AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012568.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012568.01.T01 MTR_3g025840 89.251 307 12 3 1 296 1 297 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012568.01.T01 AT1G18640 62.092 306 93 4 1 295 1 294 2.13e-126 362
MsG0380012568.01.T01 AT1G18640 61.157 242 80 3 1 231 1 239 2.29e-93 278

Find 82 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGCTCTGGACAGTTTC+TGG 0.064331 3:-19907577 MsG0380012568.01.T01:CDS
TGCCATTAGCCTTTAGTTTC+TGG 0.105326 3:+19908655 None:intergenic
TTTATTCTTCTTCCATTATT+GGG 0.202068 3:-19905537 MsG0380012568.01.T01:three_prime_UTR
AAATTCATCCGCGTGTTCTT+AGG 0.209097 3:-19905617 MsG0380012568.01.T01:three_prime_UTR
ATTTATTCTTCTTCCATTAT+TGG 0.216726 3:-19905538 MsG0380012568.01.T01:three_prime_UTR
TTGATGATGGATAGAAATTC+TGG 0.271373 3:-19910533 MsG0380012568.01.T01:intron
AGTGAGGAAGCAGATGGATT+TGG 0.277904 3:-19905654 MsG0380012568.01.T01:three_prime_UTR
ATCAGAACCAAATCTCAAAA+AGG 0.281473 3:-19911935 MsG0380012568.01.T01:CDS
GGTACGTTTGGATTTCAAAT+TGG 0.283743 3:-19911913 MsG0380012568.01.T01:CDS
GTGAGGAAGCAGATGGATTT+GGG 0.317077 3:-19905653 MsG0380012568.01.T01:three_prime_UTR
TCAAGACCTTATAAATTCAT+TGG 0.322272 3:-19905720 MsG0380012568.01.T01:CDS
GTTACCCCAATGAATTTATA+AGG 0.326728 3:+19905714 None:intergenic
GGAAGCTCTGGACAGTTTCT+GGG 0.341736 3:-19907576 MsG0380012568.01.T01:CDS
CAAGACCTTATAAATTCATT+GGG 0.350346 3:-19905719 MsG0380012568.01.T01:CDS
ATGGAAGCTTTGATCAGTTA+TGG 0.352182 3:-19912015 MsG0380012568.01.T01:CDS
GTAAAGCCATTGACACGAAC+TGG 0.374183 3:+19911985 None:intergenic
TGGAAGCTTTGATCAGTTAT+GGG 0.406259 3:-19912014 MsG0380012568.01.T01:CDS
TGTTGTTGGTTGGTTGGTTA+AGG 0.417941 3:+19912130 None:intergenic
AAGCATGTATATCTGATCTC+AGG 0.418787 3:-19908633 MsG0380012568.01.T01:CDS
AAGAAAAGAAACGTTGTTGT+TGG 0.442430 3:+19912116 None:intergenic
TGGATTAACTCTTCAATGCC+AGG 0.447873 3:+19908675 None:intergenic
GCAGCCAATGCTTCTTCAAA+AGG 0.450036 3:+19910278 None:intergenic
TTGAAGAAGCATTGGCTGCT+AGG 0.451343 3:-19910274 MsG0380012568.01.T01:CDS
TTATTCTTCTTCCATTATTG+GGG 0.452061 3:-19905536 MsG0380012568.01.T01:three_prime_UTR
TGTGGATAGCACTGTGTGCC+TGG 0.453183 3:-19910476 MsG0380012568.01.T01:CDS
ATCAACCCAGTTCGTGTCAA+TGG 0.453233 3:-19911991 MsG0380012568.01.T01:CDS
AATTCATCCGCGTGTTCTTA+GGG 0.461433 3:-19905616 MsG0380012568.01.T01:three_prime_UTR
CACATTTAGGCTCGTAGACC+AGG 0.464103 3:-19905827 MsG0380012568.01.T01:intron
ACGAAAATGAGCATACTTCA+AGG 0.468656 3:-19907548 MsG0380012568.01.T01:CDS
GACATGTTCATTTGCTATGC+TGG 0.485489 3:-19905797 MsG0380012568.01.T01:CDS
ATCCAGAAACTAAAGGCTAA+TGG 0.487422 3:-19908657 MsG0380012568.01.T01:CDS
ATTATGGCTGCTGCTACTGT+TGG 0.489665 3:-19911850 MsG0380012568.01.T01:CDS
CTTGATTTGTTCGACTGCAG+TGG 0.507337 3:+19907512 None:intergenic
CGGTCTCAATCTTACTTTGG+CGG 0.508451 3:+19910197 None:intergenic
GGATAGAAATTCTGGAGCTA+TGG 0.509058 3:-19910525 MsG0380012568.01.T01:intron
AGATTTGGTTCTGATTCAAA+CGG 0.510847 3:+19911943 None:intergenic
AAACGTTGTTGTTGGTTGGT+TGG 0.521352 3:+19912124 None:intergenic
ATTCTGGAGCTATGGAAGAA+TGG 0.524311 3:-19910517 MsG0380012568.01.T01:CDS
AAAGAAACGTTGTTGTTGGT+TGG 0.526829 3:+19912120 None:intergenic
AGAGTTAATCCAGAAACTAA+AGG 0.527183 3:-19908664 MsG0380012568.01.T01:CDS
CAGGAAAAGCTGTTGCAGAA+TGG 0.530124 3:-19910417 MsG0380012568.01.T01:CDS
CTGTTGCTGCAAAAGCTGAT+TGG 0.533885 3:-19905757 MsG0380012568.01.T01:CDS
AGCATGTATATCTGATCTCA+GGG 0.541970 3:-19908632 MsG0380012568.01.T01:CDS
GGATTAACTCTTCAATGCCA+GGG 0.542136 3:+19908676 None:intergenic
AAACATACAAACGCAGTGGA+AGG 0.552155 3:+19905489 None:intergenic
GTAGCAGCAGCCATAATCAA+AGG 0.552287 3:+19911856 None:intergenic
TACAAAGCATTAACTATGGT+CGG 0.554184 3:-19907403 MsG0380012568.01.T01:CDS
GCATTAACTATGGTCGGAGA+TGG 0.555326 3:-19907397 MsG0380012568.01.T01:CDS
ACTGTTGGAAATTCACAAGT+TGG 0.556078 3:-19911835 MsG0380012568.01.T01:CDS
GAGAACATGGTTCCTTCCAA+AGG 0.560510 3:-19911805 MsG0380012568.01.T01:intron
GCTCGTCAATTCCTTCATCC+AGG 0.561151 3:+19910458 None:intergenic
AGCACTGTGTGCCTGGATGA+AGG 0.562491 3:-19910469 MsG0380012568.01.T01:CDS
GAATTATATAAACCTTTGGA+AGG 0.565439 3:+19911793 None:intergenic
AAAATATCTCGGATATCTTG+AGG 0.567132 3:-19907353 MsG0380012568.01.T01:intron
TGGGTACAAAGCATTAACTA+TGG 0.569013 3:-19907407 MsG0380012568.01.T01:CDS
TAATTATGCAGGCTATCCCC+TGG 0.569103 3:-19908693 MsG0380012568.01.T01:intron
ATGAACATGTCGGCACCACC+TGG 0.573609 3:+19905809 None:intergenic
TTTGAGGTAAGAAAATATCT+CGG 0.574760 3:-19907364 MsG0380012568.01.T01:CDS
TAAAGCCATTGACACGAACT+GGG 0.575385 3:+19911986 None:intergenic
ATTAAAACCGTGTGATACAT+CGG 0.580619 3:+19905443 None:intergenic
TATTCTTCTTCCATTATTGG+GGG 0.582626 3:-19905535 MsG0380012568.01.T01:three_prime_UTR
CATAGAAGTGAGGAAGCAGA+TGG 0.583552 3:-19905660 MsG0380012568.01.T01:three_prime_UTR
ATGTTGTTGTGTTATAGTTG+TGG 0.587402 3:+19912080 None:intergenic
GTTTGGATTTCAAATTGGAG+TGG 0.598685 3:-19911908 MsG0380012568.01.T01:CDS
TGCAGTCGAACAAATCAAGA+AGG 0.599148 3:-19907508 MsG0380012568.01.T01:intron
TTCTCAAGTTGAGACATGGA+GGG 0.614245 3:+19910236 None:intergenic
AACATACAAACGCAGTGGAA+GGG 0.621085 3:+19905490 None:intergenic
TGATGCAGTGTGCTTTGATG+TGG 0.622176 3:-19910494 MsG0380012568.01.T01:CDS
CTGTTGCAGAATGGACTGCA+AGG 0.622394 3:-19910408 MsG0380012568.01.T01:intron
AAAATTCTCAAGTTGAGACA+TGG 0.622716 3:+19910232 None:intergenic
ATTCTCAAGTTGAGACATGG+AGG 0.633201 3:+19910235 None:intergenic
AAGACCTTATAAATTCATTG+GGG 0.634548 3:-19905718 MsG0380012568.01.T01:CDS
GAGCATACTTCAAGGAGCGG+AGG 0.639616 3:-19907540 MsG0380012568.01.T01:CDS
