AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012557.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012557.01.T01 MTR_3g026110 88.538 506 15 2 230 692 583 1088 0.0 880
MsG0380012557.01.T01 MTR_3g026110 81.395 215 10 1 1 185 124 338 6.30e-94 314
MsG0380012557.01.T01 MTR_6g015370 34.346 428 189 14 274 677 537 896 2.69e-41 162
MsG0380012557.01.T01 MTR_7g015120 32.319 427 230 13 266 674 511 896 1.04e-34 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012557.01.T01 AT1G74160 48.310 503 199 18 232 691 407 891 1.32e-104 339
MsG0380012557.01.T01 AT1G74160 39.286 140 69 4 10 147 7 132 2.44e-15 80.5
MsG0380012557.01.T01 AT1G74160 48.310 503 199 18 232 691 407 891 1.32e-104 339
MsG0380012557.01.T01 AT1G74160 39.286 140 69 4 10 147 7 132 2.44e-15 80.5
MsG0380012557.01.T01 AT1G74160 48.119 505 197 19 232 691 539 1023 1.71e-103 339
MsG0380012557.01.T01 AT1G74160 39.286 140 69 4 10 147 139 264 2.56e-15 80.5
MsG0380012557.01.T01 AT1G18620 43.050 518 214 18 219 688 350 834 5.87e-89 296
MsG0380012557.01.T01 AT1G18620 43.050 518 214 18 219 688 488 972 5.18e-88 296
MsG0380012557.01.T01 AT1G18620 43.050 518 214 18 219 688 488 972 5.18e-88 296
MsG0380012557.01.T01 AT1G18620 43.050 518 214 18 219 688 488 972 5.18e-88 296
MsG0380012557.01.T01 AT1G18620 43.050 518 214 18 219 688 524 1008 1.54e-87 296
MsG0380012557.01.T01 AT5G15580 34.968 469 250 16 248 690 486 925 1.97e-50 189
MsG0380012557.01.T01 AT3G02170 34.660 427 207 18 285 672 511 904 7.52e-44 170

Find 171 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATGTTGTTTCTATTAT+TGG 0.129342 3:-19695026 None:intergenic
TGTGACTTACCATGGATTTA+TGG 0.187903 3:+19697933 MsG0380012557.01.T01:three_prime_UTR
CGTCACTTTCGACTCAAAAT+TGG 0.224605 3:+19695472 MsG0380012557.01.T01:CDS
TGTTGAGAGACTTATATTTA+AGG 0.236587 3:+19697690 MsG0380012557.01.T01:CDS
GAGACTTATATTTAAGGATT+TGG 0.244796 3:+19697696 MsG0380012557.01.T01:CDS
CGGCGAATCCCTCCGCTTCA+TGG 0.300053 3:-19693820 None:intergenic
CCCGGAGTTATTCCTGGTCT+TGG 0.311360 3:+19697291 MsG0380012557.01.T01:CDS
CCAAGCATCTCTCCCCGTTT+TGG 0.311815 3:+19693693 MsG0380012557.01.T01:CDS
AGGAATAACTCCGGGTTAAT+AGG 0.312669 3:-19697283 None:intergenic
ATCTTTGACCTCATTGTCTC+TGG 0.312991 3:-19696990 None:intergenic
TGAAGTCACTAGTAAGTTTA+CGG 0.313427 3:+19695499 MsG0380012557.01.T01:CDS
CAAAGTTCAGTGAAGAATTC+AGG 0.327848 3:+19695194 MsG0380012557.01.T01:CDS
CAGAAGGCAATCCGGTAAAA+AGG 0.336995 3:+19695307 MsG0380012557.01.T01:CDS
TCTCGATAGGTGGTTGGGTT+TGG 0.341635 3:-19694196 None:intergenic
AACAATCTTCGAAGAATATT+CGG 0.345573 3:+19695066 MsG0380012557.01.T01:CDS
AAATATGTTGATAGGTCTTA+TGG 0.349443 3:+19693861 MsG0380012557.01.T01:CDS
TATTCGGAGGGACGCTTCTC+CGG 0.351175 3:+19695082 MsG0380012557.01.T01:CDS
CCAAGGAGCATCCTTTGATA+TGG 0.352969 3:-19694036 None:intergenic
GATGGTGACCTTTCATTTAA+CGG 0.355534 3:+19697025 MsG0380012557.01.T01:CDS
TCATTTAACGGCACAGGATC+TGG 0.358007 3:+19697037 MsG0380012557.01.T01:CDS
GAGGTAGGACTAGGATGTTC+AGG 0.358567 3:-19695788 None:intergenic
GAGGGAGTGACGGCCAAAAC+GGG 0.374288 3:-19693706 None:intergenic
CTGGATTTGTTTGAGTCTGA+TGG 0.375721 3:-19695287 None:intergenic
ATGAATAGTAGATTGATCTT+TGG 0.380065 3:-19693796 None:intergenic
CTCTTCATCATCTTCTAAGC+AGG 0.390639 3:-19697572 None:intergenic
GAAATTGTTGAGACCTTGAT+TGG 0.395038 3:-19695157 None:intergenic
ATCATCTTCTAAGCAGGGTT+CGG 0.396966 3:-19697566 None:intergenic
CAACACTCGGTGGCCGACTC+TGG 0.397788 3:-19694287 None:intergenic
ATACCTGATTCCTCATTTGC+CGG 0.399227 3:+19694335 MsG0380012557.01.T01:CDS
TGGTGAAGGATTCTATGTAT+AGG 0.402105 3:+19693742 MsG0380012557.01.T01:CDS
TAGGCATTCACTTGATAGTA+AGG 0.404405 3:+19694143 MsG0380012557.01.T01:intron
CACCTATCGAGAAATGTTTA+CGG 0.405748 3:+19694207 MsG0380012557.01.T01:CDS
TATTAACCCGGAGTTATTCC+TGG 0.407113 3:+19697285 MsG0380012557.01.T01:CDS
GGTGAAGGATTCTATGTATA+GGG 0.407831 3:+19693743 MsG0380012557.01.T01:CDS
TGGGATTGTGGAGATCTTGT+AGG 0.409690 3:-19695137 None:intergenic
TAGGTGGTTGGGTTTGGCCT+CGG 0.410858 3:-19694190 None:intergenic
AATTTCAGAATTTGCAACTA+AGG 0.410940 3:+19695763 MsG0380012557.01.T01:CDS
CTGAATTCTTCACTGAACTT+TGG 0.411524 3:-19695193 None:intergenic
TAAGTGAGAAATTAAGAAAA+GGG 0.412206 3:-19697809 None:intergenic
TCAACATCCAACACAATTCC+AGG 0.423260 3:-19697673 None:intergenic
CGAGGGAGTGACGGCCAAAA+CGG 0.426460 3:-19693707 None:intergenic
CGAAAGCAAACTACTTGCCT+TGG 0.428537 3:-19697320 None:intergenic
TTGGTAAATGATATTGTGAT+TGG 0.431496 3:+19697715 MsG0380012557.01.T01:CDS
AGGGACAATCGAGGGCCGTC+TGG 0.436422 3:+19693762 MsG0380012557.01.T01:CDS
CTTCACTATGCTGCGAATTG+AGG 0.440666 3:-19695376 None:intergenic
TCTTCTTCAGCTATTCCAAT+GGG 0.441291 3:+19694989 MsG0380012557.01.T01:intron
TCAGATACGTATCTGTGGTC+TGG 0.441833 3:-19697181 None:intergenic
TTCTTCTTCAGCTATTCCAA+TGG 0.445766 3:+19694988 MsG0380012557.01.T01:intron
CGATGTCGAAATATGTTGAT+AGG 0.446645 3:+19693853 MsG0380012557.01.T01:CDS
ACATTTCAACTACATTCATC+TGG 0.448486 3:+19697256 MsG0380012557.01.T01:CDS
GATAGACTCCTTTAGATCAA+TGG 0.449095 3:-19693913 None:intergenic
