AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008928.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008928.01.T01 MTR_0380s0040 90.984 122 3 1 20 141 75 188 8.90e-74 218
MsG0280008928.01.T01 MTR_4g130730 79.817 109 14 1 21 129 80 180 1.70e-56 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008928.01.T01 AT2G24020 79.508 122 17 1 20 141 69 182 7.09e-65 196
MsG0280008928.01.T01 AT2G24020 79.508 122 17 1 20 141 67 180 7.58e-65 196
MsG0280008928.01.T01 AT4G30620 80.328 122 15 2 20 141 68 180 1.54e-64 195

Find 55 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACGCTGCAAGTTCTTTC+TGG 0.145791 2:+41674597 None:intergenic
GACAATGGGTGACTACATTA+AGG 0.285149 2:+41675016 None:intergenic
ACTTCCCTTGATGAAGGATT+AGG 0.298204 2:-41670476 MsG0280008928.01.T01:three_prime_UTR
GATTAGGGATCCAGTTTATA+TGG 0.307417 2:-41670460 MsG0280008928.01.T01:three_prime_UTR
TACTGAGGCAGCTATGGAAT+TGG 0.347324 2:-41673248 MsG0280008928.01.T01:CDS
CTTCCCTTGATGAAGGATTA+GGG 0.357597 2:-41670475 MsG0280008928.01.T01:three_prime_UTR
TTTCTGTTCGTAAAGGTTGC+TGG 0.377077 2:+41673272 None:intergenic
TCTTGAAACCCTATACAAAA+AGG 0.382600 2:+41670498 None:intergenic
CCTTCTTCACAGTCTCAAAC+AGG 0.391152 2:+41674654 None:intergenic
TAATGCAGGGCTGAGTTTGA+TGG 0.413015 2:-41673714 MsG0280008928.01.T01:intron
TAGCCTGGAGTTATTTGAAA+TGG 0.420795 2:-41670651 MsG0280008928.01.T01:three_prime_UTR
GATTCTTAGGTAACTCTGTC+TGG 0.421055 2:-41673298 MsG0280008928.01.T01:intron
TTAGGAATGCCACCTGGGCT+TGG 0.431567 2:-41670797 MsG0280008928.01.T01:CDS
ATGGTAGAAGAAAATTATAT+AGG 0.442542 2:-41670441 MsG0280008928.01.T01:three_prime_UTR
ATTGGAGGAATGTGATGAAA+TGG 0.442879 2:-41670579 MsG0280008928.01.T01:three_prime_UTR
AGAAATTACTGAGGCAGCTA+TGG 0.451947 2:-41673254 MsG0280008928.01.T01:CDS
TTCAAGACTTCCCTTGATGA+AGG 0.465373 2:-41670482 MsG0280008928.01.T01:three_prime_UTR
GGACCCTCACTGCTTCAACT+TGG 0.468386 2:+41674618 None:intergenic
TGTTTACCTGGACACTCCTC+TGG 0.470922 2:+41671023 None:intergenic
ACTGAGGCAGCTATGGAATT+GGG 0.474312 2:-41673247 MsG0280008928.01.T01:CDS
TCAGTAATTTCTGTTCGTAA+AGG 0.476342 2:+41673265 None:intergenic
AATGATCTTGCACAGAGCTT+AGG 0.476442 2:-41670815 MsG0280008928.01.T01:CDS
GTTATTAGGGTATGAAGGAA+AGG 0.486941 2:-41670841 MsG0280008928.01.T01:intron
CAGAGCTTAGGAATGCCACC+TGG 0.499553 2:-41670803 MsG0280008928.01.T01:CDS
CCTGTTTGAGACTGTGAAGA+AGG 0.505008 2:-41674654 MsG0280008928.01.T01:CDS
GCACAATATGCCTGATGGAT+AGG 0.509394 2:-41670709 MsG0280008928.01.T01:three_prime_UTR
TCACCATTTCAAATAACTCC+AGG 0.510062 2:+41670648 None:intergenic
ACAATGGGTGACTACATTAA+GGG 0.513581 2:+41675017 None:intergenic
GTGTGCTTCCGTGTAAGCTT+CGG 0.514789 2:+41671045 None:intergenic
GACTGTGAAGAAGGCACAAA+TGG 0.516544 2:-41674645 MsG0280008928.01.T01:CDS
TTTAATCACCGAAGCTTACA+CGG 0.522007 2:-41671053 MsG0280008928.01.T01:CDS
CAGAAAGAACTTGCAGCGTA+TGG 0.528190 2:-41674596 MsG0280008928.01.T01:intron
GAGTTTGATGGTTATTGTGA+GGG 0.531238 2:-41673702 MsG0280008928.01.T01:CDS
AGAATGTAAGCCTATCCATC+AGG 0.535165 2:+41670699 None:intergenic
TTGTGAGGGTGAGTTAGTAA+AGG 0.541197 2:-41673688 MsG0280008928.01.T01:intron
GGATCCCTAATCCTTCATCA+AGG 0.545228 2:+41670471 None:intergenic
AGCACACCAGAGGAGTGTCC+AGG 0.545501 2:-41671029 MsG0280008928.01.T01:intron
ATGCCACCTGGGCTTGGTGA+AGG 0.545656 2:-41670791 MsG0280008928.01.T01:CDS
TTCAATCCTTCACCAAGCCC+AGG 0.572019 2:+41670785 None:intergenic
TGAGTTTGATGGTTATTGTG+AGG 0.595232 2:-41673703 MsG0280008928.01.T01:CDS
TGTCCAAGTTGAAGCAGTGA+GGG 0.597153 2:-41674621 MsG0280008928.01.T01:CDS
ACAGAGATTGCGACATGACA+CGG 0.598848 2:-41670747 MsG0280008928.01.T01:three_prime_UTR
GAATAGATTGAAATGTGATG+AGG 0.599454 2:-41670552 MsG0280008928.01.T01:three_prime_UTR
TGCATGCACAATATGCCTGA+TGG 0.601078 2:-41670714 MsG0280008928.01.T01:three_prime_UTR
GGAGTTATTTGAAATGGTGA+AGG 0.606779 2:-41670645 MsG0280008928.01.T01:three_prime_UTR
ATATTGTGCATGCAATATTG+AGG 0.614349 2:+41670723 None:intergenic
GATCCCTAATCCTTCATCAA+GGG 0.616959 2:+41670472 None:intergenic
AGAGCTTAGGAATGCCACCT+GGG 0.625231 2:-41670802 MsG0280008928.01.T01:CDS
TGACTACATTAAGGGACGGA+GGG 0.659570 2:+41675025 None:intergenic
TTGTCCAAGTTGAAGCAGTG+AGG 0.664199 2:-41674622 MsG0280008928.01.T01:CDS
AATCCTTCACCAAGCCCAGG+TGG 0.668188 2:+41670788 None:intergenic
TGGGTGACTACATTAAGGGA+CGG 0.673551 2:+41675021 None:intergenic
GTGACTACATTAAGGGACGG+AGG 0.689360 2:+41675024 None:intergenic
TTTACGAACAGAAATTACTG+AGG 0.691356 2:-41673263 MsG0280008928.01.T01:CDS
CTTACACGGAAGCACACCAG+AGG 0.719382 2:-41671039 MsG0280008928.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAAATAAAAATATGAAT+AGG - Chr2:41670978-41670997 MsG0280008928.01.T01:intron 10.0%
!! AGTAAATAAAAATATGAATA+GGG - Chr2:41670979-41670998 MsG0280008928.01.T01:intron 10.0%
!! TATAAATATATAATATGACA+GGG + Chr2:41672293-41672312 None:intergenic 10.0%
!!! AAATTTTGAATTTTTATAAG+AGG - Chr2:41673708-41673727 MsG0280008928.01.T01:CDS 10.0%
!!! AATTTTGAATTTTTATAAGA+GGG - Chr2:41673709-41673728 MsG0280008928.01.T01:CDS 10.0%
!!! CTTATAAAAATTCAAAATTT+TGG + Chr2:41673708-41673727 None:intergenic 10.0%