TACATTACCGATGTATCACA+CGG 0.641808 3:-19905450 MsG0380012568.01.T01:three_prime_UTR
AGCATAGCAAATGAACATGT+CGG 0.648099 3:+19905799 None:intergenic
AATGAGCATACTTCAAGGAG+CGG 0.658563 3:-19907543 MsG0380012568.01.T01:CDS
CATGTATATCTGATCTCAGG+GGG 0.663352 3:-19908630 MsG0380012568.01.T01:CDS
GATTAACTCTTCAATGCCAG+GGG 0.667326 3:+19908677 None:intergenic
ACTGAAACATACAAACGCAG+TGG 0.691718 3:+19905485 None:intergenic
ATTTAGGCTCGTAGACCAGG+TGG 0.708141 3:-19905824 MsG0380012568.01.T01:intron
GCATGTATATCTGATCTCAG+GGG 0.727166 3:-19908631 MsG0380012568.01.T01:CDS
AATCATTCCCTAAGAACACG+CGG 0.738798 3:+19905609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTCAATATATCAAAA+CGG + Chr3:19906741-19906760 None:intergenic 10.0%
!!! GATATTTTTTTTATTATCTA+TGG - Chr3:19905801-19905820 MsG0380012568.01.T01:CDS 10.0%
!!! TTAATTTTGAAAAAATAGAT+GGG + Chr3:19910844-19910863 None:intergenic 10.0%
!!! TTTAATTTTGAAAAAATAGA+TGG + Chr3:19910845-19910864 None:intergenic 10.0%
!! CAAAAAATAGAAAACAAAAA+GGG + Chr3:19911879-19911898 None:intergenic 15.0%
!! TACTGTTATAATAGAATTTA+GGG + Chr3:19908663-19908682 None:intergenic 15.0%
!! TCAAAAAATAGAAAACAAAA+AGG + Chr3:19911880-19911899 None:intergenic 15.0%
!! TTAAGAATTATATAAACCTT+TGG + Chr3:19905776-19905795 None:intergenic 15.0%
!!! AATAAATTTTCTCTAAATCA+TGG - Chr3:19909195-19909214 MsG0380012568.01.T01:intron 15.0%
!!! AGTTGTAATGATTATTTTTT+TGG - Chr3:19908985-19909004 MsG0380012568.01.T01:intron 15.0%
!!! ATTATTTTTGTTTTTGTAGT+AGG - Chr3:19911278-19911297 MsG0380012568.01.T01:intron 15.0%
!!! TAATTTTGAAAAAATAGATG+GGG + Chr3:19910843-19910862 None:intergenic 15.0%
!!! TATTTGTTTTGAAATTAGAA+AGG + Chr3:19910758-19910777 None:intergenic 15.0%
!! AAAAGCAATAAAATTAGCAA+AGG + Chr3:19909150-19909169 None:intergenic 20.0%
!! AAATTAATTTCAAACTTGCA+TGG + Chr3:19909694-19909713 None:intergenic 20.0%
!! AATAAGATATAACTTGAACA+TGG + Chr3:19908196-19908215 None:intergenic 20.0%
!! AGATTAATTCTCAATGTTAT+TGG - Chr3:19906967-19906986 MsG0380012568.01.T01:intron 20.0%
!! ATTTATTCTTCTTCCATTAT+TGG - Chr3:19912024-19912043 MsG0380012568.01.T01:exon 20.0%
!! CTACTGTTATAATAGAATTT+AGG + Chr3:19908664-19908683 None:intergenic 20.0%
!! TAAAAAAGAGAATTTAACTG+TGG - Chr3:19908264-19908283 MsG0380012568.01.T01:intron 20.0%
!! TACTATTACTAATATTGTAG+AGG - Chr3:19910302-19910321 MsG0380012568.01.T01:intron 20.0%
!! TAGAAAACCAAAAATAGTTA+TGG - Chr3:19906277-19906296 MsG0380012568.01.T01:intron 20.0%
!! TCTACAATATTAGTAATAGT+AGG + Chr3:19910303-19910322 None:intergenic 20.0%
!! TTGAAAGGAAAAATAAACAT+TGG + Chr3:19909759-19909778 None:intergenic 20.0%
!! TTTATTCTTCTTCCATTATT+GGG - Chr3:19912025-19912044 MsG0380012568.01.T01:exon 20.0%
!!! AACTATTTTTGGTTTTCTAT+AGG + Chr3:19906276-19906295 None:intergenic 20.0%
!!! CATATATAATTTCTAGTTGA+AGG + Chr3:19908062-19908081 None:intergenic 20.0%
!!! GAATTTTAGGTAAAGTTTTT+TGG - Chr3:19909814-19909833 MsG0380012568.01.T01:intron 20.0%
!!! TGATATATTGAATTTTACCA+TGG - Chr3:19906744-19906763 MsG0380012568.01.T01:intron 20.0%
!!! TTCTACTCAATTAATTTTCT+AGG + Chr3:19911359-19911378 None:intergenic 20.0%
! AAAAAAAAGACTTAGCTCAA+CGG - Chr3:19906080-19906099 MsG0380012568.01.T01:intron 25.0%
! AAAATGTCATTAGAAGTCTA+GGG + Chr3:19908451-19908470 None:intergenic 25.0%
! AAATACTAAACAAAATCAGC+CGG + Chr3:19907388-19907407 None:intergenic 25.0%
! AAGACCTTATAAATTCATTG+GGG - Chr3:19911844-19911863 MsG0380012568.01.T01:CDS 25.0%
! AAGTATTCAAGTGTAATTCA+GGG - Chr3:19910864-19910883 MsG0380012568.01.T01:intron 25.0%
! AAGTTAGATTGCATTTACAA+GGG + Chr3:19908594-19908613 None:intergenic 25.0%
! AATCCTATTCAATCACTATT+AGG + Chr3:19906236-19906255 None:intergenic 25.0%
! AATGCTATGTGTAAAAGAAA+GGG - Chr3:19907610-19907629 MsG0380012568.01.T01:intron 25.0%
! ACTTGTGAAAATTGTTTGAA+AGG + Chr3:19909774-19909793 None:intergenic 25.0%
! AGTCTAATCAAAAAGTTGTT+TGG + Chr3:19911564-19911583 None:intergenic 25.0%
! ATATTCTAACATTTGTCGAT+TGG - Chr3:19906383-19906402 MsG0380012568.01.T01:intron 25.0%
! ATTGTTTCCACATTCTAAAT+TGG + Chr3:19909568-19909587 None:intergenic 25.0%
! CAAGACCTTATAAATTCATT+GGG - Chr3:19911843-19911862 MsG0380012568.01.T01:CDS 25.0%
! GAATTATATAAACCTTTGGA+AGG + Chr3:19905772-19905791 None:intergenic 25.0%
! GGTCTAACAAAAAAATATCA+TGG + Chr3:19908697-19908716 None:intergenic 25.0%
! TAAAATGTCATTAGAAGTCT+AGG + Chr3:19908452-19908471 None:intergenic 25.0%
! TAAATGCAATCTAACTTGAA+AGG - Chr3:19908597-19908616 MsG0380012568.01.T01:intron 25.0%
! TAATGCTATGTGTAAAAGAA+AGG - Chr3:19907609-19907628 MsG0380012568.01.T01:intron 25.0%
! TACAATGTGTTATCAAATAG+AGG - Chr3:19909422-19909441 MsG0380012568.01.T01:intron 25.0%
! TCAAGACCTTATAAATTCAT+TGG - Chr3:19911842-19911861 MsG0380012568.01.T01:CDS 25.0%
! TTAGTGTTATATTGTAGATG+AGG + Chr3:19906362-19906381 None:intergenic 25.0%
! TTATTCTTCTTCCATTATTG+GGG - Chr3:19912026-19912045 MsG0380012568.01.T01:exon 25.0%
!! AAAGTATTCAAGTGTAATTC+AGG - Chr3:19910863-19910882 MsG0380012568.01.T01:intron 25.0%
!! ATATTGAATTTTACCATGGT+AGG - Chr3:19906748-19906767 MsG0380012568.01.T01:intron 25.0%
!! ATTAGTGTTTTCTCAAATAG+TGG - Chr3:19908333-19908352 MsG0380012568.01.T01:intron 25.0%
!! ATTTGTTGAATTTCATCATG+GGG - Chr3:19906640-19906659 MsG0380012568.01.T01:intron 25.0%
!! CGTTTAAGATATATTTGGTT+TGG - Chr3:19908122-19908141 MsG0380012568.01.T01:intron 25.0%
!! GACAACAGAGTTTTTATTAA+AGG + Chr3:19906581-19906600 None:intergenic 25.0%
!! TGCTTCGTTTAAGATATATT+TGG - Chr3:19908117-19908136 MsG0380012568.01.T01:intron 25.0%
!! TGGTTTTCAAATCTTTTTAG+TGG + Chr3:19909228-19909247 None:intergenic 25.0%
!! TTTGAGGTAAGAAAATATCT+CGG - Chr3:19910198-19910217 MsG0380012568.01.T01:intron 25.0%
