Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012645.01.T01 | KEH18097.1 | 90.761 | 184 | 10 | 1 | 12 | 188 | 211 | 394 | 1.72E-114 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012645.01.T01 | Q8L7B2 | 59.146 | 164 | 65 | 1 | 12 | 175 | 215 | 376 | 3.82E-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012645.01.T01 | A0A072TKY7 | 90.761 | 184 | 10 | 1 | 12 | 188 | 211 | 394 | 8.20e-115 | 346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380012645.01 | MsG0780036201.01 | 0.807420 | 5.098851e-50 | 2.838698e-47 |
| MsG0280009664.01 | MsG0380012645.01 | 0.831969 | 1.234754e-55 | 1.361227e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012645.01.T01 | MTR_8g011350 | 90.761 | 184 | 10 | 1 | 12 | 188 | 211 | 394 | 2.08e-118 | 346 |
| MsG0380012645.01.T01 | MTR_8g011350 | 90.761 | 184 | 10 | 1 | 12 | 188 | 211 | 394 | 2.21e-118 | 346 |
| MsG0380012645.01.T01 | MTR_7g051430 | 59.064 | 171 | 67 | 3 | 12 | 180 | 210 | 379 | 1.55e-65 | 208 |
| MsG0380012645.01.T01 | MTR_7g051430 | 59.064 | 171 | 67 | 3 | 12 | 180 | 210 | 379 | 2.02e-64 | 208 |
| MsG0380012645.01.T01 | MTR_7g080180 | 50.515 | 194 | 86 | 4 | 12 | 197 | 210 | 401 | 5.30e-59 | 193 |
| MsG0380012645.01.T01 | MTR_7g080180 | 50.515 | 194 | 86 | 4 | 12 | 197 | 210 | 401 | 1.27e-58 | 192 |
| MsG0380012645.01.T01 | MTR_2g018630 | 28.655 | 171 | 83 | 6 | 12 | 180 | 112 | 245 | 1.39e-13 | 69.3 |
| MsG0380012645.01.T01 | MTR_2g018630 | 28.655 | 171 | 83 | 6 | 12 | 180 | 217 | 350 | 1.55e-13 | 69.7 |
| MsG0380012645.01.T01 | MTR_2g018590 | 43.421 | 76 | 40 | 2 | 12 | 85 | 214 | 288 | 4.92e-13 | 68.2 |
| MsG0380012645.01.T01 | MTR_0024s0320 | 82.857 | 35 | 6 | 0 | 12 | 46 | 39 | 73 | 5.49e-13 | 65.1 |
| MsG0380012645.01.T01 | MTR_4g021520 | 31.579 | 171 | 81 | 6 | 12 | 180 | 220 | 356 | 4.39e-12 | 65.1 |
| MsG0380012645.01.T01 | MTR_4g021520 | 44.000 | 75 | 39 | 2 | 12 | 84 | 220 | 293 | 5.08e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012645.01.T01 | AT4G12910 | 59.146 | 164 | 65 | 1 | 12 | 175 | 215 | 376 | 2.24e-64 | 207 |
| MsG0380012645.01.T01 | AT4G12910 | 59.146 | 164 | 65 | 1 | 12 | 175 | 215 | 376 | 3.89e-64 | 207 |
| MsG0380012645.01.T01 | AT3G25420 | 54.545 | 176 | 74 | 2 | 12 | 183 | 208 | 381 | 4.13e-60 | 196 |
| MsG0380012645.01.T01 | AT2G22920 | 39.785 | 93 | 54 | 1 | 12 | 102 | 26 | 118 | 3.10e-14 | 70.5 |