!!! TTTACATTTTAAAGTTAAAA+GGG - Chr2:41671877-41671896 MsG0280008928.01.T01:intron 10.0%
!!! TTTTACATTTTAAAGTTAAA+AGG - Chr2:41671876-41671895 MsG0280008928.01.T01:intron 10.0%
!! AATAATAGACTATTTAAACT+TGG + Chr2:41674138-41674157 None:intergenic 15.0%
!! ATATGTTAATTGAATGAAAT+AGG - Chr2:41671149-41671168 MsG0280008928.01.T01:intron 15.0%
!! CTATAAATATATAATATGAC+AGG + Chr2:41672294-41672313 None:intergenic 15.0%
!! TATAATAATGTATGATTCTT+AGG - Chr2:41672147-41672166 MsG0280008928.01.T01:intron 15.0%
!! TATGTTAATTGAATGAAATA+GGG - Chr2:41671150-41671169 MsG0280008928.01.T01:intron 15.0%
!!! ATAAATTTAATTTGCTTTTG+TGG - Chr2:41674530-41674549 MsG0280008928.01.T01:intron 15.0%
!!! ATCAATATTAGTCTAATAAT+TGG - Chr2:41672096-41672115 MsG0280008928.01.T01:intron 15.0%
!!! TTACATTTTAAAGTTAAAAG+GGG - Chr2:41671878-41671897 MsG0280008928.01.T01:intron 15.0%
!!! TTGTTTTATTTCTTTTCTTT+TGG - Chr2:41672488-41672507 MsG0280008928.01.T01:intron 15.0%
!!! TTTTATACACATACAAATAA+AGG + Chr2:41670542-41670561 None:intergenic 15.0%
!! AATACATAAATAGTTTACCT+TGG + Chr2:41674352-41674371 None:intergenic 20.0%
!! AATATTATTTACCATACACT+GGG - Chr2:41673973-41673992 MsG0280008928.01.T01:intron 20.0%
!! AATGTTCTTTATTACATTCA+AGG + Chr2:41672461-41672480 None:intergenic 20.0%
!! ACAATATAAGAATACACTAT+GGG + Chr2:41674221-41674240 None:intergenic 20.0%
!! AGACAAAAATAAAGTCAAAT+GGG - Chr2:41670666-41670685 MsG0280008928.01.T01:three_prime_UTR 20.0%
!! ATAAGTTAGTAGTGTTAATT+AGG - Chr2:41670583-41670602 MsG0280008928.01.T01:three_prime_UTR 20.0%
!! ATGGTAGAAGAAAATTATAT+AGG - Chr2:41675017-41675036 MsG0280008928.01.T01:intron 20.0%
!! CTATTATTAGACACAATTTA+TGG - Chr2:41674150-41674169 MsG0280008928.01.T01:intron 20.0%
!! CTGGAATAAACATAATAAAA+TGG + Chr2:41671825-41671844 None:intergenic 20.0%
!! GAATGTAATAAAGAACATTA+TGG - Chr2:41672462-41672481 MsG0280008928.01.T01:intron 20.0%
!! TAAGTTAGTAGTGTTAATTA+GGG - Chr2:41670584-41670603 MsG0280008928.01.T01:three_prime_UTR 20.0%
!! TGTATGGTAAATAATATTCA+TGG + Chr2:41673971-41673990 None:intergenic 20.0%
!! TTAAGATAAACAAAGTCTAT+TGG - Chr2:41673818-41673837 MsG0280008928.01.T01:intron 20.0%
!!! AATATAACAATCTGGATTTT+AGG - Chr2:41673371-41673390 MsG0280008928.01.T01:intron 20.0%
!!! ACTTGTATGATATTGATTAT+TGG - Chr2:41670745-41670764 MsG0280008928.01.T01:three_prime_UTR 20.0%
!!! ACTTTATTTGTATACTCATA+TGG - Chr2:41671903-41671922 MsG0280008928.01.T01:intron 20.0%
!!! ATACAGCTATAATTTTGATA+GGG + Chr2:41674309-41674328 None:intergenic 20.0%
!!! ATGAGTAATAGTATTTTAGA+AGG + Chr2:41671304-41671323 None:intergenic 20.0%
!!! ATTACCTTGTTTATCTTAAA+TGG + Chr2:41673637-41673656 None:intergenic 20.0%
!!! ATTAGTCTAATAATTGGTAA+GGG - Chr2:41672102-41672121 MsG0280008928.01.T01:intron 20.0%
!!! ATTGATTATTGGATCATTTT+AGG - Chr2:41670756-41670775 MsG0280008928.01.T01:three_prime_UTR 20.0%
!!! ATTTTTTATTAGATGCTTCT+AGG + Chr2:41672619-41672638 None:intergenic 20.0%
!!! TAAACATCTCTATTTTCAAT+AGG - Chr2:41674502-41674521 MsG0280008928.01.T01:intron 20.0%
!!! TACATTTTAAAGTTAAAAGG+GGG - Chr2:41671879-41671898 MsG0280008928.01.T01:intron 20.0%
!!! TATACAGCTATAATTTTGAT+AGG + Chr2:41674310-41674329 None:intergenic 20.0%
!!! TATTAGTCTAATAATTGGTA+AGG - Chr2:41672101-41672120 MsG0280008928.01.T01:intron 20.0%
!!! TTAAACTTGGATGATTTTTA+AGG + Chr2:41674125-41674144 None:intergenic 20.0%
!!! TTTTTTATTAGATGCTTCTA+GGG + Chr2:41672618-41672637 None:intergenic 20.0%
! AAAAAATGGAAAAGCTGTAA+TGG + Chr2:41670904-41670923 None:intergenic 25.0%
! AAATAATATTCATGGACTTC+CGG + Chr2:41673963-41673982 None:intergenic 25.0%
! AAGAAATGTGAAAAAGACAA+TGG + Chr2:41670460-41670479 None:intergenic 25.0%
! AAGTTAGTAGTGTTAATTAG+GGG - Chr2:41670585-41670604 MsG0280008928.01.T01:three_prime_UTR 25.0%
! AATAATAAGGAGGACATTAT+GGG + Chr2:41671515-41671534 None:intergenic 25.0%
! AATAATCAAGAATCTGTATC+TGG + Chr2:41672388-41672407 None:intergenic 25.0%
! ACGATATAGTTGAATTAGAA+AGG + Chr2:41671688-41671707 None:intergenic 25.0%
! AGAAATGTGAAAAAGACAAT+GGG + Chr2:41670459-41670478 None:intergenic 25.0%
! ATTAGACACAATTTATGGTA+GGG - Chr2:41674155-41674174 MsG0280008928.01.T01:intron 25.0%
! CATACAAATAAAGGACAATT+TGG + Chr2:41670533-41670552 None:intergenic 25.0%
! CATACGTAAATACTACTAAA+GGG - Chr2:41671321-41671340 MsG0280008928.01.T01:intron 25.0%
! GAAAATGTTTATTGCTTGTT+TGG + Chr2:41672821-41672840 None:intergenic 25.0%
! GAATATTATTTACCATACAC+TGG - Chr2:41673972-41673991 MsG0280008928.01.T01:intron 25.0%
! GACAATATAAGAATACACTA+TGG + Chr2:41674222-41674241 None:intergenic 25.0%
! GAGACAAAAATAAAGTCAAA+TGG - Chr2:41670665-41670684 MsG0280008928.01.T01:three_prime_UTR 25.0%
! GCATCTAGTAATTTGAAAAA+GGG - Chr2:41670632-41670651 MsG0280008928.01.T01:three_prime_UTR 25.0%
! TAAAACTAAAGAAAAGCCAA+AGG + Chr2:41671861-41671880 None:intergenic 25.0%
! TAACTGACTAACTAACATAA+GGG - Chr2:41671024-41671043 MsG0280008928.01.T01:intron 25.0%
! TAATAATAAGGAGGACATTA+TGG + Chr2:41671516-41671535 None:intergenic 25.0%
! TACACAAAAACTAGAATAAC+AGG + Chr2:41674856-41674875 None:intergenic 25.0%
