AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002491.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002491.01.T01 MTR_5g022730 98.701 154 2 0 3 156 2 155 4.62e-111 312
MsG0180002491.01.T01 MTR_5g022710 95.455 154 7 0 3 156 2 155 4.87e-100 284
MsG0180002491.01.T01 MTR_7g021400 86.538 156 21 0 1 156 1 156 2.55e-92 265
MsG0180002491.01.T01 MTR_7g094150 85.897 156 22 0 1 156 1 156 9.20e-91 261
MsG0180002491.01.T01 MTR_7g094170 84.615 156 24 0 1 156 1 156 2.19e-89 257
MsG0180002491.01.T01 MTR_7g021380 82.692 156 27 0 1 156 1 156 2.10e-85 247
MsG0180002491.01.T01 MTR_4g032400 78.205 156 33 1 2 156 8 163 5.13e-85 246
MsG0180002491.01.T01 MTR_3g110048 75.949 158 36 1 1 156 1 158 6.28e-85 246
MsG0180002491.01.T01 MTR_7g094120 74.522 157 38 1 2 156 3 159 2.12e-83 242
MsG0180002491.01.T01 MTR_4g032450 73.248 157 41 1 1 156 19 175 2.85e-83 243
MsG0180002491.01.T01 MTR_7g094280 72.785 158 41 2 1 156 1 158 1.96e-79 232
MsG0180002491.01.T01 MTR_8g056060 73.248 157 41 1 1 156 1 157 6.19e-79 231
MsG0180002491.01.T01 MTR_5g085030 72.727 154 41 1 3 155 2 155 4.03e-78 229
MsG0180002491.01.T01 MTR_8g468480 70.323 155 45 1 3 156 2 156 1.01e-76 225
MsG0180002491.01.T01 MTR_7g094310 69.620 158 36 3 1 156 1 148 6.90e-72 213
MsG0180002491.01.T01 MTR_4g032510 68.153 157 42 3 2 156 3 153 1.37e-70 209
MsG0180002491.01.T01 MTR_4g032460 71.613 155 37 2 3 156 2 150 8.94e-70 207
MsG0180002491.01.T01 MTR_4g032500 66.026 156 46 2 2 156 3 152 3.36e-69 206
MsG0180002491.01.T01 MTR_4g033455 59.740 154 62 0 3 156 7 160 2.25e-64 194
MsG0180002491.01.T01 MTR_5g082340 65.806 155 41 2 3 156 2 145 1.64e-63 191
MsG0180002491.01.T01 MTR_4g017860 54.359 195 46 3 5 156 26 220 5.52e-63 193
MsG0180002491.01.T01 MTR_1g099870 84.314 102 14 1 57 156 2 103 9.74e-59 178
MsG0180002491.01.T01 MTR_4g021390 58.065 155 62 1 2 156 4 155 4.23e-58 178
MsG0180002491.01.T01 MTR_4g033460 59.286 140 57 0 3 142 7 146 9.20e-58 181
MsG0180002491.01.T01 MTR_4g033460 59.140 93 30 1 41 133 161 245 5.88e-30 109
MsG0180002491.01.T01 MTR_8g089730 69.106 123 21 1 34 156 1 106 1.49e-49 155
MsG0180002491.01.T01 MTR_7g094320 56.688 157 27 2 1 156 1 117 3.40e-49 154
MsG0180002491.01.T01 MTR_4g032420 61.417 127 34 3 31 156 38 150 7.98e-47 149
MsG0180002491.01.T01 MTR_7g006370 53.901 141 56 2 2 142 4 135 3.31e-43 140
MsG0180002491.01.T01 MTR_4g032470 50.685 146 28 2 12 156 32 134 5.07e-43 139
MsG0180002491.01.T01 MTR_7g094410 53.205 156 31 4 1 114 1 156 4.54e-41 135
MsG0180002491.01.T01 MTR_4g131980 63.866 119 37 3 3 119 2 116 3.65e-40 132
MsG0180002491.01.T01 MTR_4g127240 66.019 103 29 4 40 140 26 124 9.57e-40 130
MsG0180002491.01.T01 MTR_7g094360 47.093 172 38 4 1 119 1 172 1.22e-39 133
MsG0180002491.01.T01 MTR_8g056090 48.718 156 47 6 1 154 1 125 1.39e-36 123
