chr3:13297261-13297280 MsG0380012248.01.T01:CDS 35.0%
AATCTTTCTGTTCAAGCATC+AGG - Chr3:13297559-13297578 MsG0380012248.01.T01:intron 35.0%
ACAAGTAACAACTTCCCTTA+GGG - Chr3:13297701-13297720 MsG0380012248.01.T01:CDS 35.0%
ACACTATCGAGTCTATTCTT+GGG - Chr3:13297593-13297612 MsG0380012248.01.T01:intron 35.0%
ACTTATAACAGAGATGCAGA+AGG + Chr3:13296549-13296568 None:intergenic 35.0%
AGTCCCTATCAAATGCAAAT+TGG - Chr3:13295767-13295786 MsG0380012248.01.T01:intron 35.0%
ATCCTTCTACTAGTATCATG+TGG - Chr3:13296218-13296237 MsG0380012248.01.T01:intron 35.0%
ATTTGCATTTGATAGGGACT+CGG + Chr3:13295767-13295786 None:intergenic 35.0%
CAATAACGATTCGTCATAAG+AGG - Chr3:13295909-13295928 MsG0380012248.01.T01:intron 35.0%
CACAGAAAGTCCCATAAAAA+AGG + Chr3:13296891-13296910 None:intergenic 35.0%
CTAAGATTGCGATTTATGCA+GGG + Chr3:13295803-13295822 None:intergenic 35.0%
CTAATTGGGGTTTAGTTGAT+TGG - Chr3:13296270-13296289 MsG0380012248.01.T01:intron 35.0%
CTATTTCCAGCATCTTATGA+AGG - Chr3:13294379-13294398 MsG0380012248.01.T01:intron 35.0%
CTCTTATGACGAATCGTTAT+TGG + Chr3:13295911-13295930 None:intergenic 35.0%
CTTCATAAGATGCTGGAAAT+AGG + Chr3:13294381-13294400 None:intergenic 35.0%
GAATGGAAAAACGATCAATC+GGG + Chr3:13297165-13297184 None:intergenic 35.0%
GATTCTCTCCAGTGTTAATT+TGG - Chr3:13296049-13296068 MsG0380012248.01.T01:intron 35.0%
GGCTAAGTCATTCCATTTAA+TGG - Chr3:13298234-13298253 MsG0380012248.01.T01:intron 35.0%
GTACTACTTTGTACACATTG+TGG + Chr3:13298190-13298209 None:intergenic 35.0%
GTCCCTATCAAATGCAAATT+GGG - Chr3:13295768-13295787 MsG0380012248.01.T01:intron 35.0%
TAACAGAAATGAGCACATCA+TGG + Chr3:13297627-13297646 None:intergenic 35.0%
TAATTGGTGCATTGTTCAGT+TGG - Chr3:13297759-13297778 MsG0380012248.01.T01:CDS 35.0%
TACATACCTTCATAAGATGC+TGG + Chr3:13294388-13294407 None:intergenic 35.0%
TATCATTTGGTAAGATCACC+TGG + Chr3:13296366-13296385 None:intergenic 35.0%
TATTTGTATCCTTGGCATGA+GGG + Chr3:13297949-13297968 None:intergenic 35.0%
TGTGTTAACTAGCAATGCTA+AGG - Chr3:13298213-13298232 MsG0380012248.01.T01:intron 35.0%
TGTTTCATGACAGCTTGAAA+AGG - Chr3:13295127-13295146 MsG0380012248.01.T01:intron 35.0%
TTAGATTGCAAGGATTCGAT+GGG - Chr3:13294239-13294258 MsG0380012248.01.T01:intron 35.0%
TTGGTTAGAAATTGTTACCG+TGG - Chr3:13296746-13296765 MsG0380012248.01.T01:intron 35.0%
TTTAGATTGCAAGGATTCGA+TGG - Chr3:13294238-13294257 MsG0380012248.01.T01:intron 35.0%
! AGGAACTTCAGTTTTCATAC+TGG - Chr3:13296595-13296614 MsG0380012248.01.T01:intron 35.0%
! ATACTTTAGAGGAACCAAAC+AGG - Chr3:13293746-13293765 MsG0380012248.01.T01:CDS 35.0%
! GAGAGTTGTCTTGTTAAACA+TGG - Chr3:13297849-13297868 MsG0380012248.01.T01:intron 35.0%