| MsG0380012645.01.T01 | AT2G22920 | 39.785 | 93 | 54 | 1 | 12 | 102 | 205 | 297 | 5.66e-14 | 70.1 |
| MsG0380012645.01.T01 | AT2G22920 | 26.222 | 225 | 137 | 6 | 12 | 229 | 205 | 407 | 8.18e-14 | 70.1 |
| MsG0380012645.01.T01 | AT2G22920 | 39.785 | 93 | 54 | 1 | 12 | 102 | 205 | 297 | 8.49e-14 | 70.5 |
| MsG0380012645.01.T01 | AT5G09640 | 48.649 | 74 | 36 | 1 | 12 | 83 | 207 | 280 | 1.28e-13 | 69.7 |
| MsG0380012645.01.T01 | AT1G73270 | 39.785 | 93 | 48 | 2 | 12 | 99 | 213 | 302 | 2.00e-12 | 66.2 |
| MsG0380012645.01.T01 | AT1G73270 | 38.889 | 90 | 53 | 1 | 12 | 99 | 213 | 302 | 2.12e-12 | 66.2 |
| MsG0380012645.01.T01 | AT2G22980 | 40.789 | 76 | 43 | 1 | 12 | 85 | 84 | 159 | 1.45e-11 | 63.2 |
| MsG0380012645.01.T01 | AT2G22980 | 37.778 | 90 | 54 | 1 | 12 | 99 | 201 | 290 | 2.31e-11 | 63.2 |
| MsG0380012645.01.T01 | AT2G22980 | 40.789 | 76 | 43 | 1 | 12 | 85 | 201 | 276 | 2.44e-11 | 63.2 |
| MsG0380012645.01.T01 | AT2G22980 | 37.778 | 90 | 54 | 1 | 12 | 99 | 203 | 292 | 2.84e-11 | 62.8 |
| MsG0380012645.01.T01 | AT2G22980 | 40.789 | 76 | 43 | 1 | 12 | 85 | 201 | 276 | 2.88e-11 | 62.8 |
| MsG0380012645.01.T01 | AT2G22970 | 42.105 | 76 | 41 | 2 | 12 | 85 | 205 | 279 | 9.63e-11 | 61.2 |
Find 49 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTGATTTAGCAGAAT+TGG | 0.262392 | 3:-21826871 | None:intergenic |
| AGATTATCACATCCTATATT+AGG | 0.278941 | 3:+21826188 | MsG0380012645.01.T01:CDS |
| ACTTTGCCTTTCAACCAATT+TGG | 0.281351 | 3:-21826955 | None:intergenic |
| CATCTCTCACAGGTGCTCTA+AGG | 0.317256 | 3:-21826291 | None:intergenic |
| CCGTCTAGTTTCCGTGAGTT+AGG | 0.343796 | 3:+21826214 | MsG0380012645.01.T01:CDS |
| CATCACTTCATCACCAACTT+TGG | 0.376737 | 3:-21826916 | None:intergenic |
| TATCTCAGATGAATTGTTTG+AGG | 0.408758 | 3:+21825830 | MsG0380012645.01.T01:CDS |
| AGAGTCTAAATATATAATAC+TGG | 0.418253 | 3:-21825721 | None:intergenic |
| ATCTCTCACAGGTGCTCTAA+GGG | 0.423846 | 3:-21826290 | None:intergenic |
| TGTTCCATTTGTACATGGGA+TGG | 0.425923 | 3:+21825803 | MsG0380012645.01.T01:CDS |
| GAAGTCACTTGAGGCCAAAT+TGG | 0.431505 | 3:+21826941 | MsG0380012645.01.T01:CDS |
| ACTAGACGGTAACCTAATAT+AGG | 0.445194 | 3:-21826200 | None:intergenic |
| GCTCTTGTTCCATTTGTACA+TGG | 0.446060 | 3:+21825798 | MsG0380012645.01.T01:CDS |
| GTTCCATTTGTACATGGGAT+GGG | 0.456629 | 3:+21825804 | MsG0380012645.01.T01:CDS |
| TTCTGCTAAATCAATTGAAA+AGG | 0.460788 | 3:+21826875 | MsG0380012645.01.T01:CDS |
| AGACCCATCCCATGTACAAA+TGG | 0.478452 | 3:-21825807 | None:intergenic |
| TCTCCTGCTGGTTACAAAGT+TGG | 0.482060 | 3:+21825741 | MsG0380012645.01.T01:CDS |
| GGTTGAACAATGAAGAAGTC+AGG | 0.487179 | 3:+21826556 | MsG0380012645.01.T01:CDS |
| GCCTCTGTGCCGTGGTAGCA+TGG | 0.493000 | 3:-21826160 | None:intergenic |
| AAAGAATGTTCGGTCGTGCT+TGG | 0.503362 | 3:+21826266 | MsG0380012645.01.T01:CDS |
| TTGAGGCCAAATTGGTTGAA+AGG | 0.513337 | 3:+21826949 | MsG0380012645.01.T01:CDS |
| TTGATAAGTTGTGGCCAAGT+TGG | 0.517392 | 3:-21826322 | None:intergenic |
| AGGTTAACCGCGAGTGTGAT+GGG | 0.518035 | 3:+21825965 | MsG0380012645.01.T01:CDS |
| TTTCCAACTTTGTAACCAGC+AGG | 0.523091 | 3:-21825744 | None:intergenic |
| GTTACAGATGAACAAATTGA+TGG | 0.533753 | 3:+21825771 | MsG0380012645.01.T01:CDS |
| GAGGTTAACCGCGAGTGTGA+TGG | 0.533915 | 3:+21825964 | MsG0380012645.01.T01:CDS |
| CCTGTGAGGAAAAGAATGTT+CGG | 0.536839 | 3:+21826256 | MsG0380012645.01.T01:CDS |
| GCTGGTTACAAAGTTGGAAA+TGG | 0.538341 | 3:+21825747 | MsG0380012645.01.T01:CDS |
| AAAGCATTAAAAGCCAAAGT+TGG | 0.538383 | 3:+21826903 | MsG0380012645.01.T01:CDS |
| ATATATTTAGACTCTCCTGC+TGG | 0.546816 | 3:+21825729 | MsG0380012645.01.T01:CDS |
| GAGATGGCAACGTACCAACT+TGG | 0.557515 | 3:+21826308 | MsG0380012645.01.T01:CDS |
| CTCTTGTTCCATTTGTACAT+GGG | 0.559485 | 3:+21825799 | MsG0380012645.01.T01:CDS |
| TTTCAGTCTCACCTAACTCA+CGG | 0.568224 | 3:-21826225 | None:intergenic |
| GTAAAGAAACATACTGTGCA+TGG | 0.569087 | 3:-21826358 | None:intergenic |
| CTTAGAGCACCTGTGAGAGA+TGG | 0.577548 | 3:+21826292 | MsG0380012645.01.T01:CDS |
| TTGGTTGAAAGGCAAAGTAA+AGG | 0.579751 | 3:+21826960 | MsG0380012645.01.T01:CDS |
| TTGAAAGGCAAAGTAAAGGT+AGG | 0.581011 | 3:+21826964 | MsG0380012645.01.T01:CDS |
| GGTACGTTGCCATCTCTCAC+AGG | 0.581740 | 3:-21826301 | None:intergenic |
| TCTTATCTGCCTCTGTGCCG+TGG | 0.592423 | 3:-21826168 | None:intergenic |
| TTGTTGCTATTGATAAGTTG+TGG | 0.616997 | 3:-21826331 | None:intergenic |
| ATGGCTCTGTTGCAAATGCA+TGG | 0.623040 | 3:+21826535 | MsG0380012645.01.T01:CDS |
| CAAAGTTGGTGATGAAGTGA+TGG | 0.627478 | 3:+21826917 | MsG0380012645.01.T01:CDS |
| CCTAACTCACGGAAACTAGA+CGG | 0.643978 | 3:-21826214 | None:intergenic |
| AGAAATTCCCATCACACTCG+CGG | 0.644090 | 3:-21825972 | None:intergenic |
| ATTCTAGAACCATGCTACCA+CGG | 0.649207 | 3:+21826151 | MsG0380012645.01.T01:CDS |
| GAAAGCAATTCACACTGCAG+AGG | 0.668971 | 3:+21826578 | MsG0380012645.01.T01:CDS |
| TCTCTCACAGGTGCTCTAAG+GGG | 0.683162 | 3:-21826289 | None:intergenic |
| AGTGATGGTGAAGTCACTTG+AGG | 0.722649 | 3:+21826932 | MsG0380012645.01.T01:CDS |
| ACCATGCTACCACGGCACAG+AGG | 0.736692 | 3:+21826159 | MsG0380012645.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTAGCATTTCTA+AGG | - | Chr3:21826476-21826495 | None:intergenic | 15.0% |
| !! | TTATAAGAAATAAGTGAATT+TGG | + | Chr3:21826073-21826092 | MsG0380012645.01.T01:intron | 15.0% |
| !!! | TTGATGATTCTTATTATTTT+AGG | + | Chr3:21826102-21826121 | MsG0380012645.01.T01:intron | 15.0% |
| !! | AGAGTCTAAATATATAATAC+TGG | - | Chr3:21825724-21825743 | None:intergenic | 20.0% |
| !! | AGTATAAAATACAATCATGA+TGG | + | Chr3:21826732-21826751 | MsG0380012645.01.T01:intron | 20.0% |
| !! | GTATAAAATACAATCATGAT+GGG | + | Chr3:21826733-21826752 | MsG0380012645.01.T01:intron | 20.0% |
| !! | TTATACTAAATATACATCGA+AGG | - | Chr3:21826719-21826738 | None:intergenic | 20.0% |
| !!! | AATAGATTTTCTTTTAGACA+AGG | - | Chr3:21827011-21827030 | None:intergenic | 20.0% |
| !!! | TATTATTTTAGGACATTGAT+GGG | + | Chr3:21826113-21826132 | MsG0380012645.01.T01:intron | 20.0% |
| !!! | TTATTATTTTAGGACATTGA+TGG | + | Chr3:21826112-21826131 | MsG0380012645.01.T01:intron | 20.0% |
| ! | AAATCAACTAGTAGCTAATA+AGG | - | Chr3:21826420-21826439 | None:intergenic | 25.0% |
| ! | AGATTATCACATCCTATATT+AGG | + | Chr3:21826188-21826207 | MsG0380012645.01.T01:CDS | 25.0% |
| ! | GCTAATAAGGAGATATTAAA+TGG | - | Chr3:21826407-21826426 | None:intergenic | 25.0% |
| ! | TTACAAGACAATATATAGCA+AGG | - | Chr3:21825908-21825927 | None:intergenic | 25.0% |
| ! | TTCTGCTAAATCAATTGAAA+AGG | + | Chr3:21826875-21826894 | MsG0380012645.01.T01:CDS | 25.0% |
| !! | TTCAATTGATTTAGCAGAAT+TGG | - | Chr3:21826874-21826893 | None:intergenic | 25.0% |
| !! | TTTTGACATTCAAAGTATAG+AGG | - | Chr3:21826623-21826642 | None:intergenic | 25.0% |
| ATTTATTTAGCCCTTCCTAT+AGG | + | Chr3:21826848-21826867 | MsG0380012645.01.T01:intron | 30.0% | |
| CATGACCTAACAATATCTTT+AGG | + | Chr3:21826512-21826531 | MsG0380012645.01.T01:intron | 30.0% | |
| GGCTAAATAAATCAAACAAG+AGG | - | Chr3:21826840-21826859 | None:intergenic | 30.0% | |
| GTTACAGATGAACAAATTGA+TGG | + | Chr3:21825771-21825790 | MsG0380012645.01.T01:CDS | 30.0% | |
| TATCTCAGATGAATTGTTTG+AGG | + | Chr3:21825830-21825849 | MsG0380012645.01.T01:CDS | 30.0% | |
| TGCACAATAACTATCTTTGA+AGG | - | Chr3:21826814-21826833 | None:intergenic | 30.0% | |