MsG0180002491.01.T01 MTR_4g119422 48.299 147 69 2 2 146 227 368 1.04e-34 124
MsG0180002491.01.T01 MTR_1g112590 39.355 155 78 2 8 146 1 155 1.00e-32 114
MsG0180002491.01.T01 MTR_7g071200 69.565 69 20 1 89 156 4 72 5.53e-28 99.4
MsG0180002491.01.T01 MTR_2g066010 41.722 151 76 5 8 155 20 161 3.30e-27 100
MsG0180002491.01.T01 MTR_4g032520 43.750 144 39 4 29 154 1 120 2.56e-26 97.1
MsG0180002491.01.T01 MTR_2g065720 39.873 158 83 5 1 155 30 178 3.38e-26 98.6
MsG0180002491.01.T01 MTR_7g094350 56.522 92 27 1 1 92 1 79 7.69e-25 95.1
MsG0180002491.01.T01 MTR_7g094350 51.685 89 39 3 48 135 102 187 8.79e-20 82.0
MsG0180002491.01.T01 MTR_5g096950 37.107 159 79 4 1 155 1 142 6.85e-23 88.6
MsG0180002491.01.T01 MTR_4g032540 65.079 63 21 1 90 151 70 132 8.64e-23 87.8
MsG0180002491.01.T01 MTR_1g042510 34.615 156 64 4 8 146 1 135 2.36e-22 90.5
MsG0180002491.01.T01 MTR_2g018980 34.000 150 86 3 8 156 3 140 1.20e-21 85.5
MsG0180002491.01.T01 MTR_1g112570 36.691 139 63 4 8 128 1 132 6.71e-21 86.7
MsG0180002491.01.T01 MTR_5g078680 32.051 156 68 3 8 146 1 135 1.22e-19 82.8
MsG0180002491.01.T01 MTR_6g053620 36.806 144 81 5 8 146 17 155 4.93e-19 82.4
MsG0180002491.01.T01 MTR_6g053620 36.806 144 81 5 8 146 17 155 5.41e-19 82.4
MsG0180002491.01.T01 MTR_8g007195 34.286 140 80 4 10 143 13 146 3.00e-18 79.7
MsG0180002491.01.T01 MTR_7g077810 34.722 144 84 4 8 146 18 156 1.08e-17 78.6
MsG0180002491.01.T01 MTR_2g100825 32.667 150 92 4 1 146 4 148 6.42e-17 76.3
MsG0180002491.01.T01 MTR_8g007185 32.877 146 87 4 8 147 11 151 1.07e-16 75.5
MsG0180002491.01.T01 MTR_2g100830 33.793 145 80 5 10 146 13 149 1.13e-16 75.5
MsG0180002491.01.T01 MTR_8g007205 32.877 146 87 4 8 147 11 151 1.89e-16 74.7
MsG0180002491.01.T01 MTR_7g036780 33.333 141 83 6 1 135 1 136 5.37e-15 70.1
MsG0180002491.01.T01 MTR_4g131910 39.286 112 58 2 5 112 133 238 1.06e-14 69.3
MsG0180002491.01.T01 MTR_8g030670 30.345 145 91 3 10 149 20 159 2.87e-14 69.3
MsG0180002491.01.T01 MTR_3g061700 33.684 95 56 2 53 146 1 89 3.07e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002491.01.T01 AT5G42190 77.059 170 23 1 3 156 2 171 3.05e-85 247
MsG0180002491.01.T01 AT1G75950 78.616 159 28 1 4 156 2 160 5.18e-84 244
MsG0180002491.01.T01 AT1G20140 72.393 163 38 2 1 156 1 163 6.11e-83 241
MsG0180002491.01.T01 AT2G25700 68.712 163 44 2 1 156 1 163 2.47e-78 229
MsG0180002491.01.T01 AT4G34210 69.481 154 43 2 4 156 2 152 8.67e-76 223
MsG0180002491.01.T01 AT4G34470 68.831 154 44 2 4 156 2 152 4.59e-75 221
MsG0180002491.01.T01 AT3G21860 66.452 155 46 3 4 156 2 152 2.58e-67 201
MsG0180002491.01.T01 AT3G60010 64.331 157 47 3 5 156 2 154 1.14e-66 200
MsG0180002491.01.T01 AT3G21850 63.871 155 51 3 4 156 2 153 3.34e-66 199
MsG0180002491.01.T01 AT2G03170 62.338 154 51 2 4 156 2 149 3.21e-63 191