! TATTAGACACAATTTATGGT+AGG - Chr2:41674154-41674173 MsG0280008928.01.T01:intron 25.0%
! TCAATTAGCCATTTGTAAAA+AGG - Chr2:41672663-41672682 MsG0280008928.01.T01:intron 25.0%
! TCATACGTAAATACTACTAA+AGG - Chr2:41671320-41671339 MsG0280008928.01.T01:intron 25.0%
! TGCATCTAGTAATTTGAAAA+AGG - Chr2:41670631-41670650 MsG0280008928.01.T01:three_prime_UTR 25.0%
! TGTGTATTCAGGAAAAAAAA+TGG + Chr2:41670918-41670937 None:intergenic 25.0%
! TGTTTATCTTAAATGGTCAT+CGG + Chr2:41673630-41673649 None:intergenic 25.0%
!! ATCTCTATTTTCAATAGGAA+AGG - Chr2:41674507-41674526 MsG0280008928.01.T01:intron 25.0%
!! ATGACCATTTAAGATAAACA+AGG - Chr2:41673630-41673649 MsG0280008928.01.T01:intron 25.0%
!! CAAGAATACCTTTTTGTATA+GGG - Chr2:41674952-41674971 MsG0280008928.01.T01:intron 25.0%
!! GATATTTTGTATACTTGATG+GGG - Chr2:41671925-41671944 MsG0280008928.01.T01:intron 25.0%
!! GGATATTTTGTATACTTGAT+GGG - Chr2:41671924-41671943 MsG0280008928.01.T01:intron 25.0%
!! TCAAGAATACCTTTTTGTAT+AGG - Chr2:41674951-41674970 MsG0280008928.01.T01:intron 25.0%
!! TGGATATTTTGTATACTTGA+TGG - Chr2:41671923-41671942 MsG0280008928.01.T01:intron 25.0%
!! TTTTCGGCTTCTTAATAAAA+TGG + Chr2:41672544-41672563 None:intergenic 25.0%
!! TTTTCTTCTACCATATAAAC+TGG + Chr2:41675011-41675030 None:intergenic 25.0%
!! TTTTGTGATGTATGTTATTG+TGG - Chr2:41671799-41671818 MsG0280008928.01.T01:intron 25.0%
!!! AACATGCTACTTTTGTTATT+AGG - Chr2:41674603-41674622 MsG0280008928.01.T01:CDS 25.0%
!!! ACATGCTACTTTTGTTATTA+GGG - Chr2:41674604-41674623 MsG0280008928.01.T01:CDS 25.0%
!!! TCTAGTTTTTGTGTATTGAT+TGG - Chr2:41674861-41674880 MsG0280008928.01.T01:intron 25.0%
!!! TTCATATTGATATTTTAGCC+TGG - Chr2:41674792-41674811 MsG0280008928.01.T01:intron 25.0%
AAAATGTTTGCCAACTCTTT+GGG - Chr2:41672031-41672050 MsG0280008928.01.T01:intron 30.0%
AAAGTTAACCATCAACTCAA+AGG + Chr2:41673895-41673914 None:intergenic 30.0%
AAATGCATGTGTTCTTTGTA+AGG + Chr2:41674006-41674025 None:intergenic 30.0%
ACTTGCAGAAACAATGAAAA+CGG + Chr2:41671655-41671674 None:intergenic 30.0%
AGATTGTTATATTTCCGACA+TGG + Chr2:41673364-41673383 None:intergenic 30.0%
ATATAGAAAACCCAAAGAGT+TGG + Chr2:41672044-41672063 None:intergenic 30.0%
ATATTGTGCATGCAATATTG+AGG + Chr2:41674738-41674757 None:intergenic 30.0%
ATCATTGCAGAAAAAGTTAG+AGG + Chr2:41674244-41674263 None:intergenic 30.0%
ATGTCGGAAATATAACAATC+TGG - Chr2:41673363-41673382 MsG0280008928.01.T01:intron 30.0%
ATTAAACATCCAATCCCTTT+CGG + Chr2:41672331-41672350 None:intergenic 30.0%
ATTGTTATATTTCCGACATG+GGG + Chr2:41673362-41673381 None:intergenic 30.0%
CAAAAAAAGAGATGTTTACC+TGG + Chr2:41674450-41674469 None:intergenic 30.0%
CAAAAACTAGAATAACAGGT+AGG + Chr2:41674852-41674871 None:intergenic 30.0%
CAAAATACCTTTCCCATATT+TGG - Chr2:41673595-41673614 MsG0280008928.01.T01:intron 30.0%
CAAATGGGTGCTTAAATATA+GGG - Chr2:41670681-41670700 MsG0280008928.01.T01:three_prime_UTR 30.0%
CTAACATAAGGGTCAAAATT+TGG - Chr2:41671035-41671054 MsG0280008928.01.T01:CDS 30.0%
CTAACTGACTAACTAACATA+AGG - Chr2:41671023-41671042 MsG0280008928.01.T01:intron 30.0%
GAATAGATTGAAATGTGATG+AGG - Chr2:41674906-41674925 MsG0280008928.01.T01:intron 30.0%
GATTGTTATATTTCCGACAT+GGG + Chr2:41673363-41673382 None:intergenic 30.0%
TAAAAAATCAAAGCTACCTG+TGG - Chr2:41672631-41672650 MsG0280008928.01.T01:intron 30.0%
TAATTGATCCAATTATCCAC+AGG + Chr2:41672650-41672669 None:intergenic 30.0%
TAGGATATTAAGAAAGACCT+TGG - Chr2:41673390-41673409 MsG0280008928.01.T01:intron 30.0%
TATCCTAACATTGTGTATTC+AGG + Chr2:41670929-41670948 None:intergenic 30.0%
TATGAGATTCATAAGTGGTT+TGG + Chr2:41672921-41672940 None:intergenic 30.0%
TATGTTTATTCCAGCAGAAT+TGG - Chr2:41671831-41671850 MsG0280008928.01.T01:intron 30.0%
TCAAATGGGTGCTTAAATAT+AGG - Chr2:41670680-41670699 MsG0280008928.01.T01:three_prime_UTR 30.0%
TCAGTAATTTCTGTTCGTAA+AGG + Chr2:41672196-41672215 None:intergenic 30.0%
TCTTGAAACCCTATACAAAA+AGG + Chr2:41674963-41674982 None:intergenic 30.0%
TGATGAGAACGCTAATAATA+AGG + Chr2:41671528-41671547 None:intergenic 30.0%
TTAGCCATTTGTAAAAAGGA+AGG - Chr2:41672667-41672686 MsG0280008928.01.T01:intron 30.0%
TTGGAAAAACAACACAAAGA+GGG - Chr2:41673409-41673428 MsG0280008928.01.T01:intron 30.0%
TTTACGAACAGAAATTACTG+AGG - Chr2:41672195-41672214 MsG0280008928.01.T01:intron 30.0%
TTTCCTGAATACACAATGTT+AGG - Chr2:41670923-41670942 MsG0280008928.01.T01:intron 30.0%
TTTGGTATGAGATTCATAAG+TGG + Chr2:41672926-41672945 None:intergenic 30.0%
! AAAAACATGCTATGCTTTTG+TGG - Chr2:41674565-41674584 MsG0280008928.01.T01:intron 30.0%
! ACTCTGTTTTATGGTTGATT+TGG + Chr2:41672797-41672816 None:intergenic 30.0%
! AGTTGTTCTGAATGAGATAT+TGG - Chr2:41671711-41671730 MsG0280008928.01.T01:intron 30.0%
! ATAACAGAATCATGTCACTT+CGG - Chr2:41671958-41671977 MsG0280008928.01.T01:intron 30.0%
! ATTATTGGATCATTTTAGGC+AGG - Chr2:41670760-41670779 MsG0280008928.01.T01:three_prime_UTR 30.0%
! GGCAAACATTTTCACATTAA+GGG + Chr2:41672023-41672042 None:intergenic 30.0%
! TAGGATATGACTAGTTAAGA+AGG - Chr2:41670942-41670961 MsG0280008928.01.T01:intron 30.0%
! TGGCAAACATTTTCACATTA+AGG + Chr2:41672024-41672043 None:intergenic 30.0%