!! TTTTTGTCAAATCAGTGTTT+TGG + Chr3:19908722-19908741 None:intergenic 25.0%
!!! AAGTGTATTTTTAGTAACAG+TGG + Chr3:19906853-19906872 None:intergenic 25.0%
!!! ATGTCATTTTGACTTATCTT+AGG - Chr3:19911470-19911489 MsG0380012568.01.T01:intron 25.0%
!!! GATTTGTTGAATTTCATCAT+GGG - Chr3:19906639-19906658 MsG0380012568.01.T01:intron 25.0%
!!! GTTTTGAAAATTAAACTCCA+AGG - Chr3:19910265-19910284 MsG0380012568.01.T01:CDS 25.0%
!!! TGATTTGTTGAATTTCATCA+TGG - Chr3:19906638-19906657 MsG0380012568.01.T01:intron 25.0%
!!! TTTTTTGAATCATAGAAGTG+AGG - Chr3:19911892-19911911 MsG0380012568.01.T01:CDS 25.0%
AAAACCAGCCAAAACTTTAA+AGG - Chr3:19908495-19908514 MsG0380012568.01.T01:intron 30.0%
AAAATATCTCGGATATCTTG+AGG - Chr3:19910209-19910228 MsG0380012568.01.T01:intron 30.0%
AAACCAGCCAAAACTTTAAA+GGG - Chr3:19908496-19908515 MsG0380012568.01.T01:intron 30.0%
AACATAGATTTCCACCTTAT+AGG + Chr3:19909629-19909648 None:intergenic 30.0%
AAGAAAAGAAACGTTGTTGT+TGG + Chr3:19905449-19905468 None:intergenic 30.0%
AATCAAGACTCAAATATTGC+GGG + Chr3:19910517-19910536 None:intergenic 30.0%
ACAATAAAACTGCAGAATAG+CGG - Chr3:19908366-19908385 MsG0380012568.01.T01:intron 30.0%
ACAATGCAACATTACTTCTT+AGG + Chr3:19908151-19908170 None:intergenic 30.0%
ACTATAGTGTTATAGCATTG+CGG - Chr3:19907732-19907751 MsG0380012568.01.T01:intron 30.0%
AGAAAATAAAGTAGGCAGTT+AGG + Chr3:19908767-19908786 None:intergenic 30.0%
AGAGTTAATCCAGAAACTAA+AGG - Chr3:19908898-19908917 MsG0380012568.01.T01:intron 30.0%
AGTATTCAAGTGTAATTCAG+GGG - Chr3:19910865-19910884 MsG0380012568.01.T01:intron 30.0%
AGTGAGAAGACAAAAAATGT+TGG + Chr3:19905523-19905542 None:intergenic 30.0%
AGTTAAAAATTCCAGGATCA+TGG - Chr3:19910135-19910154 MsG0380012568.01.T01:intron 30.0%
ATCACTATTAGGCACTAAAT+AGG + Chr3:19906225-19906244 None:intergenic 30.0%
ATCAGAACCAAATCTCAAAA+AGG - Chr3:19905627-19905646 MsG0380012568.01.T01:three_prime_UTR 30.0%
ATGAATCCAGATATAGTGAA+GGG - Chr3:19907970-19907989 MsG0380012568.01.T01:intron 30.0%
ATGATTCTCCTTAATTATGC+AGG - Chr3:19908858-19908877 MsG0380012568.01.T01:intron 30.0%
ATGTTGTTGTGTTATAGTTG+TGG + Chr3:19905485-19905504 None:intergenic 30.0%
ATTAAAACCGTGTGATACAT+CGG + Chr3:19912122-19912141 None:intergenic 30.0%
ATTGCATGAATACGTGAAAT+CGG - Chr3:19911034-19911053 MsG0380012568.01.T01:intron 30.0%
CAAAAAGTTGTTTGGTTAGT+TGG + Chr3:19911556-19911575 None:intergenic 30.0%
CAAAAATAGTTATGGTACTG+TGG - Chr3:19906285-19906304 MsG0380012568.01.T01:intron 30.0%
CAAGTTAGATTGCATTTACA+AGG + Chr3:19908595-19908614 None:intergenic 30.0%
CAATCAAGACTCAAATATTG+CGG + Chr3:19910518-19910537 None:intergenic 30.0%
CAATTATATCAGCTTTCTAG+TGG + Chr3:19905908-19905927 None:intergenic 30.0%
CATAAGAAACTGTTATGTTG+AGG - Chr3:19906539-19906558 MsG0380012568.01.T01:intron 30.0%
GAAAAATATAGTGTAGACCA+GGG - Chr3:19906405-19906424 MsG0380012568.01.T01:intron 30.0%
GAAAGCAGAGAAAATAAAGT+AGG + Chr3:19908775-19908794 None:intergenic 30.0%
GAATGCACAAATATGAAAAC+AGG + Chr3:19911532-19911551 None:intergenic 30.0%
GATATAGAACTTTAGTGTAG+TGG - Chr3:19907816-19907835 MsG0380012568.01.T01:intron 30.0%
GTTAAAAATTCCAGGATCAT+GGG - Chr3:19910136-19910155 MsG0380012568.01.T01:intron 30.0%
GTTACCCCAATGAATTTATA+AGG + Chr3:19911851-19911870 None:intergenic 30.0%
GTTATTCAAGAAAACCTAAG+AGG + Chr3:19911680-19911699 None:intergenic 30.0%
TAAAATTACACCCCCAATAA+TGG + Chr3:19912040-19912059 None:intergenic 30.0%
TAAGAATGACACAGCAAATT+AGG + Chr3:19911656-19911675 None:intergenic 30.0%
TATTCTTCTTCCATTATTGG+GGG - Chr3:19912027-19912046 MsG0380012568.01.T01:exon 30.0%
TCAGAACCAAATCTCAAAAA+GGG - Chr3:19905628-19905647 MsG0380012568.01.T01:three_prime_UTR 30.0%
TCTCACATCTTAAACATGAA+TGG + Chr3:19911167-19911186 None:intergenic 30.0%
TGTAAATTCCTGTACAAGTA+TGG + Chr3:19910697-19910716 None:intergenic 30.0%
TTAGCAAAGGAAATTAAGAG+AGG + Chr3:19909137-19909156 None:intergenic 30.0%
TTCCACATTCTAAATTGGAA+TGG + Chr3:19909563-19909582 None:intergenic 30.0%
TTCGTCAAATGATCAATGTA+TGG - Chr3:19908957-19908976 MsG0380012568.01.T01:intron 30.0%
TTGTACATTGCTTACCTATA+AGG - Chr3:19909612-19909631 MsG0380012568.01.T01:intron 30.0%
TTTGTTGAATTTCATCATGG+GGG - Chr3:19906641-19906660 MsG0380012568.01.T01:intron 30.0%
! AGCAACTTTTCTACCAAATA+AGG + Chr3:19910789-19910808 None:intergenic 30.0%
! CAACAATTTAAGATCACTGT+CGG + Chr3:19911595-19911614 None:intergenic 30.0%
! CACAGTACCATAACTATTTT+TGG + Chr3:19906287-19906306 None:intergenic 30.0%
! CTTGCATTAGACTTTTATCT+TGG - Chr3:19907550-19907569 MsG0380012568.01.T01:CDS 30.0%
! GAAGTTTTCTCCTTTGATTA+TGG - Chr3:19905696-19905715 MsG0380012568.01.T01:exon 30.0%
! GCAACTTTTCTACCAAATAA+GGG + Chr3:19910788-19910807 None:intergenic 30.0%
! TACAAAGCATTAACTATGGT+CGG - Chr3:19910159-19910178 MsG0380012568.01.T01:intron 30.0%
! TGACAACATTGATTGAAAGT+AGG + Chr3:19909332-19909351 None:intergenic 30.0%
! TTGAGAATTTTCTTCAGCAA+AGG - Chr3:19907342-19907361 MsG0380012568.01.T01:intron 30.0%
! TTGTATTTTCACAGAGCAAT+GGG - Chr3:19907251-19907270 MsG0380012568.01.T01:intron 30.0%
!! AAAATTCTCAAGTTGAGACA+TGG + Chr3:19907333-19907352 None:intergenic 30.0%
!! AATTTCTAGTTGAAGGCATA+AGG + Chr3:19908055-19908074 None:intergenic 30.0%
!! AGATTTGGTTCTGATTCAAA+CGG + Chr3:19905622-19905641 None:intergenic 30.0%
!! ATTGGCTTCTATGTTTTCTT+GGG - Chr3:19906985-19907004 MsG0380012568.01.T01:intron 30.0%
!! ATTTCTAGTTGAAGGCATAA+GGG + Chr3:19908054-19908073 None:intergenic 30.0%
!! CACGGTTTTAATAGTATGTT+TGG - Chr3:19912130-19912149 MsG0380012568.01.T01:five_prime_UTR 30.0%
!! CATGTTTAAGCTTTGTTACT+AGG - Chr3:19911109-19911128 MsG0380012568.01.T01:intron 30.0%
!! GTAATCACATTAAGTTGATC+AGG - Chr3:19907499-19907518 MsG0380012568.01.T01:intron 30.0%