MsG0180002491.01.T01 AT2G03190 55.422 166 61 3 4 156 2 167 6.23e-59 181
MsG0180002491.01.T01 AT3G60020 56.329 158 57 3 5 156 2 153 2.74e-56 174
MsG0180002491.01.T01 AT2G03160 48.677 189 61 3 4 156 2 190 1.55e-55 173
MsG0180002491.01.T01 AT3G21830 55.844 154 64 2 4 156 2 152 4.98e-55 170
MsG0180002491.01.T01 AT2G20160 54.902 153 63 2 4 155 2 149 2.79e-53 166
MsG0180002491.01.T01 AT3G25650 57.229 166 58 5 4 156 2 167 6.01e-53 166
MsG0180002491.01.T01 AT1G10230 56.774 155 64 2 4 155 2 156 6.85e-52 162
MsG0180002491.01.T01 AT3G21840 57.500 120 45 3 4 121 2 117 6.81e-37 123
MsG0180002491.01.T01 AT3G53060 65.116 86 23 3 29 113 1 80 3.26e-31 107
MsG0180002491.01.T01 AT3G61415 33.333 144 86 4 8 146 18 156 3.19e-16 74.7
MsG0180002491.01.T01 AT3G61415 33.333 144 86 4 8 146 18 156 3.49e-16 74.3
MsG0180002491.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 5.04e-16 73.9
MsG0180002491.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 5.04e-16 73.9
MsG0180002491.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 5.04e-16 73.9
MsG0180002491.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 5.17e-16 73.9
MsG0180002491.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 5.17e-16 73.9

Find 54 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGGGTTTCGTTGAAAAT+TGG 0.177998 1:-39047448 None:intergenic
GAACTCCAATGTTTATCTTT+TGG 0.249043 1:+39048902 MsG0180002491.01.T01:three_prime_UTR
AATCGTGATGTGATTGATTA+GGG 0.299199 1:-39047464 None:intergenic
AAGGTCTTGCGAATCTCTTC+AGG 0.314015 1:-39048727 None:intergenic
TAATCGTGATGTGATTGATT+AGG 0.314442 1:-39047465 None:intergenic
AAACTGAACGTGTAAAACTA+TGG 0.354977 1:-39047358 None:intergenic
GGTCGATGAAGCGGTTGCTT+TGG 0.364221 1:+39047546 MsG0180002491.01.T01:CDS
ATTGGCTGATGCGTTTAATA+TGG 0.369509 1:+39048969 MsG0180002491.01.T01:three_prime_UTR
CAACGTTACCAGCAAGATCT+TGG 0.386921 1:+39047630 MsG0180002491.01.T01:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.409245 1:+39047714 MsG0180002491.01.T01:CDS
TGATCATGTCTGCCACAGTC+TGG 0.431834 1:-39048693 None:intergenic
CGAGTTCGTCAAGGTTGATC+AGG 0.435035 1:+39047741 MsG0180002491.01.T01:CDS
CACCTTCGCCAAGATCTTGC+TGG 0.436666 1:-39047638 None:intergenic
GACTTAAGCTCATCCTCGTT+AGG 0.455978 1:-39047709 None:intergenic
AAGATCTTGCTGGTAACGTT+GGG 0.477857 1:-39047628 None:intergenic
TTTGAATATCAAGAACCTGC+TGG 0.483519 1:+39048660 MsG0180002491.01.T01:CDS
CGAACTTCCTCCTCTTCCTC+TGG 0.494352 1:-39048772 None:intergenic
AAGTAACAGTTGATTATGAT+TGG 0.501129 1:+39048951 MsG0180002491.01.T01:three_prime_UTR
TGCTGGTAACGTTGGGAAGA+GGG 0.508109 1:-39047621 None:intergenic
AACGTGTAAAACTATGGGCG+TGG 0.511572 1:-39047352 None:intergenic
TGATTTCTCTCCAGAGGAAG+AGG 0.513536 1:+39048762 MsG0180002491.01.T01:CDS
