AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012563.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012563.01.T01 MTR_3g025900 61.749 183 65 3 42 220 125 306 3.60e-64 211
MsG0380012563.01.T01 MTR_3g025900 51.913 183 63 5 71 250 276 436 2.52e-40 147
MsG0380012563.01.T01 MTR_7g013770 46.087 115 62 0 66 180 193 307 1.68e-22 96.7
MsG0380012563.01.T01 MTR_5g074170 68.966 58 18 0 1 58 91 148 1.85e-19 85.1
MsG0380012563.01.T01 MTR_5g056410 61.905 63 18 1 6 68 18 74 8.29e-19 79.0
MsG0380012563.01.T01 MTR_4g103540 39.091 110 65 1 71 180 222 329 3.14e-16 78.2
MsG0380012563.01.T01 MTR_6g057790 69.767 43 13 0 4 46 62 104 1.19e-12 63.5
MsG0380012563.01.T01 MTR_4g013060 50.000 64 32 0 1 64 25 88 5.13e-12 60.8
MsG0380012563.01.T01 MTR_8g021330 41.463 82 48 0 99 180 161 242 9.99e-12 64.7
MsG0380012563.01.T01 MTR_5g055520 67.500 40 13 0 6 45 54 93 1.88e-11 61.6
MsG0380012563.01.T01 MTR_3g031130 39.024 82 50 0 98 179 190 271 2.60e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012563.01.T01 AT5G61010 45.690 116 63 0 64 179 169 284 1.08e-24 102
MsG0380012563.01.T01 AT5G61010 64.286 42 15 0 181 222 390 431 3.00e-11 63.5
MsG0380012563.01.T01 AT5G61010 45.690 116 63 0 64 179 169 284 1.08e-24 102
MsG0380012563.01.T01 AT5G61010 64.286 42 15 0 181 222 390 431 3.00e-11 63.5
MsG0380012563.01.T01 AT3G29400 36.129 155 92 4 71 220 170 322 7.78e-18 82.8
MsG0380012563.01.T01 AT5G50380 44.444 81 45 0 99 179 235 315 8.75e-18 82.8
MsG0380012563.01.T01 AT3G14090 39.506 81 49 0 99 179 173 253 1.00e-12 67.8
MsG0380012563.01.T01 AT1G54090 40.741 81 48 0 99 179 170 250 2.32e-12 66.6

Find 40 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCAATTGCTTGCAATTA+AGG 0.162770 3:+19847566 MsG0380012563.01.T01:CDS
CATCGAAAATGTGCTTAAAT+TGG 0.243970 3:+19846978 MsG0380012563.01.T01:CDS
ATCAAGGCACTTGTTGAATA+TGG 0.262018 3:+19847455 MsG0380012563.01.T01:CDS
CATCGACAATAAGAAGATTA+AGG 0.292606 3:-19847484 None:intergenic
CCAGGAAAACATTTATTTGA+TGG 0.305526 3:-19847392 None:intergenic
CTCGAATCCATTTCTTTATC+CGG 0.355857 3:-19847020 None:intergenic
GGCGAGCAGTACTATAGATT+TGG 0.401193 3:+19846807 MsG0380012563.01.T01:CDS
ATTGTGTATGATGGATCATT+TGG 0.401464 3:+19846724 MsG0380012563.01.T01:CDS
GTCAATTGAAACTTGTTAGT+TGG 0.413917 3:-19844110 None:intergenic
TGAATCACCGGATAAAGAAA+TGG 0.440018 3:+19847013 MsG0380012563.01.T01:CDS
TATAAGATGAGTGGGACATA+AGG 0.451261 3:-19844178 None:intergenic
ATTGAAACTTGTTAGTTGGT+AGG 0.461078 3:-19844106 None:intergenic
AGTACAAAACACCATCTTAG+AGG 0.461901 3:+19844148 MsG0380012563.01.T01:CDS
TTGAAACTTGTTAGTTGGTA+GGG 0.464238 3:-19844105 None:intergenic
TAGTACTGCTCGCCTCGAAT+TGG 0.469538 3:-19846798 None:intergenic
AGTGGCGTTGTTTGAATCAC+CGG 0.482832 3:+19847001 MsG0380012563.01.T01:CDS
GTTTGCTTCAAATTACCATC+AGG 0.485110 3:+19846876 MsG0380012563.01.T01:CDS
ATAAGATGAGTGGGACATAA+GGG 0.508764 3:-19844177 None:intergenic
AATGAGAAGTATACTCATCA+AGG 0.520347 3:-19846935 None:intergenic