!! TAGTGGATTAGAGGTTATAT+CGG - Chr3:19910394-19910413 MsG0380012568.01.T01:intron 30.0%
!! TTGATGATGGATAGAAATTC+TGG - Chr3:19907029-19907048 MsG0380012568.01.T01:intron 30.0%
!! TTTGCCAATCAACTACTTTT+TGG - Chr3:19909965-19909984 MsG0380012568.01.T01:intron 30.0%
!!! ATGCTTTTTTCTGCACATTT+AGG - Chr3:19911722-19911741 MsG0380012568.01.T01:intron 30.0%
!!! TATTGGCTTCTATGTTTTCT+TGG - Chr3:19906984-19907003 MsG0380012568.01.T01:intron 30.0%
!!! TTTCTGTGTTGTTTTGATGA+TGG - Chr3:19907016-19907035 MsG0380012568.01.T01:intron 30.0%
AAATACCGATCACCCTTATT+TGG - Chr3:19910773-19910792 MsG0380012568.01.T01:intron 35.0%
AACCAAGTCTCAGACATAAA+AGG + Chr3:19911194-19911213 None:intergenic 35.0%
AAGCATGTATATCTGATCTC+AGG - Chr3:19908929-19908948 MsG0380012568.01.T01:intron 35.0%
ACCAAATAAGCATTAGGAAG+GGG + Chr3:19908090-19908109 None:intergenic 35.0%
ACCAACTAAGCTACACTTAA+GGG + Chr3:19905955-19905974 None:intergenic 35.0%
ACGAAAATGAGCATACTTCA+AGG - Chr3:19910014-19910033 MsG0380012568.01.T01:intron 35.0%
ACTAGTACTATAGACTTGCA+AGG - Chr3:19908626-19908645 MsG0380012568.01.T01:CDS 35.0%
ACTGTTGGAAATTCACAAGT+TGG - Chr3:19905727-19905746 MsG0380012568.01.T01:CDS 35.0%
AGCATAGCAAATGAACATGT+CGG + Chr3:19911766-19911785 None:intergenic 35.0%
AGCATGTATATCTGATCTCA+GGG - Chr3:19908930-19908949 MsG0380012568.01.T01:intron 35.0%
AGCTGACAGTTAAAAATTCC+AGG - Chr3:19910128-19910147 MsG0380012568.01.T01:intron 35.0%
AGGTGTCTTTGACAAAATAG+AGG - Chr3:19910888-19910907 MsG0380012568.01.T01:intron 35.0%
ATAGTTATGGTACTGTGGTT+TGG - Chr3:19906290-19906309 MsG0380012568.01.T01:intron 35.0%
ATCAAAAGAGTTTACTCTCC+CGG - Chr3:19908006-19908025 MsG0380012568.01.T01:intron 35.0%
ATCCAGAAACTAAAGGCTAA+TGG - Chr3:19908905-19908924 MsG0380012568.01.T01:intron 35.0%
ATTTAGTGACGAATTCAGAG+AGG - Chr3:19909097-19909116 MsG0380012568.01.T01:intron 35.0%
CACCTCCTATATAGTCATAT+AGG - Chr3:19910420-19910439 MsG0380012568.01.T01:CDS 35.0%
CCAAACCATGAACATAAGTT+AGG - Chr3:19909715-19909734 MsG0380012568.01.T01:intron 35.0%
CCTAACTTATGTTCATGGTT+TGG + Chr3:19909718-19909737 None:intergenic 35.0%
CGGACAATGTCAATAATGTT+CGG - Chr3:19906100-19906119 MsG0380012568.01.T01:intron 35.0%
CTGGTCAATTCAGACATATT+TGG - Chr3:19908825-19908844 MsG0380012568.01.T01:intron 35.0%
GACAAAAAATGTTGGATCTG+AGG + Chr3:19905515-19905534 None:intergenic 35.0%
GACCAAATAAGCATTAGGAA+GGG + Chr3:19908091-19908110 None:intergenic 35.0%
GATGAATCCAGATATAGTGA+AGG - Chr3:19907969-19907988 MsG0380012568.01.T01:intron 35.0%
GCTTCCAAAAAGTAGTTGAT+TGG + Chr3:19909972-19909991 None:intergenic 35.0%
GGAAAAATATAGTGTAGACC+AGG - Chr3:19906404-19906423 MsG0380012568.01.T01:intron 35.0%
GGTACGTTTGGATTTCAAAT+TGG - Chr3:19905649-19905668 MsG0380012568.01.T01:three_prime_UTR 35.0%
GTAGCAGTATTGTCAAATTG+CGG - Chr3:19907699-19907718 MsG0380012568.01.T01:intron 35.0%
GTAGTAGGATCCTATTATCT+CGG - Chr3:19911293-19911312 MsG0380012568.01.T01:intron 35.0%
GTGCCTAATAGTGATTGAAT+AGG - Chr3:19906230-19906249 MsG0380012568.01.T01:intron 35.0%
GTGTTATCAATTGTAGATCG+CGG + Chr3:19909503-19909522 None:intergenic 35.0%
GTTTGGATTTCAAATTGGAG+TGG - Chr3:19905654-19905673 MsG0380012568.01.T01:three_prime_UTR 35.0%
TAAATCGCAACCGAGATAAT+AGG + Chr3:19911306-19911325 None:intergenic 35.0%
TAATACCTGAGCATGAGATA+CGG + Chr3:19910479-19910498 None:intergenic 35.0%
TACAAGAGCTGTTTATGACT+AGG - Chr3:19910563-19910582 MsG0380012568.01.T01:intron 35.0%
TACATTACCGATGTATCACA+CGG - Chr3:19912112-19912131 MsG0380012568.01.T01:five_prime_UTR 35.0%
TACATTGCTTACCTATAAGG+TGG - Chr3:19909615-19909634 MsG0380012568.01.T01:intron 35.0%
TACCAACTAAGCTACACTTA+AGG + Chr3:19905956-19905975 None:intergenic 35.0%
TACGTAAGACTTAGCTCAAT+TGG - Chr3:19905928-19905947 MsG0380012568.01.T01:intron 35.0%
TAGTTATGGTACTGTGGTTT+GGG - Chr3:19906291-19906310 MsG0380012568.01.T01:intron 35.0%
TATTTGAGTCTTGATTGCTC+TGG - Chr3:19910521-19910540 MsG0380012568.01.T01:CDS 35.0%
TCAATGTAGCTTCATGACTT+AGG - Chr3:19907452-19907471 MsG0380012568.01.T01:intron 35.0%
TCATATTTCTCTACCTACCA+TGG + Chr3:19906764-19906783 None:intergenic 35.0%
TGACAGATTCTATATATGCC+AGG + Chr3:19909262-19909281 None:intergenic 35.0%
TGACCAAATAAGCATTAGGA+AGG + Chr3:19908092-19908111 None:intergenic 35.0%
TGCAAGTCTATAGTACTAGT+AGG + Chr3:19908626-19908645 None:intergenic 35.0%
TGGTAGGTAGAGAAATATGA+TGG - Chr3:19906764-19906783 MsG0380012568.01.T01:intron 35.0%
TGTTATCAAATAGAGGCTGT+TGG - Chr3:19909429-19909448 MsG0380012568.01.T01:intron 35.0%
TGTTATCAATTGTAGATCGC+GGG + Chr3:19909502-19909521 None:intergenic 35.0%
TTCACAAGTTTGCATTGCTA+CGG - Chr3:19909785-19909804 MsG0380012568.01.T01:intron 35.0%
TTCTAACCCTTCACTATATC+TGG + Chr3:19907979-19907998 None:intergenic 35.0%
TTCTACCAAATAAGGGTGAT+CGG + Chr3:19910781-19910800 None:intergenic 35.0%
TTGGCAAAAATGTTCTCTTG+TGG + Chr3:19909953-19909972 None:intergenic 35.0%
TTGTCAAATTGCGGATATAG+TGG - Chr3:19907708-19907727 MsG0380012568.01.T01:intron 35.0%
! AAAGAAACGTTGTTGTTGGT+TGG + Chr3:19905445-19905464 None:intergenic 35.0%
! AACCAGCCAAAACTTTAAAG+GGG - Chr3:19908497-19908516 MsG0380012568.01.T01:intron 35.0%
! AATCTCAAAAAGGGTACGTT+TGG - Chr3:19905637-19905656 MsG0380012568.01.T01:three_prime_UTR 35.0%
! ACGTATTCATGCAATTTTGC+AGG + Chr3:19911029-19911048 None:intergenic 35.0%
! ATCACTGCTATTTAAAACCC+TGG + Chr3:19906425-19906444 None:intergenic 35.0%
! ATGGAAGCTTTGATCAGTTA+TGG - Chr3:19905547-19905566 MsG0380012568.01.T01:three_prime_UTR 35.0%
! CGTATTCATGCAATTTTGCA+GGG + Chr3:19911028-19911047 None:intergenic 35.0%
! CTCCATTCCAATTTAGAATG+TGG - Chr3:19909558-19909577 MsG0380012568.01.T01:intron 35.0%
! GCTACGGCATTAAGAATTTT+AGG - Chr3:19909801-19909820 MsG0380012568.01.T01:intron 35.0%