TTGCTGGTAACGTTGGGAAG+AGG 0.523250 1:-39047622 None:intergenic
CAAGATCTTGCTGGTAACGT+TGG 0.530853 1:-39047629 None:intergenic
GGAAGAGGAGGAAGTTCGTA+GGG 0.537389 1:+39048777 MsG0180002491.01.T01:CDS
ATAATCATTCAAATGCCCAT+TGG 0.538622 1:-39048804 None:intergenic
CTGATCAACCTTGACGAACT+CGG 0.543997 1:-39047740 None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG 0.544399 1:+39047713 MsG0180002491.01.T01:CDS
ACTTGTTAGCATCTAAGTCA+AGG 0.545679 1:+39048835 MsG0180002491.01.T01:three_prime_UTR
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 1:+39048776 MsG0180002491.01.T01:CDS
GACTGTGGCAGACATGATCA+AGG 0.557841 1:+39048696 MsG0180002491.01.T01:CDS
ATAAACCAAAAGATAAACAT+TGG 0.560309 1:-39048907 None:intergenic
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 1:+39048789 MsG0180002491.01.T01:CDS
ACGTGTAAAACTATGGGCGT+GGG 0.563407 1:-39047351 None:intergenic
AACTGAACGTGTAAAACTAT+GGG 0.563599 1:-39047357 None:intergenic
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 1:+39048788 MsG0180002491.01.T01:CDS
CGTGTAAAACTATGGGCGTG+GGG 0.580217 1:-39047350 None:intergenic
GATGCGTTTAATATGGTACA+AGG 0.588127 1:+39048976 MsG0180002491.01.T01:three_prime_UTR
TTGGGATTCCGAGTTCGTCA+AGG 0.598524 1:+39047732 MsG0180002491.01.T01:CDS
GAAGATGATTGCGCTGACAG+TGG 0.607194 1:+39047595 MsG0180002491.01.T01:CDS
GACCTTCGAGGTCGATGAAG+CGG 0.610768 1:+39047537 MsG0180002491.01.T01:CDS
TTCCGACGGTGAGACCTTCG+AGG 0.613590 1:+39047525 MsG0180002491.01.T01:CDS
TTTCTCTCCAGAGGAAGAGG+AGG 0.615178 1:+39048765 MsG0180002491.01.T01:CDS
TCTGGCATGTAAGATCCAGC+AGG 0.615709 1:-39048675 None:intergenic
ATCACTCTGAAGAGTTCCGA+CGG 0.622850 1:+39047511 MsG0180002491.01.T01:CDS
AACCGCTTCATCGACCTCGA+AGG 0.623664 1:-39047539 None:intergenic
ACTGTGGCAGACATGATCAA+GGG 0.624146 1:+39048697 MsG0180002491.01.T01:CDS
TACCAGCAAGATCTTGGCGA+AGG 0.627734 1:+39047636 MsG0180002491.01.T01:CDS
CTGTGGCAGACATGATCAAG+GGG 0.638852 1:+39048698 MsG0180002491.01.T01:CDS
GACCTCGAAGGTCTCACCGT+CGG 0.662584 1:-39047527 None:intergenic
GTGTAAAACTATGGGCGTGG+GGG 0.666986 1:-39047349 None:intergenic
GGATCTTACATGCCAGACTG+TGG 0.675179 1:+39048681 MsG0180002491.01.T01:CDS
TGCTGAAGACAAACCTAACG+AGG 0.677963 1:+39047696 MsG0180002491.01.T01:CDS
AGGCATAACATAAAACCACA+TGG 0.707831 1:-39048863 None:intergenic
TAAGTCAAGGATCTACCATG+TGG 0.725317 1:+39048848 MsG0180002491.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTAATAAAAAAT+AGG - Chr1:39047925-39047944 None:intergenic 0.0%
!!! TTTTTTATTAATAATAATAA+AGG + Chr1:39047926-39047945 MsG0180002491.01.T01:intron 0.0%
!! ATTAATAATAATAAAGGATT+AGG + Chr1:39047932-39047951 MsG0180002491.01.T01:intron 10.0%
!! TTAATAATAATAAAGGATTA+GGG + Chr1:39047933-39047952 MsG0180002491.01.T01:intron 10.0%
!!! ATTTTATTTATGTTTTCATT+TGG + Chr1:39048260-39048279 MsG0180002491.01.T01:intron 10.0%
