AlfalfaGEDB | MsG0380012626.01

M. sativa cultivar ZhongmuNo.1 / MsG0380012626.01

KEGG: K15687
GO: GO:0046872
PFAM: PF00642

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012626.01.T01	XP_003599125.1	84.5	200	13	3	127	325	279	461	1.09E-95	303
MsG0380012626.01.T01	XP_003599125.1	78.014	141	25	2	5	145	4	138	2.09E-50	185

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012626.01.T01	E0X9N4	38.095	147	76	5	6	143	6	146	5.84E-16	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012626.01.T01	G7IWL7	84.500	200	13	3	127	325	279	461	5.20e-96	303

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TFs/TRs:

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Gene ID	Type	Classification
MsG0380012626.01.T01	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380012626.01	MsG0380016707.01	0.822752	2.002653e-53	1.691352e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012626.01.T01	MTR_3g028170	84.500	200	13	3	127	325	279	461	1.32e-99	303
MsG0380012626.01.T01	MTR_3g028170	78.014	141	25	2	5	145	4	138	2.53e-54	185
MsG0380012626.01.T01	MTR_3g028190	45.349	86	40	2	6	84	6	91	4.29e-13	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 78 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGAGTCCCTCATGA+TGG	0.533480	3:-21475253	None:intergenic
AAGATGATGCTTGAGAAGCT+CGG	0.614458	3:-21471510	None:intergenic
AATGATGATGCATTCTCATA+TGG	0.418914	3:+21475587	MsG0380012626.01.T01:CDS
AATGGATCCATTTGAGATGA+TGG	0.491467	3:+21475284	MsG0380012626.01.T01:CDS
ACACCGCGCTTGTGAGGTGA+AGG	0.593590	3:-21471619	None:intergenic
ACATGTCATGCATATCGAAA+TGG	0.462288	3:-21475185	None:intergenic
ACCTCACAAGCGCGGTGTAA+AGG	0.435669	3:+21471624	MsG0380012626.01.T01:CDS
ACTTTAGCACTACGAGCCAC+AGG	0.603612	3:-21471562	None:intergenic
AGAAGAAGATGAAGATTACG+AGG	0.692698	3:+21475617	MsG0380012626.01.T01:CDS
AGAGGCCATGGCTCTTGGGA+TGG	0.587677	3:+21475410	MsG0380012626.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACATCTACAAGGATTT+GGG	-	Chr3:21472545-21472564	None:intergenic	30.0%
AACAGAAAAAAGACCAAAGA+GGG	+	Chr3:21474362-21474381	MsG0380012626.01.T01:intron	30.0%
AGAAGTAGTTTCTTCAATCT+TGG	+	Chr3:21473183-21473202	MsG0380012626.01.T01:intron	30.0%
AGATTGAAGAAACTACTTCT+AGG	-	Chr3:21473183-21473202	None:intergenic	30.0%
ATAAGTCAACAACATCTACA+AGG	-	Chr3:21472552-21472571	None:intergenic	30.0%
ATGATAGAATAGTGTGTAAG+TGG	-	Chr3:21473653-21473672	None:intergenic	30.0%
ATTCAAAAGCTCAAACAGAT+TGG	-	Chr3:21473159-21473178	None:intergenic	30.0%
CAATGTCCAAATCAATGATT+AGG	+	Chr3:21473567-21473586	MsG0380012626.01.T01:intron	30.0%
CAATTCCATGAAAATCATCA+GGG	-	Chr3:21475542-21475561	None:intergenic	30.0%
CACTACGTAATAAACACAAT+AGG	-	Chr3:21474542-21474561	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	21471099	21475671	21471099	ID=MsG0380012626.01;Name=MsG0380012626.01
Chr3	mRNA	21471099	21475671	21471099	ID=MsG0380012626.01.T01;Parent=MsG0380012626.01;Name=MsG0380012626.01.T01;_AED=0.49;_eAED=0.51;_QI=0\|0.33\|0.25\|1\|0.33\|0.75\|4\|0\|345
Chr3	exon	21471099	21471196	21471099	ID=MsG0380012626.01.T01:exon:4215;Parent=MsG0380012626.01.T01
Chr3	exon	21471447	21471725	21471447	ID=MsG0380012626.01.T01:exon:4216;Parent=MsG0380012626.01.T01
Chr3	exon	21472283	21472351	21472283	ID=MsG0380012626.01.T01:exon:4217;Parent=MsG0380012626.01.T01
Chr3	exon	21475080	21475671	21475080	ID=MsG0380012626.01.T01:exon:4218;Parent=MsG0380012626.01.T01
Chr3	CDS	21471099	21471196	21471099	ID=MsG0380012626.01.T01:cds;Parent=MsG0380012626.01.T01
Chr3	CDS	21471447	21471725	21471447	ID=MsG0380012626.01.T01:cds;Parent=MsG0380012626.01.T01
Chr3	CDS	21472283	21472351	21472283	ID=MsG0380012626.01.T01:cds;Parent=MsG0380012626.01.T01
Chr3	CDS	21475080	21475671	21475080	ID=MsG0380012626.01.T01:cds;Parent=MsG0380012626.01.T01