! GGAGTATTTCGCTTTAGATT+TGG - Chr3:19907473-19907492 MsG0380012568.01.T01:intron 35.0%
! GTTGTATTTTCACAGAGCAA+TGG - Chr3:19907250-19907269 MsG0380012568.01.T01:intron 35.0%
! TATTTCGCTTTAGATTTGGC+TGG - Chr3:19907477-19907496 MsG0380012568.01.T01:intron 35.0%
! TGAATTTTCACGAGTCTGTT+CGG + Chr3:19910939-19910958 None:intergenic 35.0%
! TGGAAGCTTTGATCAGTTAT+GGG - Chr3:19905548-19905567 MsG0380012568.01.T01:three_prime_UTR 35.0%
! TGGGTACAAAGCATTAACTA+TGG - Chr3:19910155-19910174 MsG0380012568.01.T01:intron 35.0%
! TTTTGTCTTCTCACTGTACA+TGG - Chr3:19905528-19905547 MsG0380012568.01.T01:three_prime_UTR 35.0%
! TTTTTGATCAAGTAGCCTAG+TGG + Chr3:19906061-19906080 None:intergenic 35.0%
!! AAACTCGGTTTGGTAGTTAA+TGG + Chr3:19907911-19907930 None:intergenic 35.0%
!! AGTTAAGGAGTGGATTGATA+AGG - Chr3:19906320-19906339 MsG0380012568.01.T01:intron 35.0%
!! AGTTGGTCATTTTGAGAACA+TGG - Chr3:19905744-19905763 MsG0380012568.01.T01:CDS 35.0%
!! TGTTCCTTTTGAAGAAGCAT+TGG - Chr3:19907280-19907299 MsG0380012568.01.T01:intron 35.0%
!!! AACGTACCCTTTTTGAGATT+TGG + Chr3:19905637-19905656 None:intergenic 35.0%
!!! AAGACACCCCTTTAAAGTTT+TGG + Chr3:19908506-19908525 None:intergenic 35.0%
AAAACCAGTACATGATGTCC+TGG - Chr3:19909241-19909260 MsG0380012568.01.T01:intron 40.0%
AAACATACAAACGCAGTGGA+AGG + Chr3:19912076-19912095 None:intergenic 40.0%
AAATAGGCACCTCTCTCAAT+CGG + Chr3:19906209-19906228 None:intergenic 40.0%
AAATTCATCCGCGTGTTCTT+AGG - Chr3:19911945-19911964 MsG0380012568.01.T01:CDS 40.0%
AACATACAAACGCAGTGGAA+GGG + Chr3:19912075-19912094 None:intergenic 40.0%
AACATGAAAGACTCAAAGCC+AGG + Chr3:19911095-19911114 None:intergenic 40.0%
AACATGTTGTCCTCTTTCGA+AGG - Chr3:19906889-19906908 MsG0380012568.01.T01:intron 40.0%
AAGCTCTTGCCATTGCAAAA+AGG - Chr3:19907648-19907667 MsG0380012568.01.T01:intron 40.0%
AATCATTCCCTAAGAACACG+CGG + Chr3:19911956-19911975 None:intergenic 40.0%
AATGAGCATACTTCAAGGAG+CGG - Chr3:19910019-19910038 MsG0380012568.01.T01:intron 40.0%
AATGCAAGAGCAATGCCAAA+GGG + Chr3:19907538-19907557 None:intergenic 40.0%
AATTCATCCGCGTGTTCTTA+GGG - Chr3:19911946-19911965 MsG0380012568.01.T01:CDS 40.0%
ACACATTATGTGTGGAGAAG+TGG + Chr3:19906028-19906047 None:intergenic 40.0%
ACATGTTGTCCTCTTTCGAA+GGG - Chr3:19906890-19906909 MsG0380012568.01.T01:intron 40.0%
ACATTATGTGTGGAGAAGTG+GGG + Chr3:19906026-19906045 None:intergenic 40.0%
ACGTGAAATCGGCATGAAAT+CGG - Chr3:19911045-19911064 MsG0380012568.01.T01:intron 40.0%
ACTGAAACATACAAACGCAG+TGG + Chr3:19912080-19912099 None:intergenic 40.0%
AGAGCTGTTTATGACTAGGA+AGG - Chr3:19910567-19910586 MsG0380012568.01.T01:intron 40.0%
AGAGTCACACACATTATGTG+TGG + Chr3:19906036-19906055 None:intergenic 40.0%
AGATCTTGCATCAAACCGAA+AGG + Chr3:19911428-19911447 None:intergenic 40.0%
AGCGTATTGTGGAACAATAG+TGG + Chr3:19909396-19909415 None:intergenic 40.0%
AGCTCTTGCCATTGCAAAAA+GGG - Chr3:19907649-19907668 MsG0380012568.01.T01:intron 40.0%
ATCTTGCATCAAACCGAAAG+GGG + Chr3:19911426-19911445 None:intergenic 40.0%
ATGAGTACATCATACAGGCA+TGG + Chr3:19907935-19907954 None:intergenic 40.0%
ATGTCTGAATTGACCAGTTC+AGG + Chr3:19908822-19908841 None:intergenic 40.0%
ATTCAAGTGTAATTCAGGGG+AGG - Chr3:19910868-19910887 MsG0380012568.01.T01:intron 40.0%
ATTGCTAAACCCTTCGAAAG+AGG + Chr3:19906902-19906921 None:intergenic 40.0%
CACATTATGTGTGGAGAAGT+GGG + Chr3:19906027-19906046 None:intergenic 40.0%
CACGTGACCAAATAAGCATT+AGG + Chr3:19908096-19908115 None:intergenic 40.0%
CACTGATGAGTACATCATAC+AGG + Chr3:19907940-19907959 None:intergenic 40.0%
CAGCTCCTAACTTATGTTCA+TGG + Chr3:19909723-19909742 None:intergenic 40.0%
CATGAACATAAGTTAGGAGC+TGG - Chr3:19909721-19909740 MsG0380012568.01.T01:intron 40.0%
CATGTATATCTGATCTCAGG+GGG - Chr3:19908932-19908951 MsG0380012568.01.T01:intron 40.0%
CCAGGCCTATATGACTATAT+AGG + Chr3:19910428-19910447 None:intergenic 40.0%
CCTATATAGTCATATAGGCC+TGG - Chr3:19910425-19910444 MsG0380012568.01.T01:CDS 40.0%
CCTGTACAAGTATGGACTTT+GGG + Chr3:19910689-19910708 None:intergenic 40.0%
CGGAGAATCACAGTTAAATG+TGG - Chr3:19906476-19906495 MsG0380012568.01.T01:intron 40.0%
CTCTTCATACACGTGTTAGA+AGG + Chr3:19910655-19910674 None:intergenic 40.0%
GATCTTGCATCAAACCGAAA+GGG + Chr3:19911427-19911446 None:intergenic 40.0%
GATTAACTCTTCAATGCCAG+GGG + Chr3:19908888-19908907 None:intergenic 40.0%
GCATGTATATCTGATCTCAG+GGG - Chr3:19908931-19908950 MsG0380012568.01.T01:intron 40.0%
GGATCTTGCATCTCTACTAT+AGG - Chr3:19907674-19907693 MsG0380012568.01.T01:intron 40.0%
GGATTAACTCTTCAATGCCA+GGG + Chr3:19908889-19908908 None:intergenic 40.0%
GGCCTATATGACTATATAGG+AGG + Chr3:19910425-19910444 None:intergenic 40.0%
GTCAAAATGACATACGACCA+AGG + Chr3:19911463-19911482 None:intergenic 40.0%
GTGAGTGACTTGATGAACAT+AGG - Chr3:19909588-19909607 MsG0380012568.01.T01:intron 40.0%
TAAACCTAATGGAGCTAACC+AGG + Chr3:19910446-19910465 None:intergenic 40.0%
TAAAGCCATTGACACGAACT+GGG + Chr3:19905579-19905598 None:intergenic 40.0%
TAAAGTAGGCAGTTAGGCTT+TGG + Chr3:19908761-19908780 None:intergenic 40.0%
TAAGGGCTGTAAGTTACGTT+TGG + Chr3:19908037-19908056 None:intergenic 40.0%
TAAGTTACGTTTGGAGAGAC+CGG + Chr3:19908028-19908047 None:intergenic 40.0%
TAATGCAAGAGCAATGCCAA+AGG + Chr3:19907539-19907558 None:intergenic 40.0%
TAGCTCCATTAGGTTTAGGA+AGG - Chr3:19910449-19910468 MsG0380012568.01.T01:CDS 40.0%
TATTCACGATCTGGATCAGT+AGG + Chr3:19910984-19911003 None:intergenic 40.0%
TCATACAGGCATGGAAAACT+CGG + Chr3:19907926-19907945 None:intergenic 40.0%
TCCATTAGGTTTAGGAAGGT+GGG - Chr3:19910453-19910472 MsG0380012568.01.T01:CDS 40.0%
TCCCCTTCCTAATGCTTATT+TGG - Chr3:19908086-19908105 MsG0380012568.01.T01:intron 40.0%
TCCCTTAAGTGTAGCTTAGT+TGG - Chr3:19905951-19905970 MsG0380012568.01.T01:intron 40.0%
TCCTGTACAAGTATGGACTT+TGG + Chr3:19910690-19910709 None:intergenic 40.0%
TCTCCAATTGTATCCTGAAC+TGG - Chr3:19908806-19908825 MsG0380012568.01.T01:intron 40.0%
TGACCAGTTCAGGATACAAT+TGG + Chr3:19908812-19908831 None:intergenic 40.0%
TGAGTAGAATGCTTCGATCT+TGG - Chr3:19911370-19911389 MsG0380012568.01.T01:intron 40.0%
TGCAGTCGAACAAATCAAGA+AGG - Chr3:19910054-19910073 MsG0380012568.01.T01:intron 40.0%
TGGATTAACTCTTCAATGCC+AGG + Chr3:19908890-19908909 None:intergenic 40.0%
TGTCGCGGTCTTTGATATTA+CGG - Chr3:19906456-19906475 MsG0380012568.01.T01:intron 40.0%
TTGAATAGGATTACCTCCAG+TGG - Chr3:19906244-19906263 MsG0380012568.01.T01:intron 40.0%
TTTCTATAGGTTCCTTCCAC+TGG + Chr3:19906263-19906282 None:intergenic 40.0%
! AAACGTTGTTGTTGGTTGGT+TGG + Chr3:19905441-19905460 None:intergenic 40.0%
! AGATCCAACCCTTTTTGCAA+TGG + Chr3:19907660-19907679 None:intergenic 40.0%
! ATGATCTTGCTATCCCCTTT+CGG - Chr3:19911410-19911429 MsG0380012568.01.T01:intron 40.0%
! CAGGGATTTTACTCAACTCA+GGG + Chr3:19911010-19911029 None:intergenic 40.0%
! GAATTTTCACGAGTCTGTTC+GGG + Chr3:19910938-19910957 None:intergenic 40.0%
! GTTTTGTGTCTGAGTTTAGG+CGG - Chr3:19906161-19906180 MsG0380012568.01.T01:intron 40.0%
! TACCTGGGATAATTTGTGCA+GGG - Chr3:19905978-19905997 MsG0380012568.01.T01:intron 40.0%
! TATTTTCACAGAGCAATGGG+TGG - Chr3:19907254-19907273 MsG0380012568.01.T01:intron 40.0%
! TGGTTAGCTCCATTAGGTTT+AGG - Chr3:19910445-19910464 MsG0380012568.01.T01:CDS 40.0%
! TGTGTCATTCTTAGCCTCTT+AGG - Chr3:19911663-19911682 MsG0380012568.01.T01:intron 40.0%
! TGTTGTTGGTTGGTTGGTTA+AGG + Chr3:19905435-19905454 None:intergenic 40.0%
!! AAAGGGGTGTCTTGATTCAA+CGG - Chr3:19908513-19908532 MsG0380012568.01.T01:intron 40.0%
!! ATTCTCAAGTTGAGACATGG+AGG + Chr3:19907330-19907349 None:intergenic 40.0%
!! ATTCTGGAGCTATGGAAGAA+TGG - Chr3:19907045-19907064 MsG0380012568.01.T01:intron 40.0%
!! GACATGTTCATTTGCTATGC+TGG - Chr3:19911765-19911784 MsG0380012568.01.T01:intron 40.0%
!! GATCTCGATTTTGACAACCT+TGG - Chr3:19911443-19911462 MsG0380012568.01.T01:intron 40.0%
!! GCAGTTTTGTGTCTGAGTTT+AGG - Chr3:19906158-19906177 MsG0380012568.01.T01:intron 40.0%
!! GGATAGAAATTCTGGAGCTA+TGG - Chr3:19907037-19907056 MsG0380012568.01.T01:intron 40.0%
!! TAAGGAGTGGATTGATAAGG+AGG - Chr3:19906323-19906342 MsG0380012568.01.T01:intron 40.0%
!! TGCCATTAGCCTTTAGTTTC+TGG + Chr3:19908910-19908929 None:intergenic 40.0%
!! TGCCTTTTATGTCTGAGACT+TGG - Chr3:19911189-19911208 MsG0380012568.01.T01:intron 40.0%
!! TTCTCAAGTTGAGACATGGA+GGG + Chr3:19907329-19907348 None:intergenic 40.0%
!!! CAACTACTTTTTGGAAGCTC+TGG - Chr3:19909974-19909993 MsG0380012568.01.T01:intron 40.0%
!!! TGGAGTGTGATTTTTAGCTC+TGG + Chr3:19908176-19908195 None:intergenic 40.0%
!!! TGTCAAATCAGTGTTTTGGC+TGG + Chr3:19908718-19908737 None:intergenic 40.0%
AACTCAGACACAAAACTGCG+AGG + Chr3:19906157-19906176 None:intergenic 45.0%
AAGTTACGTTTGGAGAGACC+GGG + Chr3:19908027-19908046 None:intergenic 45.0%
AGCACTGTAGCGCACAAAAT+TGG - Chr3:19909364-19909383 MsG0380012568.01.T01:intron 45.0%
AGCCGGTCTCAATCTTACTT+TGG + Chr3:19907371-19907390 None:intergenic 45.0%
ATAGGATTACCTCCAGTGGA+AGG - Chr3:19906248-19906267 MsG0380012568.01.T01:intron 45.0%
ATCAACCCAGTTCGTGTCAA+TGG - Chr3:19905571-19905590 MsG0380012568.01.T01:three_prime_UTR 45.0%
ATGCAAGAGCAATGCCAAAG+GGG + Chr3:19907537-19907556 None:intergenic 45.0%
ATGCTTTGTACCCATGATCC+TGG + Chr3:19910149-19910168 None:intergenic 45.0%
ATTATGGCTGCTGCTACTGT+TGG - Chr3:19905712-19905731 MsG0380012568.01.T01:exon 45.0%
CAATCGGAAGTCAAACGAAG+TGG + Chr3:19906193-19906212 None:intergenic 45.0%
CAGCAGTGCTGTAGATTTGT+AGG - Chr3:19907877-19907896 MsG0380012568.01.T01:intron 45.0%
CAGGAAAAGCTGTTGCAGAA+TGG - Chr3:19907145-19907164 MsG0380012568.01.T01:intron 45.0%
CATAGAAGTGAGGAAGCAGA+TGG - Chr3:19911902-19911921 MsG0380012568.01.T01:CDS 45.0%
CCAGGATGGTTAGAATCGTA+TGG + Chr3:19911077-19911096 None:intergenic 45.0%
CCATACGATTCTAACCATCC+TGG - Chr3:19911074-19911093 MsG0380012568.01.T01:intron 45.0%
CCCAAAGTCCATACTTGTAC+AGG - Chr3:19910686-19910705 MsG0380012568.01.T01:intron 45.0%
CGAGGTCTGAATTCAAACCA+GGG + Chr3:19906139-19906158 None:intergenic 45.0%
CGCCAAAGTAAGATTGAGAC+CGG - Chr3:19907366-19907385 MsG0380012568.01.T01:CDS 45.0%
CGGTCTCAATCTTACTTTGG+CGG + Chr3:19907368-19907387 None:intergenic 45.0%
CGTGAAATCGGCATGAAATC+GGG - Chr3:19911046-19911065 MsG0380012568.01.T01:intron 45.0%
CTCCATTAGGTTTAGGAAGG+TGG - Chr3:19910452-19910471 MsG0380012568.01.T01:CDS 45.0%
CTGTTGCTGCAAAAGCTGAT+TGG - Chr3:19911805-19911824 MsG0380012568.01.T01:intron 45.0%
CTTGCATGGTGACAAAAGAG+AGG + Chr3:19909680-19909699 None:intergenic 45.0%
CTTGCCATTGCAAAAAGGGT+TGG - Chr3:19907653-19907672 MsG0380012568.01.T01:intron 45.0%
GACAGGCTTCATAAGAAGTG+TGG + Chr3:19909912-19909931 None:intergenic 45.0%
GAGAACATGGTTCCTTCCAA+AGG - Chr3:19905757-19905776 MsG0380012568.01.T01:CDS 45.0%
GCAGCCAATGCTTCTTCAAA+AGG + Chr3:19907287-19907306 None:intergenic 45.0%
GCATGACTAAGAGGTCACAT+AGG - Chr3:19908549-19908568 MsG0380012568.01.T01:intron 45.0%
GCATTAACTATGGTCGGAGA+TGG - Chr3:19910165-19910184 MsG0380012568.01.T01:intron 45.0%
GCTATAGCACTGTAGTGTAG+CGG - Chr3:19909455-19909474 MsG0380012568.01.T01:intron 45.0%
GGGGATAGCCTGCATAATTA+AGG + Chr3:19908869-19908888 None:intergenic 45.0%
GTAAAGCCATTGACACGAAC+TGG + Chr3:19905580-19905599 None:intergenic 45.0%
GTAGCAGCAGCCATAATCAA+AGG + Chr3:19905709-19905728 None:intergenic 45.0%
GTTGCTACTGCATGACTAAG+AGG - Chr3:19908540-19908559 MsG0380012568.01.T01:intron 45.0%
TAATTATGCAGGCTATCCCC+TGG - Chr3:19908869-19908888 MsG0380012568.01.T01:intron 45.0%