!!! TTTTATCGTTTATTTGATTT+GGG + Chr1:39047816-39047835 MsG0180002491.01.T01:intron 15.0%
!! AAAGGAAAAAATATGATATC+AGG - Chr1:39048625-39048644 None:intergenic 20.0%
!! ATAAACCAAAAGATAAACAT+TGG - Chr1:39048910-39048929 None:intergenic 20.0%
!! GAAAAATCTGAATAGTTTAT+TGG + Chr1:39047895-39047914 MsG0180002491.01.T01:intron 20.0%
!!! AGCAAATTTGCATTTTTTAA+TGG - Chr1:39048596-39048615 None:intergenic 20.0%
!!! AGTTAAATATTTTTCAACTC+TGG + Chr1:39049006-39049025 MsG0180002491.01.T01:three_prime_UTR 20.0%
!!! ATGTTTATGTTATGTTTTGT+TGG + Chr1:39048346-39048365 MsG0180002491.01.T01:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + Chr1:39048017-39048036 MsG0180002491.01.T01:intron 20.0%
!!! GAAATCATTTTTAATGTTGA+AGG - Chr1:39048749-39048768 None:intergenic 20.0%
!!! GTTCTTTGATGATTAAAAAA+AGG - Chr1:39048886-39048905 None:intergenic 20.0%
!!! GTTTTATCGTTTATTTGATT+TGG + Chr1:39047815-39047834 MsG0180002491.01.T01:intron 20.0%
!!! TATCATATTTTTTCCTTTGT+AGG + Chr1:39048627-39048646 MsG0180002491.01.T01:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + Chr1:39048018-39048037 MsG0180002491.01.T01:intron 20.0%
! AAGTAACAGTTGATTATGAT+TGG + Chr1:39048951-39048970 MsG0180002491.01.T01:three_prime_UTR 25.0%
! TTCCGATTCAGAAAAAATTA+GGG + Chr1:39047393-39047412 MsG0180002491.01.T01:five_prime_UTR 25.0%
! TTTCCGATTCAGAAAAAATT+AGG + Chr1:39047392-39047411 MsG0180002491.01.T01:five_prime_UTR 25.0%
!! TAATAAAGGATTAGGGTTTT+TGG + Chr1:39047940-39047959 MsG0180002491.01.T01:intron 25.0%
!! TAATAATCCTATGTTTCTGA+TGG + Chr1:39048550-39048569 MsG0180002491.01.T01:intron 25.0%
!!! AACCCTAATTTTTTCTGAAT+CGG - Chr1:39047398-39047417 None:intergenic 25.0%
!!! ATCTTGGTAAGTTTGTTTTA+GGG + Chr1:39047781-39047800 MsG0180002491.01.T01:intron 25.0%
!!! ATTTGATTTGGGTTTTGTTT+TGG + Chr1:39047827-39047846 MsG0180002491.01.T01:intron 25.0%
!!! TATCTTTTGGTTTATTTCTG+TGG + Chr1:39048915-39048934 MsG0180002491.01.T01:three_prime_UTR 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + Chr1:39048032-39048051 MsG0180002491.01.T01:intron 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + Chr1:39048031-39048050 MsG0180002491.01.T01:intron 25.0%
AAACTGAACGTGTAAAACTA+TGG - Chr1:39047361-39047380 None:intergenic 30.0%
AAATAATTAGCAGCCTACAA+AGG - Chr1:39048643-39048662 None:intergenic 30.0%
AACTGAACGTGTAAAACTAT+GGG - Chr1:39047360-39047379 None:intergenic 30.0%
AATCGTGATGTGATTGATTA+GGG - Chr1:39047467-39047486 None:intergenic 30.0%
ATAATCATTCAAATGCCCAT+TGG - Chr1:39048807-39048826 None:intergenic 30.0%
ATTAGGGTTTCGTTGAAAAT+TGG - Chr1:39047451-39047470 None:intergenic 30.0%
CAACAAGAAAACCCTAATTT+AGG - Chr1:39047870-39047889 None:intergenic 30.0%
TAAAAATGATTTCTCTCCAG+AGG + Chr1:39048756-39048775 MsG0180002491.01.T01:CDS 30.0%