! TGTTAATTAGGGGTATGTTT+AGG - Chr2:41670595-41670614 MsG0280008928.01.T01:three_prime_UTR 30.0%
!! ATAATTTTGATAGGGCACAT+GGG + Chr2:41674301-41674320 None:intergenic 30.0%
!! CTTTTTATGTCGCTTAGATT+CGG - Chr2:41673911-41673930 MsG0280008928.01.T01:intron 30.0%
!! TATAATTTTGATAGGGCACA+TGG + Chr2:41674302-41674321 None:intergenic 30.0%
!! TTGCTTTTGTGGTTATTGAA+TGG - Chr2:41674541-41674560 MsG0280008928.01.T01:intron 30.0%
!! TTTTTATGTCGCTTAGATTC+GGG - Chr2:41673912-41673931 MsG0280008928.01.T01:intron 30.0%
!!! AGTTTTTGTGTATTGATTGG+AGG - Chr2:41674864-41674883 MsG0280008928.01.T01:intron 30.0%
!!! ATGAGGTTTTATTGTTTGGT+AGG - Chr2:41674923-41674942 MsG0280008928.01.T01:intron 30.0%
!!! CTTTTGTTATTAGGGTATGA+AGG - Chr2:41674612-41674631 MsG0280008928.01.T01:CDS 30.0%
!!! TGTGATGAGGTTTTATTGTT+TGG - Chr2:41674919-41674938 MsG0280008928.01.T01:intron 30.0%
!!! TGTTTTATGGTTGATTTGGA+AGG + Chr2:41672793-41672812 None:intergenic 30.0%
!!! TTCCCATTGTTCTCTTTTTT+CGG + Chr2:41672560-41672579 None:intergenic 30.0%
AAACAAGGTAATTCGTCCAT+CGG - Chr2:41673645-41673664 MsG0280008928.01.T01:intron 35.0%
AAGAGTAAGTTACCACTTGA+GGG - Chr2:41673097-41673116 MsG0280008928.01.T01:intron 35.0%
AAGATATGGAGGGTTATGAA+AGG + Chr2:41671485-41671504 None:intergenic 35.0%
AAGCCGAAAAAAGAGAACAA+TGG - Chr2:41672554-41672573 MsG0280008928.01.T01:intron 35.0%
AATGGTTGCTAGGTAAAAAG+GGG + Chr2:41672696-41672715 None:intergenic 35.0%
ACAATGGGTGACTACATTAA+GGG + Chr2:41670444-41670463 None:intergenic 35.0%
ACATTCAAGGAACTTTGACA+TGG + Chr2:41672448-41672467 None:intergenic 35.0%
ACTCGATCAAAACATTGTCT+TGG + Chr2:41672720-41672739 None:intergenic 35.0%
AGCCGAAAAAAGAGAACAAT+GGG - Chr2:41672555-41672574 MsG0280008928.01.T01:intron 35.0%
AGTCTAATAATTGGTAAGGG+TGG - Chr2:41672105-41672124 MsG0280008928.01.T01:intron 35.0%
ATGAATCTCATACCAAATCG+AGG - Chr2:41672929-41672948 MsG0280008928.01.T01:intron 35.0%
ATTGATCATGTGACCTTTAG+CGG - Chr2:41671610-41671629 MsG0280008928.01.T01:intron 35.0%
ATTGGAGGAATGTGATGAAA+TGG - Chr2:41674879-41674898 MsG0280008928.01.T01:intron 35.0%
CAATGGTTGCTAGGTAAAAA+GGG + Chr2:41672697-41672716 None:intergenic 35.0%
CATTATGAAGCTCAAGTTCT+TGG + Chr2:41674075-41674094 None:intergenic 35.0%
CATTGAATGTCGTATAACTC+CGG - Chr2:41673941-41673960 MsG0280008928.01.T01:intron 35.0%
CCAAAAAAGAATGGGAGTTA+AGG - Chr2:41673167-41673186 MsG0280008928.01.T01:intron 35.0%
CTACTACTAAGGAATAAGTG+CGG - Chr2:41671350-41671369 MsG0280008928.01.T01:intron 35.0%
CTTGCAGAAACAATGAAAAC+GGG + Chr2:41671654-41671673 None:intergenic 35.0%
CTTGGAAAAACAACACAAAG+AGG - Chr2:41673408-41673427 MsG0280008928.01.T01:intron 35.0%
GAAAATGTTTGCCAACTCTT+TGG - Chr2:41672030-41672049 MsG0280008928.01.T01:intron 35.0%
GATTAGGGATCCAGTTTATA+TGG - Chr2:41674998-41675017 MsG0280008928.01.T01:intron 35.0%
GGAATCTTAGGCTTTCTAAT+TGG + Chr2:41673736-41673755 None:intergenic 35.0%
GGTGTAATTGTGAAGAAGTT+GGG + Chr2:41673482-41673501 None:intergenic 35.0%
GTAGAAACCAATAGATCTGA+AGG - Chr2:41671088-41671107 MsG0280008928.01.T01:intron 35.0%
GTTATTAGGGTATGAAGGAA+AGG - Chr2:41674617-41674636 MsG0280008928.01.T01:CDS 35.0%
GTTGTTGTCAATTGTTCTTC+CGG + Chr2:41673286-41673305 None:intergenic 35.0%
TAGCCTGGAGTTATTTGAAA+TGG - Chr2:41674807-41674826 MsG0280008928.01.T01:intron 35.0%
TCAAAACATTGTCTTGGCAA+TGG + Chr2:41672714-41672733 None:intergenic 35.0%
TCACCATTTCAAATAACTCC+AGG + Chr2:41674813-41674832 None:intergenic 35.0%
TCGTTAAAAACATCCGCTAA+AGG + Chr2:41671626-41671645 None:intergenic 35.0%
TCTCATCACGAATTCTGTTT+GGG - Chr2:41671540-41671559 MsG0280008928.01.T01:intron 35.0%
TGAGAACGCTAATAATAAGG+AGG + Chr2:41671525-41671544 None:intergenic 35.0%
TGGTGTAATTGTGAAGAAGT+TGG + Chr2:41673483-41673502 None:intergenic 35.0%
TTACTCTTGGCAACTTCTTA+GGG + Chr2:41673085-41673104 None:intergenic 35.0%
TTCATAACCCTCCATATCTT+GGG - Chr2:41671485-41671504 MsG0280008928.01.T01:intron 35.0%
TTCTCATCACGAATTCTGTT+TGG - Chr2:41671539-41671558 MsG0280008928.01.T01:intron 35.0%
TTCTGAATGAGATATTGGTC+TGG - Chr2:41671716-41671735 MsG0280008928.01.T01:intron 35.0%
TTTAATCACCGAAGCTTACA+CGG - Chr2:41674405-41674424 MsG0280008928.01.T01:intron 35.0%
TTTCATAACCCTCCATATCT+TGG - Chr2:41671484-41671503 MsG0280008928.01.T01:intron 35.0%
! AACTTTGAAGAAGGGATAAG+TGG - Chr2:41672871-41672890 MsG0280008928.01.T01:intron 35.0%
! AATTCTGTTTGGGATTGTTG+AGG - Chr2:41671550-41671569 MsG0280008928.01.T01:intron 35.0%
! ACAGATTGAGTTTTCTGTTC+AGG + Chr2:41671277-41671296 None:intergenic 35.0%
! AGGGTCAAAATTTGGAGTTT+AGG - Chr2:41671043-41671062 MsG0280008928.01.T01:CDS 35.0%
! CAAAGTTTTTGCTCCCTTAT+TGG + Chr2:41672858-41672877 None:intergenic 35.0%
! CAGATTGAGTTTTCTGTTCA+GGG + Chr2:41671276-41671295 None:intergenic 35.0%
! GAGTTTGATGGTTATTGTGA+GGG - Chr2:41671756-41671775 MsG0280008928.01.T01:intron 35.0%
! GGAGCAAAAACTTTGAAGAA+GGG - Chr2:41672863-41672882 MsG0280008928.01.T01:intron 35.0%
! GGAGTTATTTGAAATGGTGA+AGG - Chr2:41674813-41674832 MsG0280008928.01.T01:intron 35.0%
! GGGTCAAAATTTGGAGTTTA+GGG - Chr2:41671044-41671063 MsG0280008928.01.T01:CDS 35.0%