GCTCTATAATGCCTTGATAG+TGG 0.450844 3:-19697876 None:intergenic
ACATTTCTCGATAGGTGGTT+GGG 0.451255 3:-19694201 None:intergenic
TCAAACATGGAACGGAAAGT+TGG 0.452585 3:+19697629 MsG0380012557.01.T01:CDS
ATAAGTGAGAAATTAAGAAA+AGG 0.454676 3:-19697810 None:intergenic
GAAATTCTTGTTGCAAAACT+AGG 0.465713 3:+19697430 MsG0380012557.01.T01:CDS
TGCTTTCTCGAAGCAAAATA+CGG 0.465865 3:+19697369 MsG0380012557.01.T01:CDS
CAAACATGGAACGGAAAGTT+GGG 0.471076 3:+19697630 MsG0380012557.01.T01:CDS
TCACCGGCAAATGAGGAATC+AGG 0.473730 3:-19694338 None:intergenic
GAAAGTTGGGAAAATTTCAA+TGG 0.477526 3:+19697643 MsG0380012557.01.T01:CDS
AACATTTCTCGATAGGTGGT+TGG 0.477607 3:-19694202 None:intergenic
AGCATCAGAATCAGCTTCAC+CGG 0.479015 3:+19695331 MsG0380012557.01.T01:CDS
ATAATCTATTTCCACTATCA+AGG 0.479018 3:+19697865 MsG0380012557.01.T01:three_prime_UTR
CCTTGGTCTGCTCCAAGACC+AGG 0.483787 3:-19697303 None:intergenic
AACGGGGAGAGATGCTTGGC+TGG 0.484611 3:-19693689 None:intergenic
TTGTTTGAGTCTGATGGTGG+TGG 0.485328 3:-19695281 None:intergenic
TTCGACATCGGAGGAGGTCG+CGG 0.487722 3:-19693840 None:intergenic
ATAGACTCCTTTAGATCAAT+GGG 0.487778 3:-19693912 None:intergenic
GAGTCTGATGGTGGTGGTGT+AGG 0.491565 3:-19695275 None:intergenic
TTGTGGAGATCTTGTAGGCT+TGG 0.499163 3:-19695132 None:intergenic
CTACCTCCGTTCTCGATGGA+TGG 0.499288 3:+19695804 MsG0380012557.01.T01:CDS
GACCTTTCATTTAACGGCAC+AGG 0.501698 3:+19697031 MsG0380012557.01.T01:CDS
GTTCGGCGCAGAAAACTATT+CGG 0.502067 3:+19697769 MsG0380012557.01.T01:CDS
AAGTGTGCCCATTGATCTAA+AGG 0.503091 3:+19693905 MsG0380012557.01.T01:CDS
TGAGACCTTGATTGGGATTG+TGG 0.504141 3:-19695149 None:intergenic
TCTTCAGCTATTCCAATGGG+TGG 0.507733 3:+19694992 MsG0380012557.01.T01:intron
TTTGGCTGAAACCATGGCTC+AGG 0.508108 3:-19697460 None:intergenic
TTGATAGTAAGGAAGGTTCA+TGG 0.511092 3:+19694154 MsG0380012557.01.T01:CDS
ACATATTTCGACATCGGAGG+AGG 0.511413 3:-19693846 None:intergenic
ACAATGAGGTCAAAGATCAA+TGG 0.512450 3:+19696996 MsG0380012557.01.T01:CDS
GAGTGTTGTAGCAAAACTAA+TGG 0.513117 3:+19694302 MsG0380012557.01.T01:CDS
AACAAATCCAGAAGGCAATC+CGG 0.513184 3:+19695299 MsG0380012557.01.T01:CDS
CCAAAACGGGGAGAGATGCT+TGG 0.513266 3:-19693693 None:intergenic
TACAATCTTACTTTCATACA+AGG 0.516084 3:-19697986 None:intergenic
AGTTTGTTTGGCTGAAACCA+TGG 0.520159 3:-19697466 None:intergenic
TTAAATGAAAGGTCACCATC+AGG 0.521548 3:-19697022 None:intergenic
CCATATCAAAGGATGCTCCT+TGG 0.525975 3:+19694036 MsG0380012557.01.T01:CDS
TTGTAGCAAAACTAATGGCT+TGG 0.526181 3:+19694307 MsG0380012557.01.T01:CDS
CTCTAAGTTTAGAAAGAACT+CGG 0.526372 3:-19693935 None:intergenic
AATTTCAATGGTGAAATACC+TGG 0.533441 3:+19697655 MsG0380012557.01.T01:CDS
TCGAGAACGGAGGTAGGACT+AGG 0.534368 3:-19695797 None:intergenic
CTCCCTCGACCTGCGTGATG+TGG 0.534753 3:+19693722 MsG0380012557.01.T01:CDS
ATCAACTCCAAGGTTGGATG+AGG 0.536290 3:+19695733 MsG0380012557.01.T01:CDS
GAAGAGAAACTTCATCGCCT+TGG 0.542519 3:-19695439 None:intergenic
TTGAGTATCACCGGCAAATG+AGG 0.543880 3:-19694345 None:intergenic
GTCTCATCCTCATCCAACCT+TGG 0.546008 3:-19695740 None:intergenic
TAAAGAAATGTGACTTACCA+TGG 0.548813 3:+19697925 MsG0380012557.01.T01:three_prime_UTR
ACCTTGTTCAGAAGCTTAGA+CGG 0.548905 3:+19697095 MsG0380012557.01.T01:CDS
TCTTCATCATCTTCTAAGCA+GGG 0.551343 3:-19697571 None:intergenic
CATTCACTTGATAGTAAGGA+AGG 0.552959 3:+19694147 MsG0380012557.01.T01:CDS
TTGTGGTGTACTTTCCTACC+CGG 0.554238 3:-19695350 None:intergenic
CTTGATGAAGAAGACTGTTG+TGG 0.555132 3:-19694264 None:intergenic
AGTCGTTTCGAGCTTCGTCA+TGG 0.556068 3:-19697129 None:intergenic
TGCGAGTCAAGTCATCAGTT+CGG 0.556666 3:+19697752 MsG0380012557.01.T01:CDS
CGACCTGCGTGATGTGGTGA+AGG 0.557209 3:+19693728 MsG0380012557.01.T01:CDS
GATCTCCACAATCCCAATCA+AGG 0.558676 3:+19695144 MsG0380012557.01.T01:CDS
TCTTCGCAAGAAGTAAAAGA+TGG 0.560135 3:+19694002 MsG0380012557.01.T01:CDS
GAACCAGAAAATCCACCCAT+TGG 0.560681 3:-19695004 None:intergenic
TCACCACATCACGCAGGTCG+AGG 0.560842 3:-19693725 None:intergenic
AGTCCTACCTCCGTTCTCGA+TGG 0.561469 3:+19695800 MsG0380012557.01.T01:CDS
TCTGAAATACTACTAGCCTC+TGG 0.562851 3:+19697199 MsG0380012557.01.T01:CDS
AGGTAGGACTAGGATGTTCA+GGG 0.566183 3:-19695787 None:intergenic
TCCAAGACCAGGAATAACTC+CGG 0.566567 3:-19697292 None:intergenic
AAATTGTTGAGACCTTGATT+GGG 0.567987 3:-19695156 None:intergenic
CTATTCATGCCATGAAGCGG+AGG 0.568405 3:+19693811 MsG0380012557.01.T01:CDS
GAGTAAGTTTCAGTTGAACC+TGG 0.568727 3:-19694368 None:intergenic
TAGGTTATTCACCTGAGCCA+TGG 0.570852 3:+19697449 MsG0380012557.01.T01:CDS
TGAACCTGGTTGAGTATCAC+CGG 0.573886 3:-19694354 None:intergenic
TGAGTCGAAAGTGACGCTGT+CGG 0.575135 3:-19695465 None:intergenic
CACGCAGGTCGAGGGAGTGA+CGG 0.577580 3:-19693716 None:intergenic
ACCGTCTAAGCTTCTGAACA+AGG 0.578268 3:-19697096 None:intergenic
TTTACTTCTTGCGAAGATCG+TGG 0.578793 3:-19693996 None:intergenic
ATCCTGTGCCGTTAAATGAA+AGG 0.580394 3:-19697033 None:intergenic
TTGATGAAGAAGACTGTTGT+GGG 0.580738 3:-19694263 None:intergenic
GTAGAAATCAACTCCAAGGT+TGG 0.582930 3:+19695727 MsG0380012557.01.T01:intron