TAATCGTGATGTGATTGATT+AGG - Chr1:39047468-39047487 None:intergenic 30.0%
TGATAACCAAATGATGAACA+TGG + Chr1:39048481-39048500 MsG0180002491.01.T01:intron 30.0%
! CTAAATTAGGGTTTTCTTGT+TGG + Chr1:39047868-39047887 MsG0180002491.01.T01:intron 30.0%
! GAACTCCAATGTTTATCTTT+TGG + Chr1:39048902-39048921 MsG0180002491.01.T01:three_prime_UTR 30.0%
! TTTAATGGCAATGAGTTGAA+GGG - Chr1:39048581-39048600 None:intergenic 30.0%
!! CATCTTGGTAAGTTTGTTTT+AGG + Chr1:39047780-39047799 MsG0180002491.01.T01:intron 30.0%
!! TCTTTTTGTTCTTGAGTTGT+AGG + Chr1:39048174-39048193 MsG0180002491.01.T01:intron 30.0%
!! TTTTAATGGCAATGAGTTGA+AGG - Chr1:39048582-39048601 None:intergenic 30.0%
!!! TTGTTTTGGAATGTTTGGTT+GGG + Chr1:39047841-39047860 MsG0180002491.01.T01:intron 30.0%
!!! TTTGTTTTGGAATGTTTGGT+TGG + Chr1:39047840-39047859 MsG0180002491.01.T01:intron 30.0%
AATAGCATATAGCCCAATAG+AGG - Chr1:39048116-39048135 None:intergenic 35.0%
AGAGAATTTGACATAGTGAG+TGG - Chr1:39048319-39048338 None:intergenic 35.0%
AGGCATAACATAAAACCACA+TGG - Chr1:39048866-39048885 None:intergenic 35.0%
ATGCTATTGTGAAATCCGAA+AGG + Chr1:39048224-39048243 MsG0180002491.01.T01:intron 35.0%
ATTCGTCGTGTTTGTTTGTT+TGG + Chr1:39048393-39048412 MsG0180002491.01.T01:intron 35.0%
ATTGGCTGATGCGTTTAATA+TGG + Chr1:39048969-39048988 MsG0180002491.01.T01:three_prime_UTR 35.0%
GACAATCCATGTTCATCATT+TGG - Chr1:39048490-39048509 None:intergenic 35.0%
GATGCGTTTAATATGGTACA+AGG + Chr1:39048976-39048995 MsG0180002491.01.T01:three_prime_UTR 35.0%
TGCTATTGTGAAATCCGAAA+GGG + Chr1:39048225-39048244 MsG0180002491.01.T01:intron 35.0%
TTTGAATATCAAGAACCTGC+TGG + Chr1:39048660-39048679 MsG0180002491.01.T01:CDS 35.0%
! ACTTGTTAGCATCTAAGTCA+AGG + Chr1:39048835-39048854 MsG0180002491.01.T01:three_prime_UTR 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + Chr1:39047765-39047784 MsG0180002491.01.T01:CDS 35.0%
!!! AGGATTAGGGTTTTTGGTTT+TGG + Chr1:39047946-39047965 MsG0180002491.01.T01:intron 35.0%
!!! GGATTAGGGTTTTTGGTTTT+GGG + Chr1:39047947-39047966 MsG0180002491.01.T01:intron 35.0%
!!! GGGTTTTGTTTTGGAATGTT+TGG + Chr1:39047836-39047855 MsG0180002491.01.T01:intron 35.0%
!!! TGTTTTGGAATGTTTGGTTG+GGG + Chr1:39047842-39047861 MsG0180002491.01.T01:intron 35.0%
AAAAAGATAGCCACAAGAGC+AGG - Chr1:39048161-39048180 None:intergenic 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + Chr1:39048788-39048807 MsG0180002491.01.T01:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + Chr1:39048789-39048808 MsG0180002491.01.T01:CDS 40.0%
ATCGCTGAATATTCCCCTTT+CGG - Chr1:39048242-39048261 None:intergenic 40.0%
GCTATTGTGAAATCCGAAAG+GGG + Chr1:39048226-39048245 MsG0180002491.01.T01:intron 40.0%
GGTGTAACCATCAGAAACAT+AGG - Chr1:39048560-39048579 None:intergenic 40.0%