! GATTTTATGGAGACTGTGTT+TGG - Chr3:13298001-13298020 MsG0380012248.01.T01:intron 35.0%
! GTCGCAAATCGATGATTTTA+TGG - Chr3:13297988-13298007 MsG0380012248.01.T01:intron 35.0%
! TACTTTAGAGGAACCAAACA+GGG - Chr3:13293747-13293766 MsG0380012248.01.T01:CDS 35.0%
! TCTAAGATTGCGATTTATGC+AGG + Chr3:13295804-13295823 None:intergenic 35.0%
! TTTCTAACTTGCCCTTCATT+TGG - Chr3:13295003-13295022 MsG0380012248.01.T01:intron 35.0%
!! AAGTAGATGGAGTTTTGATG+TGG + Chr3:13295478-13295497 None:intergenic 35.0%
!! AATGAATCTTTTGGTGGTAC+TGG - Chr3:13298394-13298413 MsG0380012248.01.T01:intron 35.0%
!! GATTCATCTTTTAGAGAGGT+AGG - Chr3:13294733-13294752 MsG0380012248.01.T01:CDS 35.0%
!! TAAAATCATCGATTTGCGAC+GGG + Chr3:13297988-13298007 None:intergenic 35.0%
!! TTTACGTTTGGTTCCACTTT+TGG + Chr3:13293881-13293900 None:intergenic 35.0%
!!! GTTTGCTCGATCCTTTTTTA+TGG - Chr3:13296877-13296896 MsG0380012248.01.T01:intron 35.0%
AAACTCCATCTACTTGATGC+GGG - Chr3:13295483-13295502 MsG0380012248.01.T01:intron 40.0%
AACTAATGCTGATAGGGACT+TGG - Chr3:13295376-13295395 MsG0380012248.01.T01:intron 40.0%
AAGACCCACATCATGTAGTA+TGG + Chr3:13295728-13295747 None:intergenic 40.0%
AATCATCGTCATCACTAGCA+GGG + Chr3:13297441-13297460 None:intergenic 40.0%
AATTGTAAAGTACAGCCGTC+GGG + Chr3:13295571-13295590 None:intergenic 40.0%
ACCAAACGTAAACATGGGAA+AGG - Chr3:13293889-13293908 MsG0380012248.01.T01:CDS 40.0%
ACCTTTCCCATGTTTACGTT+TGG + Chr3:13293893-13293912 None:intergenic 40.0%
ACGTTACATTAGAGTGTGTC+TGG - Chr3:13297461-13297480 MsG0380012248.01.T01:intron 40.0%
ACTAATGCTGATAGGGACTT+GGG - Chr3:13295377-13295396 MsG0380012248.01.T01:intron 40.0%
ACTATCGAGTCTATTCTTGG+GGG - Chr3:13297595-13297614 MsG0380012248.01.T01:intron 40.0%
AGACCCACATCATGTAGTAT+GGG + Chr3:13295727-13295746 None:intergenic 40.0%
AGTCCCACATTGAGTATTAG+AGG - Chr3:13295416-13295435 MsG0380012248.01.T01:intron 40.0%
AGTGGAACCAAACGTAAACA+TGG - Chr3:13293883-13293902 MsG0380012248.01.T01:CDS 40.0%
ATACTACATGATGTGGGTCT+TGG - Chr3:13295727-13295746 MsG0380012248.01.T01:intron 40.0%
ATAGGGACTTGGGAATTATG+GGG + Chr3:13295518-13295537 None:intergenic 40.0%
ATAGGGACTTGGGTATTATG+GGG - Chr3:13295387-13295406 MsG0380012248.01.T01:intron 40.0%
ATCATGTAGTATGGGATGCT+TGG + Chr3:13295719-13295738 None:intergenic 40.0%
ATGCATAGAGCATGACTATG+AGG - Chr3:13295341-13295360 MsG0380012248.01.T01:intron 40.0%
ATTAGGTGAGGAGGGATTTA+AGG - Chr3:13294633-13294652 MsG0380012248.01.T01:intron 40.0%
ATTTGTATCCTTGGCATGAG+GGG + Chr3:13297948-13297967 None:intergenic 40.0%
CACCCTCTAATACTCAATGT+GGG + Chr3:13295422-13295441 None:intergenic 40.0%