CTGCTTAGAAGATGATGAAG+AGG 0.583590 3:+19697573 MsG0380012557.01.T01:CDS
AAGAAGTAAAAGATGGACAT+TGG 0.586093 3:+19694009 MsG0380012557.01.T01:CDS
CCAAGACCAGGAATAACTCC+GGG 0.587313 3:-19697291 None:intergenic
CGTAAACATTTCTCGATAGG+TGG 0.592673 3:-19694206 None:intergenic
TTTGCCGGTGATACTCAACC+AGG 0.594268 3:+19694350 MsG0380012557.01.T01:CDS
CTAAACTTAGAGATGCACCT+TGG 0.595825 3:+19693946 MsG0380012557.01.T01:CDS
CACCACATCACGCAGGTCGA+GGG 0.596283 3:-19693724 None:intergenic
ATCTGGTCATCCTATTAACC+CGG 0.597386 3:+19697273 MsG0380012557.01.T01:CDS
TGTTGTAGAAATCAACTCCA+AGG 0.597617 3:+19695723 MsG0380012557.01.T01:intron
GTATGTATTCCATAAATCCA+TGG 0.602784 3:-19697942 None:intergenic
GCACTTTCTGCATAATGCCA+AGG 0.603955 3:-19693963 None:intergenic
AGGGCCGTCTGGAAAGTCTA+CGG 0.605113 3:+19693773 MsG0380012557.01.T01:CDS
AAAGATCAATGGAAGCCTGA+TGG 0.605718 3:+19697007 MsG0380012557.01.T01:CDS
ACATTGGCATTCCATATCAA+AGG 0.609766 3:+19694025 MsG0380012557.01.T01:CDS
CACCGTAAACATTTCTCGAT+AGG 0.610064 3:-19694209 None:intergenic
TGAAATACCTGGAATTGTGT+TGG 0.610850 3:+19697666 MsG0380012557.01.T01:CDS
TATTCATGCCATGAAGCGGA+GGG 0.620159 3:+19693812 MsG0380012557.01.T01:CDS
CAGAATCAGCTTCACCGGGT+AGG 0.622427 3:+19695336 MsG0380012557.01.T01:CDS
TGTACACCATCCATCGAGAA+CGG 0.623777 3:-19695810 None:intergenic
CTACTATTCATGCCATGAAG+CGG 0.624319 3:+19693808 MsG0380012557.01.T01:CDS
GATTTGTTTGAGTCTGATGG+TGG 0.625182 3:-19695284 None:intergenic
TCAAGAATCCAGAGACAATG+AGG 0.634928 3:+19696982 MsG0380012557.01.T01:CDS
CTTCTTCATCAAGCCAGAGT+CGG 0.635640 3:+19694274 MsG0380012557.01.T01:CDS
GCATCAGAATCAGCTTCACC+GGG 0.638673 3:+19695332 MsG0380012557.01.T01:CDS
AATCTTCGAAGAATATTCGG+AGG 0.639678 3:+19695069 MsG0380012557.01.T01:CDS
TTGTGTGAAGATGTCAAACA+TGG 0.640620 3:+19697616 MsG0380012557.01.T01:CDS
AGGGAGTGACGGCCAAAACG+GGG 0.643218 3:-19693705 None:intergenic
CCTGGTCTTGGAGCAGACCA+AGG 0.643981 3:+19697303 MsG0380012557.01.T01:CDS
TTGGCCGTAGACTTTCCAGA+CGG 0.645720 3:-19693777 None:intergenic
GATTCTAGAAGTTTCTACCA+AGG 0.646167 3:+19695422 MsG0380012557.01.T01:CDS
TGAAGATGTCAAACATGGAA+CGG 0.654540 3:+19697621 MsG0380012557.01.T01:CDS
GAAGATGATGAAGAGGACGA+CGG 0.654862 3:+19697580 MsG0380012557.01.T01:CDS
ATCTTCGAAGAATATTCGGA+GGG 0.656109 3:+19695070 MsG0380012557.01.T01:CDS
CTATCAACATATTTCGACAT+CGG 0.656769 3:-19693852 None:intergenic
CATCCATCGAGAACGGAGGT+AGG 0.656806 3:-19695803 None:intergenic
CAGACTCAAACAAATCCAGA+AGG 0.662864 3:+19695291 MsG0380012557.01.T01:CDS
TCAACATATTTCGACATCGG+AGG 0.665561 3:-19693849 None:intergenic
ATCTCGAAGTAAGAGACCAG+AGG 0.670168 3:-19697215 None:intergenic
GTATTTCAGATACGTATCTG+TGG 0.676545 3:-19697186 None:intergenic
CTATGTATAGGGACAATCGA+GGG 0.693301 3:+19693754 MsG0380012557.01.T01:CDS
AATCCTTCACCACATCACGC+AGG 0.703508 3:-19693731 None:intergenic
TCTATGTATAGGGACAATCG+AGG 0.714156 3:+19693753 MsG0380012557.01.T01:CDS
ACACCATCCATCGAGAACGG+AGG 0.737139 3:-19695807 None:intergenic
GGTAGGACTAGGATGTTCAG+GGG 0.738447 3:-19695786 None:intergenic
ATGGCGCACTTATAGCTCCG+AGG 0.738449 3:+19694173 MsG0380012557.01.T01:CDS
GTCTAAGCTTCTGAACAAGG+TGG 0.762523 3:-19697093 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTAGATGTTTTTAAA+AGG + Chr3:19696519-19696538 MsG0380012557.01.T01:intron 10.0%
!!! TTTTAAAATAGAAAAATGAA+TGG - Chr3:19695607-19695626 None:intergenic 10.0%
!!! TATGATGAGATTTTAAATTT+TGG + Chr3:19695648-19695667 MsG0380012557.01.T01:intron 15.0%
!!! TCTATTTAGGATAAATTTAT+AGG + Chr3:19695894-19695913 MsG0380012557.01.T01:intron 15.0%
!! ATAAGTGAGAAATTAAGAAA+AGG - Chr3:19697813-19697832 None:intergenic 20.0%
!! CATGTAAAAATTACATTTGA+TGG - Chr3:19696719-19696738 None:intergenic 20.0%
!! GAATAATGTAAAAAAGACTA+AGG - Chr3:19696830-19696849 None:intergenic 20.0%
!! TAAGTGAGAAATTAAGAAAA+GGG - Chr3:19697812-19697831 None:intergenic 20.0%
!! TATAGAAATAGCTTATACAT+AGG - Chr3:19696200-19696219 None:intergenic 20.0%
!!! AGATATGTTGTTTCTATTAT+TGG - Chr3:19695029-19695048 None:intergenic 20.0%
!!! ATAATATCAAATTTTGCAGT+TGG + Chr3:19696953-19696972 MsG0380012557.01.T01:intron 20.0%
!!! GTTTTTAAAAGGTTTAATGA+AGG + Chr3:19696530-19696549 MsG0380012557.01.T01:intron 20.0%
! AACAAGAATATGACATTGTT+TGG - Chr3:19696434-19696453 None:intergenic 25.0%
! AACAATCTTCGAAGAATATT+CGG + Chr3:19695066-19695085 MsG0380012557.01.T01:CDS 25.0%
! AATTTCAGAATTTGCAACTA+AGG + Chr3:19695763-19695782 MsG0380012557.01.T01:CDS 25.0%
! ATAATCTATTTCCACTATCA+AGG + Chr3:19697865-19697884 MsG0380012557.01.T01:three_prime_UTR 25.0%
! ATGAATAGTAGATTGATCTT+TGG - Chr3:19693799-19693818 None:intergenic 25.0%
! ATTGTACTTAATATGAAGTG+TGG - Chr3:19695940-19695959 None:intergenic 25.0%
! GAGACTTATATTTAAGGATT+TGG + Chr3:19697696-19697715 MsG0380012557.01.T01:CDS 25.0%
! GTAGTTTATGCTTTCTATTT+AGG + Chr3:19695881-19695900 MsG0380012557.01.T01:intron 25.0%
! TGTGGTCATTAAAGATAATA+TGG - Chr3:19695922-19695941 None:intergenic 25.0%
! TGTTGAGAGACTTATATTTA+AGG + Chr3:19697690-19697709 MsG0380012557.01.T01:CDS 25.0%