TAAGTCAAGGATCTACCATG+TGG + Chr1:39048848-39048867 MsG0180002491.01.T01:three_prime_UTR 40.0%
! AAGATCTTGCTGGTAACGTT+GGG - Chr1:39047631-39047650 None:intergenic 40.0%
!!! AGGGTTTTGATTTGTCGCAA+AGG + Chr1:39047412-39047431 MsG0180002491.01.T01:five_prime_UTR 40.0%
!!! GGATTGTCATTTTCTCACGA+CGG + Chr1:39048502-39048521 MsG0180002491.01.T01:intron 40.0%
!!! GGGTTTTGATTTGTCGCAAA+GGG + Chr1:39047413-39047432 MsG0180002491.01.T01:five_prime_UTR 40.0%
!!! GGTTTTGATTTGTCGCAAAG+GGG + Chr1:39047414-39047433 MsG0180002491.01.T01:five_prime_UTR 40.0%
!!! GTTTTGGAATGTTTGGTTGG+GGG + Chr1:39047843-39047862 MsG0180002491.01.T01:intron 40.0%
AACGTGTAAAACTATGGGCG+TGG - Chr1:39047355-39047374 None:intergenic 45.0%
AAGGTCTTGCGAATCTCTTC+AGG - Chr1:39048730-39048749 None:intergenic 45.0%
ACAATTGTGCCTGCCTCTAT+TGG + Chr1:39048100-39048119 MsG0180002491.01.T01:intron 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + Chr1:39047713-39047732 MsG0180002491.01.T01:CDS 45.0%
ACGTGTAAAACTATGGGCGT+GGG - Chr1:39047354-39047373 None:intergenic 45.0%
ACTGTGGCAGACATGATCAA+GGG + Chr1:39048697-39048716 MsG0180002491.01.T01:CDS 45.0%
CAACGTTACCAGCAAGATCT+TGG + Chr1:39047630-39047649 MsG0180002491.01.T01:CDS 45.0%
CAATTGTGCCTGCCTCTATT+GGG + Chr1:39048101-39048120 MsG0180002491.01.T01:intron 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + Chr1:39047714-39047733 MsG0180002491.01.T01:CDS 45.0%
CTGATCAACCTTGACGAACT+CGG - Chr1:39047743-39047762 None:intergenic 45.0%
GACTTAAGCTCATCCTCGTT+AGG - Chr1:39047712-39047731 None:intergenic 45.0%
TGATTTCTCTCCAGAGGAAG+AGG + Chr1:39048762-39048781 MsG0180002491.01.T01:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + Chr1:39047696-39047715 MsG0180002491.01.T01:CDS 45.0%
TGGTTGGGGGTCCTAAATTA+GGG + Chr1:39047856-39047875 MsG0180002491.01.T01:intron 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + Chr1:39048148-39048167 MsG0180002491.01.T01:intron 45.0%
TTGGTTGGGGGTCCTAAATT+AGG + Chr1:39047855-39047874 MsG0180002491.01.T01:intron 45.0%
! ATCACTCTGAAGAGTTCCGA+CGG + Chr1:39047511-39047530 MsG0180002491.01.T01:CDS 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - Chr1:39047632-39047651 None:intergenic 45.0%
AGGAAGAGGAGGAAGTTCGT+AGG + Chr1:39048776-39048795 MsG0180002491.01.T01:CDS 50.0%
CGTGTAAAACTATGGGCGTG+GGG - Chr1:39047353-39047372 None:intergenic 50.0%
CTGTGGCAGACATGATCAAG+GGG + Chr1:39048698-39048717 MsG0180002491.01.T01:CDS 50.0%
GACTGTGGCAGACATGATCA+AGG + Chr1:39048696-39048715 MsG0180002491.01.T01:CDS 50.0%
GCATATAGCCCAATAGAGGC+AGG - Chr1:39048112-39048131 None:intergenic 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + Chr1:39048777-39048796 MsG0180002491.01.T01:CDS 50.0%
GGATCTTACATGCCAGACTG+TGG + Chr1:39048681-39048700 MsG0180002491.01.T01:CDS 50.0%
GTGTAAAACTATGGGCGTGG+GGG - Chr1:39047352-39047371 None:intergenic 50.0%