AGAGTTGATATTGTGTATGA+TGG 0.520793 3:+19846715 MsG0380012563.01.T01:intron
TTGAGATCTTCAAGTACAGA+AGG 0.527067 3:-19846835 None:intergenic
TCATGACATATCTTGTAAGA+TGG 0.530309 3:-19847427 None:intergenic
GTCCCACTCATCTTATAAGA+AGG 0.535965 3:+19844184 MsG0380012563.01.T01:CDS
TTCCTTCTTATAAGATGAGT+GGG 0.542748 3:-19844186 None:intergenic
AAGGGAATGCACCTCTAAGA+TGG 0.550245 3:-19844159 None:intergenic
ATTCCTTCTTATAAGATGAG+TGG 0.563455 3:-19844187 None:intergenic
AAACATGACAAAACTCCTGA+TGG 0.576793 3:-19846891 None:intergenic
TAGTGACGGTAGCCAATTCG+AGG 0.576966 3:+19846786 MsG0380012563.01.T01:CDS
TTAAGTTCAAAGAAACCACT+TGG 0.584899 3:-19844074 None:intergenic
TGAGATCTTCAAGTACAGAA+GGG 0.597100 3:-19846834 None:intergenic
AGAAAATCAACGAGGTGTCG+AGG 0.606797 3:+19846761 MsG0380012563.01.T01:CDS
AGATGGTGAACACCTCCACC+AGG 0.608901 3:-19847410 None:intergenic
TGAAACTTCGACTGATCTTG+CGG 0.612837 3:+19847505 MsG0380012563.01.T01:CDS
TGGATCATTTGGTTCAGTTG+AGG 0.620620 3:+19846735 MsG0380012563.01.T01:CDS
AAAATGTGCTTAAATTGGAG+TGG 0.627109 3:+19846983 MsG0380012563.01.T01:CDS
ATATGTCATGAATTACATCA+AGG 0.636314 3:+19847439 MsG0380012563.01.T01:CDS
AAACAAGAATGCATTCCAAG+TGG 0.637083 3:+19844059 MsG0380012563.01.T01:CDS
TAACAAGTTTCAATTGACAG+AGG 0.663729 3:+19844115 MsG0380012563.01.T01:CDS
GAGGTGTCGAGGAGTAGTGA+CGG 0.714989 3:+19846772 MsG0380012563.01.T01:CDS
TGAGGATGAGAAAATCAACG+AGG 0.847265 3:+19846753 MsG0380012563.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATAATTAAGAAATAAA+TGG - Chr3:19846145-19846164 None:intergenic 10.0%
!!! AAGAATAAACAAATAAATTT+TGG + Chr3:19845793-19845812 MsG0380012563.01.T01:intron 10.0%
!!! AGTTTATTTTTAAGAAAAAA+AGG + Chr3:19845822-19845841 MsG0380012563.01.T01:intron 10.0%
!!! GTAAAATGATTTTTTTAAAT+GGG - Chr3:19844913-19844932 None:intergenic 10.0%
!! AAAAAAAAAAATAAAGCACA+AGG - Chr3:19845890-19845909 None:intergenic 15.0%
!!! ACTTTTGACAATTTAAAATT+TGG - Chr3:19846122-19846141 None:intergenic 15.0%
!!! ATAAACAAATAAATTTTGGT+AGG + Chr3:19845797-19845816 MsG0380012563.01.T01:intron 15.0%
!!! CTTTTGACAATTTAAAATTT+GGG - Chr3:19846121-19846140 None:intergenic 15.0%
!!! GGTAAAATGATTTTTTTAAA+TGG - Chr3:19844914-19844933 None:intergenic 15.0%
!!! TCAAAGACTTTTATTTAAAT+TGG - Chr3:19845625-19845644 None:intergenic 15.0%
!! TCTGAGTATTTAAAAATTGT+TGG + Chr3:19846499-19846518 MsG0380012563.01.T01:intron 20.0%
!!! AAGAAGAAAGAAAAGTATAA+AGG + Chr3:19845853-19845872 MsG0380012563.01.T01:intron 20.0%
!!! ATCGACTATTTAATTTCTTA+TGG - Chr3:19844758-19844777 None:intergenic 20.0%
!!! GAGTTTATGTGATTTTTTTT+TGG - Chr3:19846173-19846192 None:intergenic 20.0%
!!! TATTTTAATTGCTAATGAGT+TGG - Chr3:19845037-19845056 None:intergenic 20.0%
!!! TTTTTTTTTTCTTTCCTTTG+TGG + Chr3:19845900-19845919 MsG0380012563.01.T01:intron 20.0%
! AAAAAAACTGTACAACCATT+AGG + Chr3:19844216-19844235 MsG0380012563.01.T01:CDS 25.0%
! AAATCAAATTGAAGTTTCTG+TGG - Chr3:19846090-19846109 None:intergenic 25.0%
! AACCAGTATTTAACGAAATT+AGG - Chr3:19845994-19846013 None:intergenic 25.0%
! AATCAAATTGAAGTTTCTGT+GGG - Chr3:19846089-19846108 None:intergenic 25.0%
! AGAGAAACAAAACTGATAAA+CGG - Chr3:19847121-19847140 None:intergenic 25.0%
! ATATATTGTACTCTACCTAA+TGG - Chr3:19844234-19844253 None:intergenic 25.0%
! ATATGTCATGAATTACATCA+AGG + Chr3:19847439-19847458 MsG0380012563.01.T01:CDS 25.0%
! CAAATGCTCTTATTAAATGT+AGG - Chr3:19845580-19845599 None:intergenic 25.0%
! CAACTAAACAAAATCAATCA+AGG - Chr3:19844625-19844644 None:intergenic 25.0%
! GAAAAACTCATTCAAACATT+TGG + Chr3:19844778-19844797 MsG0380012563.01.T01:intron 25.0%
! GCTTATTTAGATGCTATTAT+GGG - Chr3:19844935-19844954 None:intergenic 25.0%
! GGTATACAAAATATTGTCTA+AGG - Chr3:19845148-19845167 None:intergenic 25.0%
! TAATTTCGTTAAATACTGGT+TGG + Chr3:19845993-19846012 MsG0380012563.01.T01:intron 25.0%
! TCTGCCATAAAATTATGTTT+AGG - Chr3:19844402-19844421 None:intergenic 25.0%
! TTCCTAATTTCGTTAAATAC+TGG + Chr3:19845989-19846008 MsG0380012563.01.T01:intron 25.0%
! TTTCATCAATTGAACACAAT+TGG - Chr3:19846384-19846403 None:intergenic 25.0%
!! CAAGTAAACAAAACAGTTTT+CGG - Chr3:19847213-19847232 None:intergenic 25.0%
!! GAATGTAAATTTGAAGCATA+AGG + Chr3:19846570-19846589 MsG0380012563.01.T01:intron 25.0%
!! GCTACCTAAACATAATTTTA+TGG + Chr3:19844395-19844414 MsG0380012563.01.T01:intron 25.0%
!! GTTTTGTGCCTTTTAAATTT+TGG + Chr3:19847159-19847178 MsG0380012563.01.T01:intron 25.0%
!! TTTGAGTTCTGTTATTTATG+AGG - Chr3:19845100-19845119 None:intergenic 25.0%
!!! AAATCTTTGTTCAGTTTTGT+TGG + Chr3:19846217-19846236 MsG0380012563.01.T01:intron 25.0%
!!! AAGAGTTAGTTTGTTTAAAG+TGG - Chr3:19844990-19845009 None:intergenic 25.0%
!!! AGAGTTAGTTTGTTTAAAGT+GGG - Chr3:19844989-19845008 None:intergenic 25.0%
!!! CTACATTTAATAAGAGCATT+TGG + Chr3:19845578-19845597 MsG0380012563.01.T01:intron 25.0%
!!! GTATAGTTATGAGTTTTGTA+GGG - Chr3:19844821-19844840 None:intergenic 25.0%
!!! TATTGTTGCATTTTAATGAC+TGG - Chr3:19845654-19845673 None:intergenic 25.0%
!!! TGTATAGTTATGAGTTTTGT+AGG - Chr3:19844822-19844841 None:intergenic 25.0%
!!! TTGTACTGTCTTTATTTTGT+TGG - Chr3:19844366-19844385 None:intergenic 25.0%
AAAATGTGCTTAAATTGGAG+TGG + Chr3:19846983-19847002 MsG0380012563.01.T01:CDS 30.0%
AAATACCATCAAGAAACTGA+CGG + Chr3:19845052-19845071 MsG0380012563.01.T01:intron 30.0%
AAATAGAAAATGTGTGGAGT+GGG - Chr3:19846061-19846080 None:intergenic 30.0%
AAATGTAGGTCTCTTTCATA+TGG - Chr3:19845566-19845585 None:intergenic 30.0%
AAATTGTGTAAGCACATTCT+CGG + Chr3:19847084-19847103 MsG0380012563.01.T01:intron 30.0%
AACGACAGATATTAATCTTG+AGG - Chr3:19845722-19845741 None:intergenic 30.0%
ACATGCGTTATGATAATATC+TGG + Chr3:19844486-19844505 MsG0380012563.01.T01:intron 30.0%
ATGAGTTTGGAGACAAATAT+TGG + Chr3:19846463-19846482 MsG0380012563.01.T01:intron 30.0%
ATTCCTTCTTATAAGATGAG+TGG - Chr3:19844190-19844209 None:intergenic 30.0%
CAATGAAGACTATCAACTTT+AGG + Chr3:19845204-19845223 MsG0380012563.01.T01:intron 30.0%
CATCGAAAATGTGCTTAAAT+TGG + Chr3:19846978-19846997 MsG0380012563.01.T01:CDS 30.0%
CATCGACAATAAGAAGATTA+AGG - Chr3:19847487-19847506 None:intergenic 30.0%
CCAGGAAAACATTTATTTGA+TGG - Chr3:19847395-19847414 None:intergenic 30.0%
GCTTAAATGTGTTGAAGATA+AGG + Chr3:19846438-19846457 MsG0380012563.01.T01:intron 30.0%
GGCTTATTTAGATGCTATTA+TGG - Chr3:19844936-19844955 None:intergenic 30.0%
GTGTTCAATTGATGAAAGAA+AGG + Chr3:19846387-19846406 MsG0380012563.01.T01:intron 30.0%
TAACAAGTTTCAATTGACAG+AGG + Chr3:19844115-19844134 MsG0380012563.01.T01:CDS 30.0%
TCATGACATATCTTGTAAGA+TGG - Chr3:19847430-19847449 None:intergenic 30.0%
TGAAGATAAGGTAATGAGTT+TGG + Chr3:19846450-19846469 MsG0380012563.01.T01:intron 30.0%
TGAATTGAAAGACATGTATC+AGG - Chr3:19846693-19846712 None:intergenic 30.0%
TGTTTCTTTCATGAATTCTG+TGG - Chr3:19845266-19845285 None:intergenic 30.0%
TTAAGTTCAAAGAAACCACT+TGG - Chr3:19844077-19844096 None:intergenic 30.0%
TTCCTTCTTATAAGATGAGT+GGG - Chr3:19844189-19844208 None:intergenic 30.0%
TTGGATCCTTAAGGATTTAT+GGG - Chr3:19845310-19845329 None:intergenic 30.0%
TTGTTTACTTGACATGTATG+AGG + Chr3:19847222-19847241 MsG0380012563.01.T01:intron 30.0%
! AATGAGAAGTATACTCATCA+AGG - Chr3:19846938-19846957 None:intergenic 30.0%
! AGGAAGTTAAATGTGCTATT+TGG - Chr3:19845377-19845396 None:intergenic 30.0%
! CCATCAAATAAATGTTTTCC+TGG + Chr3:19847392-19847411 MsG0380012563.01.T01:CDS 30.0%
! CTCTTTGAAAGTCAAAAGAA+TGG - Chr3:19844264-19844283 None:intergenic 30.0%
! GCTCAATCAACTTTTGTTAA+GGG - Chr3:19845078-19845097 None:intergenic 30.0%
! GTATGTCAGCATTATCTTTT+CGG + Chr3:19844534-19844553 MsG0380012563.01.T01:intron 30.0%
! TCAAATAAATGTTTTCCTGG+TGG + Chr3:19847395-19847414 MsG0380012563.01.T01:CDS 30.0%
! TTGTTGCAAAGTTTGAGTTA+GGG - Chr3:19846536-19846555 None:intergenic 30.0%
! TTTAACTTCCTCTTCAGAAA+AGG + Chr3:19845386-19845405 MsG0380012563.01.T01:intron 30.0%
! TTTAATTGCTAATGAGTTGG+TGG - Chr3:19845034-19845053 None:intergenic 30.0%
! TTTGTTGCAAAGTTTGAGTT+AGG - Chr3:19846537-19846556 None:intergenic 30.0%
!! AGAGTTGATATTGTGTATGA+TGG + Chr3:19846715-19846734 MsG0380012563.01.T01:intron 30.0%
!! AGTTGATAGTCTTCATTGTT+TGG - Chr3:19845202-19845221 None:intergenic 30.0%
!! ATTGAAACTTGTTAGTTGGT+AGG - Chr3:19844109-19844128 None:intergenic 30.0%
!! ATTGTGTATGATGGATCATT+TGG + Chr3:19846724-19846743 MsG0380012563.01.T01:CDS 30.0%
!! GGAAGTTAAATGTGCTATTT+GGG - Chr3:19845376-19845395 None:intergenic 30.0%
!! GTCAATTGAAACTTGTTAGT+TGG - Chr3:19844113-19844132 None:intergenic 30.0%
!! TTGAAACTTGTTAGTTGGTA+GGG - Chr3:19844108-19844127 None:intergenic 30.0%
!!! CATTCTTTTGACTTTCAAAG+AGG + Chr3:19844262-19844281 MsG0380012563.01.T01:intron 30.0%
!!! TTTGTTCAGTTTTGTTGGTA+TGG + Chr3:19846222-19846241 MsG0380012563.01.T01:intron 30.0%
AAACAAGAATGCATTCCAAG+TGG + Chr3:19844059-19844078 MsG0380012563.01.T01:CDS 35.0%
AAACATGACAAAACTCCTGA+TGG - Chr3:19846894-19846913 None:intergenic 35.0%
AAACTCTTGAGAATATCTCC+AGG + Chr3:19844425-19844444 MsG0380012563.01.T01:intron 35.0%
AAAGCTCAAGTACGTTTCAA+CGG - Chr3:19844705-19844724 None:intergenic 35.0%
AAGTCAATCTTGGATCCTTA+AGG - Chr3:19845319-19845338 None:intergenic 35.0%
AATAGAAAATGTGTGGAGTG+GGG - Chr3:19846060-19846079 None:intergenic 35.0%
AGTACAAAACACCATCTTAG+AGG + Chr3:19844148-19844167 MsG0380012563.01.T01:CDS 35.0%
AGTTGTTATGTCAAGACTTG+AGG + Chr3:19846622-19846641 MsG0380012563.01.T01:intron 35.0%
ATAAGATGAGTGGGACATAA+GGG - Chr3:19844180-19844199 None:intergenic 35.0%
ATTGTTCAGACGTATCTTGT+TGG + Chr3:19847054-19847073 MsG0380012563.01.T01:intron 35.0%
CACAAGTCAATACTCAATAC+AGG - Chr3:19845952-19845971 None:intergenic 35.0%
CAGAAAAGGAATTGTCAAAC+TGG + Chr3:19845400-19845419 MsG0380012563.01.T01:intron 35.0%
CTCGAATCCATTTCTTTATC+CGG - Chr3:19847023-19847042 None:intergenic 35.0%
CTTGGATCCTTAAGGATTTA+TGG - Chr3:19845311-19845330 None:intergenic 35.0%
GAAATAGAAAATGTGTGGAG+TGG - Chr3:19846062-19846081 None:intergenic 35.0%
GAGAGGAAATAGAAAATGTG+TGG - Chr3:19846067-19846086 None:intergenic 35.0%
GGTAATAAGACTGCAATGAA+TGG - Chr3:19845701-19845720 None:intergenic 35.0%
GTTCTGATGAAAGTCAATCT+TGG - Chr3:19845329-19845348 None:intergenic 35.0%
GTTTGCTTCAAATTACCATC+AGG + Chr3:19846876-19846895 MsG0380012563.01.T01:CDS 35.0%
TATAAGATGAGTGGGACATA+AGG - Chr3:19844181-19844200 None:intergenic 35.0%
TCCAGTGTCTCAAATTTCTT+TGG + Chr3:19846191-19846210 MsG0380012563.01.T01:intron 35.0%
TGAATCACCGGATAAAGAAA+TGG + Chr3:19847013-19847032 MsG0380012563.01.T01:CDS 35.0%
TGAGATCTTCAAGTACAGAA+GGG - Chr3:19846837-19846856 None:intergenic 35.0%
TGATAGTCTTCATTGTTTGG+CGG - Chr3:19845199-19845218 None:intergenic 35.0%
TTCATATGGCTATGTGTCAT+TGG - Chr3:19845552-19845571 None:intergenic 35.0%
TTGAGATCTTCAAGTACAGA+AGG - Chr3:19846838-19846857 None:intergenic 35.0%
! AATAAATGTTTTCCTGGTGG+AGG + Chr3:19847398-19847417 MsG0380012563.01.T01:CDS 35.0%
! AGAATTAGTTCTCCCTGAAA+AGG - Chr3:19845494-19845513 None:intergenic 35.0%
! AGGGAGAACTAATTCTTTTC+AGG + Chr3:19845498-19845517 MsG0380012563.01.T01:intron 35.0%
! ATCAAGGCACTTGTTGAATA+TGG + Chr3:19847455-19847474 MsG0380012563.01.T01:CDS 35.0%
! ATGGTGTAGATCTGAAACAA+TGG - Chr3:19844739-19844758 None:intergenic 35.0%
! CTAAGATGGTGTTTTGTACT+TGG - Chr3:19844148-19844167 None:intergenic 35.0%
! GACTATCAACTTTAGGAATC+AGG + Chr3:19845211-19845230 MsG0380012563.01.T01:intron 35.0%
! GGCTCAATCAACTTTTGTTA+AGG - Chr3:19845079-19845098 None:intergenic 35.0%
! GGGAGAACTAATTCTTTTCA+GGG + Chr3:19845499-19845518 MsG0380012563.01.T01:intron 35.0%
! GGTTTTTGAACATTTAGCAG+TGG + Chr3:19847243-19847262 MsG0380012563.01.T01:intron 35.0%
! GTCATGTTTTCATTGCTTCT+AGG + Chr3:19846905-19846924 MsG0380012563.01.T01:CDS 35.0%
! TCCTATTTCTCTGGTGAATA+GGG - Chr3:19845169-19845188 None:intergenic 35.0%
! TGAGTTGAGAAAAACTCTCT+TGG + Chr3:19846348-19846367 MsG0380012563.01.T01:intron 35.0%
! TGGGAGTTGATTAATGATTC+AGG - Chr3:19844894-19844913 None:intergenic 35.0%
! TTTTCGGTCTGCAAATAACT+GGG + Chr3:19844550-19844569 MsG0380012563.01.T01:intron 35.0%
!! CTCTGAAATATCTCGAAGTT+CGG + Chr3:19847137-19847156 MsG0380012563.01.T01:intron 35.0%
!! GAAGTTGATTCTTTTGTCAG+AGG + Chr3:19847289-19847308 MsG0380012563.01.T01:intron 35.0%
!! GTGCCTTTTAAATTTTGGTG+AGG + Chr3:19847164-19847183 MsG0380012563.01.T01:intron 35.0%
!! TGACAATTCCTTTTCTGAAG+AGG - Chr3:19845397-19845416 None:intergenic 35.0%
!!! TTCAGTTTTGTTGGTATGGA+AGG + Chr3:19846226-19846245 MsG0380012563.01.T01:intron 35.0%
AACAAGGTAGCTGTACTAGA+AGG + Chr3:19845452-19845471 MsG0380012563.01.T01:intron 40.0%
AACTCAAAACTTGTCGCAGA+TGG + Chr3:19845112-19845131 MsG0380012563.01.T01:intron 40.0%
AATTGAAGTTTCTGTGGGAG+AGG - Chr3:19846084-19846103 None:intergenic 40.0%
ACCCAGAACTTGAACAAATG+AGG + Chr3:19844672-19844691 MsG0380012563.01.T01:intron 40.0%
ACCCTATTCACCAGAGAAAT+AGG + Chr3:19845165-19845184 MsG0380012563.01.T01:intron 40.0%
CATCCTCCCATAAATCCTTA+AGG + Chr3:19845301-19845320 MsG0380012563.01.T01:intron 40.0%
CCCAGAACTTGAACAAATGA+GGG + Chr3:19844673-19844692 MsG0380012563.01.T01:intron 40.0%
CGGCCTCACCAAAATTTAAA+AGG - Chr3:19847170-19847189 None:intergenic 40.0%
CTTAAGGATTTATGGGAGGA+TGG - Chr3:19845303-19845322 None:intergenic 40.0%
CTTTCATGAATTCTGTGGCA+TGG - Chr3:19845261-19845280 None:intergenic 40.0%
GATCCTTAAGGATTTATGGG+AGG - Chr3:19845307-19845326 None:intergenic 40.0%
GTCCCACTCATCTTATAAGA+AGG + Chr3:19844184-19844203 MsG0380012563.01.T01:CDS 40.0%
TATCATAACGCATGTTCCTG+AGG - Chr3:19844481-19844500 None:intergenic 40.0%
TCTTCACAGGTTGTGATCAT+AGG - Chr3:19846260-19846279 None:intergenic 40.0%
TGAAACTTCGACTGATCTTG+CGG + Chr3:19847505-19847524 MsG0380012563.01.T01:CDS 40.0%
TGAGGATGAGAAAATCAACG+AGG + Chr3:19846753-19846772 MsG0380012563.01.T01:CDS 40.0%
TGTGGCATGGAAATTGACTA+AGG - Chr3:19845248-19845267 None:intergenic 40.0%
TTTCGGTCTGCAAATAACTG+GGG + Chr3:19844551-19844570 MsG0380012563.01.T01:intron 40.0%
! ACCCTCATTTGTTCAAGTTC+TGG - Chr3:19844677-19844696 None:intergenic 40.0%
! ACTAGATCACCTCCTTTTCA+GGG + Chr3:19845479-19845498 MsG0380012563.01.T01:intron 40.0%
! ATTAGTTCTCCCTGAAAAGG+AGG - Chr3:19845491-19845510 None:intergenic 40.0%
! CCCTCATTTGTTCAAGTTCT+GGG - Chr3:19844676-19844695 None:intergenic 40.0%
! CTTTTCGGTCTGCAAATAAC+TGG + Chr3:19844549-19844568 MsG0380012563.01.T01:intron 40.0%
! GCCAAAGAAATTTGAGACAC+TGG - Chr3:19846195-19846214 None:intergenic 40.0%
! GTCCTATTTCTCTGGTGAAT+AGG - Chr3:19845170-19845189 None:intergenic 40.0%
! GTTTAAAGTGGGCTTCGAAA+AGG - Chr3:19844978-19844997 None:intergenic 40.0%
! TGGATCATTTGGTTCAGTTG+AGG + Chr3:19846735-19846754 MsG0380012563.01.T01:CDS 40.0%
AAGCACATTCTCGGAGACTT+TGG + Chr3:19847093-19847112 MsG0380012563.01.T01:intron 45.0%
AGGATTTATGGGAGGATGGA+AGG - Chr3:19845299-19845318 None:intergenic 45.0%
AGTGGCGTTGTTTGAATCAC+CGG + Chr3:19847001-19847020 MsG0380012563.01.T01:CDS 45.0%