Gene Sequence

>MsG0380012626.01.T01

ATGAATTGTTTCAGGGTTTGCAAGTTTTATGCGCGAGGCGTATGTTTGAAAGGCGACCAATGTGATTTTTTCATCAGAGAAAGGATACTGCATCTGATATTTGCGTCTTATTATCAGAAAGGGTCTTGTGCTTATGGTAGTCGGTGCAGATATAAGCACGTCCGAGCTTCTCAAGCATCATCTTCGGCATCTATGGTTTCAGATCCTGCTGCGCCTGTGGCTCGTAGTGCTAAAGTAGCATCAAATTGGGTTCCGAAGGTTACAAAGGTTCCTTCACCTCACAAGCGCGGTGTAAAGGGTTTACAACGCAAGCATCAGGACTCTACCGATGTTGGTGAATCCAGTACTGGTAGTGCTAGACCACATGAATTTGTTTTGTTGATTGATTGCAAACATTTTGACTCTGGAAATGGAAATTGTCCATTGGGGCTAGCTGTTTCTACAAGATTTGTTTCTCTTTTAGGATTTGATATCTGTTACTTTCAGCATACAGTGAAGCCTGGCTCATACACATGGAGACACCGCAGGCCACCACCTCAACGCAGACAAAACCATTTCGATATGCATGACATGTTGGATGTGCTCGGTGAGGTTGATCTATCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGATTTTTTTGAGGGAATGGATCCATTTGAGATGATGGCATTATCAGATTCGCTGGCTGGCGGTTCAGGTCCTTGTTTGGGTCCTTTTGATTCAGACGATGAGGATGATGGGTTTCGTGTTTCTCAAATTGCTGCTATGCAAGAGGCCATGGCTCTTGGGATGGATGCTTTTGGCCCTGATGACGATGACGATGACGATGAGGAAGAGTTTAATGTTTTTCGAATGGCTGCTATGCAAGAGGCCATGGTTTCTGGGATAGATGATTTTGGCCCTGATGATTTTCATGGAATTGATCCTATGGATGCAGCTTTGATATCAATGATGATGCATTCTCATATGGACGACGAAGAAGAAGATGAAGATTACGAGGATGAAGAAGAATACACTGATGATGAATATTAG

Protein sequence

>MsG0380012626.01.T01

MNCFRVCKFYARGVCLKGDQCDFFIRERILHLIFASYYQKGSCAYGSRCRYKHVRASQASSSASMVSDPAAPVARSAKVASNWVPKVTKVPSPHKRGVKGLQRKHQDSTDVGESSTGSARPHEFVLLIDCKHFDSGNGNCPLGLAVSTRFVSLLGFDICYFQHTVKPGSYTWRHRRPPPQRRQNHFDMHDMLDVLGEVDLSSGEFYSIMRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDEDDGFRVSQIAAMQEAMALGMDAFGPDDDDDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFHGIDPMDAALISMMMHSHMDDEEEDEDYEDEEEYTDDEY*