! TTGGTAAATGATATTGTGAT+TGG + Chr3:19697715-19697734 MsG0380012557.01.T01:CDS 25.0%
!! AAATATGTTGATAGGTCTTA+TGG + Chr3:19693861-19693880 MsG0380012557.01.T01:CDS 25.0%
!! TAGAAGAAATTGTTTCTTTG+AGG - Chr3:19694874-19694893 None:intergenic 25.0%
!!! AATACTTGTTTTCTTATCAG+TGG - Chr3:19695111-19695130 None:intergenic 25.0%
!!! AGAGCTATGCTTATATTTTT+TGG + Chr3:19697894-19697913 MsG0380012557.01.T01:three_prime_UTR 25.0%
!!! ATGCTTATATTTTTTGGCTA+AGG + Chr3:19697900-19697919 MsG0380012557.01.T01:three_prime_UTR 25.0%
!!! GAACTTTGGTTATTTTCTTT+TGG - Chr3:19695182-19695201 None:intergenic 25.0%
!!! TTTTTCTTTGTGAGTTTGTT+TGG - Chr3:19697481-19697500 None:intergenic 25.0%
AAATTGTTGAGACCTTGATT+GGG - Chr3:19695159-19695178 None:intergenic 30.0%
AAGAAGTAAAAGATGGACAT+TGG + Chr3:19694009-19694028 MsG0380012557.01.T01:CDS 30.0%
AAGATTGCAACAGAAAAAGT+TGG + Chr3:19695229-19695248 MsG0380012557.01.T01:CDS 30.0%
AATTTCAATGGTGAAATACC+TGG + Chr3:19697655-19697674 MsG0380012557.01.T01:CDS 30.0%
ACATTTCAACTACATTCATC+TGG + Chr3:19697256-19697275 MsG0380012557.01.T01:CDS 30.0%
ATAGACTCCTTTAGATCAAT+GGG - Chr3:19693915-19693934 None:intergenic 30.0%
CTATCAACATATTTCGACAT+CGG - Chr3:19693855-19693874 None:intergenic 30.0%
CTCTAAGTTTAGAAAGAACT+CGG - Chr3:19693938-19693957 None:intergenic 30.0%
CTTAAAATACTATGATGCAC+TGG - Chr3:19696898-19696917 None:intergenic 30.0%
GAAAGTTGGGAAAATTTCAA+TGG + Chr3:19697643-19697662 MsG0380012557.01.T01:CDS 30.0%
GAAATTCTTGTTGCAAAACT+AGG + Chr3:19697430-19697449 MsG0380012557.01.T01:CDS 30.0%
GTATGTATTCCATAAATCCA+TGG - Chr3:19697945-19697964 None:intergenic 30.0%
TAAAGAAATGTGACTTACCA+TGG + Chr3:19697925-19697944 MsG0380012557.01.T01:three_prime_UTR 30.0%
TAACCTATGAAGCACAAATA+TGG + Chr3:19696032-19696051 MsG0380012557.01.T01:intron 30.0%
TACAATGCAAATCTATGACA+CGG + Chr3:19695954-19695973 MsG0380012557.01.T01:intron 30.0%
TGAAGTCACTAGTAAGTTTA+CGG + Chr3:19695499-19695518 MsG0380012557.01.T01:CDS 30.0%
TTCACAATCAGTTTAACAAG+AGG + Chr3:19696453-19696472 MsG0380012557.01.T01:intron 30.0%
TTCATAGGTTACAATGTTAC+AGG - Chr3:19696023-19696042 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG + Chr3:19696123-19696142 MsG0380012557.01.T01:intron 30.0%
! ACGATCTGAAATTCTGATTT+AGG - Chr3:19694838-19694857 None:intergenic 30.0%
! AGAAAGCATAAACTACCTTT+CGG - Chr3:19695877-19695896 None:intergenic 30.0%
! GAGTTGATTTCTACAACATT+AGG - Chr3:19695721-19695740 None:intergenic 30.0%
! TGATTTAGGTTTGTAGCTTT+AGG - Chr3:19694824-19694843 None:intergenic 30.0%
!! AACTTTTTCTGTTGCAATCT+TGG - Chr3:19695230-19695249 None:intergenic 30.0%
!! TGGATTTGAGTTTTCACATA+GGG - Chr3:19697164-19697183 None:intergenic 30.0%
!!! ATTAGTTTTGCTACAACACT+CGG - Chr3:19694303-19694322 None:intergenic 30.0%
AAACTACCTTTCGGATCTTT+AGG - Chr3:19695868-19695887 None:intergenic 35.0%
AATCTTCGAAGAATATTCGG+AGG + Chr3:19695069-19695088 MsG0380012557.01.T01:CDS 35.0%
ACAATGAGGTCAAAGATCAA+TGG + Chr3:19696996-19697015 MsG0380012557.01.T01:CDS 35.0%
ACAATGCAAATCTATGACAC+GGG + Chr3:19695955-19695974 MsG0380012557.01.T01:intron 35.0%
ACATTGGCATTCCATATCAA+AGG + Chr3:19694025-19694044 MsG0380012557.01.T01:CDS 35.0%
ACTAGAAGCAATGCAAGAAA+AGG + Chr3:19694734-19694753 MsG0380012557.01.T01:intron 35.0%
ACTGCATATAATCCTGTGTT+GGG + Chr3:19696789-19696808 MsG0380012557.01.T01:intron 35.0%
AGAAAAAGTTGGAGTTAGAG+AGG + Chr3:19695240-19695259 MsG0380012557.01.T01:CDS 35.0%
ATCTTCGAAGAATATTCGGA+GGG + Chr3:19695070-19695089 MsG0380012557.01.T01:CDS 35.0%
CAAAGCTAAAAGAGTTTCCT+AGG + Chr3:19694124-19694143 MsG0380012557.01.T01:intron 35.0%
CAAAGTTCAGTGAAGAATTC+AGG + Chr3:19695194-19695213 MsG0380012557.01.T01:CDS 35.0%
CAATTGCTTTATAGCCTTCA+AGG - Chr3:19695556-19695575 None:intergenic 35.0%
CACCTATCGAGAAATGTTTA+CGG + Chr3:19694207-19694226 MsG0380012557.01.T01:CDS 35.0%
CAGAAAATGCAGATTAAGCA+AGG - Chr3:19696852-19696871 None:intergenic 35.0%
CATACACTTCAAACATCTAC+GGG - Chr3:19696638-19696657 None:intergenic 35.0%
CGATGTCGAAATATGTTGAT+AGG + Chr3:19693853-19693872 MsG0380012557.01.T01:CDS 35.0%
CTAGAAGCAATGCAAGAAAA+GGG + Chr3:19694735-19694754 MsG0380012557.01.T01:intron 35.0%
CTGAATTCTTCACTGAACTT+TGG - Chr3:19695196-19695215 None:intergenic 35.0%
GAAATTGTTGAGACCTTGAT+TGG - Chr3:19695160-19695179 None:intergenic 35.0%
GATAGACTCCTTTAGATCAA+TGG - Chr3:19693916-19693935 None:intergenic 35.0%
GATGGTGACCTTTCATTTAA+CGG + Chr3:19697025-19697044 MsG0380012557.01.T01:CDS 35.0%
GCATACACTTCAAACATCTA+CGG - Chr3:19696639-19696658 None:intergenic 35.0%
GGTGAAGGATTCTATGTATA+GGG + Chr3:19693743-19693762 MsG0380012557.01.T01:CDS 35.0%
GTATTTCAGATACGTATCTG+TGG - Chr3:19697189-19697208 None:intergenic 35.0%
TCTATCTCACTATAAACCGA+AGG - Chr3:19694651-19694670 None:intergenic 35.0%
TCTTCATCATCTTCTAAGCA+GGG - Chr3:19697574-19697593 None:intergenic 35.0%
TCTTCGCAAGAAGTAAAAGA+TGG + Chr3:19694002-19694021 MsG0380012557.01.T01:CDS 35.0%
TCTTCTATCTTCAACAGTCA+AGG + Chr3:19694887-19694906 MsG0380012557.01.T01:intron 35.0%
TCTTCTTCAGCTATTCCAAT+GGG + Chr3:19694989-19695008 MsG0380012557.01.T01:intron 35.0%