CACTATCGAGTCTATTCTTG+GGG - Chr3:13297594-13297613 MsG0380012248.01.T01:intron 40.0%
CATCCCATACTACATGATGT+GGG - Chr3:13295721-13295740 MsG0380012248.01.T01:intron 40.0%
CCACAAACATGTAAGACACT+CGG + Chr3:13294875-13294894 None:intergenic 40.0%
CTATCAGAAAGGACTACCAA+CGG + Chr3:13295622-13295641 None:intergenic 40.0%
GAATTGTAAAGTACAGCCGT+CGG + Chr3:13295572-13295591 None:intergenic 40.0%
GACACTATCGAGTCTATTCT+TGG - Chr3:13297592-13297611 MsG0380012248.01.T01:intron 40.0%
GATAGGGACTTGGGAATTAT+GGG + Chr3:13295519-13295538 None:intergenic 40.0%
GATAGGGACTTGGGTATTAT+GGG - Chr3:13295386-13295405 MsG0380012248.01.T01:intron 40.0%
GCATTATCACAGTCTTCAAC+CGG - Chr3:13298100-13298119 MsG0380012248.01.T01:intron 40.0%
GCTGTTGGATTTAGATTGCA+AGG - Chr3:13294229-13294248 MsG0380012248.01.T01:intron 40.0%
GGAGCCAAAAATGATTCTAG+AGG + Chr3:13293857-13293876 None:intergenic 40.0%
GGGACTTTCTGTGACAATTA+TGG - Chr3:13296898-13296917 MsG0380012248.01.T01:intron 40.0%
GTATTTGTATCCTTGGCATG+AGG + Chr3:13297950-13297969 None:intergenic 40.0%
GTCCCACATTGAGTATTAGA+GGG - Chr3:13295417-13295436 MsG0380012248.01.T01:intron 40.0%
GTGGAACCAAACGTAAACAT+GGG - Chr3:13293884-13293903 MsG0380012248.01.T01:CDS 40.0%
TAATCATCGTCATCACTAGC+AGG + Chr3:13297442-13297461 None:intergenic 40.0%
TCATTAACCACTTGGGATCT+AGG - Chr3:13295997-13296016 MsG0380012248.01.T01:intron 40.0%
TCTTTGTTGAAATAGGGAGC+AGG - Chr3:13296575-13296594 MsG0380012248.01.T01:intron 40.0%
TGATAGGGACTTGGGAATTA+TGG + Chr3:13295520-13295539 None:intergenic 40.0%
TGATAGGGACTTGGGTATTA+TGG - Chr3:13295385-13295404 MsG0380012248.01.T01:intron 40.0%
TGCTTGGATACCTATCAGAA+AGG + Chr3:13295633-13295652 None:intergenic 40.0%
TGGTTAATGAGCTCCTCTTA+TGG + Chr3:13295925-13295944 None:intergenic 40.0%
TTTGCATTTGATAGGGACTC+GGG + Chr3:13295766-13295785 None:intergenic 40.0%
! ATTGGTTCAACCATCTGCAT+GGG + Chr3:13296181-13296200 None:intergenic 40.0%
! CTGGATAACCTCAGTTTTTC+TGG - Chr3:13296614-13296633 MsG0380012248.01.T01:intron 40.0%
! GATTGGCCATATCTTGATTG+CGG - Chr3:13296287-13296306 MsG0380012248.01.T01:intron 40.0%
! TCTCCAGTGTTAATTTGGGT+GGG - Chr3:13296054-13296073 MsG0380012248.01.T01:intron 40.0%
! TGCTTGGTGGAGTATTTAAG+TGG + Chr3:13295703-13295722 None:intergenic 40.0%
!! AAAGGTATTTGATGAGGCGA+GGG - Chr3:13293907-13293926 MsG0380012248.01.T01:CDS 40.0%
!! AGGGAATAGAGGTTAGTTTG+TGG - Chr3:13297272-13297291 MsG0380012248.01.T01:CDS 40.0%
!! CATGGGAAAGGTATTTGATG+AGG - Chr3:13293901-13293920 MsG0380012248.01.T01:CDS 40.0%
!! GGGAATAGAGGTTAGTTTGT+GGG - Chr3:13297273-13297292 MsG0380012248.01.T01:CDS 40.0%
!!! ATTTTTGGCTCCTCCAAAAG+TGG - Chr3:13293865-13293884 MsG0380012248.01.T01:CDS 40.0%