TATGCCAGGACATCATGTAC+TGG + Chr3:19909248-19909267 None:intergenic 45.0%
TCAGGGTTCTATTCACGATC+TGG + Chr3:19910993-19911012 None:intergenic 45.0%
TCGGCTAAAAATGTTCACCC+TGG - Chr3:19906119-19906138 MsG0380012568.01.T01:intron 45.0%
TGAAAGACTCAAAGCCAGGA+TGG + Chr3:19911091-19911110 None:intergenic 45.0%
TGATGCAGTGTGCTTTGATG+TGG - Chr3:19907068-19907087 MsG0380012568.01.T01:intron 45.0%
TGTTCCTGCTAGAAGTTGCA+GGG - Chr3:19910328-19910347 MsG0380012568.01.T01:intron 45.0%
TGTTGAGGTCTAGATTGTCG+TGG - Chr3:19906554-19906573 MsG0380012568.01.T01:intron 45.0%
TTATGACTAGGAAGGCTGCT+GGG - Chr3:19910575-19910594 MsG0380012568.01.T01:intron 45.0%
TTGTAGATCGCGGGAAATGA+TGG + Chr3:19909493-19909512 None:intergenic 45.0%
TTTATGACTAGGAAGGCTGC+TGG - Chr3:19910574-19910593 MsG0380012568.01.T01:intron 45.0%
! ACCTGGGATAATTTGTGCAG+GGG - Chr3:19905979-19905998 MsG0380012568.01.T01:intron 45.0%
! AGTGAGGAAGCAGATGGATT+TGG - Chr3:19911908-19911927 MsG0380012568.01.T01:CDS 45.0%
! AGTTGCAGGGGTAGTTTTCT+AGG - Chr3:19910341-19910360 MsG0380012568.01.T01:intron 45.0%
! CTACCTGGGATAATTTGTGC+AGG - Chr3:19905977-19905996 MsG0380012568.01.T01:intron 45.0%
! GCAGGGATTTTACTCAACTC+AGG + Chr3:19911011-19911030 None:intergenic 45.0%
! GTGAGGAAGCAGATGGATTT+GGG - Chr3:19911909-19911928 MsG0380012568.01.T01:CDS 45.0%
! GTTTGACTTCCGATTGAGAG+AGG - Chr3:19906197-19906216 MsG0380012568.01.T01:intron 45.0%
! TATGGTACTGTGGTTTGGGT+GGG - Chr3:19906295-19906314 MsG0380012568.01.T01:intron 45.0%
! TTATGGTACTGTGGTTTGGG+TGG - Chr3:19906294-19906313 MsG0380012568.01.T01:intron 45.0%
!! AGAGGTGGATAGTGGATTAG+AGG - Chr3:19910385-19910404 MsG0380012568.01.T01:intron 45.0%
!! AGATGGCGCAACTGATTTTG+AGG - Chr3:19910182-19910201 MsG0380012568.01.T01:intron 45.0%
!! AGCTTAGTTGGTAGCTACCT+GGG - Chr3:19905963-19905982 MsG0380012568.01.T01:intron 45.0%
!! ATGGGGGTGTTTAGAGAAGT+GGG - Chr3:19906657-19906676 MsG0380012568.01.T01:intron 45.0%
!! CTTGATTTGTTCGACTGCAG+TGG + Chr3:19910053-19910072 None:intergenic 45.0%
!! GGTCACATAGGTTTGAGTTG+CGG - Chr3:19908561-19908580 MsG0380012568.01.T01:intron 45.0%
!! TAGCTTAGTTGGTAGCTACC+TGG - Chr3:19905962-19905981 MsG0380012568.01.T01:intron 45.0%
!! TTGAAGAAGCATTGGCTGCT+AGG - Chr3:19907288-19907307 MsG0380012568.01.T01:intron 45.0%
!!! ACGAGCTTGCTGAATTTTGC+GGG - Chr3:19907121-19907140 MsG0380012568.01.T01:intron 45.0%
!!! CACCCCTTTAAAGTTTTGGC+TGG + Chr3:19908502-19908521 None:intergenic 45.0%
!!! GACGAGCTTGCTGAATTTTG+CGG - Chr3:19907120-19907139 MsG0380012568.01.T01:intron 45.0%
!! AAATATATAAAAACTATAAT+TGG - Chr3:19908287-19908306 MsG0380012568.01.T01:intron 5.0%
!!! TTTATATTTTTTAATTTCTT+TGG - Chr3:19907199-19907218 MsG0380012568.01.T01:intron 5.0%
AAGCCTGTCGCGTCAATACT+CGG - Chr3:19909923-19909942 MsG0380012568.01.T01:intron 50.0%
AAGTGCAGAGAGGTGGATAG+TGG - Chr3:19910377-19910396 MsG0380012568.01.T01:intron 50.0%
ACCGCAATGCTACGCAATTG+AGG + Chr3:19906511-19906530 None:intergenic 50.0%
ATATTGCGGGATCAACCGTG+TGG + Chr3:19910504-19910523 None:intergenic 50.0%
ATGGACTTTGGGCCATGACT+CGG + Chr3:19910678-19910697 None:intergenic 50.0%
ATTTAGGCTCGTAGACCAGG+TGG - Chr3:19911738-19911757 MsG0380012568.01.T01:intron 50.0%
CACATTTAGGCTCGTAGACC+AGG - Chr3:19911735-19911754 MsG0380012568.01.T01:intron 50.0%
CAGGCATGGAAAACTCGGTT+TGG + Chr3:19907921-19907940 None:intergenic 50.0%
CTATAGGTTCCTTCCACTGG+AGG + Chr3:19906260-19906279 None:intergenic 50.0%
CTGGTCAGGTGGTTCAGTTT+CGG - Chr3:19910628-19910647 MsG0380012568.01.T01:intron 50.0%
GCCCACCTTCCTAAACCTAA+TGG + Chr3:19910457-19910476 None:intergenic 50.0%
GCCTCAATTGCGTAGCATTG+CGG - Chr3:19906507-19906526 MsG0380012568.01.T01:intron 50.0%
GCGAGGTCTGAATTCAAACC+AGG + Chr3:19906140-19906159 None:intergenic 50.0%
GCGATCCACGATTGTCAACA+CGG - Chr3:19908413-19908432 MsG0380012568.01.T01:intron 50.0%
GCTCGTCAATTCCTTCATCC+AGG + Chr3:19907107-19907126 None:intergenic 50.0%
GTAGGTGCTTCAGTAAGCCT+TGG + Chr3:19910285-19910304 None:intergenic 50.0%
GTGTATGAAGAGCCGAGTCA+TGG - Chr3:19910663-19910682 MsG0380012568.01.T01:intron 50.0%
GTGTTCCTGCTAGAAGTTGC+AGG - Chr3:19910327-19910346 MsG0380012568.01.T01:intron 50.0%
GTTCCTGCTAGAAGTTGCAG+GGG - Chr3:19910329-19910348 MsG0380012568.01.T01:intron 50.0%
TATTGCGGGATCAACCGTGT+GGG + Chr3:19910503-19910522 None:intergenic 50.0%
TGATGTCTGCTGTCATGTCG+CGG - Chr3:19906441-19906460 MsG0380012568.01.T01:intron 50.0%
TGCAAGAGCAATGCCAAAGG+GGG + Chr3:19907536-19907555 None:intergenic 50.0%
TGCTCAGGTATTAGCCCACA+CGG - Chr3:19910486-19910505 MsG0380012568.01.T01:CDS 50.0%
TGTACGAGTCATCGCTGTCT+CGG + Chr3:19910547-19910566 None:intergenic 50.0%
TGTGTGTGACTCTAGCCACT+AGG - Chr3:19906043-19906062 MsG0380012568.01.T01:intron 50.0%
TGTTGACAATCGTGGATCGC+AGG + Chr3:19908413-19908432 None:intergenic 50.0%
! ATGGTACTGTGGTTTGGGTG+GGG - Chr3:19906296-19906315 MsG0380012568.01.T01:intron 50.0%
! TAGGCCTGGTTAGCTCCATT+AGG - Chr3:19910439-19910458 MsG0380012568.01.T01:CDS 50.0%
! TCTCTCCGTGTTGACAATCG+TGG + Chr3:19908421-19908440 None:intergenic 50.0%
!! CATGGGGGTGTTTAGAGAAG+TGG - Chr3:19906656-19906675 MsG0380012568.01.T01:intron 50.0%
!! CTGTTGCAGAATGGACTGCA+AGG - Chr3:19907154-19907173 MsG0380012568.01.T01:intron 50.0%
!! GGAAGCTCTGGACAGTTTCT+GGG - Chr3:19909986-19910005 MsG0380012568.01.T01:intron 50.0%
!! TGGAAGCTCTGGACAGTTTC+TGG - Chr3:19909985-19910004 MsG0380012568.01.T01:intron 50.0%
!!! CGAGCTTGCTGAATTTTGCG+GGG - Chr3:19907122-19907141 MsG0380012568.01.T01:intron 50.0%
ACCTCTCTGCACTTGAGAGC+GGG + Chr3:19910371-19910390 None:intergenic 55.0%
AGCAATGCCAAAGGGGGAGT+AGG + Chr3:19907530-19907549 None:intergenic 55.0%