! TCATTTTAGGCAGGAATTCT+TGG - Chr2:41670769-41670788 MsG0280008928.01.T01:exon 35.0%
! TGAGTTTGATGGTTATTGTG+AGG - Chr2:41671755-41671774 MsG0280008928.01.T01:intron 35.0%
! TGTTTAGCCTTCAGATCTAT+TGG + Chr2:41671098-41671117 None:intergenic 35.0%
! TTGTTTGGCACTCTGTTTTA+TGG + Chr2:41672806-41672825 None:intergenic 35.0%
! TTTGGTTAGACAAGTGGATT+GGG + Chr2:41673440-41673459 None:intergenic 35.0%
!! ACTTATTTTCAAGGGGTCAT+TGG + Chr2:41672764-41672783 None:intergenic 35.0%
!! TAATTTTGATAGGGCACATG+GGG + Chr2:41674300-41674319 None:intergenic 35.0%
!! TTTTGGTTAGACAAGTGGAT+TGG + Chr2:41673441-41673460 None:intergenic 35.0%
!!! CCTTAACTCCCATTCTTTTT+TGG + Chr2:41673170-41673189 None:intergenic 35.0%
!!! CTCTTTGTGTTGTTTTTCCA+AGG + Chr2:41673410-41673429 None:intergenic 35.0%
!!! TAACTCCCATTCTTTTTTGG+AGG + Chr2:41673167-41673186 None:intergenic 35.0%
AAGACTAGTGGCTGAAGTAT+AGG + Chr2:41671453-41671472 None:intergenic 40.0%
AAGATGATCCTCACTTTCTG+TGG - Chr2:41672974-41672993 MsG0280008928.01.T01:intron 40.0%
AAGGCTTTCACAGTTCTTCA+TGG + Chr2:41674106-41674125 None:intergenic 40.0%
AAGGGATAAGCCTACTACTA+AGG - Chr2:41671339-41671358 MsG0280008928.01.T01:intron 40.0%
AATGATCTTGCACAGAGCTT+AGG - Chr2:41674643-41674662 MsG0280008928.01.T01:CDS 40.0%
AATTGTTCTTCCGGTGTCTT+TGG + Chr2:41673277-41673296 None:intergenic 40.0%
ACCAAATCGAGGAAGCAAAA+GGG - Chr2:41672940-41672959 MsG0280008928.01.T01:intron 40.0%
ACTTCCCTTGATGAAGGATT+AGG - Chr2:41674982-41675001 MsG0280008928.01.T01:intron 40.0%
AGAAATTACTGAGGCAGCTA+TGG - Chr2:41672204-41672223 MsG0280008928.01.T01:intron 40.0%
AGAATGTAAGCCTATCCATC+AGG + Chr2:41674762-41674781 None:intergenic 40.0%
AGACTAGTGGCTGAAGTATA+GGG + Chr2:41671452-41671471 None:intergenic 40.0%
AGGAAAGACAAGAAGACTAG+TGG + Chr2:41671465-41671484 None:intergenic 40.0%
ATCAACAACCAAGACACCAA+AGG - Chr2:41673028-41673047 MsG0280008928.01.T01:intron 40.0%
ATGGGCAAATGACAGAAACT+GGG + Chr2:41673757-41673776 None:intergenic 40.0%
ATGGTTGCTAGGTAAAAAGG+GGG + Chr2:41672695-41672714 None:intergenic 40.0%
ATTGTGAAGAAGTTGGGTGA+CGG + Chr2:41673476-41673495 None:intergenic 40.0%
CAAAGCTACCTGTGGATAAT+TGG - Chr2:41672639-41672658 MsG0280008928.01.T01:intron 40.0%
CAAAGGTTAACCAATTCTGC+TGG + Chr2:41671844-41671863 None:intergenic 40.0%
CAAGAGTAAGTTACCACTTG+AGG - Chr2:41673096-41673115 MsG0280008928.01.T01:intron 40.0%
CACAAACTGTTAGACCGAAA+GGG - Chr2:41672314-41672333 MsG0280008928.01.T01:intron 40.0%
CACATGGGGGAATAGAAATA+AGG + Chr2:41674286-41674305 None:intergenic 40.0%
CAGCAGAATTGGTTAACCTT+TGG - Chr2:41671842-41671861 MsG0280008928.01.T01:intron 40.0%
CCAGATTAAGTCTAGTAGGA+AGG - Chr2:41673055-41673074 MsG0280008928.01.T01:intron 40.0%
CCTTCCTACTAGACTTAATC+TGG + Chr2:41673058-41673077 None:intergenic 40.0%
CGCACTTATTCCTTAGTAGT+AGG + Chr2:41671352-41671371 None:intergenic 40.0%
CTCAAGTGGTAACTTACTCT+TGG + Chr2:41673098-41673117 None:intergenic 40.0%
CTTACTCTTGGCAACTTCTT+AGG + Chr2:41673086-41673105 None:intergenic 40.0%
CTTCCCTTGATGAAGGATTA+GGG - Chr2:41674983-41675002 MsG0280008928.01.T01:intron 40.0%
CTTCTTCTTCCTCTTCTCAT+TGG + Chr2:41673553-41673572 None:intergenic 40.0%
GAAATAAGGCAGTGGAGAAA+AGG + Chr2:41674272-41674291 None:intergenic 40.0%
GAAGCCAGATTAAGTCTAGT+AGG - Chr2:41673051-41673070 MsG0280008928.01.T01:intron 40.0%
GAATAATGCATCGTGCTCTA+GGG + Chr2:41671590-41671609 None:intergenic 40.0%
GACAATGGGTGACTACATTA+AGG + Chr2:41670445-41670464 None:intergenic 40.0%
GAGTTGTTGAAGAAGCGAAT+TGG - Chr2:41671066-41671085 MsG0280008928.01.T01:CDS 40.0%
GATCCCTAATCCTTCATCAA+GGG + Chr2:41674989-41675008 None:intergenic 40.0%
GATTCTTAGGTAACTCTGTC+TGG - Chr2:41672160-41672179 MsG0280008928.01.T01:intron 40.0%
GCAATGGTTGCTAGGTAAAA+AGG + Chr2:41672698-41672717 None:intergenic 40.0%
TACATATCCACCAAAGACAC+CGG - Chr2:41673264-41673283 MsG0280008928.01.T01:CDS 40.0%
TACCAAATCGAGGAAGCAAA+AGG - Chr2:41672939-41672958 MsG0280008928.01.T01:intron 40.0%
TACTCTTGGCAACTTCTTAG+GGG + Chr2:41673084-41673103 None:intergenic 40.0%
TCAACAACCAAGACACCAAA+GGG - Chr2:41673029-41673048 MsG0280008928.01.T01:intron 40.0%
TGAATAATGCATCGTGCTCT+AGG + Chr2:41671591-41671610 None:intergenic 40.0%
TGACAGAAACTGGGAATCTT+AGG + Chr2:41673748-41673767 None:intergenic 40.0%
TGCCTCCTCCAAAAAAGAAT+GGG - Chr2:41673159-41673178 MsG0280008928.01.T01:intron 40.0%
TGCTTAAATATAGGGACGGA+GGG - Chr2:41670689-41670708 MsG0280008928.01.T01:three_prime_UTR 40.0%
TGGGTGCTTAAATATAGGGA+CGG - Chr2:41670685-41670704 MsG0280008928.01.T01:three_prime_UTR 40.0%
TTATGGGAAGACCCAAGATA+TGG + Chr2:41671499-41671518 None:intergenic 40.0%
TTCAAGACTTCCCTTGATGA+AGG - Chr2:41674976-41674995 MsG0280008928.01.T01:intron 40.0%
TTGAGTGCCAAATATGGGAA+AGG + Chr2:41673605-41673624 None:intergenic 40.0%
TTGCCTCCTCCAAAAAAGAA+TGG - Chr2:41673158-41673177 MsG0280008928.01.T01:intron 40.0%
TTGTGAGGGTGAGTTAGTAA+AGG - Chr2:41671770-41671789 MsG0280008928.01.T01:intron 40.0%
TTTCACAGTTCTTCATGGCA+GGG + Chr2:41674101-41674120 None:intergenic 40.0%
TTTCTGTTCGTAAAGGTTGC+TGG + Chr2:41672189-41672208 None:intergenic 40.0%
! AAAAGTTTTGCTCCCTCAAG+TGG + Chr2:41673112-41673131 None:intergenic 40.0%