TACCAGCAAGATCTTGGCGA+AGG + Chr1:39047636-39047655 MsG0180002491.01.T01:CDS 50.0%
TCTGGCATGTAAGATCCAGC+AGG - Chr1:39048678-39048697 None:intergenic 50.0%
TGATCATGTCTGCCACAGTC+TGG - Chr1:39048696-39048715 None:intergenic 50.0%
TTGGGATTCCGAGTTCGTCA+AGG + Chr1:39047732-39047751 MsG0180002491.01.T01:CDS 50.0%
TTTCTCTCCAGAGGAAGAGG+AGG + Chr1:39048765-39048784 MsG0180002491.01.T01:CDS 50.0%
! CGAGTTCGTCAAGGTTGATC+AGG + Chr1:39047741-39047760 MsG0180002491.01.T01:CDS 50.0%
! GAAGATGATTGCGCTGACAG+TGG + Chr1:39047595-39047614 MsG0180002491.01.T01:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - Chr1:39047624-39047643 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - Chr1:39047625-39047644 None:intergenic 50.0%
AACCGCTTCATCGACCTCGA+AGG - Chr1:39047542-39047561 None:intergenic 55.0%
CACCTTCGCCAAGATCTTGC+TGG - Chr1:39047641-39047660 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+TGG - Chr1:39048775-39048794 None:intergenic 55.0%
GACCTTCGAGGTCGATGAAG+CGG + Chr1:39047537-39047556 MsG0180002491.01.T01:CDS 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + Chr1:39047546-39047565 MsG0180002491.01.T01:CDS 55.0%
GACCTCGAAGGTCTCACCGT+CGG - Chr1:39047530-39047549 None:intergenic 60.0%
TTCCGACGGTGAGACCTTCG+AGG + Chr1:39047525-39047544 MsG0180002491.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 39047344 39049043 39047344 ID=MsG0180002491.01;Name=MsG0180002491.01
Chr1 mRNA 39047344 39049043 39047344 ID=MsG0180002491.01.T01;Parent=MsG0180002491.01;Name=MsG0180002491.01.T01;_AED=0.49;_eAED=0.49;_QI=146|1|1|1|1|1|2|221|156
Chr1 exon 39048649 39049043 39048649 ID=MsG0180002491.01.T01:exon:12410;Parent=MsG0180002491.01.T01
Chr1 exon 39047344 39047786 39047344 ID=MsG0180002491.01.T01:exon:12409;Parent=MsG0180002491.01.T01
Chr1 five_prime_UTR 39047344 39047489 39047344 ID=MsG0180002491.01.T01:five_prime_utr;Parent=MsG0180002491.01.T01
Chr1 CDS 39047490 39047786 39047490 ID=MsG0180002491.01.T01:cds;Parent=MsG0180002491.01.T01
Chr1 CDS 39048649 39048822 39048649 ID=MsG0180002491.01.T01:cds;Parent=MsG0180002491.01.T01
Chr1 three_prime_UTR 39048823 39049043 39048823 ID=MsG0180002491.01.T01:three_prime_utr;Parent=MsG0180002491.01.T01
Gene Sequence

>MsG0180002491.01.T01

ATGTCTTCAACAACAAGAAAGATCACTCTGAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCTCAGACGATCAAGCATATGATCGAAGATGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTCAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGCTGCTAATTATTTGAATATCAAGAACCTGCTGGATCTTACATGCCAGACTGTGGCAGACATGATCAAGGGGAAGACACCTGAAGAGATTCGCAAGACCTTCAACATTAAAAATGATTTCTCTCCAGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA

Protein sequence

>MsG0180002491.01.T01

MSSTTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE*