AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042090.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042090.01.T01 MTR_8g011460 93.844 666 8 1 1 633 1 666 0.0 1274
MsG0880042090.01.T01 MTR_7g052820 81.559 667 81 6 1 630 1 662 0.0 1075
MsG0880042090.01.T01 MTR_5g098130 63.855 664 202 3 1 631 1 659 0.0 847
MsG0880042090.01.T01 MTR_5g094160 60.000 680 218 4 1 627 1 679 0.0 815
MsG0880042090.01.T01 MTR_5g098130 69.325 489 149 1 1 489 1 488 0.0 700
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042090.01.T01 AT5G48460 73.414 662 134 3 1 628 1 654 0.0 986
MsG0880042090.01.T01 AT5G35700 62.085 662 213 5 1 626 1 660 0.0 825
MsG0880042090.01.T01 AT4G26700 63.301 624 195 2 1 591 1 623 0.0 807
MsG0880042090.01.T01 AT4G26700 63.301 624 195 2 1 591 1 623 0.0 807
MsG0880042090.01.T01 AT4G26700 63.301 624 195 2 1 591 1 623 0.0 807
MsG0880042090.01.T01 AT4G26700 66.550 571 190 1 1 571 1 570 0.0 793
MsG0880042090.01.T01 AT4G26700 66.550 571 190 1 1 571 1 570 0.0 793
MsG0880042090.01.T01 AT4G26700 66.550 571 190 1 1 571 1 570 0.0 793
MsG0880042090.01.T01 AT5G55400 61.502 626 204 4 1 591 1 624 0.0 788
MsG0880042090.01.T01 AT5G55400 61.502 626 204 4 1 591 1 624 0.0 788
MsG0880042090.01.T01 AT5G55400 61.502 626 204 4 1 591 1 624 0.0 788
MsG0880042090.01.T01 AT2G04750 60.000 660 219 6 1 624 1 651 0.0 788
MsG0880042090.01.T01 AT4G26700 67.834 457 113 2 168 591 19 474 0.0 632

Find 127 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAACTGATGCCGATATTT+TGG 0.145068 8:-3551358 MsG0880042090.01.T01:CDS
TGCAACCAAGTTGTTAAAAT+AGG 0.188350 8:-3551632 MsG0880042090.01.T01:CDS
GATTCATCTATTGATGAAAA+TGG 0.211012 8:-3549681 MsG0880042090.01.T01:CDS
TGCAGCCTAGAGCTGTAAAT+TGG 0.224456 8:-3550760 MsG0880042090.01.T01:CDS
GAATTCCTCAGCATTCTTAA+AGG 0.241723 8:-3554123 MsG0880042090.01.T01:CDS
CTTAACTCTGCTAAAGCTAT+TGG 0.257781 8:-3553746 MsG0880042090.01.T01:CDS
ATTGTTTATTATCCTAAGTT+TGG 0.260035 8:-3549507 MsG0880042090.01.T01:three_prime_UTR
CAAAAGACGGCGTTCTTCTT+TGG 0.262609 8:-3553956 MsG0880042090.01.T01:intron
AAGAATGCTGAGGAATTCTT+TGG 0.279033 8:+3554128 None:intergenic
GAGAGAAGTTGGCAACATTA+TGG 0.282586 8:+3555310 None:intergenic
GCTTATCAATGTGGCAGTTC+CGG 0.291492 8:-3553846 MsG0880042090.01.T01:CDS
TTCTCATTGGTAAATGTTGC+TGG 0.329595 8:-3551596 MsG0880042090.01.T01:CDS
GCAACCAAGTTGTTAAAATA+GGG 0.329708 8:-3551631 MsG0880042090.01.T01:CDS
AAGTTGAAACTGATTATTAT+AGG 0.330948 8:+3549451 None:intergenic
CTTATCAATGTGGCAGTTCC+GGG 0.333421 8:-3553845 MsG0880042090.01.T01:CDS
ATCTTCCAGTTCACAATTCC+TGG 0.337317 8:+3551701 None:intergenic
AACTTTCAATCTTGACATCT+TGG 0.341820 8:+3554853 None:intergenic
AAGAAAGAGCATTTCGCCTT+TGG 0.345628 8:-3552355 MsG0880042090.01.T01:CDS
GGTGATATCACAGATTATTA+AGG 0.348768 8:-3553576 MsG0880042090.01.T01:intron
TCTTTGCAGATGGATTCTTT+TGG 0.353385 8:-3551744 MsG0880042090.01.T01:intron
CCACTATGTCTCTTGCAGTT+AGG 0.361119 8:+3552928 None:intergenic
GGAGAGAGCTTCTTATGTTC+AGG 0.364544 8:-3554807 MsG0880042090.01.T01:CDS
TTTCAGCGTCATCTGGTGCT+TGG 0.368288 8:-3553599 MsG0880042090.01.T01:intron
ACAAAAGCAAGATTAAGATT+TGG 0.372379 8:+3552897 None:intergenic
TTCAGCGTCATCTGGTGCTT+GGG 0.375496 8:-3553598 MsG0880042090.01.T01:intron
TGAATTGCTTGATGATAGTA+AGG 0.391871 8:-3553374 MsG0880042090.01.T01:intron
GTGGAAGGATTAGTGTATTC+TGG 0.398642 8:+3553026 None:intergenic
CGCCTTTGGATTAATAGCCT+TGG 0.402983 8:-3552341 MsG0880042090.01.T01:CDS
AAAACTTAGGTTCCAAACTT+AGG 0.404056 8:+3549495 None:intergenic
TGTACTCTGATTTCTTCAAA+TGG 0.410707 8:+3553212 None:intergenic
ATTCTTGTTTCAGCGTCATC+TGG 0.412164 8:-3553606 MsG0880042090.01.T01:intron
GAAGTGAAGGAGAGAGAAGT+TGG 0.417956 8:+3555299 None:intergenic
AATAGCAAAGTTAGCAGTAC+AGG 0.418589 8:-3551327 MsG0880042090.01.T01:CDS
TCTTTCTTCTCTAGAGTCTT+CGG 0.422553 8:+3552370 None:intergenic
AGAGAAGTTGGCAACATTAT+GGG 0.424202 8:+3555311 None:intergenic
TGAGTATGAGGAGGGAAAGT+GGG 0.424623 8:-3554901 MsG0880042090.01.T01:CDS
CTCATTGGTTGAAGGATCAA+TGG 0.425456 8:+3553992 None:intergenic
TGCAATTTCGAAGAGCTCAT+TGG 0.426990 8:+3553977 None:intergenic
GCAGCCTAGAGCTGTAAATT+GGG 0.429402 8:-3550759 MsG0880042090.01.T01:CDS
GAAACAGCTTAAATTCTCAT+TGG 0.434900 8:-3551609 MsG0880042090.01.T01:CDS
ATTAGCCCATTCCAAAATAT+CGG 0.435292 8:+3551347 None:intergenic
GTCTTTGAGGATCTTAGAAA+CGG 0.441674 8:-3552296 MsG0880042090.01.T01:CDS
CACCTTAACAATATCTTCTC+TGG 0.446667 8:+3553244 None:intergenic
CCTCATTATAGTTGATCAAA+AGG 0.447137 8:-3549598 MsG0880042090.01.T01:three_prime_UTR
ATATGTCAACAATGTCTTTG+AGG 0.451615 8:-3552309 MsG0880042090.01.T01:CDS
ATGAGTATGAGGAGGGAAAG+TGG 0.451963 8:-3554902 MsG0880042090.01.T01:CDS
CTAGAGTCTTCGGTGTCGTC+AGG 0.452070 8:+3552380 None:intergenic
AAGATTATTCTGACCTGTGC+TGG 0.454320 8:+3552862 None:intergenic
CATTAGATATGTCTGGTCAC+TGG 0.459352 8:-3555133 MsG0880042090.01.T01:exon
CCCACTGTCCTTTCTTCATG+AGG 0.462266 8:+3549777 None:intergenic
GCTATTAAGTGTGGTGAGAA+GGG 0.468638 8:+3555277 None:intergenic
TTAAATGGCATCTTAATTGG+AGG 0.469515 8:+3551668 None:intergenic
ATTAGATATGTCTGGTCACT+GGG 0.470844 8:-3555132 MsG0880042090.01.T01:exon
TCTTGAACATTCTGACAAGA+TGG 0.470848 8:-3552964 MsG0880042090.01.T01:CDS
TAGTGAGAGTGGGAGTCAAT+TGG 0.471021 8:-3549742 MsG0880042090.01.T01:CDS
AGCTATTAAGTGTGGTGAGA+AGG 0.478453 8:+3555276 None:intergenic
CGAAAAGATTACTCAATCCA+TGG 0.483964 8:-3553796 MsG0880042090.01.T01:CDS
CCACTGTCCTTTCTTCATGA+GGG 0.487879 8:+3549778 None:intergenic
ATGTCAAGATTGAAAGTTGT+GGG 0.487972 8:-3554848 MsG0880042090.01.T01:CDS
CATAAGACATTAGATATGTC+TGG 0.490921 8:-3555140 MsG0880042090.01.T01:exon
TTGTGTAGTTTATGAGTATG+AGG 0.492802 8:-3554913 MsG0880042090.01.T01:intron
CAGGACAAAAGTTTATCTGA+TGG 0.500132 8:-3550812 MsG0880042090.01.T01:CDS
TGTGGTGAGAAGGGAAGTGA+AGG 0.502757 8:+3555286 None:intergenic
TGATGCTAGCTGTTAGAGTA+AGG 0.506551 8:+3549820 None:intergenic
AATTGGGGACTTGTAACAAA+AGG 0.507836 8:-3550743 MsG0880042090.01.T01:CDS
CAAGGCACATTACAAAACTT+AGG 0.507961 8:+3549482 None:intergenic
TCTTTGAGGATCTTAGAAAC+GGG 0.508869 8:-3552295 MsG0880042090.01.T01:intron
TGTCACCAGGAATTGTGAAC+TGG 0.509935 8:-3551706 MsG0880042090.01.T01:CDS
TGACATATGTTGAATTTCCA+AGG 0.513299 8:+3552324 None:intergenic
AAAGGTCAATGTATGATACT+AGG 0.513380 8:-3549580 MsG0880042090.01.T01:three_prime_UTR
CGCCAGAGAAGATATTGTTA+AGG 0.514946 8:-3553246 MsG0880042090.01.T01:CDS
GGCACACAAGACTTCATTGA+AGG 0.515640 8:-3553704 MsG0880042090.01.T01:CDS
CTGGTGCAAGAACATTTAGA+AGG 0.520054 8:+3553045 None:intergenic
TCGAAGAGCTCATTGGTTGA+AGG 0.520913 8:+3553984 None:intergenic
TGTCGTCAGGAATTGCTTGA+AGG 0.523272 8:+3552393 None:intergenic
ACATTTGCAAATTCTAGAGC+AGG 0.524518 8:-3554158 MsG0880042090.01.T01:CDS
AACTTGCGATTTCACGCTCG+TGG 0.531515 8:-3551387 MsG0880042090.01.T01:CDS
TAAAACACCCTCATGAAGAA+AGG 0.536903 8:-3549785 MsG0880042090.01.T01:CDS
TTCCAAGGCTATTAATCCAA+AGG 0.539233 8:+3552339 None:intergenic
TCATTGGTTGAAGGATCAAT+GGG 0.541850 8:+3553993 None:intergenic
CTTGAACATTCTGACAAGAT+GGG 0.542230 8:-3552963 MsG0880042090.01.T01:CDS
TGCTGGAAATGACATTGTGC+AGG 0.543050 8:-3551579 MsG0880042090.01.T01:CDS
GGAACTTCAGATAGTGAGAG+TGG 0.543630 8:-3549753 MsG0880042090.01.T01:CDS
ACTCTTGAGAAGGTGTCACC+AGG 0.555167 8:-3551719 MsG0880042090.01.T01:CDS
TTGAAACTGATTATTATAGG+AGG 0.557281 8:+3549454 None:intergenic
GCGATTTCACGCTCGTGGGA+AGG 0.562205 8:-3551382 MsG0880042090.01.T01:CDS
TAACAGCTAGCATCATGTCT+TGG 0.567300 8:-3549812 MsG0880042090.01.T01:CDS
CACAAGACTTCATTGAAGGA+AGG 0.568450 8:-3553700 MsG0880042090.01.T01:CDS
GATTACTCAATCCATGGGAA+AGG 0.571585 8:-3553790 MsG0880042090.01.T01:CDS
AGTCCCCAATTTACAGCTCT+AGG 0.572192 8:+3550755 None:intergenic
GATGTCAAGATTGAAAGTTG+TGG 0.573074 8:-3554849 MsG0880042090.01.T01:CDS
TAACTTCTCCTCTGATGTCA+AGG 0.574560 8:-3553176 MsG0880042090.01.T01:intron
TGTAGTTTATGAGTATGAGG+AGG 0.580173 8:-3554910 MsG0880042090.01.T01:intron
CCTAACTGCAAGAGACATAG+TGG 0.583118 8:-3552928 MsG0880042090.01.T01:CDS
ATCAAACTTTAGCTTATCTG+TGG 0.587806 8:-3551446 MsG0880042090.01.T01:intron
GAAAAGATTACTCAATCCAT+GGG 0.588049 8:-3553795 MsG0880042090.01.T01:CDS
GGGAGAAAATCTGAGTGAGA+AGG 0.588682 8:-3554828 MsG0880042090.01.T01:CDS
CTCTTCGAAATTGCAAAAGA+CGG 0.590029 8:-3553969 MsG0880042090.01.T01:CDS
GTAGTTTATGAGTATGAGGA+GGG 0.590304 8:-3554909 MsG0880042090.01.T01:intron
ACTTGCGATTTCACGCTCGT+GGG 0.599082 8:-3551386 MsG0880042090.01.T01:CDS
ATTAGTTACCTTGACATCAG+AGG 0.608195 8:+3553168 None:intergenic
GTATCAGAATACTGATGAGG+AGG 0.612432 8:-3554780 MsG0880042090.01.T01:CDS
ACAAGACTTCATTGAAGGAA+GGG 0.614619 8:-3553699 MsG0880042090.01.T01:intron
GCACAGAACTAAGAAGCTCA+AGG 0.617258 8:+3550780 None:intergenic
CAGAGAAGATATTGTTAAGG+TGG 0.618213 8:-3553243 MsG0880042090.01.T01:CDS
GAACTTCAGATAGTGAGAGT+GGG 0.620450 8:-3549752 MsG0880042090.01.T01:CDS
GCACGCTCGTCAATAGTCCC+CGG 0.623143 8:+3553827 None:intergenic
TCAGCGTCATCTGGTGCTTG+GGG 0.626477 8:-3553597 MsG0880042090.01.T01:intron
CAGCCTAGAGCTGTAAATTG+GGG 0.627141 8:-3550758 MsG0880042090.01.T01:CDS
GTGAACTGATTCTGAAGACA+TGG 0.629933 8:+3555092 None:intergenic
CAATGGGAAGATACTTCTTG+AGG 0.633142 8:+3554009 None:intergenic
TCAAGCAATTCAAGAAGCTG+AGG 0.634759 8:+3553385 None:intergenic
TTTGTATCAGAATACTGATG+AGG 0.640582 8:-3554783 MsG0880042090.01.T01:CDS
ACTGCAAGAGACATAGTGGA+AGG 0.641043 8:-3552924 MsG0880042090.01.T01:CDS
CCTCATGAAGAAAGGACAGT+GGG 0.641156 8:-3549777 MsG0880042090.01.T01:CDS
TTATTATAGGAGGAAATCCA+AGG 0.645669 8:+3549464 None:intergenic
AGCTGCCTTTAAGAATGCTG+AGG 0.647530 8:+3554118 None:intergenic
GGATGTACAGTAGTCAACAT+TGG 0.648422 8:-3553725 MsG0880042090.01.T01:CDS
TTATCAATGTGGCAGTTCCG+GGG 0.652098 8:-3553844 MsG0880042090.01.T01:CDS
CATGAAGAAAGGACAGTGGG+AGG 0.669124 8:-3549774 MsG0880042090.01.T01:CDS
TCTGACACTACAGGATGCTG+AGG 0.672458 8:-3553078 MsG0880042090.01.T01:intron
GCTGGAAATGACATTGTGCA+GGG 0.692017 8:-3551578 MsG0880042090.01.T01:CDS
ATACACTAATCCTTCCACAC+TGG 0.693042 8:-3553021 MsG0880042090.01.T01:CDS
TTGCAGCAAGCTTATCAATG+TGG 0.706692 8:-3553855 MsG0880042090.01.T01:intron
CCCTCATGAAGAAAGGACAG+TGG 0.709192 8:-3549778 MsG0880042090.01.T01:CDS
ACTTATTGTGTGAAGCAATG+TGG 0.720357 8:+3554091 None:intergenic
TTAGATATGTCTGGTCACTG+GGG 0.751661 8:-3555131 MsG0880042090.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATTTATTTATTT+CGG - Chr8:3551086-3551105 MsG0880042090.01.T01:intron 0.0%
!! AGATAGTATTAATAAAAAAA+TGG + Chr8:3555123-3555142 None:intergenic 10.0%
!! AAAATTCAAGATTTATTTGT+AGG + Chr8:3551270-3551289 None:intergenic 15.0%
!! AATAATATTTCCATGAATAA+TGG + Chr8:3550859-3550878 None:intergenic 15.0%
!! TTTAATTATTGCATGTTTAT+TGG - Chr8:3554079-3554098 MsG0880042090.01.T01:CDS 15.0%
!!! TTACGAAAAATTAAACTTTT+AGG - Chr8:3554476-3554495 MsG0880042090.01.T01:intron 15.0%
!! AAAATGAACATTATAAAGAG+AGG - Chr8:3550500-3550519 MsG0880042090.01.T01:intron 20.0%
!! AAATCATTATCCAAATTACT+CGG - Chr8:3553234-3553253 MsG0880042090.01.T01:CDS 20.0%
!! AAGTTGAAACTGATTATTAT+AGG + Chr8:3555304-3555323 None:intergenic 20.0%
!! AGAACACATAAAAATTTATG+TGG - Chr8:3553607-3553626 MsG0880042090.01.T01:intron 20.0%
!! ATAAAAAGTTAATACTAGGT+AGG - Chr8:3553199-3553218 MsG0880042090.01.T01:CDS 20.0%
!! ATACTATAATATTACTCAAG+AGG + Chr8:3551916-3551935 None:intergenic 20.0%
!! ATTGTTTATTATCCTAAGTT+TGG - Chr8:3555245-3555264 MsG0880042090.01.T01:five_prime_UTR 20.0%
!! CATTCAATCTATTTAAATAG+GGG - Chr8:3550178-3550197 MsG0880042090.01.T01:intron 20.0%
!! CCATTCAATCTATTTAAATA+GGG - Chr8:3550177-3550196 MsG0880042090.01.T01:intron 20.0%
!! GGAAATAAAAAGTTAATACT+AGG - Chr8:3553195-3553214 MsG0880042090.01.T01:CDS 20.0%
!! TCCATTCAATCTATTTAAAT+AGG - Chr8:3550176-3550195 MsG0880042090.01.T01:intron 20.0%
!! TCTTGTATTTCTTCAAAATA+AGG + Chr8:3550479-3550498 None:intergenic 20.0%
!! TTTAGGAAAAATACATTATG+CGG - Chr8:3551948-3551967 MsG0880042090.01.T01:intron 20.0%
!! TTTCTTTGTTGAAATTATTC+TGG - Chr8:3552667-3552686 MsG0880042090.01.T01:intron 20.0%
!! TTTGTCAATACAAATGTTAT+AGG + Chr8:3554258-3554277 None:intergenic 20.0%
!!! AAGTATAAGCTATTTGATTT+AGG - Chr8:3550289-3550308 MsG0880042090.01.T01:intron 20.0%
!!! CAATTCTCAACTTTTTTAAA+TGG + Chr8:3553102-3553121 None:intergenic 20.0%
!!! TAATTTTTCGTAAAAGAAGT+TGG + Chr8:3554469-3554488 None:intergenic 20.0%
!!! TTCAATGTTGTTTATTTCTT+CGG - Chr8:3554437-3554456 MsG0880042090.01.T01:intron 20.0%
!!! TTCATATATTTTAAACCAAC+AGG - Chr8:3551459-3551478 MsG0880042090.01.T01:intron 20.0%
!!! TTGATGTTGTTATTGAAATT+TGG - Chr8:3549792-3549811 MsG0880042090.01.T01:CDS 20.0%
!!! TTGTTATAATCTCAATTTTC+AGG - Chr8:3553921-3553940 MsG0880042090.01.T01:intron 20.0%
!!! TTTTGTTAAAAGATCTTGTA+TGG - Chr8:3552535-3552554 MsG0880042090.01.T01:intron 20.0%
!!! TTTTTAAATGGCATCTTAAT+TGG + Chr8:3553090-3553109 None:intergenic 20.0%
! AACAGTATTATTGTATCTGA+AGG + Chr8:3553718-3553737 None:intergenic 25.0%
! AATAAAACAGTAAGAGAATC+AGG + Chr8:3550139-3550158 None:intergenic 25.0%
! ACAAAAAAAGTCGAAGAATA+AGG + Chr8:3552521-3552540 None:intergenic 25.0%
! ACAAAAGCAAGATTAAGATT+TGG + Chr8:3551858-3551877 None:intergenic 25.0%
! ACAATCTATAAGATGAAGAA+AGG + Chr8:3552213-3552232 None:intergenic 25.0%
! ACCTGTTACTAAAAAACTTA+AGG + Chr8:3552007-3552026 None:intergenic 25.0%
! ACTACTATTTCCATTATTCA+TGG - Chr8:3550846-3550865 MsG0880042090.01.T01:intron 25.0%
! AGATGAATAATCATAGAGTT+TGG - Chr8:3554581-3554600 MsG0880042090.01.T01:intron 25.0%
! ATAAAAAAATGGTTCACTTG+TGG + Chr8:3555112-3555131 None:intergenic 25.0%
! ATACTGAAAAAATCTACTGA+TGG - Chr8:3551298-3551317 MsG0880042090.01.T01:intron 25.0%
! ATTATTCTGGCATTTATAGT+AGG - Chr8:3552680-3552699 MsG0880042090.01.T01:intron 25.0%
! CAGAAACCAAAAAGAAAATT+TGG + Chr8:3552256-3552275 None:intergenic 25.0%
! CCCTATTTAAATAGATTGAA+TGG + Chr8:3550180-3550199 None:intergenic 25.0%
! CCTGTTACTAAAAAACTTAA+GGG + Chr8:3552006-3552025 None:intergenic 25.0%
! CTTTCAAGAAAAAACAACAT+GGG + Chr8:3549763-3549782 None:intergenic 25.0%
! GATTCATCTATTGATGAAAA+TGG - Chr8:3555071-3555090 MsG0880042090.01.T01:CDS 25.0%
! GCATAATCTAACTAAATCAT+TGG - Chr8:3553275-3553294 MsG0880042090.01.T01:intron 25.0%
! TCTTAGATTAAAACCGAATT+TGG + Chr8:3554545-3554564 None:intergenic 25.0%
! TCTTCAAAATAAGGAAAACT+CGG + Chr8:3550470-3550489 None:intergenic 25.0%
! TCTTTCAAGAAAAAACAACA+TGG + Chr8:3549764-3549783 None:intergenic 25.0%
! TGTTAATTCAAAATCCACTA+TGG - Chr8:3550100-3550119 MsG0880042090.01.T01:intron 25.0%
! TTATTCTGGCATTTATAGTA+GGG - Chr8:3552681-3552700 MsG0880042090.01.T01:intron 25.0%
! TTGAAACTGATTATTATAGG+AGG + Chr8:3555301-3555320 None:intergenic 25.0%
! TTTGAAAAAGCTATTAAGTG+TGG + Chr8:3549487-3549506 None:intergenic 25.0%
!! AACTAATTTTGCTCTTTCAA+AGG + Chr8:3551769-3551788 None:intergenic 25.0%