TGAAATACCTGGAATTGTGT+TGG + Chr3:19697666-19697685 MsG0380012557.01.T01:CDS 35.0%
TGAAGATGTCAAACATGGAA+CGG + Chr3:19697621-19697640 MsG0380012557.01.T01:CDS 35.0%
TGAATTCAAGCAATCTGGAA+GGG + Chr3:19694689-19694708 MsG0380012557.01.T01:intron 35.0%
TGCTTTCTCGAAGCAAAATA+CGG + Chr3:19697369-19697388 MsG0380012557.01.T01:CDS 35.0%
TGGTGAAGGATTCTATGTAT+AGG + Chr3:19693742-19693761 MsG0380012557.01.T01:CDS 35.0%
TGTCCATATTTGTGCTTCAT+AGG - Chr3:19696038-19696057 None:intergenic 35.0%
TGTGACTTACCATGGATTTA+TGG + Chr3:19697933-19697952 MsG0380012557.01.T01:three_prime_UTR 35.0%
TGTTGTAGAAATCAACTCCA+AGG + Chr3:19695723-19695742 MsG0380012557.01.T01:intron 35.0%
TTAAATGAAAGGTCACCATC+AGG - Chr3:19697025-19697044 None:intergenic 35.0%
TTACTATCAAGTGAATGCCT+AGG - Chr3:19694144-19694163 None:intergenic 35.0%
TTCCAGATTGCTTGAATTCA+AGG - Chr3:19694689-19694708 None:intergenic 35.0%
TTCTTCTTCAGCTATTCCAA+TGG + Chr3:19694988-19695007 MsG0380012557.01.T01:intron 35.0%
TTGAATTCAAGCAATCTGGA+AGG + Chr3:19694688-19694707 MsG0380012557.01.T01:intron 35.0%
TTGATGAAGAAGACTGTTGT+GGG - Chr3:19694266-19694285 None:intergenic 35.0%
TTGTAGCAAAACTAATGGCT+TGG + Chr3:19694307-19694326 MsG0380012557.01.T01:CDS 35.0%
TTGTGTGAAGATGTCAAACA+TGG + Chr3:19697616-19697635 MsG0380012557.01.T01:CDS 35.0%
! ACCTATCGTGATAATGAAAC+CGG + Chr3:19694937-19694956 MsG0380012557.01.T01:intron 35.0%
! CATTCACTTGATAGTAAGGA+AGG + Chr3:19694147-19694166 MsG0380012557.01.T01:CDS 35.0%
! GAGTGTTGTAGCAAAACTAA+TGG + Chr3:19694302-19694321 MsG0380012557.01.T01:CDS 35.0%
! GATTCTAGAAGTTTCTACCA+AGG + Chr3:19695422-19695441 MsG0380012557.01.T01:CDS 35.0%
! GATTTCTCAACAAGTTTTGC+CGG - Chr3:19694959-19694978 None:intergenic 35.0%
! GGATCTTTCAAGGAGATTTT+GGG - Chr3:19694467-19694486 None:intergenic 35.0%
! GTTTTCTTATCAGTGGAAAC+CGG - Chr3:19695104-19695123 None:intergenic 35.0%
! TAGGCATTCACTTGATAGTA+AGG + Chr3:19694143-19694162 MsG0380012557.01.T01:intron 35.0%
! TGGATCTTTCAAGGAGATTT+TGG - Chr3:19694468-19694487 None:intergenic 35.0%
! TTAAGTTGCTTGTCCAAACA+AGG - Chr3:19695981-19696000 None:intergenic 35.0%
! TTGATAGTAAGGAAGGTTCA+TGG + Chr3:19694154-19694173 MsG0380012557.01.T01:CDS 35.0%
!! AATCCATTTTTCGATGCTCT+TGG - Chr3:19694416-19694435 None:intergenic 35.0%
!! CTGGATTTGAGTTTTCACAT+AGG - Chr3:19697165-19697184 None:intergenic 35.0%
!! TTTCCAAGAGCATCGAAAAA+TGG + Chr3:19694410-19694429 MsG0380012557.01.T01:intron 35.0%
!!! CTAGGAAACTCTTTTAGCTT+TGG - Chr3:19694126-19694145 None:intergenic 35.0%
AAAGATCAATGGAAGCCTGA+TGG + Chr3:19697007-19697026 MsG0380012557.01.T01:CDS 40.0%
AACAAATCCAGAAGGCAATC+CGG + Chr3:19695299-19695318 MsG0380012557.01.T01:CDS 40.0%
AACATTTCTCGATAGGTGGT+TGG - Chr3:19694205-19694224 None:intergenic 40.0%
AAGTGTGCCCATTGATCTAA+AGG + Chr3:19693905-19693924 MsG0380012557.01.T01:CDS 40.0%
ACATTTCTCGATAGGTGGTT+GGG - Chr3:19694204-19694223 None:intergenic 40.0%
ACCTTGTTCAGAAGCTTAGA+CGG + Chr3:19697095-19697114 MsG0380012557.01.T01:CDS 40.0%
AGAACAAGTTCCAAACGTGT+TGG + Chr3:19694779-19694798 MsG0380012557.01.T01:intron 40.0%
AGATGAATCCAGGTTCTCAA+TGG - Chr3:19694628-19694647 None:intergenic 40.0%
AGGAATAACTCCGGGTTAAT+AGG - Chr3:19697286-19697305 None:intergenic 40.0%
ATACCTGATTCCTCATTTGC+CGG + Chr3:19694335-19694354 MsG0380012557.01.T01:CDS 40.0%
ATCATCTTCTAAGCAGGGTT+CGG - Chr3:19697569-19697588 None:intergenic 40.0%
ATCTGGTCATCCTATTAACC+CGG + Chr3:19697273-19697292 MsG0380012557.01.T01:CDS 40.0%
ATCTTTGACCTCATTGTCTC+TGG - Chr3:19696993-19697012 None:intergenic 40.0%
CAAACATGGAACGGAAAGTT+GGG + Chr3:19697630-19697649 MsG0380012557.01.T01:CDS 40.0%
CAACGTCTAATGTCAAGTGT+TGG + Chr3:19696154-19696173 MsG0380012557.01.T01:intron 40.0%
CACCGTAAACATTTCTCGAT+AGG - Chr3:19694212-19694231 None:intergenic 40.0%
CAGACTCAAACAAATCCAGA+AGG + Chr3:19695291-19695310 MsG0380012557.01.T01:CDS 40.0%
CGTAAACATTTCTCGATAGG+TGG - Chr3:19694209-19694228 None:intergenic 40.0%
CTAAACTTAGAGATGCACCT+TGG + Chr3:19693946-19693965 MsG0380012557.01.T01:CDS 40.0%
CTACTATTCATGCCATGAAG+CGG + Chr3:19693808-19693827 MsG0380012557.01.T01:CDS 40.0%
CTATGTATAGGGACAATCGA+GGG + Chr3:19693754-19693773 MsG0380012557.01.T01:CDS 40.0%
CTCTTCATCATCTTCTAAGC+AGG - Chr3:19697575-19697594 None:intergenic 40.0%
CTGCTTAGAAGATGATGAAG+AGG + Chr3:19697573-19697592 MsG0380012557.01.T01:CDS 40.0%
CTTGATGAAGAAGACTGTTG+TGG - Chr3:19694267-19694286 None:intergenic 40.0%
GACCTTGAATTCAAGCAATC+TGG + Chr3:19694684-19694703 MsG0380012557.01.T01:intron 40.0%
GACTGCATATAATCCTGTGT+TGG + Chr3:19696788-19696807 MsG0380012557.01.T01:intron 40.0%
GAGTAAGTTTCAGTTGAACC+TGG - Chr3:19694371-19694390 None:intergenic 40.0%
GCTCTATAATGCCTTGATAG+TGG - Chr3:19697879-19697898 None:intergenic 40.0%
GGAAACTTTGAACTAGAGAC+CGG - Chr3:19694530-19694549 None:intergenic 40.0%
GTAGAAATCAACTCCAAGGT+TGG + Chr3:19695727-19695746 MsG0380012557.01.T01:intron 40.0%
TATGCACATCGTGAACTAGT+CGG + Chr3:19696654-19696673 MsG0380012557.01.T01:intron 40.0%