! AGTTTTTGCTCCCTTATTGG+TGG + Chr2:41672855-41672874 None:intergenic 40.0%
! GAAGTATAGGGTGTCTAAGA+AGG + Chr2:41671440-41671459 None:intergenic 40.0%
! GGCTCCTTCCTTTTTACAAA+TGG + Chr2:41672674-41672693 None:intergenic 40.0%
! GGGAGCAAAAACTTTGAAGA+AGG - Chr2:41672862-41672881 MsG0280008928.01.T01:intron 40.0%
! GTTTTTGCTCCCTTATTGGT+GGG + Chr2:41672854-41672873 None:intergenic 40.0%
! TGTCATTTGCCCATCAGTTA+TGG - Chr2:41673763-41673782 MsG0280008928.01.T01:intron 40.0%
!! AATTTTGATAGGGCACATGG+GGG + Chr2:41674299-41674318 None:intergenic 40.0%
!! AGAAGAAGCACTAGAAAGAC+TGG - Chr2:41673565-41673584 MsG0280008928.01.T01:intron 40.0%
!! AGGCGAGGAACTTATTTTCA+AGG + Chr2:41672773-41672792 None:intergenic 40.0%
!! GAAGAAGCACTAGAAAGACT+GGG - Chr2:41673566-41673585 MsG0280008928.01.T01:intron 40.0%
!! GCGAGGAACTTATTTTCAAG+GGG + Chr2:41672771-41672790 None:intergenic 40.0%
!! GGCGAGGAACTTATTTTCAA+GGG + Chr2:41672772-41672791 None:intergenic 40.0%
!! TAAGTGGTTTGGTTTCTCCA+CGG + Chr2:41672910-41672929 None:intergenic 40.0%
!! TGGTCTGGTTCTATAATGCA+GGG - Chr2:41671731-41671750 MsG0280008928.01.T01:intron 40.0%
!! TTGGTCTGGTTCTATAATGC+AGG - Chr2:41671730-41671749 MsG0280008928.01.T01:intron 40.0%
!!! CGGTTTTGAGTGCCAAATAT+GGG + Chr2:41673610-41673629 None:intergenic 40.0%
!!! TCGGTTTTGAGTGCCAAATA+TGG + Chr2:41673611-41673630 None:intergenic 40.0%
!!! TCTTTTTTGGAGGAGGCAAA+CGG + Chr2:41673157-41673176 None:intergenic 40.0%
AAAACTCCCACCAATGCCAA+CGG - Chr2:41673225-41673244 MsG0280008928.01.T01:intron 45.0%
ACAGAGATTGCGACATGACA+CGG - Chr2:41674711-41674730 MsG0280008928.01.T01:intron 45.0%
ACATGTATGGTTGGGGAGAA+AGG + Chr2:41673523-41673542 None:intergenic 45.0%
ACTCTTGGCAACTTCTTAGG+GGG + Chr2:41673083-41673102 None:intergenic 45.0%
ACTGAGGCAGCTATGGAATT+GGG - Chr2:41672211-41672230 MsG0280008928.01.T01:intron 45.0%
ACTGTTAGACCGAAAGGGAT+TGG - Chr2:41672319-41672338 MsG0280008928.01.T01:intron 45.0%
AGACCGATCACACTAGATGA+AGG - Chr2:41672582-41672601 MsG0280008928.01.T01:intron 45.0%
ATATTTCCGACATGGGGAGT+TGG + Chr2:41673356-41673375 None:intergenic 45.0%
ATCACACTAGATGAAGGACG+AGG - Chr2:41672588-41672607 MsG0280008928.01.T01:intron 45.0%
ATGTATGGTTGGGGAGAAAG+GGG + Chr2:41673521-41673540 None:intergenic 45.0%
CAGAAAGAACTTGCAGCGTA+TGG - Chr2:41670862-41670881 MsG0280008928.01.T01:intron 45.0%
CATACGCTGCAAGTTCTTTC+TGG + Chr2:41670864-41670883 None:intergenic 45.0%
CATGTATGGTTGGGGAGAAA+GGG + Chr2:41673522-41673541 None:intergenic 45.0%
CATTGGTGGAAGGACATGTA+TGG + Chr2:41673536-41673555 None:intergenic 45.0%
CCTTCTTCACAGTCTCAAAC+AGG + Chr2:41670807-41670826 None:intergenic 45.0%
CGTCCTTCATCTAGTGTGAT+CGG + Chr2:41672588-41672607 None:intergenic 45.0%
CTATAAACCATGCTCAGCCA+AGG - Chr2:41674332-41674351 MsG0280008928.01.T01:intron 45.0%
CTCGAGACTTCAGTGAGAAA+CGG - Chr2:41674046-41674065 MsG0280008928.01.T01:intron 45.0%
CTTCTTCCTCTTCTCATTGG+TGG + Chr2:41673550-41673569 None:intergenic 45.0%
CTTTCACAGTTCTTCATGGC+AGG + Chr2:41674102-41674121 None:intergenic 45.0%
GATGGGCAAATGACAGAAAC+TGG + Chr2:41673758-41673777 None:intergenic 45.0%
GATTCCTCTCTGAGTTGTGT+CGG + Chr2:41671244-41671263 None:intergenic 45.0%
GCACAAACTGTTAGACCGAA+AGG - Chr2:41672313-41672332 MsG0280008928.01.T01:intron 45.0%
GCTTAAATATAGGGACGGAG+GGG - Chr2:41670690-41670709 MsG0280008928.01.T01:three_prime_UTR 45.0%
GGATCCCTAATCCTTCATCA+AGG + Chr2:41674990-41675009 None:intergenic 45.0%
GGGGAATAGAAATAAGGCAG+TGG + Chr2:41674280-41674299 None:intergenic 45.0%
GTGCTTAAATATAGGGACGG+AGG - Chr2:41670688-41670707 MsG0280008928.01.T01:three_prime_UTR 45.0%
GTGGAAGGACATGTATGGTT+GGG + Chr2:41673531-41673550 None:intergenic 45.0%
TAATGCAGGGCTGAGTTTGA+TGG - Chr2:41671744-41671763 MsG0280008928.01.T01:intron 45.0%
TACTGAGGCAGCTATGGAAT+TGG - Chr2:41672210-41672229 MsG0280008928.01.T01:intron 45.0%
TAGTTTACCTTGGCTGAGCA+TGG + Chr2:41674342-41674361 None:intergenic 45.0%
TATTTCCGACATGGGGAGTT+GGG + Chr2:41673355-41673374 None:intergenic 45.0%
TCCCTTATTGGTGGGACAAA+GGG + Chr2:41672846-41672865 None:intergenic 45.0%
TGACTACATTAAGGGACGGA+GGG + Chr2:41670436-41670455 None:intergenic 45.0%
TGCATGCACAATATGCCTGA+TGG - Chr2:41674744-41674763 MsG0280008928.01.T01:intron 45.0%
TGGAAGGACATGTATGGTTG+GGG + Chr2:41673530-41673549 None:intergenic 45.0%
TGGGTGACTACATTAAGGGA+CGG + Chr2:41670440-41670459 None:intergenic 45.0%
TTCACAGTTCTTCATGGCAG+GGG + Chr2:41674100-41674119 None:intergenic 45.0%
TTCCTCTTCTCATTGGTGGA+AGG + Chr2:41673546-41673565 None:intergenic 45.0%
TTCGTCTTCCACAGAAAGTG+AGG + Chr2:41672985-41673004 None:intergenic 45.0%
TTGTCTTGGCAATGGTTGCT+AGG + Chr2:41672706-41672725 None:intergenic 45.0%
TTGTGAAGAAGTTGGGTGAC+GGG + Chr2:41673475-41673494 None:intergenic 45.0%
TTTCAAGGGGTCATTGGTGA+CGG + Chr2:41672758-41672777 None:intergenic 45.0%
! ACAAAGTCTATTGGCCTCGT+AGG - Chr2:41673827-41673846 MsG0280008928.01.T01:intron 45.0%
! CAAAGTCTATTGGCCTCGTA+GGG - Chr2:41673828-41673847 MsG0280008928.01.T01:intron 45.0%
! CCTGTTTGAGACTGTGAAGA+AGG - Chr2:41670804-41670823 MsG0280008928.01.T01:CDS 45.0%