AGCACGTTATGCTCGGATGC+TGG - Chr3:19910609-19910628 MsG0380012568.01.T01:intron 55.0%
AGCACTGTGTGCCTGGATGA+AGG - Chr3:19907093-19907112 MsG0380012568.01.T01:intron 55.0%
AGCCTGTCGCGTCAATACTC+GGG - Chr3:19909924-19909943 MsG0380012568.01.T01:intron 55.0%
ATGAACATGTCGGCACCACC+TGG + Chr3:19911756-19911775 None:intergenic 55.0%
CACCTCTCTGCACTTGAGAG+CGG + Chr3:19910372-19910391 None:intergenic 55.0%
CTACCCCTGCAACTTCTAGC+AGG + Chr3:19910335-19910354 None:intergenic 55.0%
GAGCATACTTCAAGGAGCGG+AGG - Chr3:19910022-19910041 MsG0380012568.01.T01:intron 55.0%
GCCCCTGCACAAATTATCCC+AGG + Chr3:19905983-19906002 None:intergenic 55.0%
GGTAGCGAGCACGTTATGCT+CGG - Chr3:19910602-19910621 MsG0380012568.01.T01:intron 55.0%
GTGTGGAGAAGTGGGGAATC+CGG + Chr3:19906019-19906038 None:intergenic 55.0%
GTTATGCTCGGATGCTGGTC+AGG - Chr3:19910614-19910633 MsG0380012568.01.T01:intron 55.0%
TGTGGAGAAGTGGGGAATCC+GGG + Chr3:19906018-19906037 None:intergenic 55.0%
TGTGGATAGCACTGTGTGCC+TGG - Chr3:19907086-19907105 MsG0380012568.01.T01:intron 55.0%
! CTTGCTGAATTTTGCGGGGC+AGG - Chr3:19907126-19907145 MsG0380012568.01.T01:intron 55.0%
! GATAATTTGTGCAGGGGCCG+GGG - Chr3:19905985-19906004 MsG0380012568.01.T01:intron 55.0%
! GGATAATTTGTGCAGGGGCC+GGG - Chr3:19905984-19906003 MsG0380012568.01.T01:intron 55.0%
! GGGATAATTTGTGCAGGGGC+CGG - Chr3:19905983-19906002 MsG0380012568.01.T01:intron 55.0%
! TGGTACTGTGGTTTGGGTGG+GGG - Chr3:19906297-19906316 MsG0380012568.01.T01:intron 55.0%
! TGGTTTGGGTGGGGGAGTTA+AGG - Chr3:19906305-19906324 MsG0380012568.01.T01:intron 55.0%
!! ATCCCGAGTATTGACGCGAC+AGG + Chr3:19909929-19909948 None:intergenic 55.0%
ACCCGCTCTCAAGTGCAGAG+AGG - Chr3:19910367-19910386 MsG0380012568.01.T01:intron 60.0%
ATGCTCGGATGCTGGTCAGG+TGG - Chr3:19910617-19910636 MsG0380012568.01.T01:intron 60.0%
CGCTCTCAAGTGCAGAGAGG+TGG - Chr3:19910370-19910389 MsG0380012568.01.T01:intron 60.0%
CTAGGAAGGCTGCTGGGACT+TGG - Chr3:19910581-19910600 MsG0380012568.01.T01:intron 60.0%
GGCAGTTCCTACTCCCCCTT+TGG - Chr3:19907520-19907539 MsG0380012568.01.T01:CDS 60.0%
GTGGAGAAGTGGGGAATCCG+GGG + Chr3:19906017-19906036 None:intergenic 60.0%
GTGGGCCGTATCTCATGCTC+AGG - Chr3:19910471-19910490 MsG0380012568.01.T01:CDS 60.0%
TGGGTGGGGGAGTTAAGGAG+TGG - Chr3:19906310-19906329 MsG0380012568.01.T01:intron 60.0%
GGAATCCGGGGTTCGAACCC+CGG + Chr3:19906005-19906024 None:intergenic 65.0%
AGGGGCCGGGGTTCGAACCC+CGG - Chr3:19905997-19906016 MsG0380012568.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 19905417 19912167 19905417 ID=MsG0380012568.01;Name=MsG0380012568.01
Chr3 mRNA 19905417 19912167 19905417 ID=MsG0380012568.01.T01;Parent=MsG0380012568.01;Name=MsG0380012568.01.T01;_AED=0.41;_eAED=0.42;_QI=130|0.66|0.71|1|1|1|7|298|296
Chr3 exon 19911806 19912167 19911806 ID=MsG0380012568.01.T01:exon:3752;Parent=MsG0380012568.01.T01
Chr3 exon 19910409 19910541 19910409 ID=MsG0380012568.01.T01:exon:3753;Parent=MsG0380012568.01.T01
Chr3 exon 19910212 19910319 19910212 ID=MsG0380012568.01.T01:exon:3754;Parent=MsG0380012568.01.T01
Chr3 exon 19908611 19908704 19908611 ID=MsG0380012568.01.T01:exon:3755;Parent=MsG0380012568.01.T01
Chr3 exon 19907509 19907625 19907509 ID=MsG0380012568.01.T01:exon:3756;Parent=MsG0380012568.01.T01
Chr3 exon 19907354 19907434 19907354 ID=MsG0380012568.01.T01:exon:3757;Parent=MsG0380012568.01.T01
Chr3 exon 19905417 19905840 19905417 ID=MsG0380012568.01.T01:exon:3758;Parent=MsG0380012568.01.T01
Chr3 five_prime_UTR 19912038 19912167 19912038 ID=MsG0380012568.01.T01:five_prime_utr;Parent=MsG0380012568.01.T01
Chr3 CDS 19911806 19912037 19911806 ID=MsG0380012568.01.T01:cds;Parent=MsG0380012568.01.T01
Chr3 CDS 19910409 19910541 19910409 ID=MsG0380012568.01.T01:cds;Parent=MsG0380012568.01.T01
Chr3 CDS 19910212 19910319 19910212 ID=MsG0380012568.01.T01:cds;Parent=MsG0380012568.01.T01
Chr3 CDS 19908611 19908704 19908611 ID=MsG0380012568.01.T01:cds;Parent=MsG0380012568.01.T01
Chr3 CDS 19907509 19907625 19907509 ID=MsG0380012568.01.T01:cds;Parent=MsG0380012568.01.T01
Chr3 CDS 19907354 19907434 19907354 ID=MsG0380012568.01.T01:cds;Parent=MsG0380012568.01.T01
Chr3 CDS 19905715 19905840 19905715 ID=MsG0380012568.01.T01:cds;Parent=MsG0380012568.01.T01
Chr3 three_prime_UTR 19905417 19905714 19905417 ID=MsG0380012568.01.T01:three_prime_utr;Parent=MsG0380012568.01.T01
Gene Sequence

>MsG0380012568.01.T01

ATGGAAGCTTTGATCAGTTATGGGATCAACCCAGTTCGTGTCAATGGCTTTACAAAGCAGCGATCTTGTTTTCCGTTTGAATCAGAACCAAATCTCAAAAAGGGTACGTTTGGATTTCAAATTGGAGTGGTGAATAAGAACAAGAAGAAGAAGTTTTCTCCTTTGATTATGGCTGCTGCTACTGTTGGAAATTCACAAGTTGGTCATTTTGAGAACATGGTTCCTTCCAAAGAAATTCTGGAGCTATGGAAGAATGGTGATGCAGTGTGCTTTGATGTGGATAGCACTGTGTGCCTGGATGAAGGAATTGACGAGCTTGCTGAATTTTGCGGGGCAGGAAAAGCTGTTGCAGAATGGACTGCAAGAGCAATGGGTGGTTCTGTTCCTTTTGAAGAAGCATTGGCTGCTAGGTTATCTTTGTTCAATCCCTCCATGTCTCAACTTGAGAATTTTCTTCAGCAAAGGCCGCCAAAGCTATCCCCTGGCATTGAAGAGTTAATCCAGAAACTAAAGGCTAATGGCAAGCATGTATATCTGATCTCAGGGGGCTTTCGTCAAATGATCAATAACATTTTTGCCAATCAACTACTTTTTGGAAGCTCTGGACAGTTTCTGGGATTTGACGAAAATGAGCATACTTCAAGGAGCGGAGGAAAAGCCACTGCAGTCGAACAAATCAAGAAGGATCATGGGTACAAAGCATTAACTATGGTCGGAGATGGCGCAACTGATTTTGAGGTAAGAAAATATCTCGGATATCTTGAGGCTCGTAGACCAGGTGGTGCCGACATGTTCATTTGCTATGCTGGTGTTCAACTTCGAGAAGCTGTTGCTGCAAAAGCTGATTGGCTAGTTTTCAATTTTCAAGACCTTATAAATTCATTGGGGTAA
Protein sequence

>MsG0380012568.01.T01

MEALISYGINPVRVNGFTKQRSCFPFESEPNLKKGTFGFQIGVVNKNKKKKFSPLIMAAATVGNSQVGHFENMVPSKEILELWKNGDAVCFDVDSTVCLDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFNPSMSQLENFLQQRPPKLSPGIEELIQKLKANGKHVYLISGGFRQMINNIFANQLLFGSSGQFLGFDENEHTSRSGGKATAVEQIKKDHGYKALTMVGDGATDFEVRKYLGYLEARRPGGADMFICYAGVQLREAVAAKADWLVFNFQDLINSLG*