TATTAACCCGGAGTTATTCC+TGG + Chr3:19697285-19697304 MsG0380012557.01.T01:CDS 40.0%
TCAAACATGGAACGGAAAGT+TGG + Chr3:19697629-19697648 MsG0380012557.01.T01:CDS 40.0%
TCAACATATTTCGACATCGG+AGG - Chr3:19693852-19693871 None:intergenic 40.0%
TCAACATCCAACACAATTCC+AGG - Chr3:19697676-19697695 None:intergenic 40.0%
TCAAGAATCCAGAGACAATG+AGG + Chr3:19696982-19697001 MsG0380012557.01.T01:CDS 40.0%
TCTATGTATAGGGACAATCG+AGG + Chr3:19693753-19693772 MsG0380012557.01.T01:CDS 40.0%
TGCTTTATAGCCTTCAAGGA+GGG - Chr3:19695552-19695571 None:intergenic 40.0%
TTGCTTTATAGCCTTCAAGG+AGG - Chr3:19695553-19695572 None:intergenic 40.0%
TTTACTTCTTGCGAAGATCG+TGG - Chr3:19693999-19694018 None:intergenic 40.0%
! AAGCACTTGTGAGACTTTTC+AGG - Chr3:19696377-19696396 None:intergenic 40.0%
! AGTTTGTTTGGCTGAAACCA+TGG - Chr3:19697469-19697488 None:intergenic 40.0%
! ATCCTGTGCCGTTAAATGAA+AGG - Chr3:19697036-19697055 None:intergenic 40.0%
! CGTCACTTTCGACTCAAAAT+TGG + Chr3:19695472-19695491 MsG0380012557.01.T01:CDS 40.0%
! CTGGATTTGTTTGAGTCTGA+TGG - Chr3:19695290-19695309 None:intergenic 40.0%
! GATTTGTTTGAGTCTGATGG+TGG - Chr3:19695287-19695306 None:intergenic 40.0%
! TCTGAAATACTACTAGCCTC+TGG + Chr3:19697199-19697218 MsG0380012557.01.T01:CDS 40.0%
! TTCTGATGCTGCCTTTTTAC+CGG - Chr3:19695321-19695340 None:intergenic 40.0%
!! ATTCCAATGGGTGGATTTTC+TGG + Chr3:19695001-19695020 MsG0380012557.01.T01:CDS 40.0%
!! TAAGAAGCTTTTGAGCACTG+AGG - Chr3:19697504-19697523 None:intergenic 40.0%
!! TGAGATAGAGAAGCGTTTGA+AGG + Chr3:19694662-19694681 MsG0380012557.01.T01:intron 40.0%
!! TTCTGAGGTGGTTATGAAAC+CGG + Chr3:19694508-19694527 MsG0380012557.01.T01:intron 40.0%
!!! AGAGACTTTTTCATTCGAGG+TGG - Chr3:19694241-19694260 None:intergenic 40.0%
!!! CTTTTAGCTTTGGAGCAGAT+CGG - Chr3:19694116-19694135 None:intergenic 40.0%
!!! GCTAGAGACTTTTTCATTCG+AGG - Chr3:19694244-19694263 None:intergenic 40.0%
AAACCGAAGGAGATGAATCC+AGG - Chr3:19694638-19694657 None:intergenic 45.0%
ACAAAGCTCCATTGAGAACC+TGG + Chr3:19694617-19694636 MsG0380012557.01.T01:intron 45.0%
ACATATTTCGACATCGGAGG+AGG - Chr3:19693849-19693868 None:intergenic 45.0%
ACCATACACGACACTAACAC+AGG + Chr3:19696057-19696076 MsG0380012557.01.T01:intron 45.0%
ACCGTCTAAGCTTCTGAACA+AGG - Chr3:19697099-19697118 None:intergenic 45.0%
ACTTCGACTTCCAACACGTT+TGG - Chr3:19694792-19694811 None:intergenic 45.0%
AGCATCAGAATCAGCTTCAC+CGG + Chr3:19695331-19695350 MsG0380012557.01.T01:CDS 45.0%
AGGTAGGACTAGGATGTTCA+GGG - Chr3:19695790-19695809 None:intergenic 45.0%
ATATAATCCTGTGTTGGGCG+TGG + Chr3:19696794-19696813 MsG0380012557.01.T01:intron 45.0%
ATCAACTCCAAGGTTGGATG+AGG + Chr3:19695733-19695752 MsG0380012557.01.T01:CDS 45.0%
ATCTCGAAGTAAGAGACCAG+AGG - Chr3:19697218-19697237 None:intergenic 45.0%
CAGAAGGCAATCCGGTAAAA+AGG + Chr3:19695307-19695326 MsG0380012557.01.T01:CDS 45.0%
CAGACACCTAAAGATCCGAA+AGG + Chr3:19695859-19695878 MsG0380012557.01.T01:intron 45.0%
CCATATCAAAGGATGCTCCT+TGG + Chr3:19694036-19694055 MsG0380012557.01.T01:CDS 45.0%
CGAAAGCAAACTACTTGCCT+TGG - Chr3:19697323-19697342 None:intergenic 45.0%
CTTCACTATGCTGCGAATTG+AGG - Chr3:19695379-19695398 None:intergenic 45.0%
CTTCCATCGTAAGCTAACCA+AGG - Chr3:19694056-19694075 None:intergenic 45.0%
CTTCTTCATCAAGCCAGAGT+CGG + Chr3:19694274-19694293 MsG0380012557.01.T01:CDS 45.0%
GAACCAGAAAATCCACCCAT+TGG - Chr3:19695007-19695026 None:intergenic 45.0%
GAACCTGGATTCATCTCCTT+CGG + Chr3:19694632-19694651 MsG0380012557.01.T01:intron 45.0%
GAAGAGAAACTTCATCGCCT+TGG - Chr3:19695442-19695461 None:intergenic 45.0%
GAAGATGATGAAGAGGACGA+CGG + Chr3:19697580-19697599 MsG0380012557.01.T01:CDS 45.0%
GACCTTTCATTTAACGGCAC+AGG + Chr3:19697031-19697050 MsG0380012557.01.T01:CDS 45.0%
GATCTCCACAATCCCAATCA+AGG + Chr3:19695144-19695163 MsG0380012557.01.T01:CDS 45.0%
GCACTTTCTGCATAATGCCA+AGG - Chr3:19693966-19693985 None:intergenic 45.0%
GGAGAGTTAGTAACTCGAAG+CGG - Chr3:19694446-19694465 None:intergenic 45.0%
GTCTAAGCTTCTGAACAAGG+TGG - Chr3:19697096-19697115 None:intergenic 45.0%
GTTCGGCGCAGAAAACTATT+CGG + Chr3:19697769-19697788 MsG0380012557.01.T01:CDS 45.0%
TAGGTTATTCACCTGAGCCA+TGG + Chr3:19697449-19697468 MsG0380012557.01.T01:CDS 45.0%
TATTCATGCCATGAAGCGGA+GGG + Chr3:19693812-19693831 MsG0380012557.01.T01:CDS 45.0%
TCAGATACGTATCTGTGGTC+TGG - Chr3:19697184-19697203 None:intergenic 45.0%
TCATTTAACGGCACAGGATC+TGG + Chr3:19697037-19697056 MsG0380012557.01.T01:CDS 45.0%
TCCAAGACCAGGAATAACTC+CGG - Chr3:19697295-19697314 None:intergenic 45.0%
TCTTCAGCTATTCCAATGGG+TGG + Chr3:19694992-19695011 MsG0380012557.01.T01:intron 45.0%
TGAACCTGGTTGAGTATCAC+CGG - Chr3:19694357-19694376 None:intergenic 45.0%
TGAGACCTTGATTGGGATTG+TGG - Chr3:19695152-19695171 None:intergenic 45.0%
TGCGAGTCAAGTCATCAGTT+CGG + Chr3:19697752-19697771 MsG0380012557.01.T01:CDS 45.0%
TGGGATTGTGGAGATCTTGT+AGG - Chr3:19695140-19695159 None:intergenic 45.0%
TGTACACCATCCATCGAGAA+CGG - Chr3:19695813-19695832 None:intergenic 45.0%
TTGAGTATCACCGGCAAATG+AGG - Chr3:19694348-19694367 None:intergenic 45.0%