| ! | AAAGCATTAAAAGCCAAAGT+TGG | + | Chr3:21826903-21826922 | MsG0380012645.01.T01:CDS | 30.0% |
| ! | ACCTAACAATATCTTTAGGA+TGG | + | Chr3:21826516-21826535 | MsG0380012645.01.T01:intron | 30.0% |
| ! | TTCCAAACTTGCTCTTAAAA+GGG | - | Chr3:21825866-21825885 | None:intergenic | 30.0% |
| ! | TTGTTGCTATTGATAAGTTG+TGG | - | Chr3:21826334-21826353 | None:intergenic | 30.0% |
| !! | TAGGTCATGTTACTTGTTTT+TGG | - | Chr3:21826501-21826520 | None:intergenic | 30.0% |
| ACTAGACGGTAACCTAATAT+AGG | - | Chr3:21826203-21826222 | None:intergenic | 35.0% | |
| ACTTTGCCTTTCAACCAATT+TGG | - | Chr3:21826958-21826977 | None:intergenic | 35.0% | |
| ATATATTTAGACTCTCCTGC+TGG | + | Chr3:21825729-21825748 | MsG0380012645.01.T01:CDS | 35.0% | |
| CAAGCTTGCAAAAATTGATG+AGG | + | Chr3:21826023-21826042 | MsG0380012645.01.T01:CDS | 35.0% | |
| CTCTTGTTCCATTTGTACAT+GGG | + | Chr3:21825799-21825818 | MsG0380012645.01.T01:CDS | 35.0% | |
| GCCATCCTAAAGATATTGTT+AGG | - | Chr3:21826520-21826539 | None:intergenic | 35.0% | |
| GTAAAGAAACATACTGTGCA+TGG | - | Chr3:21826361-21826380 | None:intergenic | 35.0% | |
| TCTGATGAAACAGAAAAGTG+TGG | + | Chr3:21826660-21826679 | MsG0380012645.01.T01:intron | 35.0% | |
| TTGAAAGGCAAAGTAAAGGT+AGG | + | Chr3:21826964-21826983 | MsG0380012645.01.T01:CDS | 35.0% | |
| TTGGTTGAAAGGCAAAGTAA+AGG | + | Chr3:21826960-21826979 | MsG0380012645.01.T01:CDS | 35.0% | |
| ! | ATTTAGCAGAATTGGCCTAT+AGG | - | Chr3:21826866-21826885 | None:intergenic | 35.0% |
| ! | GTTCCAAACTTGCTCTTAAA+AGG | - | Chr3:21825867-21825886 | None:intergenic | 35.0% |
| !! | TACCCTTTTAAGAGCAAGTT+TGG | + | Chr3:21825861-21825880 | MsG0380012645.01.T01:intron | 35.0% |
| CATCACTTCATCACCAACTT+TGG | - | Chr3:21826919-21826938 | None:intergenic | 40.0% | |
| CCTGTGAGGAAAAGAATGTT+CGG | + | Chr3:21826256-21826275 | MsG0380012645.01.T01:CDS | 40.0% | |
| GCTCTTGTTCCATTTGTACA+TGG | + | Chr3:21825798-21825817 | MsG0380012645.01.T01:CDS | 40.0% | |
| GCTGGTTACAAAGTTGGAAA+TGG | + | Chr3:21825747-21825766 | MsG0380012645.01.T01:CDS | 40.0% | |
| GGTTGAACAATGAAGAAGTC+AGG | + | Chr3:21826556-21826575 | MsG0380012645.01.T01:CDS | 40.0% | |
| GTTCCATTTGTACATGGGAT+GGG | + | Chr3:21825804-21825823 | MsG0380012645.01.T01:CDS | 40.0% | |
| TGTTCCATTTGTACATGGGA+TGG | + | Chr3:21825803-21825822 | MsG0380012645.01.T01:CDS | 40.0% | |
| TTGAGGCCAAATTGGTTGAA+AGG | + | Chr3:21826949-21826968 | MsG0380012645.01.T01:CDS | 40.0% | |