!! ACTAATTTTGCTCTTTCAAA+GGG + Chr8:3551768-3551787 None:intergenic 25.0%
!! AGAGATCCAAATTTTCTTTT+TGG - Chr8:3552247-3552266 MsG0880042090.01.T01:intron 25.0%
!! CTTTTGATCAACTATAATGA+GGG + Chr8:3555156-3555175 None:intergenic 25.0%
!! GTAAACAGTCATTGATTAAA+CGG - Chr8:3551198-3551217 MsG0880042090.01.T01:intron 25.0%
!! GTTATTGAAATTTGGAATCT+GGG - Chr8:3549800-3549819 MsG0880042090.01.T01:CDS 25.0%
!! TGTTATTGAAATTTGGAATC+TGG - Chr8:3549799-3549818 MsG0880042090.01.T01:CDS 25.0%
!! TTTTGAATAGATACAACTAC+TGG - Chr8:3551321-3551340 MsG0880042090.01.T01:CDS 25.0%
!!! CTTTAGAATGGTATATGTTA+GGG - Chr8:3553503-3553522 MsG0880042090.01.T01:intron 25.0%
!!! GTTGATAATTGAACAGATTA+TGG + Chr8:3550049-3550068 None:intergenic 25.0%
!!! GTTGTTTTTTCTTGAAAGAT+TGG - Chr8:3549765-3549784 MsG0880042090.01.T01:CDS 25.0%
!!! TATTTTAAACCAACAGGATA+TGG - Chr8:3551465-3551484 MsG0880042090.01.T01:intron 25.0%
!!! TGATTTTGAATTGTTTCTCA+AGG - Chr8:3549996-3550015 MsG0880042090.01.T01:intron 25.0%
AAAACTTAGGTTCCAAACTT+AGG + Chr8:3555260-3555279 None:intergenic 30.0%
AAAATAAGGAAAACTCGGTT+TGG + Chr8:3550465-3550484 None:intergenic 30.0%
AAAATTGACCACATGAATCA+TGG + Chr8:3552158-3552177 None:intergenic 30.0%
AAAGGTCAATGTATGATACT+AGG - Chr8:3555172-3555191 MsG0880042090.01.T01:five_prime_UTR 30.0%
AACTTTCAATCTTGACATCT+TGG + Chr8:3549902-3549921 None:intergenic 30.0%
AATATGAGCAATACTCAACA+AGG - Chr8:3554751-3554770 MsG0880042090.01.T01:intron 30.0%
AATCTTGGAAATTGAACGAT+AGG + Chr8:3554701-3554720 None:intergenic 30.0%
ATATGTCAACAATGTCTTTG+AGG - Chr8:3552443-3552462 MsG0880042090.01.T01:intron 30.0%
ATGTCAAGATTGAAAGTTGT+GGG - Chr8:3549904-3549923 MsG0880042090.01.T01:intron 30.0%
ATTAACCTGTCTATCCAAAT+AGG + Chr8:3550316-3550335 None:intergenic 30.0%
ATTAGCCCATTCCAAAATAT+CGG + Chr8:3553408-3553427 None:intergenic 30.0%
ATTAGCTAGCATACCAAATT+CGG - Chr8:3554529-3554548 MsG0880042090.01.T01:intron 30.0%
CAAATTAATGCACACATCTA+AGG - Chr8:3553543-3553562 MsG0880042090.01.T01:intron 30.0%
CATAAGACATTAGATATGTC+TGG - Chr8:3549612-3549631 MsG0880042090.01.T01:three_prime_UTR 30.0%
CCTAACATATACCATTCTAA+AGG + Chr8:3553505-3553524 None:intergenic 30.0%
CCTCATTATAGTTGATCAAA+AGG - Chr8:3555154-3555173 MsG0880042090.01.T01:five_prime_UTR 30.0%
GAAAAGATTACTCAATCCAT+GGG - Chr8:3550957-3550976 MsG0880042090.01.T01:intron 30.0%
GAAACAGCTTAAATTCTCAT+TGG - Chr8:3553143-3553162 MsG0880042090.01.T01:intron 30.0%
GATTACTTGTGCAATACATT+TGG + Chr8:3554160-3554179 None:intergenic 30.0%
GATTAGGGTTACAAAGTTTA+AGG - Chr8:3554663-3554682 MsG0880042090.01.T01:intron 30.0%
GCAACCAAGTTGTTAAAATA+GGG - Chr8:3553121-3553140 MsG0880042090.01.T01:intron 30.0%
GGTGATATCACAGATTATTA+AGG - Chr8:3551176-3551195 MsG0880042090.01.T01:intron 30.0%
GTAACTGAATCTGCTAAAAA+GGG + Chr8:3552064-3552083 None:intergenic 30.0%
TATAGCATACACACTTATCA+TGG - Chr8:3550344-3550363 MsG0880042090.01.T01:intron 30.0%
TGAATTGTAAAAGAGAGAGT+GGG + Chr8:3554421-3554440 None:intergenic 30.0%
TGACATATGTTGAATTTCCA+AGG + Chr8:3552431-3552450 None:intergenic 30.0%
TGCAACCAAGTTGTTAAAAT+AGG - Chr8:3553120-3553139 MsG0880042090.01.T01:intron 30.0%
TGTAACTGAATCTGCTAAAA+AGG + Chr8:3552065-3552084 None:intergenic 30.0%
TGTACTCTGATTTCTTCAAA+TGG + Chr8:3551543-3551562 None:intergenic 30.0%
TTAAATGGCATCTTAATTGG+AGG + Chr8:3553087-3553106 None:intergenic 30.0%
TTAACCTGTCTATCCAAATA+GGG + Chr8:3550315-3550334 None:intergenic 30.0%
TTACATCCATTGAGTTTGTA+TGG - Chr8:3552978-3552997 MsG0880042090.01.T01:CDS 30.0%
TTATTATAGGAGGAAATCCA+AGG + Chr8:3555291-3555310 None:intergenic 30.0%
TTCACCTGAAATTGTATAAC+CGG + Chr8:3554900-3554919 None:intergenic 30.0%
TTCTCTTATCACTTTCTTTG+TGG + Chr8:3553591-3553610 None:intergenic 30.0%
TTGAATTGTAAAAGAGAGAG+TGG + Chr8:3554422-3554441 None:intergenic 30.0%
TTGTGTAGTTTATGAGTATG+AGG - Chr8:3549839-3549858 MsG0880042090.01.T01:CDS 30.0%
TTTGTATCAGAATACTGATG+AGG - Chr8:3549969-3549988 MsG0880042090.01.T01:intron 30.0%
! AACCACTTTAGAGATTGTTT+GGG + Chr8:3550412-3550431 None:intergenic 30.0%
! AATAACTGATGCCGATATTT+TGG - Chr8:3553394-3553413 MsG0880042090.01.T01:CDS 30.0%
! ATCAAACTTTAGCTTATCTG+TGG - Chr8:3553306-3553325 MsG0880042090.01.T01:intron 30.0%
! CCTTTTGATCAACTATAATG+AGG + Chr8:3555157-3555176 None:intergenic 30.0%
! GAAAAAAAGTTGATCCATAG+TGG + Chr8:3550117-3550136 None:intergenic 30.0%
! GATGTCAAGGTAACTAATTT+TGG - Chr8:3551589-3551608 MsG0880042090.01.T01:CDS 30.0%
! TAACCACTTTAGAGATTGTT+TGG + Chr8:3550413-3550432 None:intergenic 30.0%
! TACTTGATCTGATTGTTTTC+TGG + Chr8:3550274-3550293 None:intergenic 30.0%
! TATTTGATTTAGGCCCTATT+TGG - Chr8:3550299-3550318 MsG0880042090.01.T01:intron 30.0%
! TGAATTGCTTGATGATAGTA+AGG - Chr8:3551378-3551397 MsG0880042090.01.T01:CDS 30.0%
! TGTAGTTTTCTATTACGCAA+TGG - Chr8:3554641-3554660 MsG0880042090.01.T01:intron 30.0%
! TTAATCTAAGATAAACTCGC+AGG - Chr8:3554554-3554573 MsG0880042090.01.T01:intron 30.0%
! TTAATTAGTGCCGAGTAATT+TGG + Chr8:3553247-3553266 None:intergenic 30.0%
! TTTCTATTACGCAATGGATT+AGG - Chr8:3554647-3554666 MsG0880042090.01.T01:intron 30.0%
! TTTGAATTGTTTCTCAAGGT+AGG - Chr8:3550000-3550019 MsG0880042090.01.T01:intron 30.0%
!! CCTTTAGAATGGTATATGTT+AGG - Chr8:3553502-3553521 MsG0880042090.01.T01:intron 30.0%
!! TATATCCATTTTTCTCGTGT+AGG - Chr8:3552301-3552320 MsG0880042090.01.T01:CDS 30.0%
!! TTCTATTACGCAATGGATTA+GGG - Chr8:3554648-3554667 MsG0880042090.01.T01:intron 30.0%
!!! CCCTTAAGTTTTTTAGTAAC+AGG - Chr8:3552003-3552022 MsG0880042090.01.T01:intron 30.0%
!!! GTGTAGGTTTTAAGACTTAA+AGG + Chr8:3552034-3552053 None:intergenic 30.0%
!!! GTTTCCCTATTTTAACAACT+TGG + Chr8:3553128-3553147 None:intergenic 30.0%
!!! TATCAACTTTTTGAGTGTAG+TGG - Chr8:3550062-3550081 MsG0880042090.01.T01:intron 30.0%
AACAAGCTGAAAACAGCTTA+TGG + Chr8:3552800-3552819 None:intergenic 35.0%
AACCATTTAATCCCTGAGAA+TGG + Chr8:3553883-3553902 None:intergenic 35.0%
AAGAATGCTGAGGAATTCTT+TGG + Chr8:3550627-3550646 None:intergenic 35.0%
AAGACATCACTGAGGTAATT+TGG - Chr8:3554371-3554390 MsG0880042090.01.T01:intron 35.0%
AATTGGGGACTTGTAACAAA+AGG - Chr8:3554009-3554028 MsG0880042090.01.T01:CDS 35.0%
ACAAGACTTCATTGAAGGAA+GGG - Chr8:3551053-3551072 MsG0880042090.01.T01:intron 35.0%
ACCATTTAATCCCTGAGAAT+GGG + Chr8:3553882-3553901 None:intergenic 35.0%
ACTAGTGCTGTAATGATTAC+AGG - Chr8:3550554-3550573 MsG0880042090.01.T01:intron 35.0%
ACTTATTGTGTGAAGCAATG+TGG + Chr8:3550664-3550683 None:intergenic 35.0%
AGTCTCATAAGTGCTTATAC+TGG + Chr8:3552742-3552761 None:intergenic 35.0%
ATCAGTATTGCAAGAAAGCT+AGG - Chr8:3554325-3554344 MsG0880042090.01.T01:intron 35.0%
ATTAGATATGTCTGGTCACT+GGG - Chr8:3549620-3549639 MsG0880042090.01.T01:three_prime_UTR 35.0%
ATTAGTTACCTTGACATCAG+AGG + Chr8:3551587-3551606 None:intergenic 35.0%
CAAGGCACATTACAAAACTT+AGG + Chr8:3555273-3555292 None:intergenic 35.0%
CACCTTAACAATATCTTCTC+TGG + Chr8:3551511-3551530 None:intergenic 35.0%
CAGAGAAGATATTGTTAAGG+TGG - Chr8:3551509-3551528 MsG0880042090.01.T01:intron 35.0%
CAGGACAAAAGTTTATCTGA+TGG - Chr8:3553940-3553959 MsG0880042090.01.T01:intron 35.0%
CATTTATAGTAGGGTCTGTT+TGG - Chr8:3552690-3552709 MsG0880042090.01.T01:intron 35.0%
CGAAAAGATTACTCAATCCA+TGG - Chr8:3550956-3550975 MsG0880042090.01.T01:intron 35.0%
CTCTTCGAAATTGCAAAAGA+CGG - Chr8:3550783-3550802 MsG0880042090.01.T01:CDS 35.0%
CTTAACTCTGCTAAAGCTAT+TGG - Chr8:3551006-3551025 MsG0880042090.01.T01:intron 35.0%
CTTGAACATTCTGACAAGAT+GGG - Chr8:3551789-3551808 MsG0880042090.01.T01:intron 35.0%
CTTGTAACAAAAGGAGTAAC+TGG - Chr8:3554018-3554037 MsG0880042090.01.T01:CDS 35.0%
GAATCTGCTAAAAAGGGTAA+CGG + Chr8:3552058-3552077 None:intergenic 35.0%
GAATTCCTCAGCATTCTTAA+AGG - Chr8:3550629-3550648 MsG0880042090.01.T01:intron 35.0%
GATGTCAAGATTGAAAGTTG+TGG - Chr8:3549903-3549922 MsG0880042090.01.T01:intron 35.0%
GGAAATAGTAGTAAGCTAGA+TGG + Chr8:3550838-3550857 None:intergenic 35.0%
GTAGTTTATGAGTATGAGGA+GGG - Chr8:3549843-3549862 MsG0880042090.01.T01:intron 35.0%
GTTAAACATCTAGTCCACAT+AGG + Chr8:3552114-3552133 None:intergenic 35.0%
TAAAACACCCTCATGAAGAA+AGG - Chr8:3554967-3554986 MsG0880042090.01.T01:intron 35.0%
TCAACACCATACAAACTCAA+TGG + Chr8:3552987-3553006 None:intergenic 35.0%
TCAGTATTGCAAGAAAGCTA+GGG - Chr8:3554326-3554345 MsG0880042090.01.T01:intron 35.0%
TCTTGAACATTCTGACAAGA+TGG - Chr8:3551788-3551807 MsG0880042090.01.T01:intron 35.0%
TGTAGTTTATGAGTATGAGG+AGG - Chr8:3549842-3549861 MsG0880042090.01.T01:intron 35.0%
TTCAATTACTTGCACTTAGC+AGG + Chr8:3552572-3552591 None:intergenic 35.0%
TTCCAAGGCTATTAATCCAA+AGG + Chr8:3552416-3552435 None:intergenic 35.0%
TTCTCATTGGTAAATGTTGC+TGG - Chr8:3553156-3553175 MsG0880042090.01.T01:intron 35.0%
! AAACAAGTGTGTCACTATCT+AGG + Chr8:3552948-3552967 None:intergenic 35.0%
! AAGCAGCATGAACAGTTTTA+AGG - Chr8:3553454-3553473 MsG0880042090.01.T01:intron 35.0%
! AATGCCGGTTATACAATTTC+AGG - Chr8:3554893-3554912 MsG0880042090.01.T01:CDS 35.0%
! AGGCTGCTTTGAATATTGAA+AGG + Chr8:3553485-3553504 None:intergenic 35.0%
! AGTTGGTTCAACGATAATCT+TGG + Chr8:3554716-3554735 None:intergenic 35.0%
! ATCTTTTCTCTTCATCTGCA+TGG + Chr8:3554289-3554308 None:intergenic 35.0%
! ATTCAAAGCAGCCTTTAGAA+TGG - Chr8:3553491-3553510 MsG0880042090.01.T01:intron 35.0%
! GAGGAGTTTTCTTTAGATTG+AGG + Chr8:3551351-3551370 None:intergenic 35.0%
! GATATCCTTTGTGTCAGTTT+TGG + Chr8:3553640-3553659 None:intergenic 35.0%
! GTCTTTGAGGATCTTAGAAA+CGG - Chr8:3552456-3552475 MsG0880042090.01.T01:intron 35.0%
! TCATTGGTTGAAGGATCAAT+GGG + Chr8:3550762-3550781 None:intergenic 35.0%
! TCATTTTCTTCCCATTCTCA+GGG - Chr8:3553869-3553888 MsG0880042090.01.T01:intron 35.0%
! TCTTTGAGGATCTTAGAAAC+GGG - Chr8:3552457-3552476 MsG0880042090.01.T01:intron 35.0%
! TGATTTTCATTCCTTTCCCA+TGG + Chr8:3550976-3550995 None:intergenic 35.0%
! TGTTATAGGAGTGTAAAGCA+AGG + Chr8:3554244-3554263 None:intergenic 35.0%