! GACTGTGAAGAAGGCACAAA+TGG - Chr2:41670813-41670832 MsG0280008928.01.T01:CDS 45.0%
! GACTTAATCTGGCTTCCCTT+TGG + Chr2:41673047-41673066 None:intergenic 45.0%
! GCACAATATGCCTGATGGAT+AGG - Chr2:41674749-41674768 MsG0280008928.01.T01:intron 45.0%
! GGTAATTCGTCCATCGGTTA+TGG - Chr2:41673651-41673670 MsG0280008928.01.T01:intron 45.0%
! GGTGTCTTTGGTGGATATGT+AGG + Chr2:41673265-41673284 None:intergenic 45.0%
! TGGTGGATATGTAGGATTCG+TGG + Chr2:41673257-41673276 None:intergenic 45.0%
! TGTCCAAGTTGAAGCAGTGA+GGG - Chr2:41670837-41670856 MsG0280008928.01.T01:intron 45.0%
! TTGTCCAAGTTGAAGCAGTG+AGG - Chr2:41670836-41670855 MsG0280008928.01.T01:CDS 45.0%
! TTTTGAGCAGCCATAACCGA+TGG + Chr2:41673664-41673683 None:intergenic 45.0%
!! TATGGTTGATTTGGAAGGCG+AGG + Chr2:41672788-41672807 None:intergenic 45.0%
!! TCACTGGTCCTTTGAGTTGA+TGG - Chr2:41673884-41673903 MsG0280008928.01.T01:intron 45.0%
!!! CACGGTTTTGGTTAGACAAG+TGG + Chr2:41673446-41673465 None:intergenic 45.0%
!!! CTCCCATTCTTTTTTGGAGG+AGG + Chr2:41673164-41673183 None:intergenic 45.0%
AAAGGACCAGTGAAGTGCAG+GGG + Chr2:41673877-41673896 None:intergenic 50.0%
AAGGCTGAACTCCCAGTGTA+TGG + Chr2:41673987-41674006 None:intergenic 50.0%
AGAAGGGATAAGTGGTCACC+CGG - Chr2:41672879-41672898 MsG0280008928.01.T01:intron 50.0%
AGAGCTTAGGAATGCCACCT+GGG - Chr2:41674656-41674675 MsG0280008928.01.T01:CDS 50.0%
AGTTATGGCTGCTCACCAGT+TGG - Chr2:41673778-41673797 MsG0280008928.01.T01:intron 50.0%
ATCATGAGCCCTTGAGAGGT+TGG + Chr2:41673010-41673029 None:intergenic 50.0%
CAAAGGACCAGTGAAGTGCA+GGG + Chr2:41673878-41673897 None:intergenic 50.0%
CAACTCGTCTCTTGCACACT+AGG - Chr2:41673302-41673321 MsG0280008928.01.T01:intron 50.0%
CCCCTTTGTCCCACCAATAA+GGG - Chr2:41672842-41672861 MsG0280008928.01.T01:intron 50.0%
CCCTTATTGGTGGGACAAAG+GGG + Chr2:41672845-41672864 None:intergenic 50.0%
CCTTATTGGTGGGACAAAGG+GGG + Chr2:41672844-41672863 None:intergenic 50.0%
CTCAGAGAGGAATCCTACTC+TGG - Chr2:41671250-41671269 MsG0280008928.01.T01:intron 50.0%
CTCCCTTATTGGTGGGACAA+AGG + Chr2:41672847-41672866 None:intergenic 50.0%
CTTATTGGTGGGACAAAGGG+GGG + Chr2:41672843-41672862 None:intergenic 50.0%
GGGAAGACCCAAGATATGGA+GGG + Chr2:41671495-41671514 None:intergenic 50.0%
GGTGAGCAGCCATAACTGAT+GGG + Chr2:41673775-41673794 None:intergenic 50.0%
GGTGGAAGGACATGTATGGT+TGG + Chr2:41673532-41673551 None:intergenic 50.0%
GTCCTTCCACCAATGAGAAG+AGG - Chr2:41673541-41673560 MsG0280008928.01.T01:intron 50.0%
GTGACTACATTAAGGGACGG+AGG + Chr2:41670437-41670456 None:intergenic 50.0%
GTGTGCTTCCGTGTAAGCTT+CGG + Chr2:41674416-41674435 None:intergenic 50.0%
GTTATGGCTGCTCACCAGTT+GGG - Chr2:41673779-41673798 MsG0280008928.01.T01:intron 50.0%
GTTGATCATGAGCCCTTGAG+AGG + Chr2:41673014-41673033 None:intergenic 50.0%
TAACAAAACCACGCCCTACG+AGG + Chr2:41673844-41673863 None:intergenic 50.0%
TCAAAGGACCAGTGAAGTGC+AGG + Chr2:41673879-41673898 None:intergenic 50.0%
TCACAGTTCTTCATGGCAGG+GGG + Chr2:41674099-41674118 None:intergenic 50.0%
TGGGAAGACCCAAGATATGG+AGG + Chr2:41671496-41671515 None:intergenic 50.0%
TGGTGAGCAGCCATAACTGA+TGG + Chr2:41673776-41673795 None:intergenic 50.0%
TGTATGGTTGGGGAGAAAGG+GGG + Chr2:41673520-41673539 None:intergenic 50.0%
TGTGAAGAAGTTGGGTGACG+GGG + Chr2:41673474-41673493 None:intergenic 50.0%
TGTTCTTCCGGTGTCTTTGG+TGG + Chr2:41673274-41673293 None:intergenic 50.0%
TGTTTACCTGGACACTCCTC+TGG + Chr2:41674438-41674457 None:intergenic 50.0%
TTATGGCTGCTCACCAGTTG+GGG - Chr2:41673780-41673799 MsG0280008928.01.T01:intron 50.0%
TTCAATCCTTCACCAAGCCC+AGG + Chr2:41674676-41674695 None:intergenic 50.0%
TTTCTGTTCAGGGCCAGAGT+AGG + Chr2:41671266-41671285 None:intergenic 50.0%
! CGGAGGGGTATATTGTTGGT+TGG - Chr2:41670705-41670724 MsG0280008928.01.T01:three_prime_UTR 50.0%
! GCCCTTTTGCTTCCTCGATT+TGG + Chr2:41672944-41672963 None:intergenic 50.0%
!! TTAGCTCCGTTGGCATTGGT+GGG + Chr2:41673234-41673253 None:intergenic 50.0%
!! TTTTGGAGGAGGCAAACGGA+AGG + Chr2:41673153-41673172 None:intergenic 50.0%
!!! TGGCATTGGTGGGAGTTTTG+CGG + Chr2:41673224-41673243 None:intergenic 50.0%
AATCCTTCACCAAGCCCAGG+TGG + Chr2:41674673-41674692 None:intergenic 55.0%
AGACGAACGCCAACCTCTCA+AGG - Chr2:41672998-41673017 MsG0280008928.01.T01:intron 55.0%
AGCTCCGACACAACTCAGAG+AGG - Chr2:41671237-41671256 MsG0280008928.01.T01:intron 55.0%
AGGGGGGAGTTGAGAGTGAT+TGG + Chr2:41673503-41673522 None:intergenic 55.0%
CAAACGGAAGGTGGATGGGA+AGG + Chr2:41673141-41673160 None:intergenic 55.0%
CAGAGCTTAGGAATGCCACC+TGG - Chr2:41674655-41674674 MsG0280008928.01.T01:CDS 55.0%
CCCCCTTTGTCCCACCAATA+AGG - Chr2:41672841-41672860 MsG0280008928.01.T01:intron 55.0%
GAAGGTGGATGGGAAGGTTG+TGG + Chr2:41673135-41673154 None:intergenic 55.0%
GACGAACGCCAACCTCTCAA+GGG - Chr2:41672999-41673018 MsG0280008928.01.T01:intron 55.0%
GAGGCAAACGGAAGGTGGAT+GGG + Chr2:41673145-41673164 None:intergenic 55.0%
GGACCCTCACTGCTTCAACT+TGG + Chr2:41670843-41670862 None:intergenic 55.0%
GTATGGTTGGGGAGAAAGGG+GGG + Chr2:41673519-41673538 None:intergenic 55.0%
TATGGCTGCTCACCAGTTGG+GGG - Chr2:41673781-41673800 MsG0280008928.01.T01:intron 55.0%