| TTGATAAGTTGTGGCCAAGT+TGG | - | Chr3:21826325-21826344 | None:intergenic | 40.0% | |
| TTTCAGTCTCACCTAACTCA+CGG | - | Chr3:21826228-21826247 | None:intergenic | 40.0% | |
| TTTCCAACTTTGTAACCAGC+AGG | - | Chr3:21825747-21825766 | None:intergenic | 40.0% | |
| ! | AGAAAAGTGTGGTCAGTAGT+TGG | + | Chr3:21826671-21826690 | MsG0380012645.01.T01:intron | 40.0% |
| ! | ATTCTTTTCCTCACAGGATG+AGG | - | Chr3:21826253-21826272 | None:intergenic | 40.0% |
| ! | GAAAAGTGTGGTCAGTAGTT+GGG | + | Chr3:21826672-21826691 | MsG0380012645.01.T01:intron | 40.0% |
| !! | ATTCTAGAACCATGCTACCA+CGG | + | Chr3:21826151-21826170 | MsG0380012645.01.T01:CDS | 40.0% |
| !! | CAAAGTTGGTGATGAAGTGA+TGG | + | Chr3:21826917-21826936 | MsG0380012645.01.T01:CDS | 40.0% |
| AAAGAATGTTCGGTCGTGCT+TGG | + | Chr3:21826266-21826285 | MsG0380012645.01.T01:CDS | 45.0% | |
| AGAAATTCCCATCACACTCG+CGG | - | Chr3:21825975-21825994 | None:intergenic | 45.0% | |
| AGACCCATCCCATGTACAAA+TGG | - | Chr3:21825810-21825829 | None:intergenic | 45.0% | |
| ATCTCTCACAGGTGCTCTAA+GGG | - | Chr3:21826293-21826312 | None:intergenic | 45.0% | |
| CCTAACTCACGGAAACTAGA+CGG | - | Chr3:21826217-21826236 | None:intergenic | 45.0% | |
| CTGAAAAACCTCATCCTGTG+AGG | + | Chr3:21826242-21826261 | MsG0380012645.01.T01:CDS | 45.0% | |
| GAAAGCAATTCACACTGCAG+AGG | + | Chr3:21826578-21826597 | MsG0380012645.01.T01:CDS | 45.0% | |
| GAAGTCACTTGAGGCCAAAT+TGG | + | Chr3:21826941-21826960 | MsG0380012645.01.T01:CDS | 45.0% | |
| ! | AGCAGAATTGGCCTATAGGA+AGG | - | Chr3:21826862-21826881 | None:intergenic | 45.0% |
| ! | AGTGATGGTGAAGTCACTTG+AGG | + | Chr3:21826932-21826951 | MsG0380012645.01.T01:CDS | 45.0% |
| ! | ATGGCTCTGTTGCAAATGCA+TGG | + | Chr3:21826535-21826554 | MsG0380012645.01.T01:CDS | 45.0% |
| ! | CCGAACATTCTTTTCCTCAC+AGG | - | Chr3:21826259-21826278 | None:intergenic | 45.0% |
| ! | GCAGAATTGGCCTATAGGAA+GGG | - | Chr3:21826861-21826880 | None:intergenic | 45.0% |
| ! | TCTCCTGCTGGTTACAAAGT+TGG | + | Chr3:21825741-21825760 | MsG0380012645.01.T01:CDS | 45.0% |
| AGGTTAACCGCGAGTGTGAT+GGG | + | Chr3:21825965-21825984 | MsG0380012645.01.T01:CDS | 50.0% | |
| ATGTTGCACTCTGTTGCAGG+AGG | + | Chr3:21825945-21825964 | MsG0380012645.01.T01:intron | 50.0% | |
| CAATTCACACTGCAGAGGTG+AGG | + | Chr3:21826583-21826602 | MsG0380012645.01.T01:intron | 50.0% | |