TTGTGGAGATCTTGTAGGCT+TGG - Chr3:19695135-19695154 None:intergenic 45.0%
TTGTGGTGTACTTTCCTACC+CGG - Chr3:19695353-19695372 None:intergenic 45.0%
! AGTTTTGCTACAACACTCGG+TGG - Chr3:19694300-19694319 None:intergenic 45.0%
! CTTTTTACCGGATTGCCTTC+TGG - Chr3:19695309-19695328 None:intergenic 45.0%
! GATGCACTGGTCGAATATTC+AGG - Chr3:19696885-19696904 None:intergenic 45.0%
! GCCGGTTTCATTATCACGAT+AGG - Chr3:19694941-19694960 None:intergenic 45.0%
! GCTGCGAATTGAGGATTTTG+TGG - Chr3:19695370-19695389 None:intergenic 45.0%
! TTTGCATCATGCTGCTTCCA+TGG - Chr3:19694566-19694585 None:intergenic 45.0%
! TTTTTCATTCGAGGTGGAGG+TGG - Chr3:19694235-19694254 None:intergenic 45.0%
!! CCAAGGAGCATCCTTTGATA+TGG - Chr3:19694039-19694058 None:intergenic 45.0%
!! TAAGCAGGGTTCGGTTTTCT+TGG - Chr3:19697560-19697579 None:intergenic 45.0%
!! TTGTTTGAGTCTGATGGTGG+TGG - Chr3:19695284-19695303 None:intergenic 45.0%
!!! GACTTTTTCATTCGAGGTGG+AGG - Chr3:19694238-19694257 None:intergenic 45.0%
AATCCTTCACCACATCACGC+AGG - Chr3:19693734-19693753 None:intergenic 50.0%
ACCTCAGAATTCTTCCGCCT+CGG - Chr3:19694497-19694516 None:intergenic 50.0%
AGTCGTTTCGAGCTTCGTCA+TGG - Chr3:19697132-19697151 None:intergenic 50.0%
CAGTCAAAGTCCCTCCTTGA+AGG + Chr3:19695539-19695558 MsG0380012557.01.T01:intron 50.0%
CCAAGACCAGGAATAACTCC+GGG - Chr3:19697294-19697313 None:intergenic 50.0%
CGGGGAAGTTGGATCTTTCA+AGG - Chr3:19694477-19694496 None:intergenic 50.0%
CTATTCATGCCATGAAGCGG+AGG + Chr3:19693811-19693830 MsG0380012557.01.T01:CDS 50.0%
GAGGTAGGACTAGGATGTTC+AGG - Chr3:19695791-19695810 None:intergenic 50.0%
GCATCAGAATCAGCTTCACC+GGG + Chr3:19695332-19695351 MsG0380012557.01.T01:CDS 50.0%
GCCTGTGTTAGTGTCGTGTA+TGG - Chr3:19696061-19696080 None:intergenic 50.0%
GGTAGGACTAGGATGTTCAG+GGG - Chr3:19695789-19695808 None:intergenic 50.0%
GTCTCATCCTCATCCAACCT+TGG - Chr3:19695743-19695762 None:intergenic 50.0%
TAACACAGGCACGTCGACAA+CGG + Chr3:19696071-19696090 MsG0380012557.01.T01:intron 50.0%
TCACCGGCAAATGAGGAATC+AGG - Chr3:19694341-19694360 None:intergenic 50.0%
TCTCGATAGGTGGTTGGGTT+TGG - Chr3:19694199-19694218 None:intergenic 50.0%
TGAAAGATCCAACTTCCCCG+AGG + Chr3:19694477-19694496 MsG0380012557.01.T01:intron 50.0%
TGAGTCGAAAGTGACGCTGT+CGG - Chr3:19695468-19695487 None:intergenic 50.0%
TTGGCCGTAGACTTTCCAGA+CGG - Chr3:19693780-19693799 None:intergenic 50.0%
TTTGCCGGTGATACTCAACC+AGG + Chr3:19694350-19694369 MsG0380012557.01.T01:CDS 50.0%
TTTGGCTGAAACCATGGCTC+AGG - Chr3:19697463-19697482 None:intergenic 50.0%
! GGTGTCTGCATTTGTTGCGA+TGG - Chr3:19695847-19695866 None:intergenic 50.0%
!! GCTCCTTGGTTAGCTTACGA+TGG + Chr3:19694050-19694069 MsG0380012557.01.T01:intron 50.0%
!! TCTATGACACGGGCCTTGTT+TGG + Chr3:19695965-19695984 MsG0380012557.01.T01:intron 50.0%
!! TTCCATGGTGCTGGTTCAAG+CGG - Chr3:19694551-19694570 None:intergenic 50.0%
AAGATCCAACTTCCCCGAGG+CGG + Chr3:19694480-19694499 MsG0380012557.01.T01:intron 55.0%
ACACCATCCATCGAGAACGG+AGG - Chr3:19695810-19695829 None:intergenic 55.0%
AGGGCCGTCTGGAAAGTCTA+CGG + Chr3:19693773-19693792 MsG0380012557.01.T01:CDS 55.0%
AGTCCTACCTCCGTTCTCGA+TGG + Chr3:19695800-19695819 MsG0380012557.01.T01:CDS 55.0%
ATGGCGCACTTATAGCTCCG+AGG + Chr3:19694173-19694192 MsG0380012557.01.T01:CDS 55.0%
CAGAATCAGCTTCACCGGGT+AGG + Chr3:19695336-19695355 MsG0380012557.01.T01:CDS 55.0%
CATAATGCCACGCCCAACAC+AGG - Chr3:19696804-19696823 None:intergenic 55.0%
CATCCATCGAGAACGGAGGT+AGG - Chr3:19695806-19695825 None:intergenic 55.0%
CCAAAACGGGGAGAGATGCT+TGG - Chr3:19693696-19693715 None:intergenic 55.0%
CCCGGAGTTATTCCTGGTCT+TGG + Chr3:19697291-19697310 MsG0380012557.01.T01:CDS 55.0%
CCTCAGAATTCTTCCGCCTC+GGG - Chr3:19694496-19694515 None:intergenic 55.0%
CTACCTCCGTTCTCGATGGA+TGG + Chr3:19695804-19695823 MsG0380012557.01.T01:CDS 55.0%
CTCAGAATTCTTCCGCCTCG+GGG - Chr3:19694495-19694514 None:intergenic 55.0%
TAGGTGGTTGGGTTTGGCCT+CGG - Chr3:19694193-19694212 None:intergenic 55.0%
TATTCGGAGGGACGCTTCTC+CGG + Chr3:19695082-19695101 MsG0380012557.01.T01:CDS 55.0%
TCGAGAACGGAGGTAGGACT+AGG - Chr3:19695800-19695819 None:intergenic 55.0%
TTCCGCTTGAACCAGCACCA+TGG + Chr3:19694546-19694565 MsG0380012557.01.T01:intron 55.0%
! CCAAGCATCTCTCCCCGTTT+TGG + Chr3:19693693-19693712 MsG0380012557.01.T01:CDS 55.0%
! GAGGCGGAAGAATTCTGAGG+TGG + Chr3:19694496-19694515 MsG0380012557.01.T01:intron 55.0%
! TCATGCTGCTTCCATGGTGC+TGG - Chr3:19694560-19694579 None:intergenic 55.0%
!! GAGTCTGATGGTGGTGGTGT+AGG - Chr3:19695278-19695297 None:intergenic 55.0%
AACGGGGAGAGATGCTTGGC+TGG - Chr3:19693692-19693711 None:intergenic 60.0%
AGGGAGTGACGGCCAAAACG+GGG - Chr3:19693708-19693727 None:intergenic 60.0%
CACCACATCACGCAGGTCGA+GGG - Chr3:19693727-19693746 None:intergenic 60.0%
CCCGAGGCGGAAGAATTCTG+AGG + Chr3:19694493-19694512 MsG0380012557.01.T01:intron 60.0%
CCTTGGTCTGCTCCAAGACC+AGG - Chr3:19697306-19697325 None:intergenic 60.0%
CGACCTGCGTGATGTGGTGA+AGG + Chr3:19693728-19693747 MsG0380012557.01.T01:CDS 60.0%
CGAGGGAGTGACGGCCAAAA+CGG - Chr3:19693710-19693729 None:intergenic 60.0%