TGGTTTCTCCACGGCTCTTC+CGG + Chr2:41672901-41672920 None:intergenic 55.0%
TGTGTCTCTTGTCCCCCAAC+TGG + Chr2:41673796-41673815 None:intergenic 55.0%
TTAGGAATGCCACCTGGGCT+TGG - Chr2:41674661-41674680 MsG0280008928.01.T01:CDS 55.0%
! CTTACACGGAAGCACACCAG+AGG - Chr2:41674419-41674438 MsG0280008928.01.T01:intron 55.0%
! GGATTCGTGGTTAGCTCCGT+TGG + Chr2:41673244-41673263 None:intergenic 55.0%
! GGGACGGAGGGGTATATTGT+TGG - Chr2:41670701-41670720 MsG0280008928.01.T01:three_prime_UTR 55.0%
! GTGAAGAAGTTGGGTGACGG+GGG + Chr2:41673473-41673492 None:intergenic 55.0%
! GTGGTTAGCTCCGTTGGCAT+TGG + Chr2:41673238-41673257 None:intergenic 55.0%
! GTTAGCTCCGTTGGCATTGG+TGG + Chr2:41673235-41673254 None:intergenic 55.0%
!! ATTGGTGACGGTTCTCGAGG+TGG + Chr2:41672746-41672765 None:intergenic 55.0%
!! CTGGCTTCCCTTTGGTGTCT+TGG + Chr2:41673039-41673058 None:intergenic 55.0%
!! GTCATTGGTGACGGTTCTCG+AGG + Chr2:41672749-41672768 None:intergenic 55.0%
!! TGAAGAAGTTGGGTGACGGG+GGG + Chr2:41673472-41673491 None:intergenic 55.0%
ACTAGGTTCCACCGCTGCAC+CGG - Chr2:41673319-41673338 MsG0280008928.01.T01:intron 60.0%
GGAGGCAAACGGAAGGTGGA+TGG + Chr2:41673146-41673165 None:intergenic 60.0%
GGTTTCTCCACGGCTCTTCC+GGG + Chr2:41672900-41672919 None:intergenic 60.0%
TCCGACATGGGGAGTTGGGA+GGG + Chr2:41673351-41673370 None:intergenic 60.0%
TGGAGGAGGCAAACGGAAGG+TGG + Chr2:41673150-41673169 None:intergenic 60.0%
TTCCGACATGGGGAGTTGGG+AGG + Chr2:41673352-41673371 None:intergenic 60.0%
! TCTATTGGCCTCGTAGGGCG+TGG - Chr2:41673833-41673852 MsG0280008928.01.T01:intron 60.0%
!! AGCACACCAGAGGAGTGTCC+AGG - Chr2:41674429-41674448 MsG0280008928.01.T01:intron 60.0%
!! ATGCCACCTGGGCTTGGTGA+AGG - Chr2:41674667-41674686 MsG0280008928.01.T01:CDS 60.0%
CCCCTCCCAACTCCCCATGT+CGG - Chr2:41673347-41673366 MsG0280008928.01.T01:intron 65.0%
CCGACATGGGGAGTTGGGAG+GGG + Chr2:41673350-41673369 None:intergenic 65.0%
CGACATGGGGAGTTGGGAGG+GGG + Chr2:41673349-41673368 None:intergenic 65.0%
CTAGGTTCCACCGCTGCACC+GGG - Chr2:41673320-41673339 MsG0280008928.01.T01:intron 65.0%
GGACCAGTGAAGTGCAGGGG+CGG + Chr2:41673874-41673893 None:intergenic 65.0%
GGAGTTGGGAGGGGGTTACC+CGG + Chr2:41673341-41673360 None:intergenic 65.0%
TCTCCGCCCCTGCACTTCAC+TGG - Chr2:41673868-41673887 MsG0280008928.01.T01:intron 65.0%
! GACGGGGGGCAACACGGTTT+TGG + Chr2:41673458-41673477 None:intergenic 65.0%
!! TTGGGTGACGGGGGGCAACA+CGG + Chr2:41673464-41673483 None:intergenic 65.0%
GAGGGGGTTACCCGGTGCAG+CGG + Chr2:41673333-41673352 None:intergenic 70.0%
GTGGTCACCCGGAAGAGCCG+TGG - Chr2:41672890-41672909 MsG0280008928.01.T01:intron 70.0%
GGGGTTACCCGGTGCAGCGG+TGG + Chr2:41673330-41673349 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 41670395 41675085 41670395 ID=MsG0280008928.01;Name=MsG0280008928.01
Chr2 mRNA 41670395 41675085 41670395 ID=MsG0280008928.01.T01;Parent=MsG0280008928.01;Name=MsG0280008928.01.T01;_AED=0.43;_eAED=0.49;_QI=0|0.5|0.57|1|0|0|7|386|141
Chr2 exon 41675029 41675085 41675029 ID=MsG0280008928.01.T01:exon:8739;Parent=MsG0280008928.01.T01
Chr2 exon 41674597 41674702 41674597 ID=MsG0280008928.01.T01:exon:8740;Parent=MsG0280008928.01.T01
Chr2 exon 41674462 41674480 41674462 ID=MsG0280008928.01.T01:exon:8741;Parent=MsG0280008928.01.T01
Chr2 exon 41673689 41673728 41673689 ID=MsG0280008928.01.T01:exon:8742;Parent=MsG0280008928.01.T01
Chr2 exon 41673240 41673311 41673240 ID=MsG0280008928.01.T01:exon:8743;Parent=MsG0280008928.01.T01
Chr2 exon 41671030 41671086 41671030 ID=MsG0280008928.01.T01:exon:8744;Parent=MsG0280008928.01.T01
Chr2 exon 41670395 41670855 41670395 ID=MsG0280008928.01.T01:exon:8745;Parent=MsG0280008928.01.T01
Chr2 CDS 41675029 41675085 41675029 ID=MsG0280008928.01.T01:cds;Parent=MsG0280008928.01.T01
Chr2 CDS 41674597 41674702 41674597 ID=MsG0280008928.01.T01:cds;Parent=MsG0280008928.01.T01
Chr2 CDS 41674462 41674480 41674462 ID=MsG0280008928.01.T01:cds;Parent=MsG0280008928.01.T01
Chr2 CDS 41673689 41673728 41673689 ID=MsG0280008928.01.T01:cds;Parent=MsG0280008928.01.T01
Chr2 CDS 41673240 41673311 41673240 ID=MsG0280008928.01.T01:cds;Parent=MsG0280008928.01.T01
Chr2 CDS 41671030 41671086 41671030 ID=MsG0280008928.01.T01:cds;Parent=MsG0280008928.01.T01
Chr2 CDS 41670781 41670855 41670781 ID=MsG0280008928.01.T01:cds;Parent=MsG0280008928.01.T01
Chr2 three_prime_UTR 41670395 41670780 41670395 ID=MsG0280008928.01.T01:three_prime_utr;Parent=MsG0280008928.01.T01
Gene Sequence

>MsG0280008928.01.T01

ATGGCTGTCTACATCGAAGAAGAAGACTACAATGTACTCCCTCCGTCCCTTAATGTAGCAGGAATTCTTGGAAACATGCAAAACCTGTTTGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGAGGGTCCAGAAAGAACTTGCAGCGTATGGGAGAAAACTGACACGACTGGCTGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTAAAGGTAACTCTGTCTGGAAACCAGCAACCTTTACGAACAGAAATTACTGAGGCAGCTATGGAATTGGGATCAGAAAAACTTTCGCTTTTAATCACCGAAGCTTACACGGAAGCACACCAGAGGAGTGTCCAGGGTATGAAGGAAAGGATGAATGATCTTGCACAGAGCTTAGGAATGCCACCTGGGCTTGGTGAAGGATTGAAGTGA

Protein sequence

>MsG0280008928.01.T01

MAVYIEEEDYNVLPPSLNVAGILGNMQNLFETVKKAQMVVQVEAVRVQKELAAYGRKLTRLAEFDGYCEGELVKVTLSGNQQPLRTEITEAAMELGSEKLSLLITEAYTEAHQRSVQGMKERMNDLAQSLGMPPGLGEGLK*