AACAAGTGATTGGGCTCAAG+TGG + Chr3:13295945-13295964 None:intergenic 45.0%
AATGATACTGGAGCTGACCA+CGG + Chr3:13296766-13296785 None:intergenic 45.0%
AATGTGGTACACTGATGCTG+AGG - Chr3:13297035-13297054 MsG0380012248.01.T01:intron 45.0%
ACACATTGTGGCACTAACGT+AGG + Chr3:13298178-13298197 None:intergenic 45.0%
ACCAGAATGGAGTTTCCTAC+CGG + Chr3:13298122-13298141 None:intergenic 45.0%
ACTTCGGCACCGTAAACATA+AGG + Chr3:13294039-13294058 None:intergenic 45.0%
AGAGAGTGAGCATTTCTCAG+AGG + Chr3:13294956-13294975 None:intergenic 45.0%
AGAGGAGCTCATTAACCACT+TGG - Chr3:13295927-13295946 MsG0380012248.01.T01:intron 45.0%
AGAGTTGAGTTTGCCCTGTT+TGG + Chr3:13293763-13293782 None:intergenic 45.0%
ATAGGGACTCGGGTATTATG+TGG + Chr3:13295756-13295775 None:intergenic 45.0%
ATGTAGTATGGGATGCTTGG+TGG + Chr3:13295716-13295735 None:intergenic 45.0%
CCGAGTGTCTTACATGTTTG+TGG - Chr3:13294872-13294891 MsG0380012248.01.T01:intron 45.0%
CTCCATGAATCTTCACCAGA+GGG - Chr3:13298067-13298086 MsG0380012248.01.T01:intron 45.0%
CTTCGGCACCGTAAACATAA+GGG + Chr3:13294038-13294057 None:intergenic 45.0%
GAGGAGCTCATTAACCACTT+GGG - Chr3:13295928-13295947 MsG0380012248.01.T01:intron 45.0%
GATGCTGGAAATAGGAACAG+CGG + Chr3:13294373-13294392 None:intergenic 45.0%
GATGGTTGAACCAATGCTGA+AGG - Chr3:13296186-13296205 MsG0380012248.01.T01:intron 45.0%
GCACCCTCTAATACTCAATG+TGG + Chr3:13295423-13295442 None:intergenic 45.0%
GCATCCCATACTACATGATG+TGG - Chr3:13295720-13295739 MsG0380012248.01.T01:intron 45.0%
GGAGAATGAAAGTCAAGGTG+AGG - Chr3:13297525-13297544 MsG0380012248.01.T01:intron 45.0%
GTGTGGCATCCTTGAAAGAT+TGG - Chr3:13294322-13294341 MsG0380012248.01.T01:intron 45.0%
TAGCCCACCCAAATTAACAC+TGG + Chr3:13296060-13296079 None:intergenic 45.0%
TATCACAGTCTTCAACCGGT+AGG - Chr3:13298104-13298123 MsG0380012248.01.T01:intron 45.0%
TCATTGTGTTTCGACTGTGC+TGG - Chr3:13295295-13295314 MsG0380012248.01.T01:intron 45.0%
TCTCCATGAATCTTCACCAG+AGG - Chr3:13298066-13298085 MsG0380012248.01.T01:intron 45.0%
TGGTGAAGATTCATGGAGAG+AGG + Chr3:13298065-13298084 None:intergenic 45.0%
TGTTAACCCTCCCGTACATA+GGG - Chr3:13295834-13295853 MsG0380012248.01.T01:intron 45.0%
TTTGTATCCTTGGCATGAGG+GGG + Chr3:13297947-13297966 None:intergenic 45.0%
! AAGGTATTTGATGAGGCGAG+GGG - Chr3:13293908-13293927 MsG0380012248.01.T01:CDS 45.0%
! ACTTTTTATCCAGCGCCCTA+AGG + Chr3:13297719-13297738 None:intergenic 45.0%
! CCTCGATAGCTAGCTTCAAA+GGG + Chr3:13295667-13295686 None:intergenic 45.0%
! CTCTCCAGTGTTAATTTGGG+TGG - Chr3:13296053-13296072 MsG0380012248.01.T01:intron 45.0%
! CTTTTTATCCAGCGCCCTAA+GGG + Chr3:13297718-13297737 None:intergenic 45.0%