! TTCATTTTCTTCCCATTCTC+AGG - Chr8:3553868-3553887 MsG0880042090.01.T01:intron 35.0%
!! ACATTTGCAAATTCTAGAGC+AGG - Chr8:3550594-3550613 MsG0880042090.01.T01:intron 35.0%
!! CATTAATTTGTCAGTGTGTG+TGG + Chr8:3553533-3553552 None:intergenic 35.0%
!! CTAAGTTTTGTAATGTGCCT+TGG - Chr8:3555271-3555290 MsG0880042090.01.T01:five_prime_UTR 35.0%
!! GCTGTTTTACTAAGCTATCT+TGG + Chr8:3552835-3552854 None:intergenic 35.0%
!! TCTTTCTTCTCTAGAGTCTT+CGG + Chr8:3552385-3552404 None:intergenic 35.0%
!! TCTTTGCAGATGGATTCTTT+TGG - Chr8:3553008-3553027 MsG0880042090.01.T01:CDS 35.0%
!!! TGATGCCGATATTTTGGAAT+GGG - Chr8:3553400-3553419 MsG0880042090.01.T01:CDS 35.0%
!!! TTTCTTCATGAGGGTGTTTT+AGG + Chr8:3554968-3554987 None:intergenic 35.0%
!!! TTTTTTATAGCCAGTGTGGA+AGG + Chr8:3551744-3551763 None:intergenic 35.0%
AAGATTATTCTGACCTGTGC+TGG + Chr8:3551893-3551912 None:intergenic 40.0%
ACCAGTCTAAACACATTGCA+AGG + Chr8:3553799-3553818 None:intergenic 40.0%
ACCTTGCAATGTGTTTAGAC+TGG - Chr8:3553795-3553814 MsG0880042090.01.T01:CDS 40.0%
AGCTATTAAGTGTGGTGAGA+AGG + Chr8:3549479-3549498 None:intergenic 40.0%
ATACACTAATCCTTCCACAC+TGG - Chr8:3551731-3551750 MsG0880042090.01.T01:CDS 40.0%
ATCTTCCAGTTCACAATTCC+TGG + Chr8:3553054-3553073 None:intergenic 40.0%
ATTACCTCAGTGATGTCTTC+AGG + Chr8:3554370-3554389 None:intergenic 40.0%
CAATGGGAAGATACTTCTTG+AGG + Chr8:3550746-3550765 None:intergenic 40.0%
CACAAGACTTCATTGAAGGA+AGG - Chr8:3551052-3551071 MsG0880042090.01.T01:intron 40.0%
CATTAGATATGTCTGGTCAC+TGG - Chr8:3549619-3549638 MsG0880042090.01.T01:three_prime_UTR 40.0%
CCATTCCTACACGAGAAAAA+TGG + Chr8:3552309-3552328 None:intergenic 40.0%
CGCCAGAGAAGATATTGTTA+AGG - Chr8:3551506-3551525 MsG0880042090.01.T01:intron 40.0%
CTGGTGCAAGAACATTTAGA+AGG + Chr8:3551710-3551729 None:intergenic 40.0%
GAACTTCAGATAGTGAGAGT+GGG - Chr8:3555000-3555019 MsG0880042090.01.T01:intron 40.0%
GAGCAATACTCAACAAGGAA+AGG - Chr8:3554756-3554775 MsG0880042090.01.T01:intron 40.0%
GATTACTCAATCCATGGGAA+AGG - Chr8:3550962-3550981 MsG0880042090.01.T01:intron 40.0%
GCTATTAAGTGTGGTGAGAA+GGG + Chr8:3549478-3549497 None:intergenic 40.0%
GGATGTACAGTAGTCAACAT+TGG - Chr8:3551027-3551046 MsG0880042090.01.T01:intron 40.0%
GTATCAGAATACTGATGAGG+AGG - Chr8:3549972-3549991 MsG0880042090.01.T01:intron 40.0%
GTCCACATAGGACAAGTTAA+CGG + Chr8:3552102-3552121 None:intergenic 40.0%
GTTCACAACCATGATTCATG+TGG - Chr8:3552147-3552166 MsG0880042090.01.T01:intron 40.0%
TAACAGCTAGCATCATGTCT+TGG - Chr8:3554940-3554959 MsG0880042090.01.T01:intron 40.0%
TAACTTCTCCTCTGATGTCA+AGG - Chr8:3551576-3551595 MsG0880042090.01.T01:CDS 40.0%
TAGTCATTGCTAAACGACAG+TGG + Chr8:3554847-3554866 None:intergenic 40.0%
TCAACTCTTCCATATCCTGT+TGG + Chr8:3551477-3551496 None:intergenic 40.0%
TCAAGCAATTCAAGAAGCTG+AGG + Chr8:3551370-3551389 None:intergenic 40.0%
TCCCATTCTCAGGGATTAAA+TGG - Chr8:3553878-3553897 MsG0880042090.01.T01:intron 40.0%
TGAACCAACTGTCCACTTAT+CGG - Chr8:3554726-3554745 MsG0880042090.01.T01:intron 40.0%
TGATGCTAGCTGTTAGAGTA+AGG + Chr8:3554935-3554954 None:intergenic 40.0%
TGCAATTTCGAAGAGCTCAT+TGG + Chr8:3550778-3550797 None:intergenic 40.0%
TTAGATATGTCTGGTCACTG+GGG - Chr8:3549621-3549640 MsG0880042090.01.T01:three_prime_UTR 40.0%
TTGCAGCAAGCTTATCAATG+TGG - Chr8:3550897-3550916 MsG0880042090.01.T01:intron 40.0%
! AGCCCAAACAATCTCTAAAG+TGG - Chr8:3550407-3550426 MsG0880042090.01.T01:intron 40.0%
! ATTCTTGTTTCAGCGTCATC+TGG - Chr8:3551146-3551165 MsG0880042090.01.T01:intron 40.0%
! CTCATTGGTTGAAGGATCAA+TGG + Chr8:3550763-3550782 None:intergenic 40.0%
! GGAGAGAAATCTGTTTTGTC+TGG + Chr8:3552341-3552360 None:intergenic 40.0%
! GTCGCTGATTGAATTTCGTA+TGG - Chr8:3551650-3551669 MsG0880042090.01.T01:CDS 40.0%
! GTGAACTGATTCTGAAGACA+TGG + Chr8:3549663-3549682 None:intergenic 40.0%
! GTGGAAGGATTAGTGTATTC+TGG + Chr8:3551729-3551748 None:intergenic 40.0%
! TAAAAAGGGTAACGGTGTGT+AGG + Chr8:3552050-3552069 None:intergenic 40.0%
! TCTAAAGTGGTTAAGCCAGT+AGG - Chr8:3550420-3550439 MsG0880042090.01.T01:intron 40.0%
! TGCAATACTGATGATGTAGC+TGG + Chr8:3554317-3554336 None:intergenic 40.0%
! TTTTTGCTTTGCGACAATGC+CGG - Chr8:3554878-3554897 MsG0880042090.01.T01:CDS 40.0%
!! AAGAAAGAGCATTTCGCCTT+TGG - Chr8:3552397-3552416 MsG0880042090.01.T01:CDS 40.0%
!! AAGGAAAACTCGGTTTGGAT+TGG + Chr8:3550460-3550479 None:intergenic 40.0%
!! ATCCGTTAACTTGTCCTATG+TGG - Chr8:3552097-3552116 MsG0880042090.01.T01:intron 40.0%
!! CCATTTTTCTCGTGTAGGAA+TGG - Chr8:3552306-3552325 MsG0880042090.01.T01:CDS 40.0%
!! CTGATGCCGATATTTTGGAA+TGG - Chr8:3553399-3553418 MsG0880042090.01.T01:CDS 40.0%
!! TCTTTTGGAGACTCTTGAGA+AGG - Chr8:3553023-3553042 MsG0880042090.01.T01:CDS 40.0%
!! TGGTGTTGATTCTTTGCAGA+TGG - Chr8:3552998-3553017 MsG0880042090.01.T01:CDS 40.0%
!!! GGGATTTTTTATAGCCAGTG+TGG + Chr8:3551748-3551767 None:intergenic 40.0%
AGTCCCCAATTTACAGCTCT+AGG + Chr8:3554000-3554019 None:intergenic 45.0%