ATCAATCAAGGACTCAACCC+TGG - Chr3:19844613-19844632 None:intergenic 45.0%
ATGACTTCACACCCCAATTG+AGG - Chr3:19845432-19845451 None:intergenic 45.0%
CATGTTCCTGAGGATTGAGA+TGG - Chr3:19844471-19844490 None:intergenic 45.0%
CCACATGTTGATCTCTTCAC+AGG - Chr3:19846273-19846292 None:intergenic 45.0%
CCTGTGAAGAGATCAACATG+TGG + Chr3:19846270-19846289 MsG0380012563.01.T01:intron 45.0%
GATCGAACACTTCACCACAA+AGG - Chr3:19845917-19845936 None:intergenic 45.0%
GGCGAGCAGTACTATAGATT+TGG + Chr3:19846807-19846826 MsG0380012563.01.T01:CDS 45.0%
GTCAAGACTTGAGGATGAGT+TGG + Chr3:19846631-19846650 MsG0380012563.01.T01:intron 45.0%
TAGCTTCCATCTCAATCCTC+AGG + Chr3:19844462-19844481 MsG0380012563.01.T01:intron 45.0%
TCAATACAGGTGTCAGTCCT+AGG - Chr3:19845939-19845958 None:intergenic 45.0%
TGACATACGATGAATGCGTG+AGG - Chr3:19844522-19844541 None:intergenic 45.0%
TGGGGTGTGAAGTCATAACA+AGG + Chr3:19845436-19845455 MsG0380012563.01.T01:intron 45.0%
TGTGACAGTTTCAAGAGCTC+AGG - Chr3:19845351-19845370 None:intergenic 45.0%
TTTGGTGAGGCCGTAACAAT+GGG + Chr3:19847177-19847196 MsG0380012563.01.T01:intron 45.0%
! AAGGGAATGCACCTCTAAGA+TGG - Chr3:19844162-19844181 None:intergenic 45.0%
! CGAAAAGGCCTGGTGATTTT+TGG - Chr3:19844963-19844982 None:intergenic 45.0%
! CTATGTGTCATTGGCATGTG+AGG - Chr3:19845543-19845562 None:intergenic 45.0%
! GACTAGATCACCTCCTTTTC+AGG + Chr3:19845478-19845497 MsG0380012563.01.T01:intron 45.0%
! GGACTTTCGTCCTATTTCTC+TGG - Chr3:19845178-19845197 None:intergenic 45.0%
! TTTTGGTGAGGCCGTAACAA+TGG + Chr3:19847176-19847195 MsG0380012563.01.T01:intron 45.0%
!! AGAAAATCAACGAGGTGTCG+AGG + Chr3:19846761-19846780 MsG0380012563.01.T01:CDS 45.0%
!!! CTTTTTTTTTTTTTTTTTTT+GGG - Chr3:19845763-19845782 None:intergenic 5.0%
!!! TCTTTTTTTTTTTTTTTTTT+TGG - Chr3:19845764-19845783 None:intergenic 5.0%
AAACTGGACCCCTCCTCAAT+TGG + Chr3:19845416-19845435 MsG0380012563.01.T01:intron 50.0%
AACTGGACCCCTCCTCAATT+GGG + Chr3:19845417-19845436 MsG0380012563.01.T01:intron 50.0%
AAGGGCCGTCAGTTTCTTGA+TGG - Chr3:19845060-19845079 None:intergenic 50.0%
ACTTCACACCCCAATTGAGG+AGG - Chr3:19845429-19845448 None:intergenic 50.0%
AGCCCACTCCAAAAATCACC+AGG + Chr3:19844952-19844971 MsG0380012563.01.T01:intron 50.0%
CGTGTGTGCTCCCATTGTTA+CGG - Chr3:19847190-19847209 None:intergenic 50.0%
CTTCACACCCCAATTGAGGA+GGG - Chr3:19845428-19845447 None:intergenic 50.0%
GCTACGTTACTGAGATTGCC+TGG - Chr3:19844446-19844465 None:intergenic 50.0%
GCTCAAGTACGTTTCAACGG+TGG - Chr3:19844702-19844721 None:intergenic 50.0%
TAGTACTGCTCGCCTCGAAT+TGG - Chr3:19846801-19846820 None:intergenic 50.0%
TAGTGACGGTAGCCAATTCG+AGG + Chr3:19846786-19846805 MsG0380012563.01.T01:CDS 50.0%
TCTGGGTGATGTCACGCTAA+AGG - Chr3:19844659-19844678 None:intergenic 50.0%
TTCACACCCCAATTGAGGAG+GGG - Chr3:19845427-19845446 None:intergenic 50.0%
! GTGGTGAAGTGTTCGATCCT+AGG + Chr3:19845919-19845938 MsG0380012563.01.T01:intron 50.0%