! GGATTTAAGGCTTCTGCAGT+TGG - Chr3:13294646-13294665 MsG0380012248.01.T01:intron 45.0%
! GTTCTGTTTTCCCATGCAGA+TGG - Chr3:13296168-13296187 MsG0380012248.01.T01:intron 45.0%
! TGGTTCTGTGATAGGGACTT+GGG + Chr3:13295528-13295547 None:intergenic 45.0%
! TTTGAAGCTAGCTATCGAGG+GGG - Chr3:13295667-13295686 MsG0380012248.01.T01:intron 45.0%
!! ACGTTTGGTTCCACTTTTGG+AGG + Chr3:13293878-13293897 None:intergenic 45.0%
!! ACTCCATTCTGGTTCGAAGA+AGG - Chr3:13298129-13298148 MsG0380012248.01.T01:intron 45.0%
!! ACTGTGTTTGGTAGTGAGGA+AGG - Chr3:13298013-13298032 MsG0380012248.01.T01:intron 45.0%
!! CATTGGTTCAACCATCTGCA+TGG + Chr3:13296182-13296201 None:intergenic 45.0%
!! CCTTTGAAGCTAGCTATCGA+GGG - Chr3:13295665-13295684 MsG0380012248.01.T01:intron 45.0%
!! CGTTGGTAGTCCTTTCTGAT+AGG - Chr3:13295620-13295639 MsG0380012248.01.T01:intron 45.0%
!! CTTTGAAGCTAGCTATCGAG+GGG - Chr3:13295666-13295685 MsG0380012248.01.T01:intron 45.0%
!! GAAAGGTATTTGATGAGGCG+AGG - Chr3:13293906-13293925 MsG0380012248.01.T01:CDS 45.0%
!! TTTGGTGGTACTGGTACAGT+AGG - Chr3:13298403-13298422 MsG0380012248.01.T01:intron 45.0%
!!! ACCGTCTTTTAGGATCTGCA+CGG - Chr3:13295184-13295203 MsG0380012248.01.T01:intron 45.0%
AACGGAGGGGATGACTAGAA+AGG + Chr3:13295604-13295623 None:intergenic 50.0%
AATGCATGCAAGTCACCCTC+TGG + Chr3:13298085-13298104 None:intergenic 50.0%
ACCGGTAGGAAACTCCATTC+TGG - Chr3:13298118-13298137 MsG0380012248.01.T01:intron 50.0%
ACTAGGGACGACAATGAGTC+AGG + Chr3:13293958-13293977 None:intergenic 50.0%
AGAAAGGACTACCAACGGAG+GGG + Chr3:13295617-13295636 None:intergenic 50.0%
AGCCGAACTCCGCATTACTA+GGG + Chr3:13295868-13295887 None:intergenic 50.0%
AGCTGATGCTGCAGCTAAAG+AGG - Chr3:13297919-13297938 MsG0380012248.01.T01:intron 50.0%
AGGGGATGACTAGAAAGGTC+AGG + Chr3:13295599-13295618 None:intergenic 50.0%
ATCTGCACGGCTACTAGAAG+AGG - Chr3:13295197-13295216 MsG0380012248.01.T01:intron 50.0%
CAAGGATGCCACACTCACAT+TGG + Chr3:13294316-13294335 None:intergenic 50.0%
CAAGTCCCGCATCAAGTAGA+TGG + Chr3:13295491-13295510 None:intergenic 50.0%
CACCCTCTGGTGAAGATTCA+TGG + Chr3:13298072-13298091 None:intergenic 50.0%
CAGAAAGGACTACCAACGGA+GGG + Chr3:13295618-13295637 None:intergenic 50.0%
CATCAGCTTCACCTGTTTCC+GGG + Chr3:13297907-13297926 None:intergenic 50.0%
CCACCTTCTTCGAACCAGAA+TGG + Chr3:13298135-13298154 None:intergenic 50.0%
GAAAGTCAAGGTGAGGACTC+TGG - Chr3:13297532-13297551 MsG0380012248.01.T01:intron 50.0%
GAATCGAACATGAGACCTCG+AGG + Chr3:13296034-13296053 None:intergenic 50.0%
GCAGATAATAGCTCGGCTGT+TGG - Chr3:13294214-13294233 MsG0380012248.01.T01:intron 50.0%
GCATCAGCTTCACCTGTTTC+CGG + Chr3:13297908-13297927 None:intergenic 50.0%