ATGAGTATGAGGAGGGAAAG+TGG - Chr8:3549850-3549869 MsG0880042090.01.T01:intron 45.0%
CAAAAGACGGCGTTCTTCTT+TGG - Chr8:3550796-3550815 MsG0880042090.01.T01:CDS 45.0%
CAGCCTAGAGCTGTAAATTG+GGG - Chr8:3553994-3554013 MsG0880042090.01.T01:CDS 45.0%
CCACTATGTCTCTTGCAGTT+AGG + Chr8:3551827-3551846 None:intergenic 45.0%
CCACTGTCCTTTCTTCATGA+GGG + Chr8:3554977-3554996 None:intergenic 45.0%
CCTAACTGCAAGAGACATAG+TGG - Chr8:3551824-3551843 MsG0880042090.01.T01:intron 45.0%
CCTCATGAAGAAAGGACAGT+GGG - Chr8:3554975-3554994 MsG0880042090.01.T01:intron 45.0%
CGCCTTTGGATTAATAGCCT+TGG - Chr8:3552411-3552430 MsG0880042090.01.T01:CDS 45.0%
CTGCACCAAAACTGACACAA+AGG - Chr8:3553632-3553651 MsG0880042090.01.T01:intron 45.0%
CTTATCAATGTGGCAGTTCC+GGG - Chr8:3550907-3550926 MsG0880042090.01.T01:intron 45.0%
GAAGTGAAGGAGAGAGAAGT+TGG + Chr8:3549456-3549475 None:intergenic 45.0%
GCACAGAACTAAGAAGCTCA+AGG + Chr8:3553975-3553994 None:intergenic 45.0%
GCAGCCTAGAGCTGTAAATT+GGG - Chr8:3553993-3554012 MsG0880042090.01.T01:CDS 45.0%
GCTGGAAATGACATTGTGCA+GGG - Chr8:3553174-3553193 MsG0880042090.01.T01:intron 45.0%
GCTTATCAATGTGGCAGTTC+CGG - Chr8:3550906-3550925 MsG0880042090.01.T01:intron 45.0%
GGAACTTCAGATAGTGAGAG+TGG - Chr8:3554999-3555018 MsG0880042090.01.T01:intron 45.0%
GGAGAGAGCTTCTTATGTTC+AGG - Chr8:3549945-3549964 MsG0880042090.01.T01:intron 45.0%
GGCACACAAGACTTCATTGA+AGG - Chr8:3551048-3551067 MsG0880042090.01.T01:intron 45.0%
GGGAGAAAATCTGAGTGAGA+AGG - Chr8:3549924-3549943 MsG0880042090.01.T01:intron 45.0%
GTTTGTTCGAGTGTACCTAC+TGG + Chr8:3550438-3550457 None:intergenic 45.0%
TAAAAGAGAGAGTGGGAGCA+AGG + Chr8:3554414-3554433 None:intergenic 45.0%
TAGGCCCTATTTGGATAGAC+AGG - Chr8:3550308-3550327 MsG0880042090.01.T01:intron 45.0%
TAGTGAGAGTGGGAGTCAAT+TGG - Chr8:3555010-3555029 MsG0880042090.01.T01:intron 45.0%
TGAGTATGAGGAGGGAAAGT+GGG - Chr8:3549851-3549870 MsG0880042090.01.T01:intron 45.0%
TGCAGCCTAGAGCTGTAAAT+TGG - Chr8:3553992-3554011 MsG0880042090.01.T01:CDS 45.0%
TGCTCATATTCGCCGATAAG+TGG + Chr8:3554741-3554760 None:intergenic 45.0%
TGCTGGAAATGACATTGTGC+AGG - Chr8:3553173-3553192 MsG0880042090.01.T01:intron 45.0%
TGTCACCAGGAATTGTGAAC+TGG - Chr8:3553046-3553065 MsG0880042090.01.T01:CDS 45.0%
TGTCGTCAGGAATTGCTTGA+AGG + Chr8:3552362-3552381 None:intergenic 45.0%
TTATCAATGTGGCAGTTCCG+GGG - Chr8:3550908-3550927 MsG0880042090.01.T01:intron 45.0%
! ACTGCAAGAGACATAGTGGA+AGG - Chr8:3551828-3551847 MsG0880042090.01.T01:intron 45.0%
! AGCTGCCTTTAAGAATGCTG+AGG + Chr8:3550637-3550656 None:intergenic 45.0%
! TCGAAGAGCTCATTGGTTGA+AGG + Chr8:3550771-3550790 None:intergenic 45.0%
! TCGCACATATTTTCCAGCAC+AGG - Chr8:3551877-3551896 MsG0880042090.01.T01:intron 45.0%
!! TCGTATGGTTCTGACACTAC+AGG - Chr8:3551665-3551684 MsG0880042090.01.T01:CDS 45.0%
!!! AGTATTATATATTTATTTTT+AGG - Chr8:3551931-3551950 MsG0880042090.01.T01:intron 5.0%
AACTTGCGATTTCACGCTCG+TGG - Chr8:3553365-3553384 MsG0880042090.01.T01:intron 50.0%
ACTTGCGATTTCACGCTCGT+GGG - Chr8:3553366-3553385 MsG0880042090.01.T01:intron 50.0%
CAGTGATGTCTTCAGGAAGC+AGG + Chr8:3554363-3554382 None:intergenic 50.0%
CATGAAGAAAGGACAGTGGG+AGG - Chr8:3554978-3554997 MsG0880042090.01.T01:intron 50.0%
CCCACTGTCCTTTCTTCATG+AGG + Chr8:3554978-3554997 None:intergenic 50.0%
CCCTCATGAAGAAAGGACAG+TGG - Chr8:3554974-3554993 MsG0880042090.01.T01:intron 50.0%
GCTTCCTGAAGACATCACTG+AGG - Chr8:3554363-3554382 MsG0880042090.01.T01:intron 50.0%
TCTGACACTACAGGATGCTG+AGG - Chr8:3551674-3551693 MsG0880042090.01.T01:CDS 50.0%
TGTGGTGAGAAGGGAAGTGA+AGG + Chr8:3549469-3549488 None:intergenic 50.0%
TTCAGCGTCATCTGGTGCTT+GGG - Chr8:3551154-3551173 MsG0880042090.01.T01:intron 50.0%
TTCGCCGATAAGTGGACAGT+TGG + Chr8:3554733-3554752 None:intergenic 50.0%
TTTCAGCGTCATCTGGTGCT+TGG - Chr8:3551153-3551172 MsG0880042090.01.T01:intron 50.0%
!! ACTCTTGAGAAGGTGTCACC+AGG - Chr8:3553033-3553052 MsG0880042090.01.T01:CDS 50.0%
TCAGCGTCATCTGGTGCTTG+GGG - Chr8:3551155-3551174 MsG0880042090.01.T01:intron 55.0%
!! CTAGAGTCTTCGGTGTCGTC+AGG + Chr8:3552375-3552394 None:intergenic 55.0%
GCACGCTCGTCAATAGTCCC+CGG + Chr8:3550928-3550947 None:intergenic 60.0%
GCGATTTCACGCTCGTGGGA+AGG - Chr8:3553370-3553389 MsG0880042090.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 3549444 3555330 3549444 ID=MsG0880042090.01;Name=MsG0880042090.01
Chr8 mRNA 3549444 3555330 3549444 ID=MsG0880042090.01.T01;Parent=MsG0880042090.01;Name=MsG0880042090.01.T01;_AED=0.31;_eAED=0.31;_QI=183|0.91|0.92|1|1|1|13|227|633
Chr8 exon 3549444 3549859 3549444 ID=MsG0880042090.01.T01:exon:2254;Parent=MsG0880042090.01.T01
Chr8 exon 3550742 3550831 3550742 ID=MsG0880042090.01.T01:exon:2253;Parent=MsG0880042090.01.T01
Chr8 exon 3551299 3551456 3551299 ID=MsG0880042090.01.T01:exon:2252;Parent=MsG0880042090.01.T01
Chr8 exon 3551558 3551757 3551558 ID=MsG0880042090.01.T01:exon:2251;Parent=MsG0880042090.01.T01