!! AGGCCTGGTGATTTTTGGAG+TGG - Chr3:19844958-19844977 None:intergenic 50.0%
!!! GGCCTGGTGATTTTTGGAGT+GGG - Chr3:19844957-19844976 None:intergenic 50.0%
AACTGGGGCGTGCATACTGA+AGG + Chr3:19844566-19844585 MsG0380012563.01.T01:intron 55.0%
ACTGGACCCCTCCTCAATTG+GGG + Chr3:19845418-19845437 MsG0380012563.01.T01:intron 55.0%
AGATGGTGAACACCTCCACC+AGG - Chr3:19847413-19847432 None:intergenic 55.0%
CAACCCTGGAGACACAAGGA+AGG - Chr3:19844599-19844618 None:intergenic 55.0%
CCACCTTCCTTGTGTCTCCA+GGG + Chr3:19844593-19844612 MsG0380012563.01.T01:intron 55.0%
GACTCAACCCTGGAGACACA+AGG - Chr3:19844603-19844622 None:intergenic 55.0%
TCCACCTTCCTTGTGTCTCC+AGG + Chr3:19844592-19844611 MsG0380012563.01.T01:intron 55.0%
TGGAGACACAAGGAAGGTGG+AGG - Chr3:19844593-19844612 None:intergenic 55.0%
! AAGTGGGCTTCGAAAAGGCC+TGG - Chr3:19844973-19844992 None:intergenic 55.0%
!! GAGGTGTCGAGGAGTAGTGA+CGG + Chr3:19846772-19846791 MsG0380012563.01.T01:CDS 55.0%
CCCTGGAGACACAAGGAAGG+TGG - Chr3:19844596-19844615 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 19844047 19847586 19844047 ID=MsG0380012563.01;Name=MsG0380012563.01
Chr3 mRNA 19844047 19847586 19844047 ID=MsG0380012563.01.T01;Parent=MsG0380012563.01;Name=MsG0380012563.01.T01;_AED=0.58;_eAED=0.58;_QI=0|0|0|0.66|1|1|3|0|250
Chr3 exon 19844047 19844237 19844047 ID=MsG0380012563.01.T01:exon:7311;Parent=MsG0380012563.01.T01
Chr3 exon 19846717 19847064 19846717 ID=MsG0380012563.01.T01:exon:7310;Parent=MsG0380012563.01.T01
Chr3 exon 19847373 19847586 19847373 ID=MsG0380012563.01.T01:exon:7309;Parent=MsG0380012563.01.T01
Chr3 CDS 19844047 19844237 19844047 ID=MsG0380012563.01.T01:cds;Parent=MsG0380012563.01.T01
Chr3 CDS 19846717 19847064 19846717 ID=MsG0380012563.01.T01:cds;Parent=MsG0380012563.01.T01
Chr3 CDS 19847373 19847586 19847373 ID=MsG0380012563.01.T01:cds;Parent=MsG0380012563.01.T01
Gene Sequence

>MsG0380012563.01.T01

ATGATTAGTGACAAACAAGAATGCATTCCAAGTGGTTTCTTTGAACTTAATATTACTTCCCTACCAACTAACAAGTTTCAATTGACAGAGGAGCACGACCAAGTACAAAACACCATCTTAGAGGTGCATTCCCTTATGTCCCACTCATCTTATAAGAAGGAATCTGATGAAAAAAACTGTACAACCATTAGAGTTGATATTGTGTATGATGGATCATTTGGTTCAGTTGAGGATGAGAAAATCAACGAGGTGTCGAGGAGTAGTGACGGTAGCCAATTCGAGGCGAGCAGTACTATAGATTTGGTGCTCCCTTCTGTACTTGAAGATCTCAAAAGCATTGCTAAAGCTATGTTTGCTTCAAATTACCATCAGGAGTTTTGTCATGTTTTCATTGCTTCTAGGAGAGAAGCCTTGATGAGTATACTTCTCATTCTAGAAATCGAAAAACTAAGCATCGAAAATGTGCTTAAATTGGAGTGGCGTTGTTTGAATCACCGGATAAAGAAATGGATTCGAGCGATGAAAGTCATTGTTCAGACAAATGCTATTGCAACAAATCCATCAAATAAATGTTTTCCTGGTGGAGGTGTTCACCATCTTACAAGATATGTCATGAATTACATCAAGGCACTTGTTGAATATGGTGATAGCCTTAATCTTCTTATTGTCGATGAAACTTCGACTGATCTTGCGGCTAGTGATGACAACGATGAAAATTCTACTCTCTCATGTTGTTCAATTGCTTGCAATTAA
Protein sequence

>MsG0380012563.01.T01

MISDKQECIPSGFFELNITSLPTNKFQLTEEHDQVQNTILEVHSLMSHSSYKKESDEKNCTTIRVDIVYDGSFGSVEDEKINEVSRSSDGSQFEASSTIDLVLPSVLEDLKSIAKAMFASNYHQEFCHVFIASRREALMSILLILEIEKLSIENVLKLEWRCLNHRIKKWIRAMKVIVQTNAIATNPSNKCFPGGGVHHLTRYVMNYIKALVEYGDSLNLLIVDETSTDLAASDDNDENSTLSCCSIACN*