GCCGTGCAGATCCTAAAAGA+CGG + Chr3:13295188-13295207 None:intergenic 50.0%
GCTGGCAGGTAAGTAAAGTC+TGG - Chr3:13295885-13295904 MsG0380012248.01.T01:intron 50.0%
GCTTCTGCAGTTGGCAAACT+TGG - Chr3:13294655-13294674 MsG0380012248.01.T01:intron 50.0%
GGACGACAATGAGTCAGGAT+GGG + Chr3:13293953-13293972 None:intergenic 50.0%
GTGTTAACCCTCCCGTACAT+AGG - Chr3:13295833-13295852 MsG0380012248.01.T01:intron 50.0%
GTTAACCCTCCCGTACATAG+GGG - Chr3:13295835-13295854 MsG0380012248.01.T01:intron 50.0%
TACGTTGCAGCCTTCAGCAT+TGG + Chr3:13296199-13296218 None:intergenic 50.0%
TATCACAGAACCACCTCGGA+AGG - Chr3:13295535-13295554 MsG0380012248.01.T01:intron 50.0%
TCACAGCTCCAATGTGAGTG+TGG - Chr3:13294305-13294324 MsG0380012248.01.T01:intron 50.0%
TCAGAAAGGACTACCAACGG+AGG + Chr3:13295619-13295638 None:intergenic 50.0%
TCCCTATCACAGAACCACCT+CGG - Chr3:13295531-13295550 MsG0380012248.01.T01:intron 50.0%
TCTGCAGTTGGCAAACTTGG+AGG - Chr3:13294658-13294677 MsG0380012248.01.T01:intron 50.0%
TGCAGATGACCAACATGACC+CGG - Chr3:13297886-13297905 MsG0380012248.01.T01:intron 50.0%
! CCCTCGATAGCTAGCTTCAA+AGG + Chr3:13295668-13295687 None:intergenic 50.0%
! CGATAGCTAGCTTCAAAGGG+AGG + Chr3:13295664-13295683 None:intergenic 50.0%
! GCTAGCACGTCTACGAGTTT+TGG - Chr3:13296925-13296944 MsG0380012248.01.T01:intron 50.0%
! GTGGTTCTGTGATAGGGACT+TGG + Chr3:13295529-13295548 None:intergenic 50.0%
! TCCGAGGTGGTTCTGTGATA+GGG + Chr3:13295535-13295554 None:intergenic 50.0%
! TTCCGAGGTGGTTCTGTGAT+AGG + Chr3:13295536-13295555 None:intergenic 50.0%
! TTTCTAGTCATCCCCTCCGT+TGG - Chr3:13295603-13295622 MsG0380012248.01.T01:intron 50.0%
!! CCATTCTGGTTCGAAGAAGG+TGG - Chr3:13298132-13298151 MsG0380012248.01.T01:intron 50.0%
!! CCCTTTGAAGCTAGCTATCG+AGG - Chr3:13295664-13295683 MsG0380012248.01.T01:intron 50.0%
!! GGAGACTGTGTTTGGTAGTG+AGG - Chr3:13298009-13298028 MsG0380012248.01.T01:intron 50.0%
!! GTGTTTGGTAGTGAGGAAGG+AGG - Chr3:13298016-13298035 MsG0380012248.01.T01:intron 50.0%
AACAACTTCCCTTAGGGCGC+TGG - Chr3:13297707-13297726 MsG0380012248.01.T01:CDS 55.0%
AGTCAAGGTGAGGACTCTGG+TGG - Chr3:13297535-13297554 MsG0380012248.01.T01:intron 55.0%
CACCTGTTTCCGGGTCATGT+TGG + Chr3:13297898-13297917 None:intergenic 55.0%
CAGCCGAACTCCGCATTACT+AGG + Chr3:13295869-13295888 None:intergenic 55.0%
CTAGTAATGCGGAGTTCGGC+TGG - Chr3:13295867-13295886 MsG0380012248.01.T01:intron 55.0%
CTCGACAGCTCAAGCGTTTG+GGG - Chr3:13295442-13295461 MsG0380012248.01.T01:intron 55.0%
GACCAACATGACCCGGAAAC+AGG - Chr3:13297893-13297912 MsG0380012248.01.T01:intron 55.0%
GCACACTCCTAGATCCCAAG+TGG + Chr3:13296007-13296026 None:intergenic 55.0%