Chr8 exon 3552296 3552451 3552296 ID=MsG0880042090.01.T01:exon:2250;Parent=MsG0880042090.01.T01
Chr8 exon 3552876 3553087 3552876 ID=MsG0880042090.01.T01:exon:2249;Parent=MsG0880042090.01.T01
Chr8 exon 3553177 3553293 3553177 ID=MsG0880042090.01.T01:exon:2248;Parent=MsG0880042090.01.T01
Chr8 exon 3553375 3553443 3553375 ID=MsG0880042090.01.T01:exon:2247;Parent=MsG0880042090.01.T01
Chr8 exon 3553577 3553615 3553577 ID=MsG0880042090.01.T01:exon:2246;Parent=MsG0880042090.01.T01
Chr8 exon 3553700 3553871 3553700 ID=MsG0880042090.01.T01:exon:2245;Parent=MsG0880042090.01.T01
Chr8 exon 3553957 3554198 3553957 ID=MsG0880042090.01.T01:exon:2244;Parent=MsG0880042090.01.T01
Chr8 exon 3554757 3554927 3554757 ID=MsG0880042090.01.T01:exon:2243;Parent=MsG0880042090.01.T01
Chr8 exon 3555061 3555330 3555061 ID=MsG0880042090.01.T01:exon:2242;Parent=MsG0880042090.01.T01
Chr8 five_prime_UTR 3555148 3555330 3555148 ID=MsG0880042090.01.T01:five_prime_utr;Parent=MsG0880042090.01.T01
Chr8 CDS 3555061 3555147 3555061 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3554757 3554927 3554757 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3553957 3554198 3553957 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3553700 3553871 3553700 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3553577 3553615 3553577 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3553375 3553443 3553375 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3553177 3553293 3553177 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3552876 3553087 3552876 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3552296 3552451 3552296 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3551558 3551757 3551558 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3551299 3551456 3551299 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3550742 3550831 3550742 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 CDS 3549671 3549859 3549671 ID=MsG0880042090.01.T01:cds;Parent=MsG0880042090.01.T01
Chr8 three_prime_UTR 3549444 3549670 3549444 ID=MsG0880042090.01.T01:three_prime_utr;Parent=MsG0880042090.01.T01
Gene Sequence

>MsG0880042090.01.T01

ATGTCTGGTCACTGGGGAATTCTTGTTTCAGATCCATGTCTTCAGAATCAGTTCACACAAGTTGAACTTAGAAGCTTAAAAACACATTTTATGAGTATGAGGAGGGAAAGTGGGAAGCTTGTGATTGCAGATTTAGCTTCCAAGATGTCAAGATTGAAAGTTGTGGGAGAAAATCTGAGTGAGAAGGAGAGAGCTTCTTATGTTCAGGATTTGTATCAGAATACTGATGAGGAGGTTGATTTTGAATTGTTTCTCAAGGTATACTTGAAACTACAAACATTTGCAAATTCTAGAGCAGGAAGTAGTCCAAAGAATTCCTCAGCATTCTTAAAGGCAGCTACTACCACATTGCTTCACACAATAAGTGAATCTGAGAAATCATCATATGTTACTCATATAAATCACTATCTTTCACAAGATGAGTTCCTCAAGAAGTATCTTCCCATTGATCCTTCAACCAATGAGCTCTTCGAAATTGCAAAAGACGGCGTTCTTCTTTGCAAGCTTATCAATGTGGCAGTTCCGGGGACTATTGACGAGCGTGCAATCAATACGAAAAGATTACTCAATCCATGGGAAAGGAATGAAAATCATACACTTTGTCTTAACTCTGCTAAAGCTATTGGATGTACAGTAGTCAACATTGGCACACAAGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGGGTGATATCACAGATTATTAAGATACAACTACTGGCAGACCTCAATCTAAAGAAAACTCCTCAGCTTCTTGAATTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTAGCGCCAGAGAAGATATTGTTAAGGTGGATGAATTTCCATTTGAAGAAATCAGAGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTCAAGGATGCTGAGGCTTACGCACACCTTCTAAATGTTCTTGCACCAGAATACACTAATCCTTCCACACTGGCTATAAAAAATCCCTTTGAAAGAGCAAAATTAGTTCTTGAACATTCTGACAAGATGGGCTGCAAGCGATACCTAACTGCAAGAGACATAGTGGAAGGATCTCCAAATCTTAATCTTGCTTTTGTCGCACATATTTTCCAGCACAGGAATGGACTAACTGACCAGACAAAACAGATTTCTCTCCTTCAAGCAATTCCTGACGACACCGAAGACTCTAGAGAAGAAAGAGCATTTCGCCTTTGGATTAATAGCCTTGGAAATTCAACATATGTCAACAATGTCTTTGAGGATCTTAGAAACGGATGGATTCTTTTGGAGACTCTTGAGAAGGTGTCACCAGGAATTGTGAACTGGAAGATTGCTAACAAGCCTCCAATTAAGATGCCATTTAAAAAAGTTGAGAATTGCAACCAAGTTGTTAAAATAGGGAAACAGCTTAAATTCTCATTGGTAAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAGTTAATACTAGCTTATCTGTGGCAATTGATGCGATACAACATACTACAACTTCTAAAGAACTTGCGATTTCACGCTCGTGGGAAGGAAATAACTGATGCCGATATTTTGGAATGGGCTAATAGCAAAGTTAGCAGTACAGGAAGTCAAAGCAGCATGAACAGTTTTAAGGACAAAAGTTTATCTGATGGAATATTTTTCCTTGAGCTTCTTAGTTCTGTGCAGCCTAGAGCTGTAAATTGGGGACTTGTAACAAAAGGAGTGAATCAAAAGATGATCCTTACTCTAACAGCTAGCATCATGTCTTGGTTCCTAAAACACCCTCATGAAGAAAGGACAGTGGGAGGAACTTCAGATAGTGAGAGTGGGAGTCAATTGGAGACTACATCAAATTCAACACTTGATGATTCTGCTTCTGATTCATCTATTGATGAAAATGGAAATATGTAA
Protein sequence

>MsG0880042090.01.T01

MSGHWGILVSDPCLQNQFTQVELRSLKTHFMSMRRESGKLVIADLASKMSRLKVVGENLSEKERASYVQDLYQNTDEEVDFELFLKVYLKLQTFANSRAGSSPKNSSAFLKAATTTLLHTISESEKSSYVTHINHYLSQDEFLKKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLELLDDSKDMEELMNLAPEKILLRWMNFHLKKSEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAIKNPFERAKLVLEHSDKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLTDQTKQISLLQAIPDDTEDSREERAFRLWINSLGNSTYVNNVFEDLRNGWILLETLEKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHARGKEITDADILEWANSKVSSTGSQSSMNSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVNQKMILTLTASIMSWFLKHPHEERTVGGTSDSESGSQLETTSNSTLDDSASDSSIDENGNM*