| CATCTCTCACAGGTGCTCTA+AGG | - | Chr3:21826294-21826313 | None:intergenic | 50.0% | |
| GAGATGGCAACGTACCAACT+TGG | + | Chr3:21826308-21826327 | MsG0380012645.01.T01:CDS | 50.0% | |
| GTCATGTTGCACTCTGTTGC+AGG | + | Chr3:21825942-21825961 | MsG0380012645.01.T01:intron | 50.0% | |
| ! | CCGTCTAGTTTCCGTGAGTT+AGG | + | Chr3:21826214-21826233 | MsG0380012645.01.T01:CDS | 50.0% |
| ! | CTTAGAGCACCTGTGAGAGA+TGG | + | Chr3:21826292-21826311 | MsG0380012645.01.T01:CDS | 50.0% |
| ! | TCTCTCACAGGTGCTCTAAG+GGG | - | Chr3:21826292-21826311 | None:intergenic | 50.0% |
| GAGGTTAACCGCGAGTGTGA+TGG | + | Chr3:21825964-21825983 | MsG0380012645.01.T01:CDS | 55.0% | |
| GGTACGTTGCCATCTCTCAC+AGG | - | Chr3:21826304-21826323 | None:intergenic | 55.0% | |
| TCTTATCTGCCTCTGTGCCG+TGG | - | Chr3:21826171-21826190 | None:intergenic | 55.0% | |
| ACCATGCTACCACGGCACAG+AGG | + | Chr3:21826159-21826178 | MsG0380012645.01.T01:CDS | 60.0% | |
| GCCTCTGTGCCGTGGTAGCA+TGG | - | Chr3:21826163-21826182 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 21825717 | 21827040 | 21825717 | ID=MsG0380012645.01;Name=MsG0380012645.01 |
| Chr3 | mRNA | 21825717 | 21827040 | 21825717 | ID=MsG0380012645.01.T01;Parent=MsG0380012645.01;Name=MsG0380012645.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.6|1|1|5|0|231 |
| Chr3 | exon | 21825717 | 21825851 | 21825717 | ID=MsG0380012645.01.T01:exon:7982;Parent=MsG0380012645.01.T01 |
| Chr3 | exon | 21825964 | 21826044 | 21825964 | ID=MsG0380012645.01.T01:exon:7983;Parent=MsG0380012645.01.T01 |
| Chr3 | exon | 21826124 | 21826366 | 21826124 | ID=MsG0380012645.01.T01:exon:7984;Parent=MsG0380012645.01.T01 |
| Chr3 | exon | 21826534 | 21826599 | 21826534 | ID=MsG0380012645.01.T01:exon:7985;Parent=MsG0380012645.01.T01 |
| Chr3 | exon | 21826870 | 21827040 | 21826870 | ID=MsG0380012645.01.T01:exon:7986;Parent=MsG0380012645.01.T01 |
| Chr3 | CDS | 21825717 | 21825851 | 21825717 | ID=MsG0380012645.01.T01:cds;Parent=MsG0380012645.01.T01 |
| Chr3 | CDS | 21825964 | 21826044 | 21825964 | ID=MsG0380012645.01.T01:cds;Parent=MsG0380012645.01.T01 |
| Chr3 | CDS | 21826124 | 21826366 | 21826124 | ID=MsG0380012645.01.T01:cds;Parent=MsG0380012645.01.T01 |
| Chr3 | CDS | 21826534 | 21826599 | 21826534 | ID=MsG0380012645.01.T01:cds;Parent=MsG0380012645.01.T01 |
| Chr3 | CDS | 21826870 | 21827040 | 21826870 | ID=MsG0380012645.01.T01:cds;Parent=MsG0380012645.01.T01 |
| Gene Sequence |
| Protein sequence |