GCCCCTAGTAATGCGGAGTT+CGG - Chr3:13295863-13295882 MsG0380012248.01.T01:intron 55.0%
GCCGAACTCCGCATTACTAG+GGG + Chr3:13295867-13295886 None:intergenic 55.0%
GCTCGACAGCTCAAGCGTTT+GGG - Chr3:13295441-13295460 MsG0380012248.01.T01:intron 55.0%
GCTGGAAATAGGAACAGCGG+CGG + Chr3:13294370-13294389 None:intergenic 55.0%
GGGACGACAATGAGTCAGGA+TGG + Chr3:13293954-13293973 None:intergenic 55.0%
TCGAACATGAGACCTCGAGG+AGG + Chr3:13296031-13296050 None:intergenic 55.0%
TGCTCGACAGCTCAAGCGTT+TGG - Chr3:13295440-13295459 MsG0380012248.01.T01:intron 55.0%
! AAGGGAGGTCTCGAAGTGCT+TGG + Chr3:13295649-13295668 None:intergenic 55.0%
AATAGGAACAGCGGCGGTGC+TGG + Chr3:13294364-13294383 None:intergenic 60.0%
ACCCTCCCGTACATAGGGGA+AGG - Chr3:13295839-13295858 MsG0380012248.01.T01:intron 60.0%
AGAGGATCCCCCTCATGCCA+AGG - Chr3:13297937-13297956 MsG0380012248.01.T01:intron 60.0%
CCCTCCCGTACATAGGGGAA+GGG - Chr3:13295840-13295859 MsG0380012248.01.T01:intron 60.0%
CCCTTCCCCTATGTACGGGA+GGG + Chr3:13295843-13295862 None:intergenic 60.0%
CCTCCCGTACATAGGGGAAG+GGG - Chr3:13295841-13295860 MsG0380012248.01.T01:intron 60.0%
GGAAGGGGCCCCTAGTAATG+CGG - Chr3:13295856-13295875 MsG0380012248.01.T01:intron 60.0%
TAATGCGGAGTTCGGCTGGC+AGG - Chr3:13295871-13295890 MsG0380012248.01.T01:intron 60.0%
TACAGCCGTCGGGACGACAT+CGG + Chr3:13295561-13295580 None:intergenic 60.0%
! TAGGAGTGTGCTCCTCCTCG+AGG - Chr3:13296016-13296035 MsG0380012248.01.T01:intron 60.0%
ACGACATCGGCCTTCCGAGG+TGG + Chr3:13295548-13295567 None:intergenic 65.0%
CCCCTTCCCCTATGTACGGG+AGG + Chr3:13295844-13295863 None:intergenic 65.0%
GAAGGCCGATGTCGTCCCGA+CGG - Chr3:13295553-13295572 MsG0380012248.01.T01:intron 65.0%
GGGCCCCTTCCCCTATGTAC+GGG + Chr3:13295847-13295866 None:intergenic 65.0%
GGGGCCCCTTCCCCTATGTA+CGG + Chr3:13295848-13295867 None:intergenic 65.0%
GGGACGACATCGGCCTTCCG+AGG + Chr3:13295551-13295570 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 13293513 13298492 13293513 ID=MsG0380012248.01;Name=MsG0380012248.01
Chr3 mRNA 13293513 13298492 13293513 ID=MsG0380012248.01.T01;Parent=MsG0380012248.01;Name=MsG0380012248.01.T01;_AED=0.40;_eAED=0.42;_QI=0|0.5|0.71|1|1|1|7|147|369
Chr3 exon 13293513 13294114 13293513 ID=MsG0380012248.01.T01:exon:21249;Parent=MsG0380012248.01.T01
Chr3 exon 13294389 13294584 13294389 ID=MsG0380012248.01.T01:exon:21248;Parent=MsG0380012248.01.T01
Chr3 exon 13294723 13294812 13294723 ID=MsG0380012248.01.T01:exon:21247;Parent=MsG0380012248.01.T01
Chr3 exon 13296787 13296865 13296787 ID=MsG0380012248.01.T01:exon:21246;Parent=MsG0380012248.01.T01
Chr3 exon 13297255 13297367 13297255 ID=MsG0380012248.01.T01:exon:21245;Parent=MsG0380012248.01.T01
Chr3 exon 13297662 13297787 13297662 ID=MsG0380012248.01.T01:exon:21244;Parent=MsG0380012248.01.T01
Chr3 exon 13298442 13298492 13298442 ID=MsG0380012248.01.T01:exon:21243;Parent=MsG0380012248.01.T01
Chr3 CDS 13298442 13298492 13298442 ID=MsG0380012248.01.T01:cds;Parent=MsG0380012248.01.T01
Chr3 CDS 13297662 13297787 13297662 ID=MsG0380012248.01.T01:cds;Parent=MsG0380012248.01.T01
Chr3 CDS 13297255 13297367 13297255 ID=MsG0380012248.01.T01:cds;Parent=MsG0380012248.01.T01
Chr3 CDS 13296787 13296865 13296787 ID=MsG0380012248.01.T01:cds;Parent=MsG0380012248.01.T01
Chr3 CDS 13294723 13294812 13294723 ID=MsG0380012248.01.T01:cds;Parent=MsG0380012248.01.T01
Chr3 CDS 13294389 13294584 13294389 ID=MsG0380012248.01.T01:cds;Parent=MsG0380012248.01.T01
Chr3 CDS 13293660 13294114 13293660 ID=MsG0380012248.01.T01:cds;Parent=MsG0380012248.01.T01
Chr3 three_prime_UTR 13293513 13293659 13293513 ID=MsG0380012248.01.T01:three_prime_utr;Parent=MsG0380012248.01.T01
Gene Sequence

>MsG0380012248.01.T01

ATGCTCATCAAATCTGTTTTAAACATGAGTAAGTGTATGTTTGGTTATGCGATAATAGCTCGGCTGTTGGATTTAGATTGCAAGGATTCGATGGGTACTGAATTTGAAACAATTGAGGGTCGAATAACATCTATGCTTTCACAGCTCCAATGTGAGTGTGGCATCCTTGAAAGATTGGTGAGGAGGGATTTAAGGCTTCTGCAGTTGGCAAACTTGGAGGAGCTTGTAAGATCATGTTTCTCTGTTATCAAAGAAGATAGACCAAAACAGAAGATTCATCTTTTAGAGAGCTTGAAAAGGAGAAAATGCAATGATGAAAAGAGGAATTTTTTGGACCGTCTTTTAGGATCTGCACGGCTACTAGAAGAGATATTACTTGACATTGTTGATTTGTTCAACATGGTTTCTTCCCTGTCTAAAAAGAAGCAATCAATAAAAATAACTCATGAGGGAATAGAGGTTTTTAGAGAATTCTACCCTGCTAGTGATGACGATGATTACGTTACATTAGAGTGTGTCTGGAAATCAGATAAGTATATATTACTTGAGAGGAAGCATAAAAAGGAGAATGAAAGTCAAGGTGAGGACTCTGGTGGAAATCTTTCTGTTCAAGCATCAGGTGTAAACTATGACACTATCGAGTCTATTCTTGGGGATGACCAACATGACCCGGAAACAGGTGAAGCTGATGCTGCAGCTAAAGAGGATCCCCCTCATGCCAAGGATACAAATACTGATTTGTTGACAATCCCGTCGCAAATCGATGATTTTATGGAGACTGTGTTTGGTAGTGAGGAAGGAGGAGAAAATCTTTCTACGACAAAAGCCTCTCTCCATGAATCTTCACCAGAGGGTGACTTGCATGCATTATCACAGTCTTCAACCGGTAGGAAACTCCATTCTGGTTCGAAGAAGGTGGCATTTCTGTCGATAAAGAATCCTACGTTAGTGCCACAATGTGTACAAAGTAGTACTTCTGTGTTAACTAGCAATGCTAAGGCTAAGTCATTCCATTTAATGGGAAATGAAAGTGATCAAACAAAAAATGACAAAGGGGATTCACTTGCTAGTATACTTACTAATGTAAATCCAAAGGATAGTCTTTTTTAA
Protein sequence

>MsG0380012248.01.T01

MLIKSVLNMSKCMFGYAIIARLLDLDCKDSMGTEFETIEGRITSMLSQLQCECGILERLVRRDLRLLQLANLEELVRSCFSVIKEDRPKQKIHLLESLKRRKCNDEKRNFLDRLLGSARLLEEILLDIVDLFNMVSSLSKKKQSIKITHEGIEVFREFYPASDDDDYVTLECVWKSDKYILLERKHKKENESQGEDSGGNLSVQASGVNYDTIESILGDDQHDPETGEADAAAKEDPPHAKDTNTDLLTIPSQIDDFMETVFGSEEGGENLSTTKASLHESSPEGDLHALSQSSTGRKLHSGSKKVAFLSIKNPTLVPQCVQSSTSVLTSNAKAKSFHLMGNESDQTKNDKGDSLASILTNVNPKDSLF*