GAGGGAGTGACGGCCAAAAC+GGG - Chr3:19693709-19693728 None:intergenic 60.0%
TCACCACATCACGCAGGTCG+AGG - Chr3:19693728-19693747 None:intergenic 60.0%
TTCGACATCGGAGGAGGTCG+CGG - Chr3:19693843-19693862 None:intergenic 60.0%
TTCTTCCGCCTCGGGGAAGT+TGG - Chr3:19694488-19694507 None:intergenic 60.0%
!! CCTGGTCTTGGAGCAGACCA+AGG + Chr3:19697303-19697322 MsG0380012557.01.T01:CDS 60.0%
AGGGACAATCGAGGGCCGTC+TGG + Chr3:19693762-19693781 MsG0380012557.01.T01:CDS 65.0%
CACGCAGGTCGAGGGAGTGA+CGG - Chr3:19693719-19693738 None:intergenic 65.0%
CGGCGAATCCCTCCGCTTCA+TGG - Chr3:19693823-19693842 None:intergenic 65.0%
CTCCCTCGACCTGCGTGATG+TGG + Chr3:19693722-19693741 MsG0380012557.01.T01:CDS 65.0%
! CAACACTCGGTGGCCGACTC+TGG - Chr3:19694290-19694309 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 19693684 19698007 19693684 ID=MsG0380012557.01;Name=MsG0380012557.01
Chr3 mRNA 19693684 19698007 19693684 ID=MsG0380012557.01.T01;Parent=MsG0380012557.01;Name=MsG0380012557.01.T01;_AED=0.31;_eAED=0.33;_QI=0|0|0.2|1|1|1|5|209|692
Chr3 exon 19696972 19698007 19696972 ID=MsG0380012557.01.T01:exon:3791;Parent=MsG0380012557.01.T01
Chr3 exon 19695731 19695827 19695731 ID=MsG0380012557.01.T01:exon:3790;Parent=MsG0380012557.01.T01
Chr3 exon 19694999 19695520 19694999 ID=MsG0380012557.01.T01:exon:3789;Parent=MsG0380012557.01.T01
Chr3 exon 19694146 19694404 19694146 ID=MsG0380012557.01.T01:exon:3788;Parent=MsG0380012557.01.T01
Chr3 exon 19693684 19694057 19693684 ID=MsG0380012557.01.T01:exon:3787;Parent=MsG0380012557.01.T01
Chr3 CDS 19693684 19694057 19693684 ID=MsG0380012557.01.T01:cds;Parent=MsG0380012557.01.T01
Chr3 CDS 19694146 19694404 19694146 ID=MsG0380012557.01.T01:cds;Parent=MsG0380012557.01.T01
Chr3 CDS 19694999 19695520 19694999 ID=MsG0380012557.01.T01:cds;Parent=MsG0380012557.01.T01
Chr3 CDS 19695731 19695827 19695731 ID=MsG0380012557.01.T01:cds;Parent=MsG0380012557.01.T01
Chr3 CDS 19696972 19697798 19696972 ID=MsG0380012557.01.T01:cds;Parent=MsG0380012557.01.T01
Chr3 three_prime_UTR 19697799 19698007 19697799 ID=MsG0380012557.01.T01:three_prime_utr;Parent=MsG0380012557.01.T01
Gene Sequence

>MsG0380012557.01.T01

ATGAACCAGCCAAGCATCTCTCCCCGTTTTGGCCGTCACTCCCTCGACCTGCGTGATGTGGTGAAGGATTCTATGTATAGGGACAATCGAGGGCCGTCTGGAAAGTCTACGGCCAAAGATCAATCTACTATTCATGCCATGAAGCGGAGGGATTCGCCGCGACCTCCTCCGATGTCGAAATATGTTGATAGGTCTTATGGAGTTGAAATAGATGAAAAGCAAAGTGTGCCCATTGATCTAAAGGAGTCTATCCGAGTTCTTTCTAAACTTAGAGATGCACCTTGGCATTATGCAGAAAGTGCTAGAGAAAATCCACGATCTTCGCAAGAAGTAAAAGATGGACATTGGCATTCCATATCAAAGGATGCTCCTTGGCATTCACTTGATAGTAAGGAAGGTTCATGGCGCACTTATAGCTCCGAGGCCAAACCCAACCACCTATCGAGAAATGTTTACGGTGCCACCTCCACCTCGAATGAAAAAGTCTCTAGCCCACAACAGTCTTCTTCATCAAGCCAGAGTCGGCCACCGAGTGTTGTAGCAAAACTAATGGCTTGGAAGCAATACCTGATTCCTCATTTGCCGGTGATACTCAACCAGGTTCAACTGAAACTTACTCAGCTCAAGATAACACTATTCCAATGGGTGGATTTTCTGGTTCCAATAATAGAAACAACATATCTTCTACTCAATAGCAAAGAACAATCTTCGAAGAATATTCGGAGGGACGCTTCTCCGGTTTCCACTGATAAGAAAACAAGTATTACCAAGCCTACAAGATCTCCACAATCCCAATCAAGGTCTCAACAATTTCCAAAAGAAAATAACCAAAGTTCAGTGAAGAATTCAGGATCAGTGAGTCCAAGATTGCAACAGAAAAAGTTGGAGTTAGAGAGGCGATCTCGTGTGCCTACACCACCACCATCAGACTCAAACAAATCCAGAAGGCAATCCGGTAAAAAGGCAGCATCAGAATCAGCTTCACCGGGTAGGAAAGTACACCACAAAATCCTCAATTCGCAGCATAGTGAAGAGCAACTGAGTGAGATAAGCAATGATTCTAGAAGTTTCTACCAAGGCGATGAAGTTTCTCTTCAATCCGACAGCGTCACTTTCGACTCAAAATTGGATATTGAAGTCACTAGTAAGTTTACGAAATCAACTCCAAGGTTGGATGAGGATGAGACAATTTCAGAATTTGCAACTAAGGCCCCTGAACATCCTAGTCCTACCTCCGTTCTCGATGGATGGTTTGGAAATGATCAAGAATCCAGAGACAATGAGGTCAAAGATCAATGGAAGCCTGATGGTGACCTTTCATTTAACGGCACAGGATCTGGAGAGATTAATCGCAAGAAATTACAAAGCATAGACCACCTTGTTCAGAAGCTTAGACGGTTGAACTCAAGCCATGACGAAGCTCGAAACGACTACATTGCTTCCCTATGTGAAAACTCAAATCCAGACCACAGATACGTATCTGAAATACTACTAGCCTCTGGTCTCTTACTTCGAGATCTGAGTTCTGAATTTCTAACATTTCAACTACATTCATCTGGTCATCCTATTAACCCGGAGTTATTCCTGGTCTTGGAGCAGACCAAGGCAAGTAGTTTGCTTTCGAAAGAAGAAAGCAGCTTTGAAAAAGCTGCTTTCTCGAAGCAAAATACGGAGAAATTTCATCGAAAACTCATCTTTGATGCTGTGAACGAAATTCTTGTTGCAAAACTAGGTTATTCACCTGAGCCATGGTTTCAGCCAAACAAACTCACAAAGAAAAACCTCAGTGCTCAAAAGCTTCTTAAAGAACTATGCTTTGAGATAGAGAAAGTTCAAGCCAAGAAAACCGAACCCTGCTTAGAAGATGATGAAGAGGACGACGGTTTGAAGAGTTTGTTGTGTGAAGATGTCAAACATGGAACGGAAAGTTGGGAAAATTTCAATGGTGAAATACCTGGAATTGTGTTGGATGTTGAGAGACTTATATTTAAGGATTTGGTAAATGATATTGTGATTGGTGAAGCAGCTAGCTTGCGAGTCAAGTCATCAGTTCGGCGCAGAAAACTATTCGGAAAGTAG
Protein sequence

>MsG0380012557.01.T01

MNQPSISPRFGRHSLDLRDVVKDSMYRDNRGPSGKSTAKDQSTIHAMKRRDSPRPPPMSKYVDRSYGVEIDEKQSVPIDLKESIRVLSKLRDAPWHYAESARENPRSSQEVKDGHWHSISKDAPWHSLDSKEGSWRTYSSEAKPNHLSRNVYGATSTSNEKVSSPQQSSSSSQSRPPSVVAKLMAWKQYLIPHLPVILNQVQLKLTQLKITLFQWVDFLVPIIETTYLLLNSKEQSSKNIRRDASPVSTDKKTSITKPTRSPQSQSRSQQFPKENNQSSVKNSGSVSPRLQQKKLELERRSRVPTPPPSDSNKSRRQSGKKAASESASPGRKVHHKILNSQHSEEQLSEISNDSRSFYQGDEVSLQSDSVTFDSKLDIEVTSKFTKSTPRLDEDETISEFATKAPEHPSPTSVLDGWFGNDQESRDNEVKDQWKPDGDLSFNGTGSGEINRKKLQSIDHLVQKLRRLNSSHDEARNDYIASLCENSNPDHRYVSEILLASGLLLRDLSSEFLTFQLHSSGHPINPELFLVLEQTKASSLLSKEESSFEKAAFSKQNTEKFHRKLIFDAVNEILVAKLGYSPEPWFQPNKLTKKNLSAQKLLKELCFEIEKVQAKKTEPCLEDDEEDDGLKSLLCEDVKHGTESWENFNGEIPGIVLDVERLIFKDLVNDIVIGEAASLRVKSSVRRRKLFGK*